Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008075.1 Hibiscus syriacus cultivar Beakdansim tig00110577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1947163
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 10
Found at i:2817 original size:180 final size:181
Alignment explanation
Indices: 2377--3046 Score: 1169
Period size: 180 Copynumber: 3.7 Consensus size: 181
2367 TTAAAATTAC
* *
2377 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAA--ACCGACACAATA
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAGTACCGACACAATA
*
2440 TTATAAAGTGTCGATATATGTTGTAGACCTATTCGCGCATAAAACCGGTATA--TATACCGGTTA
66 TTA-AAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTA
* * *
2503 TATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
130 TATTACTAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
2555 CGATAC-TTTTTAAATCGTATCGACAC-TTTTTCTTCCAATATGGACATAAGTACCGACACAATA
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAGTACCGACACAATA
2618 TTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
66 TTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
2683 ATTACTAAATTATCTATTACATTAT-ATTATGGGTTCCGATGTGTAAATGT
131 ATTACTAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
2733 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAGTACCGACACAATA
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAGTACCGACACAATA
*
2798 TTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATATCGGTTAT
66 TTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
*
2863 ATTACTAAATTATCTCTTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATTACTAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
2914 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACAT-AAGTACCGACACAAT
2979 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGG--TATTTATACCGGTT
65 ATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
3042 ATATT
129 ATATT
3047 GCAAATTTAC
Statistics
Matches: 472, Mismatches: 11, Indels: 15
0.95 0.02 0.03
Matches are distributed among these distances:
176 22 0.05
177 66 0.14
178 48 0.10
179 56 0.12
180 125 0.26
181 92 0.19
182 18 0.04
183 45 0.10
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (181 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAGTACCGACACAATA
TTAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTAT
ATTACTAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:5008 original size:17 final size:18
Alignment explanation
Indices: 4986--5028 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
4976 ATATATCCGG
4986 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
5003 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
5023 TATCAT
1 TATCAT
5029 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:5046 original size:20 final size:19
Alignment explanation
Indices: 4991--5037 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
4981 TCCGGTATCA
4991 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
5010 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
5031 TTTTACC
1 TTTTACC
5038 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:5183 original size:20 final size:20
Alignment explanation
Indices: 5157--5202 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
5147 CACTTTTAAA
5157 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
5176 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
5197 TTTACC
1 TTTACC
5203 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:5664 original size:226 final size:223
Alignment explanation
Indices: 5266--5709 Score: 773
Period size: 226 Copynumber: 2.0 Consensus size: 223
