Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008074.1 Hibiscus syriacus cultivar Beakdansim tig00110576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 348028
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 2
Found at i:1451 original size:92 final size:92
Alignment explanation
Indices: 1239--1610 Score: 650
Period size: 92 Copynumber: 4.1 Consensus size: 92
1229 TAGATTGCTT
*
1239 AGTAAATTTATTCGG-TGCTGCCAATTCTGCTAAACTGTGTATTC-TTAACACTGTG-AA-A-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1299 TTTGTCTTTGTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTGTCTTTTGGTTGAA
1326 AGT-AATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1389 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTG-TTTGTCTTTTGGTTGAA
1417 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1482 TTTGTCTTTGTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTGTCTTTTGGTTGAA
* *
1509 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATTCTTCTTTAACACTGTGAAATAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGT-GTATTCTTTAACACTGTGAAATAGT
1574 ATTTGTCTTTGTTTGTCTTTTGGTTGAA
65 ATTTGTCTTTGTTTGTCTTTTGGTTGAA
1602 AGTAAATTT
1 AGTAAATTT
1611 ATCCATTCAA
Statistics
Matches: 274, Mismatches: 3, Indels: 10
0.95 0.01 0.03
Matches are distributed among these distances:
86 10 0.04
87 32 0.12
88 11 0.04
89 2 0.01
90 13 0.05
91 20 0.07
92 114 0.42
93 72 0.26
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (92 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTGTCTTTTGGTTGAA
Found at i:1693 original size:19 final size:19
Alignment explanation
Indices: 1653--1780 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
1643 ATAGTTACTT
* *
1653 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
1673 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
1692 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
1711 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
1725 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
1744 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
1758 TCGCAACGCGAAACC-AAA
1 TCGCAACGCGAAACCAAAA
1776 TCGCA
1 TCGCA
1781 TTGCGATTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 9 0.10
19 38 0.43
20 13 0.15
ACGTcount: A:0.45, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:1732 original size:33 final size:32
Alignment explanation
Indices: 1689--1780 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 32
1679 CGCGAAACCA
**
1689 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
1721 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
1754 AAGATCGCAACGCGAAACC-AAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
1781 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
32 10 0.18
33 46 0.82
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:1803 original size:19 final size:19
Alignment explanation
Indices: 1776--1909 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
1766 CGAAACCAAA
*
1776 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
1795 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
1811 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
*
1827 TCGCGTTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
1843 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
1860 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
1879 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
1899 TCGTGTTGCGA
1 TCGCGTTGCGA
1910 AAGTAAACTA
Statistics
Matches: 97, Mismatches: 8, Indels: 19
0.78 0.06 0.15
Matches are distributed among these distances:
14 16 0.16
15 3 0.03
16 11 0.11
17 8 0.08
18 8 0.08
19 39 0.40
20 12 0.12
ACGTcount: A:0.10, C:0.19, G:0.25, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:1817 original size:14 final size:14
Alignment explanation
Indices: 1798--1853 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
1788 TTTCATTTCG
1798 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
1812 CGTTGCGATTTCATTT
1 CGTTGCGA-TTC-TTT
*
1828 CGCGTTGCGATTCTGT
1 --CGTTGCGATTCTTT
1844 CGTTGCGATT
1 CGTTGCGATT
1854 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 18 0.49
15 3 0.08
16 5 0.14
17 3 0.08
18 8 0.22
ACGTcount: A:0.09, C:0.21, G:0.25, T:0.45
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:1862 original size:33 final size:33
Alignment explanation
Indices: 1781--1872 Score: 168
Period size: 32 Copynumber: 2.8 Consensus size: 33
1771 CCAAATCGCA
*
1781 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
1814 TTGCGA-TTTCATTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
1846 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
1873 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.54
33 26 0.46
ACGTcount: A:0.10, C:0.21, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:3748 original size:38 final size:38
Alignment explanation
Indices: 3705--3777 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
3695 TAATTGATTG
*
3705 TTTTTGATTGTTTAATTGATTTGTAAAAGTTGATTCAA
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
3743 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
3778 TGTAAAAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.01, G:0.16, T:0.53
Consensus pattern (38 bp):
TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
Found at i:3764 original size:19 final size:19
Alignment explanation
Indices: 3701--3764 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
3691 AGTTTAATTG
3701 ATTG-TTTTTGATTGTTTA
1 ATTGATTTTTGATTGTTTA
* * ** *
3719 ATTGATTTGTAAAAG-TTG
1 ATTGATTTTTGATTGTTTA
*
3737 ATTCAATTTTTGATTGTTTA
1 ATT-GATTTTTGATTGTTTA
3757 ATTGATTT
1 ATTGATTT
3765 GTAAAAGATG
Statistics
Matches: 31, Mismatches: 12, Indels: 5
0.65 0.25 0.10
Matches are distributed among these distances:
18 9 0.29
19 17 0.55
20 5 0.16
ACGTcount: A:0.25, C:0.02, G:0.16, T:0.58
Consensus pattern (19 bp):
ATTGATTTTTGATTGTTTA
Found at i:3778 original size:14 final size:14
Alignment explanation
Indices: 3759--3794 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
3749 ATTGTTTAAT
3759 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
3773 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
3787 TGATTTGT
1 TGATTTGT
3795 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:3917 original size:19 final size:19
Alignment explanation
Indices: 3901--4001 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
3891 AAAAATGACT
3901 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
3920 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
3939 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
3953 ATCGCAATGCGAAATG-AA
1 ATCGCAATGCGAAATGAAA
3971 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
3991 ATCGCAATGCG
1 ATCGCAATGCG
4002 TTTATAATTT
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 12 0.16
19 34 0.47
20 12 0.16
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4054 original size:19 final size:19
Alignment explanation
Indices: 4030--4423 Score: 485
Period size: 19 Copynumber: 22.4 Consensus size: 19
4020 GATTATCTCG
4030 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4049 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4067 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
4081 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4100 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4119 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4138 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
4152 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4171 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
4190 TTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCA
*
4209 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
4228 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
4247 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
4261 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4279 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
4298 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
4312 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
4330 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
4349 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
4363 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
4383 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
4397 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
4416 TTGCGATT
1 TTGCGATT
4424 GTATTTTCCG
Statistics
Matches: 332, Mismatches: 12, Indels: 62
0.82 0.03 0.15
Matches are distributed among these distances:
14 41 0.12
15 6 0.02
16 41 0.12
17 28 0.08
18 33 0.10
19 171 0.52
20 12 0.04
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:4069 original size:51 final size:49
Alignment explanation
Indices: 4008--4423 Score: 334
Period size: 51 Copynumber: 7.9 Consensus size: 49
3998 TGCGTTTATA
*
4008 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGA-TTTC
1 ATTTCGCATTGCGATT-T-TCGTTGCGA-TTTCATTTCGCGTTGCGATTTTC
*
4059 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA-T-TTTCGTTGCGA-TTTCATTTCGCGTTGCGATTTTC
* * * **
4111 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
** *
4163 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTA
1 ATTTCGCATTGCGA---T--TTTCG--TTGCGA-TTTCATTTCGCGTTGCGATTTTC
* * * *
4220 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGA-TTTC
1 ATTTCGCATTGCGATTTTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
* * * *
4271 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGA-TTTC
1 ATTTCGCATTGCGATTTTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
* * * *
4322 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTCGTTGCG-ATTTC-ATT-TCGCGTTGCGATTTTC
*
4374 ATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATTTCGCGTTGCGATT
1 ATTT-CGCATTGCGATTTTC--GTTGCGA-TTTCATTTCGCGTTGCGATT
4424 GTATTTTCCG
Statistics
Matches: 317, Mismatches: 26, Indels: 42
0.82 0.07 0.11
Matches are distributed among these distances:
50 18 0.06
51 152 0.48
52 67 0.21
53 28 0.09
54 5 0.02
55 7 0.02
57 29 0.09
58 4 0.01
59 7 0.02
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (49 bp):
ATTTCGCATTGCGATTTTCGTTGCGATTTCATTTCGCGTTGCGATTTTC
Found at i:4153 original size:71 final size:71
Alignment explanation
Indices: 4030--4423 Score: 500
Period size: 71 Copynumber: 5.6 Consensus size: 71
4020 GATTATCTCG
4030 TTGCGATTTTCATTTCGCATTGCGA-TTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
4094 TTCGCA
66 TTCGCA
4100 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
4165 TTCGCA
66 TTCGCA
* *
4171 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG--TTGCGATT
4236 TTCATTTCGCA
61 TTCATTTCGCA
*
4247 TTGCGA--TTC-TCTCG--TTGCGA-TTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATT
*
4304 TTC-TCTCG--
61 TTCATTTCGCA
*
4312 TTGCGA-TTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
4376 TTCCGCA
66 TT-CGCA
* *
4383 TTGCGATTTTCA--T-G--TTGGGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT
4424 GTATTTTCCG
Statistics
Matches: 294, Mismatches: 11, Indels: 41
0.85 0.03 0.12
Matches are distributed among these distances:
65 12 0.04
66 3 0.01
67 40 0.14
68 8 0.03
69 9 0.03
70 78 0.27
71 100 0.34
72 5 0.02
73 6 0.02
74 8 0.03
76 25 0.09
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (71 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
TTCGCA
Found at i:6736 original size:12 final size:12
Alignment explanation
Indices: 6719--6743 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6709 TCTTCGGGGA
6719 CTTTTTCTTCTT
1 CTTTTTCTTCTT