5256 TTAAAACTGC
5266 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
*
5331 TTAATTTAATAATTTAATTTACACAAAATTTTATTTGATTGTTTTGATATTTTATAAAATATTAT
66 TTAATTTAATAATTTAATTTACACAAAATATTATTTGATTGTTTTGATATTTTATAAAATATTAT
* *
5396 TTAGAATTTAAATTAACAATATTAACCAAATATAATAATAAATATGTTTTCAACAGTGAAATAAG
131 TTAGAATTTAAATTAACAATATTAACCAAAGATAATAATAAATAT-ATTTC-ACAGTGAAATAAG
*
5461 TATGGACACTTTTATAAAAATGATATACTT
194 TATGGACACTTTTATAAAAAGGATATACTT
*
5491 TTTTGAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAAT
*
5556 ATTAATTTAATAATTTCATTTACACAAAA-ATTATTTGATTGTTTTGATATTTTATAAAATATTA
65 ATTAATTTAATAATTTAATTTACACAAAATATTATTTGATTGTTTTGATATTTTATAAAATATTA
* *
5620 TTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTCACAGTGAAATAAG
130 TTTAGAATTTAAA-TTAACAATATTAACCAAAGATAATAATAAATATATTTCACAGTGAAATAAG
5685 TATGGACACTTTTATAAAAAGGATA
194 TATGGACACTTTTATAAAAAGGATA
5710 GATAATTTAC
Statistics
Matches: 209, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
224 37 0.18
225 54 0.26
226 118 0.56
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.45
Consensus pattern (223 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
TTAATTTAATAATTTAATTTACACAAAATATTATTTGATTGTTTTGATATTTTATAAAATATTAT
TTAGAATTTAAATTAACAATATTAACCAAAGATAATAATAAATATATTTCACAGTGAAATAAGTA
TGGACACTTTTATAAAAAGGATATACTT
Found at i:6294 original size:19 final size:19
Alignment explanation
Indices: 6270--6307 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
6260 TAATAAAAAA
*
6270 AACATTTTTATATTTGCAT
1 AACATTGTTATATTTGCAT
6289 AACATTGTTATATTTGCAT
1 AACATTGTTATATTTGCAT
6308 GCCAAGTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (19 bp):
AACATTGTTATATTTGCAT
Found at i:7509 original size:29 final size:29
Alignment explanation
Indices: 7466--7548 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
7456 CTCACCTAAC
7466 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
7496 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
7525 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
7549 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:12271 original size:29 final size:29
Alignment explanation
Indices: 12228--12310 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
12218 CTCACCTAAC
12228 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
12258 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
12287 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
12311 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:13137 original size:32 final size:32
Alignment explanation
Indices: 13096--13160 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
13086 TATAATAATC
* *
13096 AATGTATGAACTTTT-AGATGAATTTTGTTGTA
1 AATGTATGAACTTTTGA-ATGAAGTTTGGTGTA
13128 AATGTATGAACTTTTGAATGAAGTTTGGTGTA
1 AATGTATGAACTTTTGAATGAAGTTTGGTGTA
13160 A
1 A
13161 TAAACAGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.43
Consensus pattern (32 bp):
AATGTATGAACTTTTGAATGAAGTTTGGTGTA
Found at i:15781 original size:7 final size:7
Alignment explanation
Indices: 15771--15797 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
15761 AAACCTCTTA
15771 TCTCCAC
1 TCTCCAC
15778 TCTCCAC
1 TCTCCAC
15785 TCTCCAC
1 TCTCCAC
15792 TCTCCA
1 TCTCCA
15798 ACTCAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (7 bp):
TCTCCAC
Found at i:18336 original size:12 final size:12
Alignment explanation
Indices: 18312--18342 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18302 TAGCGTCTTC
18312 TATTAAA-AAAA
1 TATTAAACAAAA
18323 TATTAAACAAAA
1 TATTAAACAAAA
18335 TATTAAAC
1 TATTAAAC
18343 TTTTTTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (12 bp):