6731 CTTTTTCTTCTT
1 CTTTTTCTTCTT
6743 C
1 C
6744 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:6952 original size:24 final size:24
Alignment explanation
Indices: 6918--6964 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6908 CTGAAACATC
6918 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
6942 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
6965 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:7666 original size:20 final size:20
Alignment explanation
Indices: 7638--8046 Score: 486
Period size: 20 Copynumber: 20.4 Consensus size: 20
7628 AAATTTCAGT
* * * *
7638 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
7658 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
7678 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
7698 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
7718 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
7738 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
7758 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
7778 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
7798 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
7818 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
7838 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
7858 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
7878 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
7898 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
7918 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
7938 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
7958 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
7978 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
7998 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
8018 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
8038 GTTGCGATT
1 GTTGCGATT
8047 ATGGAAAATC
Statistics
Matches: 343, Mismatches: 36, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.02
20 331 0.97
21 6 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:8535 original size:30 final size:29
Alignment explanation
Indices: 8497--8555 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 29
8487 GAAACGCGAG
8497 TATATGACGACTGATCCCATCAACATATC
1 TATATGACGACTGATCCCATCAACATATC
8526 TATACTGACGACTGATCCCATCAACATATC
1 TATA-TGACGACTGATCCCATCAACATATC
8556 GTTTAAGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (29 bp):
TATATGACGACTGATCCCATCAACATATC
Found at i:10500 original size:68 final size:69
Alignment explanation
Indices: 10418--10569 Score: 261
Period size: 68 Copynumber: 2.2 Consensus size: 69
10408 CCTAAATTTG
* * *
10418 TTCGGTTCGATTAATAATTTTCAAATAAATTTTGGTTCGATTAATGGTTAAAGAAAAAAA-TTGG
1 TTCGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAAAGTAGG
10482 TTAA
66 TTAA
10486 TTCGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAAAGTAGG
1 TTCGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAAAGTAGG
10551 TTAA
66 TTAA
*
10555 TTCGGCTCGGTTAAT
1 TTCGGTTCGGTTAAT
10570 CGAACCAAAA
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
68 58 0.73
69 21 0.27
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (69 bp):
TTCGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAAAAGTAGG
TTAA
Found at i:14114 original size:23 final size:21
Alignment explanation
Indices: 14088--14129 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
14078 TATAAAAAAT
14088 TATTTTTCATTAAATATTTTTGA
1 TATTTTT-ATTAAAT-TTTTTGA
*
14111 TATTTTTATTTAATTTTTT
1 TATTTTTATTAAATTTTTT
14130 AAATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TATTTTTATTAAATTTTTTGA
Found at i:14377 original size:26 final size:26
Alignment explanation
Indices: 14348--14398 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14338 TTAGTCTAAT
*
14348 GATCAATTTATAATTTTTAATAGTTG
1 GATCAATTTATAAATTTTAATAGTTG
*
14374 GATCATTTTATAAATTTTAATAGTT
1 GATCAATTTATAAATTTTAATAGTT
14399 TGTGTATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (26 bp):
GATCAATTTATAAATTTTAATAGTTG
Found at i:18290 original size:30 final size:29
Alignment explanation
Indices: 18246--18311 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
18236 TCGTTATTGG
* **
18246 TTTT-TTTGGCCCATTAGGATAATTGGGTT
1 TTTTATTTAGCCCATTAGGAT-ATCCGGTT
*
18275 TTTTATTTAGCCCATTAGGGTATCCGGTT
1 TTTTATTTAGCCCATTAGGATATCCGGTT
18304 TTTTATTT
1 TTTTATTT
18312 TGGAGAATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.17, C:0.12, G:0.20, T:0.52
Consensus pattern (29 bp):
TTTTATTTAGCCCATTAGGATATCCGGTT
Found at i:24766 original size:26 final size:26
Alignment explanation
Indices: 24734--24792 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
24724 TTAACATAAA
24734 CGGTTTTTCCCCGTCCACATTTAATT
1 CGGTTTTTCCCCGTCCACATTTAATT
24760 CGGTTTTTCCCCGTCCACATTTAATT
1 CGGTTTTTCCCCGTCCACATTTAATT
24786 CGGTTTT
1 CGGTTTT
24793 CAATTTTCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.44
Consensus pattern (26 bp):
CGGTTTTTCCCCGTCCACATTTAATT
Found at i:25008 original size:23 final size:22
Alignment explanation
Indices: 24954--25008 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
24944 TAATCATTAA
*
24954 AATTATAA-TAAAATTTAATTT
1 AATTATAATTAAAATTTAAATT
24975 AATTATCAATTAAAATTTAAATT
1 AATTAT-AATTAAAATTTAAATT
*
24998 GATATATAATT
1 AAT-TATAATT
25009 CTACTCACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 6 0.21
22 2 0.07
23 18 0.62
24 3 0.10
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
AATTATAATTAAAATTTAAATT
Found at i:25873 original size:11 final size:11
Alignment explanation
Indices: 25857--25907 Score: 93
Period size: 11 Copynumber: 4.6 Consensus size: 11
25847 AAAATTGGTG
25857 ATTTGAAATTA
1 ATTTGAAATTA
25868 ATTTGAAATTA
1 ATTTGAAATTA
25879 ATTTGAAATTA
1 ATTTGAAATTA
25890 ATTTGAAATTA
1 ATTTGAAATTA
*
25901 AATTGAA
1 ATTTGAA
25908 TAGAGTCACC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
11 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (11 bp):
ATTTGAAATTA
Found at i:26844 original size:30 final size:31
Alignment explanation
Indices: 26785--26860 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 31
26775 TCAAAGAACC
*
26785 AAAATAATACAAACAGGAATTTAAAGGACT-
1 AAAATAATATAAACAGGAATTTAAAGGACTG
*
26815 AAAATAATATAAACA-GAATTTTAAGGGACTG
1 AAAATAATATAAACAGGAA-TTTAAAGGACTG
26846 AATAATAAATATAAA
1 AA-AAT-AATATAAA
26861 TAAACCAGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 3 0.08
30 24 0.60
31 2 0.05
32 3 0.08
33 8 0.20
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.24
Consensus pattern (31 bp):
AAAATAATATAAACAGGAATTTAAAGGACTG
Found at i:28559 original size:3 final size:3
Alignment explanation
Indices: 28551--28585 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
28541 TACAAAAGTG
*
28551 TAA TAA TAA TAT TAA -AA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
28586 ATTAAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29135 original size:134 final size:133
Alignment explanation
Indices: 28800--29225 Score: 564
Period size: 134 Copynumber: 3.2 Consensus size: 133
28790 GTCCAAGGGT
* * *
28800 GGATGACACGGCTCATACGTGATGAAGAGTTCTGGTCATCTTTAGGAAGGGTGATAACTCGGTTC
1 GGATGACACGACTCATACGTGATGAAGAGTTCTGGCCATCTTTAGGAAAGGTGATAACTCGGTTC
* * ** *
28865 CTACGTGATGAGGACAACTGGTTATCTAAGGGTGATACGGCTCCTACGTGATGAGGAGATCTGGT
66 CTACGTGATGAGGACGACTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGGTCTGGT
*
28930 CGG
131 CAG
* * * ** * **
28933 GGATGACACGATTCCTACGTGATGAGGACATCTGGCCATATTTAGGAGTGGTGATAACTCGGTTC
1 GGATGACACGACTCATACGTGATGAAGAGTTCTGGCCATCTTTAGGAAAGGTGATAACTCGGTTC
* * * * *
28998 CTACGCGATGAGAACGGCTGGTTATCTACGGTTGACGCGGCTCCTACGTGATGAGGAGGTATGGT
66 CTACGTGATGAGGACGACTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGGTCTGGT
29063 CAAG
131 C-AG
* * *
29067 GGATGACACTACTCATACGCGATGAAGAGTTTTGGCCATCTTTAGGAAAGGTGATAACTCGGTTC
1 GGATGACACGACTCATACGTGATGAAGAGTTCTGGCCATCTTTAGGAAAGGTGATAACTCGGTTC
* *
29132 CTACGTGATGAGGACGACTGGTTATCTAAAGTTGACGTGGCTCCTACGTGATGAGGAGGTCTGGT
66 CTACGTGATGAGGACGACTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGGTCTGGT
29197 CGAG
131 C-AG
** *
29201 GGATGACACGGTTCCTACGTGATGA
1 GGATGACACGACTCATACGTGATGA
29226 GGATGACCAT
Statistics
Matches: 247, Mismatches: 45, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
133 111 0.45
134 136 0.55
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (133 bp):
GGATGACACGACTCATACGTGATGAAGAGTTCTGGCCATCTTTAGGAAAGGTGATAACTCGGTTC
CTACGTGATGAGGACGACTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGGTCTGGT
CAG
Found at i:29277 original size:30 final size:30
Alignment explanation
Indices: 29243--29303 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
29233 CATCTTTAGG
29243 GATAA-TGATTTCAAAAGAAACCGACTCAAA
1 GATAATTG-TTTCAAAAGAAACCGACTCAAA
* *
29273 GATAATTTGTTTCAAAAGAAACTGTCTCAAA
1 GATAA-TTGTTTCAAAAGAAACCGACTCAAA
29304 AGAGACAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 5 0.19
31 20 0.74
32 2 0.07
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (30 bp):
GATAATTGTTTCAAAAGAAACCGACTCAAA
Found at i:29430 original size:65 final size:64
Alignment explanation
Indices: 29280--29472 Score: 235
Period size: 64 Copynumber: 3.0 Consensus size: 64
29270 AAAGATAATT
* * * *
29280 TGTTTCAAAAGAAACTGTCTCAAAAGAGACAAAACTCGTTTCAAGGGAAGCGACTCAAAGATGA
1 TGTTTCAAAGGAAACTGTCTCAAAAGAGACAAAATTCGTTTCAAGGGAAACGTCTCAAAGATGA
* * ** * *
29344 AGTTTTAAAGGAAACTGTCTCAAGCGAGACAAAATTTGTTTTTAAGGGAAAC-TCTCAAAGATCG
1 TGTTTCAAAGGAAACTGTCTCAAAAGAGACAAAATTCG-TTTCAAGGGAAACGTCTCAAAGAT-G
*
29408 G
64 A
* *
29409 TGTTTCATAGGAAACTGTCTCAAATGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATG
1 TGTTTCAAAGGAAACTGTCTCAAAAGAGACAAAATTCGTTTCAAGGGAAACG-TCTCAAAGATG
29473 TTTGTTTTGT
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
64 52 0.49
65 45 0.42
66 10 0.09
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (64 bp):
TGTTTCAAAGGAAACTGTCTCAAAAGAGACAAAATTCGTTTCAAGGGAAACGTCTCAAAGATGA
Found at i:29735 original size:66 final size:67
Alignment explanation
Indices: 29624--29772 Score: 250
Period size: 66 Copynumber: 2.3 Consensus size: 67
29614 CGTTTTAAGT
*
29624 GAGACAAAATTTG-TTTCAAATGAAACAATCTCAAAGGTTGGTTTTTCATTA-AAAATTGTCTCA
1 GAGACAAAATTTGTTTTCAAATGAAACAATCTCAAAGGTTGATTTTTCATTAGAAAA-TGTCTCA
*
29687 AGC
65 AGA
29690 GAGACAAAATTTGTTTTCAAA-GAAACAATCTCAAAGGTTGATTTTTCATTAGAAAATGTCTCAA
1 GAGACAAAATTTGTTTTCAAATGAAACAATCTCAAAGGTTGATTTTTCATTAGAAAATGTCTCAA
29754 GA
66 GA
29756 GAGACAAAATTTGTTTT
1 GAGACAAAATTTGTTTT
29773 TAAGGGAATA
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
66 68 0.86
67 11 0.14
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (67 bp):
GAGACAAAATTTGTTTTCAAATGAAACAATCTCAAAGGTTGATTTTTCATTAGAAAATGTCTCAA
GA
Found at i:30116 original size:94 final size:94
Alignment explanation
Indices: 29996--30208 Score: 372
Period size: 94 Copynumber: 2.3 Consensus size: 94
29986 GTGTTTAAAT
* * * * *
29996 GGGAAATTGTCTCACGCGAGACGAATCAGCTTTGAAAATCTCAAGTGATATTAATTTTGTTTTAA
1 GGGAAAATGTCTCAAGTGAGACGAATCAGCTTTGAAAATCTCAAATGATATTAATTTTGTTTCAA
*
30061 GTACAACAACTTTGAAATTTGTATTATGA
66 GTAAAACAACTTTGAAATTTGTATTATGA
30090 GGGAAAATGTCTCAAGTGAGACGAATCAGCTTTGAAAATCTCAAATGATATTAATTTTGTTTCAA
1 GGGAAAATGTCTCAAGTGAGACGAATCAGCTTTGAAAATCTCAAATGATATTAATTTTGTTTCAA
30155 GTAAAACAACTTTGAAATTTGTATTATGA
66 GTAAAACAACTTTGAAATTTGTATTATGA
30184 GGGAAAATGTCTCAAGTGAGACGAA
1 GGGAAAATGTCTCAAGTGAGACGAA
30209 ATTTGTTTTG
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 113 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (94 bp):
GGGAAAATGTCTCAAGTGAGACGAATCAGCTTTGAAAATCTCAAATGATATTAATTTTGTTTCAA
GTAAAACAACTTTGAAATTTGTATTATGA
Found at i:30409 original size:34 final size:35
Alignment explanation
Indices: 30293--30455 Score: 138
Period size: 35 Copynumber: 4.7 Consensus size: 35
30283 CTCAAAGGAA
* ** * *
30293 AAAAATGTCTCAAGCGAGATGAAGT-TTGTTTTAAG
1 AAAACTGTCTCAAGCGAGACAAAATGTT-TTTCAAG
* * *
30328 ATAAATTGTCTTAAGTGAGACAAAATTTGTTTTTCAAG
1 A-AAACTGTCTCAAGCGAGACAAAA--TGTTTTTCAAG
30366 --AACTGTCTCAAGCGAGACAAAAT-TTTTTCAAG
1 AAAACTGTCTCAAGCGAGACAAAATGTTTTTCAAG
* *
30398 AAAACTGTCTCAAGCGAGATAAAATGTGTTTT-GAG
1 AAAACTGTCTCAAGCGAGACAAAATGT-TTTTCAAG
**
30433 AAATTTGTCTCAAGCGAGACAAA
1 AAAACTGTCTCAAGCGAGACAAA
30456 GTTTATTTTT
Statistics
Matches: 105, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
32 9 0.09
33 1 0.01
34 22 0.21
35 43 0.41
36 21 0.20
38 7 0.07
39 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (35 bp):
AAAACTGTCTCAAGCGAGACAAAATGTTTTTCAAG
Found at i:30428 original size:69 final size:71
Alignment explanation
Indices: 30298--30455 Score: 171
Period size: 69 Copynumber: 2.3 Consensus size: 71
30288 AGGAAAAAAA
** * * * * * *
30298 TGTCTCAAGCGAGATGAAGTTTGTTTTAAGATAAATTGTCTTAAGTGAGACAAAATTTGTTTTTC
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGATAAACTGTCTCAAGCGAGACAAAATGTG-TTTT-
30363 AAG-AA-C
64 AAGAAATC
* *
30369 TGTCTCAAGCGAGACAAAATTT-TTTCAAGA-AAACTGTCTCAAGCGAGATAAAATGTGTTTTGA
1 TGTCTCAAGCGAGACAAAATTTGTTTCAAGATAAACTGTCTCAAGCGAGACAAAATGTGTTTTAA
*
30432 GAAATT
66 GAAATC
30438 TGTCTCAAGCGAGACAAA
1 TGTCTCAAGCGAGACAAA
30456 GTTTATTTTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
67 2 0.03
68 6 0.08
69 40 0.54
70 7 0.09
71 19 0.26
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (71 bp):
TGTCTCAAGCGAGACAAAATTTGTTTCAAGATAAACTGTCTCAAGCGAGACAAAATGTGTTTTAA
GAAATC
Found at i:30480 original size:36 final size:33
Alignment explanation
Indices: 30294--30487 Score: 102
Period size: 35 Copynumber: 5.5 Consensus size: 33
30284 TCAAAGGAAA
* * * * *
30294 AAAATGTCTCAAGCGAGATGAAGTTTGTTTTAAG
1 AAAACGTCTCAAGCGAGA-CAAATTTTTTTTGAG
* * * *
30328 ATAAATTGTCTTAAGTGAGACAAAATTTGTTTTTCA-
1 A-AAA-CGTCTCAAGCGAGAC-AAATTT-TTTTTGAG
* * **
30364 AGAACTGTCTCAAGCGAGACAAAATTTTTTCAAG
1 AAAAC-GTCTCAAGCGAGACAAATTTTTTTTGAG
* * *
30398 AAAACTGTCTCAAGCGAGATAAAATGTGTTTTGAG
1 AAAAC-GTCTCAAGCGAGA-CAAATTTTTTTTGAG
**
30433 AAATTTGTCTCAAGCGAGACAAAGTTTATTTTTGAG
1 AAA-ACGTCTCAAGCGAGACAAA-TTT-TTTTTGAG
*
30469 AAAACGATCTCAAGTGAGA
1 AAAACG-TCTCAAGCGAGA
30488 TCAACTTTGT
Statistics
Matches: 121, Mismatches: 28, Indels: 20
0.72 0.17 0.12
Matches are distributed among these distances:
33 5 0.04
34 27 0.22
35 45 0.37
36 39 0.32
37 5 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (33 bp):
AAAACGTCTCAAGCGAGACAAATTTTTTTTGAG
Found at i:30596 original size:36 final size:39
Alignment explanation
Indices: 30515--30597 Score: 91
Period size: 36 Copynumber: 2.2 Consensus size: 39
30505 GAAACAAATT
**
30515 CAAAATTTGTATCTTAAAAGAAAAATGTCTCAAGGGAAA
1 CAAAATTTGTATCTTAAAAGAAAAATGTCTCAAACGAAA
* * * *
30554 CGAAATTTGT-T-TTGAAAG-AAATTGTCTCAAACGAGA
1 CAAAATTTGTATCTTAAAAGAAAAATGTCTCAAACGAAA
30590 CAAAATTT
1 CAAAATTT
30598 ATTTATTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
36 21 0.57
37 6 0.16
38 1 0.03
39 9 0.24
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (39 bp):
CAAAATTTGTATCTTAAAAGAAAAATGTCTCAAACGAAA
Found at i:32249 original size:18 final size:18
Alignment explanation
Indices: 32226--32275 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
32216 TTGTTTGTGC
32226 TCTTTGTCCTTTGTTTAT
1 TCTTTGTCCTTTGTTTAT
*
32244 TCTTTG--CTTT-TTTTT
1 TCTTTGTCCTTTGTTTAT
*
32259 TCTTTTTCTCTTTGTTT
1 TCTTTGTC-CTTTGTTT
32276 TGATTCGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
15 9 0.35
16 4 0.15
18 10 0.38
19 3 0.12
ACGTcount: A:0.02, C:0.16, G:0.08, T:0.74
Consensus pattern (18 bp):
TCTTTGTCCTTTGTTTAT
Found at i:36277 original size:29 final size:30
Alignment explanation
Indices: 36182--36280 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
36172 TACAAGGATC
* * * * * *
36182 AAAATAATAAAAACATAAACTCAAAGAACC
1 AAAATAATACAAACAGAAATTTAAAGGACT
*
36212 AAAATAATACAAACAGGAATTTAAAGGACT
1 AAAATAATACAAACAGAAATTTAAAGGACT
* * *
36242 AAAATAATATAAATAGAAATTTAAGGGACT
1 AAAATAATACAAACAGAAATTTAAAGGACT
36272 GAATAATAA
1 -AA-AATAA
36281 ATATAAATAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
30 49 0.88
31 2 0.04
32 5 0.09
ACGTcount: A:0.61, C:0.09, G:0.10, T:0.20
Consensus pattern (30 bp):
AAAATAATACAAACAGAAATTTAAAGGACT
Found at i:37994 original size:3 final size:3
Alignment explanation
Indices: 37986--38023 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
37976 TACAAAAGTG
* *
37986 TAA TAA TAA TAT TAA -AA TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
38024 ATTTAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:39724 original size:22 final size:22
Alignment explanation
Indices: 39675--39732 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
39665 GGTAATTTTT
*
39675 ATTTATTTATATATTTTGAATT
1 ATTTATTTATATATTTTGAATA
*
39697 ATTTATTTATTTATTTTGAA-A
1 ATTTATTTATATATTTTGAATA
*
39718 ATCTTATATATATAT
1 AT-TTATTTATATAT
39733 ATATATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (22 bp):
ATTTATTTATATATTTTGAATA
Found at i:39724 original size:26 final size:22
Alignment explanation
Indices: 39673--39716 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
39663 GAGGTAATTT
39673 TTATTTATTTATATATTTTGAA
1 TTATTTATTTATATATTTTGAA
*
39695 TTATTTATTTATTTATTTTGAA
1 TTATTTATTTATATATTTTGAA
39717 AATCTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (22 bp):
TTATTTATTTATATATTTTGAA
Found at i:39729 original size:2 final size:2
Alignment explanation
Indices: 39722--39746 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39712 TTGAAAATCT
39722 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
39747 TTCGAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:43858 original size:20 final size:19
Alignment explanation
Indices: 43798--43859 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
43788 TAGATATTTA
*
43798 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
43817 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
43835 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
43855 ATTTT
1 ATTTT
43860 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:44355 original size:31 final size:31
Alignment explanation
Indices: 44320--44379 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
44310 TAATTGTATG
* * *
44320 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAATATTGCAAAACTAA
44351 AATTATTTAAATCTCAATATTGCAAAACT
1 AATTATTTAAATCTCAATATTGCAAAACT
44380 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAATATTGCAAAACTAA
Found at i:46645 original size:19 final size:19
Alignment explanation
Indices: 46621--46657 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
46611 TTCTCTGTTT
*
46621 TTTTTTTTCTGTTTCTCTC
1 TTTTTTTTCTGTCTCTCTC
46640 TTTTTTTTCTGTCTCTCT
1 TTTTTTTTCTGTCTCTCT
46658 GTCCCGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTTTTTCTGTCTCTCTC
Found at i:47139 original size:3 final size:3
Alignment explanation
Indices: 47131--47171 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
47121 AATATATATT
*
47131 TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
47172 TGGATAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:47707 original size:113 final size:113
Alignment explanation
Indices: 47491--48049 Score: 913
Period size: 113 Copynumber: 4.9 Consensus size: 113
47481 AGAATTATGC
* * * *
47491 AAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGACGAGTTCTTCT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCT
* * * * * * *
47556 CATTATGAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAGC
63 CATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
47607 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
47672 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
47720 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
47785 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
*
47833 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
47898 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATTATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
* *
47946 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAATTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
48011 TATGAACCTTCTCTGGAAAAGATAATCCATCAAATGATG
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATG
48050 ATTTGAATCT
Statistics
Matches: 422, Mismatches: 20, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
112 2 0.00
113 372 0.88
116 48 0.11
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
Found at i:48951 original size:84 final size:84
Alignment explanation
Indices: 48780--49344 Score: 1078
Period size: 84 Copynumber: 6.7 Consensus size: 84
48770 GTAATTTTTA
* * *
48780 CCAAACCAGATTAGATAACTCAAAGAACACTTCCAAAAGATGCTATTG-GCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
48844 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
48863 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
48928 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
*
48947 CCAAATCAGATCAGATAACTCAAAGAATACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
49012 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
49031 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
49096 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
49115 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
49180 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
49199 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
49264 AATTCAATGATTGGTTCTG
66 AATTCAATGATTGGTTCTG
*
49283 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTATTGAGCAAATTCATCTT
1 CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTT
49345 TCAGTTAATG
Statistics
Matches: 475, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
83 45 0.09
84 430 0.91
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (84 bp):
CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
AATTCAATGATTGGTTCTG
Found at i:50135 original size:19 final size:20
Alignment explanation
Indices: 50111--50152 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
50101 AATAGAAAAG
*
50111 AATAAATTGAATTTCCAA-A
1 AATAAATTGAATCTCCAATA
50130 AATAAATTGAATCTCCAATA
1 AATAAATTGAATCTCCAATA
50150 AAT
1 AAT
50153 TGAACTTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (20 bp):
AATAAATTGAATCTCCAATA
Found at i:62786 original size:21 final size:21
Alignment explanation
Indices: 62760--62808 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
62750 AGTTTGTATC
*
62760 TTCTCTGTTTTTTTTTTCTGT
1 TTCTCTGTCTTTTTTTTCTGT
62781 TTCTC--TCTTTTTTTTCTGT
1 TTCTCTGTCTTTTTTTTCTGT
*
62800 CTCTCTGTC
1 TTCTCTGTC
62809 CCGTTCTCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 17 0.71
21 7 0.29
ACGTcount: A:0.00, C:0.22, G:0.08, T:0.69
Consensus pattern (21 bp):
TTCTCTGTCTTTTTTTTCTGT
Found at i:63285 original size:3 final size:3
Alignment explanation
Indices: 63277--63341 Score: 112
Period size: 3 Copynumber: 21.7 Consensus size: 3
63267 AATATATATT
*
63277 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
63325 TAT TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
63342 TGGATAAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:63645 original size:3 final size:3
Alignment explanation
Indices: 63637--63665 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63627 GCAATATCCT