TATTAAACAAAA
Found at i:20403 original size:15 final size:15
Alignment explanation
Indices: 20385--20413 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20375 TTATTTTTTA
20385 ATTTTTTTAAAATAT
1 ATTTTTTTAAAATAT
20400 ATTTTTTTAAAATA
1 ATTTTTTTAAAATA
20414 CTTTTAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTTTTAAAATAT
Found at i:28060 original size:132 final size:131
Alignment explanation
Indices: 27818--28081 Score: 492
Period size: 132 Copynumber: 2.0 Consensus size: 131
27808 GTAACTATGT
*
27818 TAATTTGTTATTATCCTTCTATGGAAACAATTGTAATTGTTGAATAGTGGATACTTTTATCTATT
1 TAATTTGTTATTATCCTTCTACGGAAACAATTGTAATTGTTGAATAGTGGATACTTTTATCTATT
27883 TTCTTCTGAACCACAGTTGAAGTTTCTTTCTACATTAGTAATTTTTACGAGGGGATGAAAGTTTT
66 TTCTTCTGAACCACAGTTGAAGTTTCTTTCTACATTAGTAATTTTTACGAGGGGATGAAAGTTTT
27948 G
131 G
27949 TAATTATGTTATTATCCTTCTACGGAAACAATTGTAATTGTTGAATAGTGGATACTTTTATCTAT
1 TAATT-TGTTATTATCCTTCTACGGAAACAATTGTAATTGTTGAATAGTGGATACTTTTATCTAT
* *
28014 TTTCTTCTGATCCACAGTTGAAGTTTCTTTCTACATTAGTAATTTTTATGAGGGGATGAAAGTTT
65 TTTCTTCTGAACCACAGTTGAAGTTTCTTTCTACATTAGTAATTTTTACGAGGGGATGAAAGTTT
28079 TG
130 TG
28081 T
1 T
28082 CTTTTAATTA
Statistics
Matches: 129, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
131 5 0.04
132 124 0.96
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (131 bp):
TAATTTGTTATTATCCTTCTACGGAAACAATTGTAATTGTTGAATAGTGGATACTTTTATCTATT
TTCTTCTGAACCACAGTTGAAGTTTCTTTCTACATTAGTAATTTTTACGAGGGGATGAAAGTTTT
G
Found at i:36136 original size:29 final size:31
Alignment explanation
Indices: 36103--36164 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 31
36093 ATTTTCACCT
36103 AACTAAATTGATGTAAACAATG-A-CATCAA
1 AACTAAATTGATGTAAACAATGAATCATCAA
*
36132 AACTAAATTGATGTAAGCAATGAATCATCAA
1 AACTAAATTGATGTAAACAATGAATCATCAA
36163 AA
1 AA
36165 TTTAGGTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 21 0.70
30 1 0.03
31 8 0.27
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (31 bp):
AACTAAATTGATGTAAACAATGAATCATCAA
Found at i:38964 original size:250 final size:257
Alignment explanation
Indices: 38463--38971 Score: 944
Period size: 250 Copynumber: 2.0 Consensus size: 257
38453 CGATGACGTA
38463 TTCGACATTCCCTTAGGTATTGAGAGAACTCGTTTGATCTATATTCTCATCCGTTGTCTATGCGC
1 TTCGACATTCCCTTAGGTATTGAGAGAACTCGTTTGATCTATATTCTCATCCGTTGTCTATGCGC
38528 AAGCAACATATCTTCTTTCCCACTTATCCTTCAGCTGAGTCTCTGAACTCTTTAAAGTTTGAGAA
66 AAGCAACATATCTTCTTTCCCACTTATCCTTCAGCTGAG-CTCTGAACTCTTTAAAGTTTGAGAA
38593 AGTATCAGATTTTTCTTTCATAAAGAAAACCCACACATACCTGGAGAAGTCATCAATGAATGTTA
130 AGTATCAGATTTTTCTTTCATAAAGAAAACCCACACATACCTGGAGAAGTCATCAATGAATGTTA
38658 CCATGTACCGCATACGCTAATGATTGTTGCTTAACCGATCCGAACACATCAGAGTGAACCAAC
195 CCATGTACCGCATACGCTAATGATTGTTGCTTAACCGATCCGAACACATCAGAGTGAACCAAC
38721 TTCGACATTCCCTTAGGTA-TGAGAGAACTCGTTTGATCTATATTCTCATCCGTTGTCTATGCGC
1 TTCGACATTCCCTTAGGTATTGAGAGAACTCGTTTGATCTATATTCTCATCCGTTGTCTATGCGC
38785 AAGCAACATATCTTCTTT-CCACTTATCCTTCAGCTGAG-TCTGAACTCTTTAAAGTTTGAGAAA
66 AAGCAACATATCTTCTTTCCCACTTATCCTTCAGCTGAGCTCTGAACTCTTTAAAGTTTGAGAAA
38848 GTATCAGA-TTTTCTTTCAT-AAGAAAACCCACACA-ACCTGGAGAAGTCATC-ATGAATGTTAC
131 GTATCAGATTTTTCTTTCATAAAGAAAACCCACACATACCTGGAGAAGTCATCAATGAATGTTAC
38909 CATGTACCGCATAC-CGTAATGATTGTTGCTTAACCGATCCGAACACATCAGAGTGAACCAAC
196 CATGTACCGCATACGC-TAATGATTGTTGCTTAACCGATCCGAACACATCAGAGTGAACCAAC
38971 T
1 T
38972 CCAACGGTTC
Statistics
Matches: 250, Mismatches: 0, Indels: 10
0.96 0.00 0.04
Matches are distributed among these distances:
249 1 0.00
250 72 0.29
251 16 0.06
252 15 0.06
253 11 0.04
254 33 0.13
256 20 0.08
257 63 0.25