63637 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63666 TGTTCTCTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64583 original size:25 final size:25
Alignment explanation
Indices: 64549--64597 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
64539 CGGAGGCGAA
64549 CATGTTCTGTTCTATTGGCATTGAG
1 CATGTTCTGTTCTATTGGCATTGAG
64574 CATGTTCTGTTCTATTGGCATTGA
1 CATGTTCTGTTCTATTGGCATTGA
64598 AGTAAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.45
Consensus pattern (25 bp):
CATGTTCTGTTCTATTGGCATTGAG
Found at i:66827 original size:23 final size:23
Alignment explanation
Indices: 66801--66848 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
66791 ATAAAGTACA
* *
66801 ATAACATACTAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
66824 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
66847 AT
1 AT
66849 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:66959 original size:22 final size:22
Alignment explanation
Indices: 66925--66969 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
66915 TATTATATTG
*
66925 AAAGTATCCATACTT-TTTATAA
1 AAAGGATCCATACTTCTTT-TAA
*
66947 AAAGGATCGATACTTCTTTTAA
1 AAAGGATCCATACTTCTTTTAA
66969 A
1 A
66970 GTTATGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
AAAGGATCCATACTTCTTTTAA
Found at i:67304 original size:23 final size:23
Alignment explanation
Indices: 67278--67336 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
67268 AACCACTACC
67278 TATTACATTATATAAACGATACA
1 TATTACATTATATAAACGATACA
* * *
67301 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACA
*
67324 TATTACATCATAT
1 TATTACATTATAT
67337 GTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACA
Found at i:67794 original size:39 final size:39
Alignment explanation
Indices: 67740--67826 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
67730 TCAAGTTGTA
*
67740 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
67779 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
67818 GATTTTGAT
1 GATTTTGAT
67827 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:68109 original size:18 final size:18
Alignment explanation
Indices: 68086--68122 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68076 CGAAATATAT
68086 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
68104 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
68122 A
1 A
68123 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:68538 original size:25 final size:25
Alignment explanation
Indices: 68510--68560 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
68500 ATTTTCCAAA
*
68510 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
68535 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
68560 T
1 T
68561 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:68865 original size:23 final size:23
Alignment explanation
Indices: 68839--68901 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
68829 ATATAACCAC
68839 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
68862 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
68885 TACCTATTACATCATAT
1 TACCTATTACATTATAT
68902 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:69358 original size:23 final size:23
Alignment explanation
Indices: 69329--69391 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
69319 ATATAACCAC
69329 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* * *
69352 TATCTATTACATTATATAAGCGT
1 TACCTATTACATTATATAAACGA
*
69375 TACCTATTACATCATAT
1 TACCTATTACATTATAT
69392 GTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:69434 original size:22 final size:22
Alignment explanation
Indices: 69409--69456 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
69399 TATTATATTG
69409 AAAGTG-TCCATACTTTGTATAA
1 AAAGTGATCCATACTTT-TATAA
* *
69431 AAAG-GATCGATACTTTTTTAA
1 AAAGTGATCCATACTTTTATAA
69452 AAAGT
1 AAAGT
69457 TATGTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (22 bp):
AAAGTGATCCATACTTTTATAA
Found at i:69583 original size:490 final size:490
Alignment explanation
Indices: 68663--69738 Score: 2098
Period size: 490 Copynumber: 2.2 Consensus size: 490
68653 ATATTTAGAA
68663 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
68728 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCTACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
68793 TATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAA
68858 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATGTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATGTTTACCTATTATATTGAAAG
* *
68923 TGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGTTTCAATT
261 TGTCCATACTTTGTATAAAAAGGATCGATACTTTTTTAAAAAGTTATGTAATTTATGTTTCAATT
68988 TTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
326 TTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
69053 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAACATTAACCAA
391 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAACATTAACCAA
69118 AGATAATAATAAATATGTAATATATATGTTTATTG
456 AGATAATAATAAATATGTAATATATATGTTTATTG
69153 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
69218 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
*
69283 TATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAA
* *
69348 ACGATATCTATTACATTATATAAGCGTTACCTATTACATCATATGTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATGTTTACCTATTATATTGAAAG
69413 TGTCCATACTTTGTATAAAAAGGATCGATACTTTTTTAAAAAGTTATGTAATTTATGTTTCAATT
261 TGTCCATACTTTGTATAAAAAGGATCGATACTTTTTTAAAAAGTTATGTAATTTATGTTTCAATT
69478 TTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
326 TTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
69543 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAACATTAACCAA
391 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAACATTAACCAA
69608 AGATAATAATAAATATGTAATATATATGTTTATTG
456 AGATAATAATAAATATGTAATATATATGTTTATTG
69643 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
69708 AAATTAATATCTTAAAACTCACTCAAAAGAT
66 AAATTAATATCTTAAAACTCACTCAAAAGAT
69739 GTATATACCT
Statistics
Matches: 580, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
490 580 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (490 bp):
TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
TATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAA
ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATGTTTACCTATTATATTGAAAG
TGTCCATACTTTGTATAAAAAGGATCGATACTTTTTTAAAAAGTTATGTAATTTATGTTTCAATT
TTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAACATTAACCAA
AGATAATAATAAATATGTAATATATATGTTTATTG
Found at i:69794 original size:25 final size:25
Alignment explanation
Indices: 69737--69802 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
69727 CACTCAAAAG
*
69737 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
69762 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
69787 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
69803 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:72795 original size:23 final size:23
Alignment explanation
Indices: 72765--72829 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
72755 AAAAATGATA
72765 GATACCTATTACATTATATAAAC
1 GATACCTATTACATTATATAAAC
*
72788 GATACCTATTACATTATATAAGC
1 GATACCTATTACATTATATAAAC
* *
72811 GCTACCTATTACATCATAT
1 GATACCTATTACATTATAT
72830 TTTTACCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.35
Consensus pattern (23 bp):
GATACCTATTACATTATATAAAC
Found at i:74436 original size:9 final size:9
Alignment explanation
Indices: 74422--74501 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
74412 CTTGTTTGGA
74422 TCATCATCT
1 TCATCATCT
74431 TCATCATCAT
1 TCATCATC-T
*
74441 CATCATCATCG
1 --TCATCATCT
74452 TCATCATCT
1 TCATCATCT
* *
74461 TCATCGTCA
1 TCATCATCT
* * *
74470 GCTTCATCG
1 TCATCATCT
*
74479 TCATCATCA
1 TCATCATCT
*
74488 TCGTCATCT
1 TCATCATCT
74497 TCATC
1 TCATC
74502 GTCAGCTTCA
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
9 45 0.83
10 1 0.02
12 8 0.15
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.38
Consensus pattern (9 bp):
TCATCATCT
Found at i:74438 original size:12 final size:12
Alignment explanation
Indices: 74425--74513 Score: 97
Period size: 12 Copynumber: 7.4 Consensus size: 12
74415 GTTTGGATCA
* *
74425 TCATCTTCATCA
1 TCATCGTCATCT
* *
74437 TCATCATCATCA
1 TCATCGTCATCT
* *
74449 TCGTCATCATCT
1 TCATCGTCATCT
*
74461 TCATCGTCAGCT
1 TCATCGTCATCT
*
74473 TCATCGTCATCA
1 TCATCGTCATCT
74485 TCATCGTCATCT
1 TCATCGTCATCT
*
74497 TCATCGTCAGCT
1 TCATCGTCATCT
74509 TCATC
1 TCATC
74514 TTCTGCGACC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 67 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:74440 original size:6 final size:6
Alignment explanation
Indices: 74421--74501 Score: 81
Period size: 6 Copynumber: 13.5 Consensus size: 6
74411 ACTTGTTTGG
* * * *
74421 ATCATC ATCTTC ATCATC ATCATC ATCATC GTCATC ATCTTC ATCGTC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
* * * * *
74469 AGCTTC ATCGTC ATCATC ATCGTC ATCTTC ATC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATC
74502 GTCAGCTTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (6 bp):
ATCATC
Found at i:74477 original size:36 final size:36
Alignment explanation
Indices: 74437--74513 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
74427 ATCTTCATCA
*
74437 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
* *
74473 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
74509 TCATC
1 TCATC
74514 TTCTGCGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:74516 original size:6 final size:6
Alignment explanation
Indices: 74425--74516 Score: 76
Period size: 6 Copynumber: 15.3 Consensus size: 6
74415 GTTTGGATCA
* * * * * * *
74425 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG TCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * * *
74473 TCATCG TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
74517 TGCGACCGCT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:76640 original size:199 final size:199
Alignment explanation
Indices: 75985--77335 Score: 2493
Period size: 199 Copynumber: 6.8 Consensus size: 199
75975 TTTAAATTAG
*
75985 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTCGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
76049 CTTATACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
76114 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76179 AAAA
196 AAAA
76183 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
76248 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76312 CGACAC-TTTTATATATGGATCGACACTTTATGGTTGCACCCTG-TTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76375 AAAA
196 AAAA
* *
76379 TATCGACACAAACTAAAATAGTATCTACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
76444 CTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76509 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76574 AAAA
196 AAAA
*
76578 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
76643 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76708 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76773 AAAA
196 AAAA
76777 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
76842 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76907 CGACAC-TTTT-TATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC-
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76969 AAAA
196 AAAA
*
76973 -ATCGACACAAACTAAAATAGTGTCGATACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
77037 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
77102 CGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
77167 AAAA
196 AAAA
77171 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
77236 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
* *
77301 TCGATAGTTTTTATATATGGATCGACACTTTATGG
130 TCGACACTTTTTATATATGGATCGACACTTTATGG
77336 CCATATTGTA
Statistics
Matches: 1120, Mismatches: 24, Indels: 16
0.97 0.02 0.01
Matches are distributed among these distances:
195 134 0.12
196 135 0.12
197 165 0.15
198 92 0.08
199 546 0.49
200 48 0.04
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (199 bp):
TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
AAAA
Found at i:77139 original size:394 final size:398
Alignment explanation
Indices: 75985--77335 Score: 2502
Period size: 394 Copynumber: 3.4 Consensus size: 398
75975 TTTAAATTAG
*
75985 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTCGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
76049 CTTATACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76114 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
76179 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
76244 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGTTTTTG
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
*
76308 GGATCGACAC-TTTTATATATGGATCGACACTTTATGGTTGCACCCTG-TTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
76371 AACAAAAA
391 AACAAAAA
* *
76379 TATCGACACAAACTAAAATAGTATCTACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
76444 CTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
76509 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
*
76574 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
76639 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
*
76704 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
76769 AACAAAAA
391 AACAAAAA
76777 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
76842 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
76907 CGACAC-TTTT-TATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC-
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
*
76969 AAAA-ATCGACACAAACTAAAATAGTGTCGATACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
77033 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
*
77098 GGATCGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
77163 AACAAAAA
391 AACAAAAA
77171 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
77236 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
* *
77301 TCGATAGTTTTTATATATGGATCGACACTTTATGG
130 TCGACACTTTTTATATATGGATCGACACTTTATGG
77336 CCATATTGTA
Statistics
Matches: 930, Mismatches: 20, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
394 324 0.35
395 303 0.33
396 85 0.09
397 61 0.07
398 157 0.17
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (398 bp):
TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACA
AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
AACAAAAA
Found at i:77291 original size:594 final size:594
Alignment explanation
Indices: 75985--77335 Score: 2521
Period size: 594 Copynumber: 2.3 Consensus size: 594
75975 TTTAAATTAG
*
75985 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTCGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
76049 CTTATACCGGTTAGATTGAAAAATTACATATTATATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
76114 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76179 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
76244 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTGGGTTCGATGTTTTTGG
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTGGGTTCGATGTTTTTGG
76309 GATCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTCCATTCATTCTGGAAC
326 GATCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTCCATTCATTCTGGAAC
*
76374 AAAAATATCGACACAAACTAAAATAGTATCTACACATTATTTAGACATATTCTCTCATAAAACCG
391 AAAAATATCGACACAAACTAAAATAGTATCGACACATTATTTAGACATATTCTCTCATAAAACCG
76439 GTATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTT
456 GTATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTT
* *
76504 GGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTG
521 GGGATCGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTG
76569 GAACAAAAA
586 GAACAAAAA
*
76578 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
76643 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
*
76708 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCATCCTGTTTTCCATTCATTCTGGAACA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
76773 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
76838 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTG
261 TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGTTTTTG
76903 GGATCGACACTTTT-TATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGA
325 GGATCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTG-TTTCCATTCATTCTGGA
* *
76967 AC-AAAA-ATCGACACAAACTAAAATAGTGTCGATACATTATTTAGACATATTCTCTCATAAAAC
389 ACAAAAATATCGACACAAACTAAAATAGTATCGACACATTATTTAGACATATTCTCTCATAAAAC
*
77030 CGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTT
454 CGGTATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTT
77095 TTGGGATCGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTC
519 TTGGGATCGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTC
77160 TGGAACAAAAA
584 TGGAACAAAAA
77171 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
77236 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
* *
77301 TCGATAGTTTTTATATATGGATCGACACTTTATGG
130 TCGACACTTTTTATATATGGATCGACACTTTATGG
77336 CCATATTGTA
Statistics
Matches: 739, Mismatches: 15, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
593 321 0.43
594 366 0.50
595 52 0.07
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (594 bp):
TATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACA
AAAATATCGACACAAACTAAAATAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTGGGTTCGATGTTTTTGG
GATCGACACTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTCCATTCATTCTGGAAC
AAAAATATCGACACAAACTAAAATAGTATCGACACATTATTTAGACATATTCTCTCATAAAACCG
GTATACTTGTACCGATTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTT
GGGATCGACACTTTTTATATACGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTG
GAACAAAAA
Found at i:77496 original size:19 final size:19
Alignment explanation
Indices: 77450--77498 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
77440 TTATATTCAC
*
77450 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
77469 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
77488 ATACAAAATTA
1 ATACAAAATTA
77499 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:79321 original size:32 final size:33
Alignment explanation
Indices: 79285--79349 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
79275 CATCTTAATA
* *
79285 TCACCCCTTAACACC-CAACTTCTTTCTCCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
*
79317 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
79350 CCATCTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.22, C:0.48, G:0.00, T:0.31
Consensus pattern (33 bp):
TCACCCCTCAACACCTCAACTTCTTTCACCACT
Found at i:79406 original size:21 final size:21
Alignment explanation
Indices: 79381--79424 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
79371 CCCCTTATGC
79381 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
79402 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
79423 CT
1 CT
79425 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:81814 original size:20 final size:20
Alignment explanation
Indices: 81787--81833 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81777 TCCGGTAACG
81787 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
81806 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
81827 TTTTACC
1 TTTTACC
81834 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:82581 original size:230 final size:229
Alignment explanation
Indices: 81882--82603 Score: 1340
Period size: 228 Copynumber: 3.1 Consensus size: 229
81872 ACTTTTATAC
81882 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
81947 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC-ACAAA
82012 ATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
130 ATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
82077 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
195 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
* *
82112 GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGCTTCAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
82176 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
82241 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
82306 GATAATAATAAATATGTTTTCCACAGTGAAATAA
196 GATAATAATAAATATGTTTTCCACAGTGAAATAA
82340 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
82405 TTTTTAATAGTGTTTCATGTTTTCCACCTACAAATATTAATTTAATAATTTCATTTACACACAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTAC-AATATTAATTTAATAATTTCATTTACACACAAA
*
82470 ATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCA
130 ATTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCA
*
82535 AAGATAATAATAAATATATTTT-CACAGTGAAATAA
194 AAGATAATAATAAATATGTTTTCCACAGTGAAATAA
* *
82570 GTATGGACACTTTTATAAAAAAGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
82604 ACAATATAAT
Statistics
Matches: 480, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
228 164 0.34
229 94 0.20
230 149 0.31
231 73 0.15
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (229 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
GATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:83519 original size:34 final size:31
Alignment explanation
Indices: 83439--83527 Score: 88
Period size: 34 Copynumber: 2.7 Consensus size: 31
83429 GTTAGTATTT
* * *
83439 TTTAAATAGTTATTATATTTTATATTAATATA
1 TTTATATAATTATTAT-TTTTTTATTAATATA
* *
83471 TTTATGTAAATATTATTTTTTTATTAAAATAATA
1 TTTATATAATTATTATTTTTTTATT--AAT-ATA
*
83505 TTTATATAATTATTATTTATTTA
1 TTTATATAATTATTATTTTTTTA
83528 GAATTATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 8 0.17
32 12 0.26
33 3 0.07
34 23 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTATATAATTATTATTTTTTTATTAATATA
Found at i:83703 original size:28 final size:28
Alignment explanation
Indices: 83672--83737 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
83662 TTAATATTTA
* *
83672 AATTTATTTTTATTTTAAATTTATTATG
1 AATTTATATTAATTTTAAATTTATTATG
* *
83700 AATTTATATTAATTTTAATTTTTTTAT-
1 AATTTATATTAATTTTAAATTTATTATG
*
83727 AATGTATATTA
1 AATTTATATTA
83738 TTTAGGATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
27 10 0.30
28 23 0.70
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (28 bp):
AATTTATATTAATTTTAAATTTATTATG
Found at i:83705 original size:17 final size:17
Alignment explanation
Indices: 83667--83705 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
83657 TAATGTTAAT
* *
83667 ATTTAAATTTATTTTTA
1 ATTTAAATTTATTATGA
*
83684 TTTTAAATTTATTATGA
1 ATTTAAATTTATTATGA
83701 ATTTA
1 ATTTA
83706 TATTAATTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTAAATTTATTATGA
Found at i:87916 original size:228 final size:228
Alignment explanation
Indices: 87412--88075 Score: 1201
Period size: 225 Copynumber: 2.9 Consensus size: 228
87402 GTTATATTGT
* * *
87412 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
*
87476 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAA
* *
87541 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTA
130 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-