258 19 0.08
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (257 bp):
TTCGACATTCCCTTAGGTATTGAGAGAACTCGTTTGATCTATATTCTCATCCGTTGTCTATGCGC
AAGCAACATATCTTCTTTCCCACTTATCCTTCAGCTGAGCTCTGAACTCTTTAAAGTTTGAGAAA
GTATCAGATTTTTCTTTCATAAAGAAAACCCACACATACCTGGAGAAGTCATCAATGAATGTTAC
CATGTACCGCATACGCTAATGATTGTTGCTTAACCGATCCGAACACATCAGAGTGAACCAAC
Found at i:41036 original size:29 final size:29
Alignment explanation
Indices: 40994--41052 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
40984 ATTTTTACCT
40994 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
41023 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
41052 A
1 A
41053 TTAATTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:45230 original size:28 final size:28
Alignment explanation
Indices: 45186--45241 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
45176 GCGATGCATT
*
45186 AATTATATATAATTATA-TATTATTAATA
1 AATTAAATATAATTATATTATTA-TAATA
45214 AATTAAATATTAA-TATATTATTATAATA
1 AATTAAATA-TAATTATATTATTATAATA
45242 TTTTAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AATTAAATATAATTATATTATTATAATA
Found at i:45230 original size:34 final size:34
Alignment explanation
Indices: 45187--45255 Score: 81
Period size: 34 Copynumber: 2.0 Consensus size: 34
45177 CGATGCATTA
45187 ATTATATATA-ATTAT-ATATTATTAATAAATTAAAT
1 ATTATATATATATTATAATATT-TT-A-AAATTAAAT
45222 ATTA-ATATATTATTATAATATTTTAAAATTAAAT
1 ATTATATATA-TATTATAATATTTTAAAATTAAAT
45256 TAACACCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
34 14 0.45
35 5 0.16
36 7 0.23
37 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (34 bp):
ATTATATATATATTATAATATTTTAAAATTAAAT
Found at i:49091 original size:23 final size:23
Alignment explanation
Indices: 49040--49091 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
49030 TTTTTAATAA
*
49040 TTCTACTTTGGTGACACATTCTT
1 TTCTATTTTGGTGACACATTCTT
*
49063 TTCTATTTTTGTGACACATT-TT
1 TTCTATTTTGGTGACACATTCTT
49085 TCTCTAT
1 T-TCTAT
49092 CTTCATGCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.54
Consensus pattern (23 bp):
TTCTATTTTGGTGACACATTCTT
Found at i:51018 original size:17 final size:17
Alignment explanation
Indices: 50993--51027 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
50983 TGGAATCTTG
*
50993 TTCCTAAATTTTTGAAT
1 TTCCAAAATTTTTGAAT
51010 TTCCAAAATTTTTGAAT
1 TTCCAAAATTTTTGAAT
51027 T
1 T
51028 CGCTACTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (17 bp):
TTCCAAAATTTTTGAAT
Found at i:55238 original size:28 final size:29
Alignment explanation
Indices: 55207--55262 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
55197 ATTTCAAAAT
55207 TATAATTATGAAA-AAAA-ATTAATTTATA
1 TATAATTAT-AAATAAAATATTAATTTATA
* *
55235 TATATTTATAAATAAAATATTTATTTAT
1 TATAATTATAAATAAAATATTAATTTAT
55263 TTAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.12
28 12 0.50
29 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TATAATTATAAATAAAATATTAATTTATA
Found at i:55350 original size:20 final size:19
Alignment explanation
Indices: 55311--55352 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
55301 CAGCTCTGAT
55311 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
55330 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
55350 ATT
1 ATT
55353 TATAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:55537 original size:21 final size:20
Alignment explanation
Indices: 55480--55538 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
55470 TAAAAGTAAT
*
55480 TAAATAATAT-TTTAATAAA
1 TAAATAATATATTTATTAAA
*
55499 TAAAATAAATATTATTTATTATA
1 T-AAAT-AATA-TATTTATTAAA
55522 TAAATATATATATTTAT