87606 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
194 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
87641 AAAGTATATATCATTTTTATAAAAGTGTCTATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
87706 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
87771 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
87836 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
87869 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATA--T-TTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
87931 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
87996 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATCTT
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA--TT
88061 AAAAAAATTGAAACA
194 AAAAAAATTGAAACA
88076 CTATTAATTT
Statistics
Matches: 424, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
225 131 0.31
226 1 0.00
227 17 0.04
228 90 0.21
229 114 0.27
230 71 0.17
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:88531 original size:23 final size:23
Alignment explanation
Indices: 88500--88563 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
88490 ATAGGTAAAA
*
88500 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
88523 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
88546 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
88564 TTGTAAAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:89015 original size:23 final size:23
Alignment explanation
Indices: 88984--89047 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
88974 ATAGGTAAAA
*
88984 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
89007 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
89030 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
89048 TTGTAAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:89493 original size:20 final size:23
Alignment explanation
Indices: 89465--89525 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 23
89455 ATAGGTAAAA
*
89465 ATATGATGTAATAGGTAGCG-CT
1 ATATAATGTAATAGGTAGCGTCT
* *
89487 -TAT-ATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGTCT
89508 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
89526 TTGTAAAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 14 0.42
21 4 0.12
22 3 0.09
23 12 0.36
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTCT
Found at i:89967 original size:23 final size:23
Alignment explanation
Indices: 89936--89999 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
89926 ATAGGTAAAA
*
89936 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
89959 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
89982 ATACAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
90000 TTGTAAAGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:90154 original size:953 final size:965
Alignment explanation
Indices: 88092--90404 Score: 4256
Period size: 953 Copynumber: 2.4 Consensus size: 965
88082 ATTTTTTGTG
88092 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
* *
88157 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTTTAACGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
*
88222 CGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
88287 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
*
88352 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAAA
261 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
88417 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
326 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
88482 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
391 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
*
88547 TATAATGTAATAGGTAGTTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATT
456 TATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATT
88612 GTGGAAAACATTAATTTAAGGTTATCGTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAG
521 GTGGAAAACATTAATTTAAGGTTATCGTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAG
*
88677 GCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAAAATA
586 GCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAAT-AAAACA
88742 TATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTA
650 TATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTA
*
88807 TAAAATATCAAAACAATCAAATATTTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGT
715 TAAAATATCAAAACAATCAAATATATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGT
* * * * *
88872 GGAAAACATGAAACACTGTTAAAAAAAGTTGGAACATAAATTACATAACTTTTAAAAAAAGTATC
780 GGAAAACATAAAACAATATTAAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAAAGTATC
88937 GATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
845 GATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
*
89002 CGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTA
910 CGCTTATATAATGTAATAGGTATCGTTTATACAATGTAATAGGTAGTTGTAAAGTA
*
89058 TCTATCATTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
89123 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
* *
89188 CAATATATATTATTATTATATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
89253 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
89318 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAA
261 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
89382 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
326 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
89447 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGC-T-TAT-ATGTAATAGGTATCGTTTA
391 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
89509 TATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATT
456 TATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATT
89574 GTGGAAAACATTAATTTAAGGTTATCGTTTGAGTGAATTTTAAGATATTAA-TTAGTAA-T-TAG
521 GTGGAAAACATTAATTTAAGGTTATCGTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAG
*
89636 GCGTCTAATGATTTATTTTTTACGTTAC-G-ATATATTATTATTAAATTAAAAATAAT-AAACAT
586 GCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAAACAT
* *
89698 ATATTACATATTTA-TATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTAT
651 ATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTAT
89762 AAAATATCAAAACAATCAAATA-ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTG
716 AAAATATCAAAACAATCAAATATATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTG
* *
89826 GAAAACATAAAATAATATTAAAAAAAATTGAAACATAAATTACATAAC-TTTAAAAAAAGTGTCG
781 GAAAACATAAAACAATATTAAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAAAGTATCG
89890 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
846 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
89955 GCTTATATAATGTAATAGGTATCGTTTATACAATGTAATAGGTAGTTGTAAAGTA
911 GCTTATATAATGTAATAGGTATCGTTTATACAATGTAATAGGTAGTTGTAAAGTA
* *
90010 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTTCACTGTGGAAAATATTAATTTAAGGTTATC
1 TCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTTCATTGTGGAAAACATTAATTTAAGGTTATC
* *
90075 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
65 GTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
90140 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
130 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
90205 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
195 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
* *
90270 TTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAA
260 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
* *
90335 ATTGAAACATAAATTACATAACTTTAAAAAAATTATCGATCCTTTTTATAAAAAGTATGGACACT
325 ATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACT
90400 TTCAA
390 TTCAA
90405 CATATTATAA
Statistics
Matches: 1313, Mismatches: 32, Indels: 16
0.96 0.02 0.01
Matches are distributed among these distances:
952 161 0.12
953 364 0.28
954 144 0.11
955 19 0.01
957 26 0.02
958 1 0.00
959 31 0.02
960 1 0.00
961 7 0.01
962 134 0.10
963 3 0.00
964 1 0.00
965 111 0.08
966 310 0.24
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (965 bp):
TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
TATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATT
GTGGAAAACATTAATTTAAGGTTATCGTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAG
GCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAAACAT
ATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTAT
AAAATATCAAAACAATCAAATATATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTG
GAAAACATAAAACAATATTAAAAAAAATTGAAACATAAATTACATAACTTTTAAAAAAAGTATCG
ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
GCTTATATAATGTAATAGGTATCGTTTATACAATGTAATAGGTAGTTGTAAAGTA
Found at i:90304 original size:483 final size:482
Alignment explanation
Indices: 88092--90404 Score: 4245
Period size: 484 Copynumber: 4.8 Consensus size: 482
88082 ATTTTTTGTG
88092 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
* *
88157 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTTTAACGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
*
88222 CGATATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATTTATTATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
88287 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
*
88352 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAAA
261 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
88417 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
326 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
88482 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
391 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
*
88547 TATAATGTAATAGGTAGTTGTAAAGTG
456 TATAATGTAATAGGTAGTTGTAAAGTA
88574 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
88639 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
* *
88704 CGGTATATATTATTATTAAATTAAAAACAATAAAAATATATATTACATATTTATTATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
* * *
88769 GTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATATTTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA-ATT
*
88834 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAA
260 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
* * *
88899 GTTGGAACATAAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACAC
325 ATTGAAACATAAATTACATAAC-TTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACAC
88964 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTT
389 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTT
89029 TATATAATGTAATAGGTAGTTGTAAAGTA
454 TATATAATGTAATAGGTAGTTGTAAAGTA
*
89058 TCTATCATTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
89123 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
* *
89188 CAATATATATTATTATTATATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
89253 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
89318 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAA
261 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
89382 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
326 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
89447 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGC-T-TAT-ATGTAATAGGTATCGTTTA
391 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
89509 TATAATGTAATAGGTAGTTGTAAAGTA
456 TATAATGTAATAGGTAGTTGTAAAGTA
89536 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
1 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
89601 TTTGAGTGAATTTTAAGATATTAA-TTAGTAA-T-TAGGCGTCTAATGATTTATTTTTTACGTTA
66 TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
*
89663 CG--ATATATTATTATTAAATTAAAAATAATAAAC--ATATATTACATATTTA-TATTATCTTTG
131 CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
89723 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
196 GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
* * *
89788 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAATAATATTAAAAAAAA
261 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
89853 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
326 TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
89918 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
391 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
*
89983 TACAATGTAATAGGTAGTTGTAAAGTA
456 TATAATGTAATAGGTAGTTGTAAAGTA
* *
90010 TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTTCACTGTGGAAAATATTAATTTAAGGTTATC
1 TCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTTCATTGTGGAAAACATTAATTTAAGGTTATC
* *
90075 TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
65 GTTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTT
90140 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
130 ACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTT
90205 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
195 GGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATT
* *
90270 TTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAAAAAAA
260 TTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
* *
90335 ATTGAAACATAAATTACATAACTTTAAAAAAATTATCGATCCTTTTTATAAAAAGTATGGACACT
325 ATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACT
90400 TTCAA
390 TTCAA
90405 CATATTATAA
Statistics
Matches: 1770, Mismatches: 46, Indels: 29
0.96 0.02 0.02
Matches are distributed among these distances:
470 130 0.07
471 127 0.07
472 1 0.00
473 32 0.02
474 73 0.04
475 88 0.05
476 8 0.00
477 8 0.00
478 166 0.09
479 3 0.00
480 31 0.02
481 82 0.05
482 291 0.16
483 347 0.20
484 383 0.22
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (482 bp):
TCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCG
TTTGAGTGAATTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTA
CGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTG
GTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTT
TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
TTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTTTATAAAAAGTATGGACACTT
TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
TATAATGTAATAGGTAGTTGTAAAGTA
Found at i:93717 original size:2 final size:2
Alignment explanation
Indices: 93708--93747 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
93698 ACGTGAAAAA
93708 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93748 GACTAGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:98523 original size:23 final size:23
Alignment explanation
Indices: 98475--98523 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
98465 ATAATTATGC
*
98475 TTTTATGACATATTTTCTTCTGT
1 TTTTATGACATATTTTCTTCTAT
98498 TTTTATGATACAT-TTTTCTT-TAT
1 TTTTATG--ACATATTTTCTTCTAT
98521 TTT
1 TTT
98524 GTTATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 12 0.52
24 7 0.30
25 4 0.17
ACGTcount: A:0.18, C:0.10, G:0.06, T:0.65
Consensus pattern (23 bp):
TTTTATGACATATTTTCTTCTAT
Found at i:107420 original size:30 final size:32
Alignment explanation
Indices: 107385--107460 Score: 88
Period size: 33 Copynumber: 2.5 Consensus size: 32
107375 ATAGTTATTA
*
107385 TATTTTATATT-AAT-ATATTTATGTAAATAT
1 TATTTTATATTAAATAATATTTATATAAATAT
* *
107415 TATTTTTTATTAAAATAATATTTATATAATTAT
1 TATTTTATATT-AAATAATATTTATATAAATAT
107448 TA-TTTAT-TTAAAT
1 TATTTTATATTAAAT
107461 TTATTAATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 14 0.36
31 2 0.05
32 7 0.18
33 16 0.41
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (32 bp):
TATTTTATATTAAATAATATTTATATAAATAT
Found at i:109216 original size:21 final size:21
Alignment explanation
Indices: 109186--109233 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
109176 GCAGGGGTAC
* *
109186 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
109207 ATGCCAAGCCCACTAGTTCAT
1 ATGCCAAGCCCACCACTTCAT
109228 ATGCCA
1 ATGCCA
109234 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:109263 original size:21 final size:21
Alignment explanation
Indices: 109237--109309 Score: 112
Period size: 21 Copynumber: 3.5 Consensus size: 21
109227 TATGCCATCT
*
109237 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCTAGC
109258 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCTAGC
*
109279 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATTCCTAGC
109300 CCGCAGGGTT
1 CCGCAGGGTT
109310 TCATACCATA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 2 0.04
21 44 0.92
22 2 0.04
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCTAGC
Found at i:109935 original size:34 final size:34
Alignment explanation
Indices: 109830--109936 Score: 160
Period size: 34 Copynumber: 3.1 Consensus size: 34
109820 ATAAATGTTT
*
109830 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
* *
109864 TAAAAATAAAAATAATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
* * *
109898 TTAAAATATAAATTATAGTATTCGAAATTTAACA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
109932 TTAAA
1 TTAAA
109937 TTTCAACTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (34 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAAA
Found at i:110557 original size:128 final size:128
Alignment explanation
Indices: 110329--111319 Score: 1748
Period size: 128 Copynumber: 7.7 Consensus size: 128
110319 AGAATCCATC
* *
110329 TAGTGTCCCCGAGGGACATGAGTGACATAATAGAGCAATGATAACATATTCTATGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * * *
110394 AGAAGGCGCGCCCCCGGGAACGCACCTTCAAGTCCCATGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
** * *
110457 TAGTGTCATCGACGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGATAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
110522 GGAAGGCGCGCCCCCAGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
*
110585 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
110650 GGAAGACGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
110713 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
110778 GGAAGGCGCGCCCTCAGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
* * *
110841 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGACAATGATAACATATTCTCTTAAAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * *
110906 GGAAGGCACGCCCCCGGGAACGCGCCTTTAAGTCCCATGAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
110969 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
111034 GGAAGGCGCGCCCCCGGGAACACGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
111097 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
111162 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATAAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
* *
111225 TAGTGTCCTCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAGAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
111290 GGAAGGCGCGCCTCCGGGAACGCGCCTTCA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCA
111320 TGTGAATAGT
Statistics
Matches: 821, Mismatches: 42, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
128 821 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (128 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTAATGATATGAA
Found at i:111413 original size:8 final size:8
Alignment explanation
Indices: 111400--111437 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
111390 TCACAAGCTT
111400 TCAAATTC
1 TCAAATTC
111408 TCAAATTC
1 TCAAATTC
* *
111416 CCAAACTC
1 TCAAATTC
111424 T-AAATTC
1 TCAAATTC
111431 TCAAATT
1 TCAAATT
111438 ATCTGAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:115887 original size:37 final size:37
Alignment explanation
Indices: 115813--115887 Score: 84
Period size: 37 Copynumber: 2.0 Consensus size: 37
115803 TACTATTTTT
**
115813 AATTTATATATTTTCTTTAAAAATTTTAAATTTATAA
1 AATTTATATATTTTCTTTAAAAATTTTAAATAGATAA
115850 AATTTATATAATATTT-TTTACAAAA-TTTAAA-AGATAA
1 AATTTATAT-AT-TTTCTTTA-AAAATTTTAAATAGATAA
115887 A
1 A
115888 TAGGTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
37 14 0.42
38 12 0.36
39 7 0.21
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (37 bp):
AATTTATATATTTTCTTTAAAAATTTTAAATAGATAA
Found at i:116782 original size:16 final size:16
Alignment explanation
Indices: 116761--116791 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
116751 ATAAACACAT
116761 AATTAGAAATATAATA
1 AATTAGAAATATAATA
116777 AATTAGAAATATAAT
1 AATTAGAAATATAAT
116792 TATAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
AATTAGAAATATAATA
Found at i:117187 original size:20 final size:20
Alignment explanation
Indices: 117164--117215 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
117154 AACGCGATCC
117164 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
117184 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
117204 CCAAAATCGCAA
1 CCAGAATCGCAA
117216 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:117232 original size:21 final size:20
Alignment explanation
Indices: 117206--117303 Score: 70
Period size: 21 Copynumber: 4.8 Consensus size: 20
117196 ATCAGTTTCC
117206 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTG
* * * *
117227 AAAATCGCGATGCGATAGTAG
1 AAAATCGCAACGCGAT-TTTG
* ** *
117248 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTT-G
* * *
117269 ATAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTG
117289 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
117304 ACACATAAAT
Statistics
Matches: 57, Mismatches: 18, Indels: 5
0.71 0.22 0.06
Matches are distributed among these distances:
20 15 0.26
21 42 0.74
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.22
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTG
Found at i:117296 original size:20 final size:20
Alignment explanation
Indices: 117271--117464 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
117261 GATTTTCCAT
* *
117271 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
117291 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
117311 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
117331 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
117351 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
117371 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
117391 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
117411 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
117432 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
117452 AATCGCAACGCGA
1 AATCGCAACGCGA
117465 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:117316 original size:40 final size:39
Alignment explanation
Indices: 117267--117464 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
117257 TTGCGATTTT
* ** *
117267 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
117305 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
117346 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
117386 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
117425 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
117465 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:117354 original size:60 final size:60
Alignment explanation
Indices: 117271--117463 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
117261 GATTTTCCAT
* ** * *
117271 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
117331 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
117391 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
117452 AATCGCAACGCG
1 AATCGCAACGCG