1 TAAATA-ATATATTTAT
55539 GGCTAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 1 0.03
20 4 0.12
21 12 0.36
22 8 0.24
23 8 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAAATAATATATTTATTAAA
Found at i:55552 original size:3 final size:3
Alignment explanation
Indices: 55544--55573 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
55534 TTTATGGCTA
55544 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
55574 TAAAAGTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:56252 original size:20 final size:20
Alignment explanation
Indices: 56226--56271 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
56216 TTAGAGTTTC
*
56226 GGCCGGCAACCGTGCTCCGGT
1 GGCCGGCAACCG-CCTCCGGT
*
56247 -GCCGGCCACCGCCTCCGGT
1 GGCCGGCAACCGCCTCCGGT
56266 GGCCGG
1 GGCCGG
56272 AAAAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.07, C:0.43, G:0.39, T:0.11
Consensus pattern (20 bp):
GGCCGGCAACCGCCTCCGGT
Found at i:56448 original size:17 final size:17
Alignment explanation
Indices: 56426--56473 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
56416 CGGTGGTAAG
56426 TCTCTCGGGTTTTTTTT
1 TCTCTCGGGTTTTTTTT
* *
56443 TCTCTC-AGTTTGTATTT
1 TCTCTCGGGTTT-TTTTT
*
56460 GCTCTCGGGTTTTT
1 TCTCTCGGGTTTTT
56474 GCTTGCTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
16 4 0.17
17 16 0.67
18 4 0.17
ACGTcount: A:0.04, C:0.19, G:0.19, T:0.58
Consensus pattern (17 bp):
TCTCTCGGGTTTTTTTT
Found at i:57011 original size:3 final size:3
Alignment explanation
Indices: 56996--57061 Score: 89
Period size: 3 Copynumber: 22.3 Consensus size: 3
56986 ATATTTAATT
*
56996 TAA TAA TAT TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** *
57043 TTT TAA AAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
57062 TTAAGTAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:57344 original size:76 final size:76
Alignment explanation
Indices: 57218--58009 Score: 1386
Period size: 76 Copynumber: 10.4 Consensus size: 76
57208 AGGTCCTAAA
* * * * *
57218 AAACATCATGCGCTGAAGGGCTTACAGATAACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57283 AGGCTTTTTGG
66 AGGCTTTTTGG
*
57294 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTTCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57359 AGGCTTTTTGG
66 AGGCTTTTTGG
57370 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCCAAAAAGCTCCCG
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACAT-CAAAAAGCTCCCG
57435 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* ** * *
57447 AAACATCATGCACTGTAGGACTTACAAATGACCCTAAGATTTTAAAAACATCTAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57512 AGGCTTTTTGG
66 AGGCTTTTTGG
57523 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57588 AGGCTTTTTGG
66 AGGCTTTTTGG
* * * *
57599 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTAAAAACATCAAAAAGCTCTCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57664 AGGCTTTTTGG
66 AGGCTTTTTGG
57675 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
57740 AGGCTTTTTAG
66 AGGCTTTTTGG
* * *
57751 AAACATCATGCATTGTAGGACTTACAGATGAACCTAAGGCTTTGAAAACATCAGAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57816 AGGCTTTTTGG
66 AGGCTTTTTGG
57827 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
57892 AGGCTTTTTGG
66 AGGCTTTTTGG
57903 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCCAAAAAGCTCCCG
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACAT-CAAAAAGCTCCCG
57968 AAGGCTTTTTGG
65 AAGGCTTTTTGG
*
57980 AAACATCATGCACTGCAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
58010 TGGGAAATAG
Statistics