117464 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:117634 original size:22 final size:21
Alignment explanation
Indices: 117609--117662 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
117599 CTCTCTACGG
*
117609 CGAAGAAATCTGTCCCCATCTC
1 CGAAGAAATCCGT-CCCATCTC
**
117631 CGAAGATTTCCGTCCCATCTC
1 CGAAGAAATCCGTCCCATCTC
**
117652 CGGCGAAATCC
1 CGAAGAAATCC
117663 CTCACAACCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.22
Consensus pattern (21 bp):
CGAAGAAATCCGTCCCATCTC
Found at i:117878 original size:32 final size:32
Alignment explanation
Indices: 117841--117909 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
117831 ATTTCACTTA
*
117841 GATTTCATTTCGCGTTACGATTCTGTCGTTGC
1 GATTTCATTTCGCGTTACGATTCTCTCGTTGC
* *
117873 GATTTCATTTCGCGTTGCTATTCTCTCGTTGC
1 GATTTCATTTCGCGTTACGATTCTCTCGTTGC
117905 GATTT
1 GATTT
117910 TCAAGTTAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (32 bp):
GATTTCATTTCGCGTTACGATTCTCTCGTTGC
Found at i:117890 original size:18 final size:18
Alignment explanation
Indices: 117841--117890 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
117831 ATTTCACTTA
*
117841 GATTTCATTTCGCGTTAC
1 GATTTCATTTCGCGTTGC
*
117859 GA-TTC-TGT--CGTTGC
1 GATTTCATTTCGCGTTGC
117873 GATTTCATTTCGCGTTGC
1 GATTTCATTTCGCGTTGC
117891 TATTCTCTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 8
0.69 0.08 0.22
Matches are distributed among these distances:
14 7 0.28
15 3 0.12
16 4 0.16
17 3 0.12
18 8 0.32
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (18 bp):
GATTTCATTTCGCGTTGC
Found at i:118051 original size:14 final size:14
Alignment explanation
Indices: 118032--118086 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
118022 AGAATGACTG
118032 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
118046 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
118065 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
118079 TCGCAACG
1 TCGCAACG
118087 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:118069 original size:33 final size:33
Alignment explanation
Indices: 118032--118102 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
118022 AGAATGACTG
**
118032 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
118065 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
118098 TCGCA
1 TCGCA
118103 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:118120 original size:19 final size:19
Alignment explanation
Indices: 118098--118195 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
118088 GAAACCAAAA
*
118098 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
118117 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
118131 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
118150 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
118164 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
118183 TCGCGTTGCGATT
1 TCGCGTTGCGATT
118196 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:118139 original size:14 final size:14
Alignment explanation
Indices: 118120--118209 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
118110 TTTCATTTCG
118120 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
118134 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
118153 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
118167 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
118184 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
118200 CGTTGCGATT
1 CGTTGCGATT
118210 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:118145 original size:33 final size:33
Alignment explanation
Indices: 118103--118217 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
118093 CAAAATCGCA
118103 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
118136 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
118169 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
118202 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
118218 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:120298 original size:93 final size:93
Alignment explanation
Indices: 119910--120473 Score: 1089
Period size: 93 Copynumber: 6.1 Consensus size: 93
119900 TAGATTGCTT
*
119910 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
119975 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
120003 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
120067 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
120095 AGTAAATTTGTTCGGTTGCTGCTAATTCTGCTAAACTGTGTATTCTTTAACACTGTG-AATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
120158 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
120186 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
120251 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
120279 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
120344 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
120372 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
120437 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
120465 AGTAAATTT
1 AGTAAATTT
120474 ATCCATTCAA
Statistics
Matches: 466, Mismatches: 3, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
91 90 0.19
92 90 0.19
93 286 0.61
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:120637 original size:19 final size:19
Alignment explanation
Indices: 120517--120631 Score: 141
Period size: 19 Copynumber: 6.3 Consensus size: 19
120507 TAGTTTACTT
* *
120517 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
120537 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
120556 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
120575 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
120589 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
120608 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
120627 TCGCA
1 TCGCA
120632 TTGCGATTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
14 9 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 55 0.66
20 13 0.16
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:120649 original size:19 final size:19
Alignment explanation
Indices: 120627--120761 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
120617 GAAACCAAAA
*
120627 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
120646 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
120662 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
120679 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
*
120695 T--CGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
**
120712 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
120731 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
120751 TCGTGTTGCGA
1 TCGCGTTGCGA
120762 AAGTAAACTA
Statistics
Matches: 94, Mismatches: 11, Indels: 21
0.75 0.09 0.17
Matches are distributed among these distances:
14 15 0.16
16 10 0.11
17 11 0.12
19 46 0.49
20 12 0.13
ACGTcount: A:0.12, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:120668 original size:14 final size:14
Alignment explanation
Indices: 120649--120705 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
120639 TTTCATTTCG
120649 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
120663 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
120680 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
120696 CGTTGCGATT
1 CGTTGCGATT
120706 TTAATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:120674 original size:33 final size:33
Alignment explanation
Indices: 120632--120724 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
120622 CAAAATCGCA
*
120632 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
120665 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
120698 TTGCGATTTTAATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
120725 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:122593 original size:12 final size:12
Alignment explanation
Indices: 122578--122613 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
122568 TGATTCAATA
122578 GTTTAATTGATT
1 GTTTAATTGATT
**
122590 GTTTTTTTGATT
1 GTTTAATTGATT
122602 GTTTAATTGATT
1 GTTTAATTGATT
122614 TGTAAAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.17, T:0.64
Consensus pattern (12 bp):
GTTTAATTGATT
Found at i:122713 original size:14 final size:14
Alignment explanation
Indices: 122678--122713 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
122668 GATTGTTTAA
122678 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
*
122692 ATGA-TTGTAAAAG
1 TTGATTTGTAAAAG
122705 TTGATTTGT
1 TTGATTTGT
122714 GTAATTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:122836 original size:19 final size:19
Alignment explanation
Indices: 122820--122921 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
122810 AAAAATGACT
122820 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
122839 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
122858 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
122872 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
122891 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
122911 ATCGCAATGCG
1 ATCGCAATGCG
122922 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:122974 original size:19 final size:19
Alignment explanation
Indices: 122950--123256 Score: 376
Period size: 19 Copynumber: 17.4 Consensus size: 19
122940 GATTATCTCG
122950 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
122969 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
122988 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
123002 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
123021 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
123040 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
123059 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
123078 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
123092 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
123111 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
123130 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
123144 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
123163 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
123182 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
123196 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
123216 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
123230 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
123249 TTGCGATT
1 TTGCGATT
123257 GTATTTTCCG
Statistics
Matches: 252, Mismatches: 10, Indels: 52
0.80 0.03 0.17
Matches are distributed among these distances:
14 35 0.14
16 31 0.12
17 27 0.11
18 3 0.01
19 144 0.57
20 12 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:123025 original size:71 final size:71
Alignment explanation
Indices: 122950--123189 Score: 373
Period size: 71 Copynumber: 3.4 Consensus size: 71
122940 GATTATCTCG
122950 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
123015 TTCGCA
66 TTCGCA
*
123021 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG--TTGCGATT
*
123084 TTC-TGTCG--
61 TTCATTTCGCA
*
123092 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
123157 TTCGCA
66 TTCGCA
123163 TTGCGATTTTCATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
123190 CTCTCGTTGC
Statistics
Matches: 154, Mismatches: 5, Indels: 20
0.86 0.03 0.11
Matches are distributed among these distances:
66 6 0.04
68 7 0.05
69 6 0.04
71 115 0.75
73 6 0.04
74 8 0.05
76 6 0.04
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (71 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
TTCGCA
Done.