Matches: 680, Mismatches: 34, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
76 555 0.82
77 125 0.18
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:58698 original size:22 final size:22
Alignment explanation
Indices: 58673--58749 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
58663 AATAAAGCTT
58673 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
58695 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
58717 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
58739 TCATCTTTGAA
1 TCATCTTTGAA
58750 GAGTGTAGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:61479 original size:114 final size:114
Alignment explanation
Indices: 61279--61498 Score: 350
Period size: 114 Copynumber: 1.9 Consensus size: 114
61269 GATCATGCAG
* * * ** *
61279 TTCATCTTTCAATTCCAATGATTGGTTATGGGGTTCCTACTGAACCAGATCATATAACTCAAAGA
1 TTCATCTTTCAAATCCAATAATTGGTTATGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
61344 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
* **
61393 TTCATCTTTCAAATCCAATAATTGGTTTTGGGGTTCATACCAAATTAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATAATTGGTTATGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
61458 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
66 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTA
61499 CGAGAACGTG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 96 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATAATTGGTTATGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:63778 original size:10 final size:10
Alignment explanation
Indices: 63756--63838 Score: 64
Period size: 10 Copynumber: 8.2 Consensus size: 10
63746 TTGATTCAAA
*
63756 TTTTTTTCCT
1 TTTTTTTTCT
63766 TTTTGTTTT-T
1 TTTT-TTTTCT
63776 TTTATTTTTC-
1 TTT-TTTTTCT
* *
63786 -TTTCTTTCC
1 TTTTTTTTCT
63795 TTTTTTTTCTT
1 TTTTTTTTC-T
63806 TTTTTTTTCT
1 TTTTTTTTCT
**
63816 TTTTTCATCT
1 TTTTTTTTCT
63826 TTTTTATTTCT
1 TTTTT-TTTCT
63837 TT
1 TT
63839 GCTGGATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
8 5 0.09
9 2 0.03
10 33 0.57
11 18 0.31
ACGTcount: A:0.04, C:0.13, G:0.01, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:63796 original size:30 final size:28
Alignment explanation
Indices: 63757--63830 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
63747 TGATTCAAAT
63757 TTTTTTCCTTTTTGTTT-TTTTTATTTTTC
1 TTTTTTCCTTTTT-TTTCTTTTT-TTTTTC
63786 TTTCTTTCCTTTTTTTTCTTTTTTTTTTC
1 TTT-TTTCCTTTTTTTTCTTTTTTTTTTC
* *
63815 TTTTTTCATCTTTTTT
1 TTTTTTCCTTTTTTTT
63831 ATTTCTTTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
28 11 0.27
29 15 0.37
30 15 0.37
ACGTcount: A:0.03, C:0.14, G:0.01, T:0.82
Consensus pattern (28 bp):
TTTTTTCCTTTTTTTTCTTTTTTTTTTC
Found at i:63835 original size:21 final size:20
Alignment explanation
Indices: 63773--63838 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
63763 CCTTTTTGTT
* *
63773 TTTTTTATTTTTCTTTCTTTCC
1 TTTTTTATCTTT-TTTATTT-C
* *
63795 TTTTTTTTCTTTTTTTTTTC
1 TTTTTTATCTTTTTTATTTC
63815 TTTTTTCATCTTTTTTATTTC
1 TTTTTT-ATCTTTTTTATTTC
63836 TTT
1 TTT
63839 GCTGGATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
20 7 0.18
21 21 0.55
22 10 0.26
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTATCTTTTTTATTTC
Found at i:64165 original size:2 final size:2
Alignment explanation
Indices: 64158--64199 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
64148 ACAACAAAGG
64158 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64200 TAAAGGATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69511 original size:20 final size:19
Alignment explanation
Indices: 69472--69513 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
69462 CAGCTCTGAT
69472 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
69491 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
69511 ATT
1 ATT
69514 TATAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:69522 original size:113 final size:116
Alignment explanation
Indices: 69392--69617 Score: 291
Period size: 113 Copynumber: 2.0 Consensus size: 116
69382 AAAATTAATT
* * *
69392 TATATACATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAAT-GACTTCTAGGTGTC
1 TATATACATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGTC
*
69456 TTAAGACAG-C-TC-TGATATTAAAAAATAAATAAATAATTAAAACAATTAA
66 TTAAGACAGCCTTCTTAATATTAAAAAATAAATAAAT-ATTAAAACAATTAA
** *
69505 TATATA-ATTTATAAAATATGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGT
1 TATATACATTTAT-AAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGT
* * *
69569 TTTAAGACTGTCCTTTCTTAATATTGAAAAATAAATAAATATTAAAACA
65 CTTAAGACAG-CC-TTCTTAATATTAAAAAATAAATAAATATTAAAACA
69618 TGATTAAAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
112 6 0.06
113 40 0.42
114 18 0.19
116 1 0.01
118 11 0.11
119 20 0.21
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (116 bp):
TATATACATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGTC
TTAAGACAGCCTTCTTAATATTAAAAAATAAATAAATATTAAAACAATTAA
Found at i:70409 original size:20 final size:19
Alignment explanation
Indices: 70380--70418 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
70370 AAAGTTCCGC
*
70380 CCGACAACCGTGCTCCGGTG
1 CCGACAACCG-CCTCCGGTG
*
70400 CCGACCACCGCCTCCGGTG
1 CCGACAACCGCCTCCGGTG
70419 GCCGGAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.13, C:0.46, G:0.28, T:0.13
Consensus pattern (19 bp):
CCGACAACCGCCTCCGGTG
Found at i:70631 original size:18 final size:16
Alignment explanation
Indices: 70579--70624 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
70569 GGTGGTAAGT
*
70579 CTCTCGGGTTTTTTTT
1 CTCTCGGGTTTTTTTG
70595 CTCTC-GGTTTGTATTTG
1 CTCTCGGGTTT-T-TTTG
70612 CTCTCGGGTTTTT
1 CTCTCGGGTTTTT
70625 GCTTGCTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 7 0.27
17 9 0.35
18 5 0.19
ACGTcount: A:0.02, C:0.20, G:0.22, T:0.57
Consensus pattern (16 bp):
CTCTCGGGTTTTTTTG
Found at i:71162 original size:9 final size:9
Alignment explanation
Indices: 71144--71219 Score: 61
Period size: 9 Copynumber: 8.7 Consensus size: 9
71134 TTGTAATATT
71144 TAAT-TTAA
1 TAATATTAA
71152 TAATATTAA
1 TAATATTAA
71161 TAATA-TATA
1 TAATATTA-A
* *
71170 TTATAATAA
1 TAATATTAA
*
71179 TAATAATAA
1 TAATATTAA
*
71188 TAATTTTAA
1 TAATATTAA
*
71197 -AATAATAA
1 TAATATTAA
71205 TAAT-TTAA
1 TAATATTAA
71213 GTAATAT
1 -TAATAT
71220 GAAAAACTAG
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
8 15 0.27
9 37 0.67
10 3 0.05
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (9 bp):
TAATATTAA
Found at i:71164 original size:3 final size:3
Alignment explanation
Indices: 71149--71208 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
71139 ATATTTAATT
* * **
71149 TAA TAA TAT TAA TAA T-A TATA TTA TAA TAA TAA TAA TAA TAA TTT
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
71194 TAA -AA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
71209 TTAAGTAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:71165 original size:24 final size:24
Alignment explanation
Indices: 71149--71208 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 24
71139 ATATTTAATT
*
71149 TAATAATATTAATAATATATATTA
1 TAATAATAATAATAATATATATTA
*
71173 TAATAATAATAATAATA-ATTTTA
1 TAATAATAATAATAATATATATTA
*
71196 AAATAATAATAAT
1 TAATAATAATAAT
71209 TTAAGTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 17 0.52
24 16 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATAATAATAATAATATATATTA
Found at i:71224 original size:26 final size:26
Alignment explanation
Indices: 71149--71224 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
71139 ATATTTAATT
* **
71149 TAATAATATTAATAAT-ATAT-ATTA
1 TAATAATAATAATAATAATATGAAAA
* *
71173 TAATAATAATAATAATAATTTTAAAA
1 TAATAATAATAATAATAATATGAAAA
*
71199 TAATAATAAT-TTAAGTAATATGAAAA
1 TAATAATAATAATAA-TAATATGAAAA
71225 ACTAGTGTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
24 15 0.36
25 6 0.14
26 21 0.50
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (26 bp):
TAATAATAATAATAATAATATGAAAA
Found at i:75961 original size:206 final size:205
Alignment explanation
Indices: 75588--75997 Score: 549
Period size: 206 Copynumber: 2.0 Consensus size: 205
75578 CTGTGTGTTT
* * * *
75588 AGTATCTAAACTATTAGTTTTGGTTCATTTTAATGCCTAAATTTTCATTTTTCCAAAATTATACC
1 AGTATCTAAACTATCAATTTTGGTTCAGTTTAATACCTAAATTTTCATTTTTCCAAAATTATACC
* *
75653 TAACGTTTAGTTTTTTTATTTCAATTTAGTACCCTACCATTAAAAACTTAACGGACGGACTGACA
66 TAACATTTAG-TTTTTTATTTCAATTTAGTACCCTACCATTAAAAACTTAACAGACGGACTGACA
* * * *
75718 AAGCATAGGTCCGGTGGACGAACAACCAATTCGAATGGTGGACCATGAGAGAATGACGAGTTGAC
130 AAGCATAGCTCCGGTGGACGAACAACCAATCCGAATGGTGAACCATGAGAGAATGACGAGTCGAC
*
75783 CAACATAGTCA
195 AAACATAGTCA
* *
75794 AGTATCTGAAA-TATCAATTTTGGTTC-GTTTAGTACCTAAATTTTCATTTTTTTTTCAAAATT-
1 AGTATCT-AAACTATCAATTTTGGTTCAGTTTAATACCTAAATTTTCA---TTTTTCCAAAATTA
*
75856 TACCTAACATTTAG-TTTTTATTTCATTTTAGTACCCCTACCATTAAAAACTTAACAGACGGACT
62 TACCTAACATTTAGTTTTTTATTTCAATTTAGTA-CCCTACCATTAAAAACTTAACAGACGGACT
* * * ** * *
75920 GACAGAGCATAGCTCCGGTGGATGGATGACTAATCCGAATGGTTAACCATGAGAGAATGACGAGT
126 GACAAAGCATAGCTCCGGTGGACGAACAACCAATCCGAATGGTGAACCATGAGAGAATGACGAGT
75985 CGACAAACATAGT
191 CGACAAACATAGT
75998 ACAGTTTCAG
Statistics
Matches: 178, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
205 35 0.20
206 115 0.65
207 16 0.09
208 12 0.07
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (205 bp):
AGTATCTAAACTATCAATTTTGGTTCAGTTTAATACCTAAATTTTCATTTTTCCAAAATTATACC
TAACATTTAGTTTTTTATTTCAATTTAGTACCCTACCATTAAAAACTTAACAGACGGACTGACAA
AGCATAGCTCCGGTGGACGAACAACCAATCCGAATGGTGAACCATGAGAGAATGACGAGTCGACA
AACATAGTCA
Found at i:86033 original size:29 final size:31
Alignment explanation
Indices: 85970--86033 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 31
85960 TGAATTTATC
* * *
85970 AAATAATGTAGTGGAACAAATTATTTTCTTG
1 AAATAATGCAGTCGAACAAATTATTTTCGTG
86001 -AATAATGCAGTCG-ACAAATTA-TTTCGTG
1 AAATAATGCAGTCGAACAAATTATTTTCGTG
86029 AAATA
1 AAATA
86034 GGATAATGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 6 0.21
29 12 0.41
30 11 0.38
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (31 bp):
AAATAATGCAGTCGAACAAATTATTTTCGTG
Found at i:91506 original size:5 final size:5
Alignment explanation
Indices: 91496--91520 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
91486 GATGGAGAAG
91496 GTGAA GTGAA GTGAA GTGAA GTGAA
1 GTGAA GTGAA GTGAA GTGAA GTGAA
91521 AAGACAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
GTGAA
Found at i:92190 original size:27 final size:26
Alignment explanation
Indices: 92151--92209 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
92141 TGTTATATAT
* * *
92151 AATATATTTAATATTTTTTAATTAAAA
1 AATA-ATTTAATAATATATAATTAAAA
*
92178 AATAATTTAAATAATATATAATTATAA
1 AATAATTT-AATAATATATAATTAAAA
92205 AATAA
1 AATAA
92210 AAAATTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
AATAATTTAATAATATATAATTAAAA
Found at i:92280 original size:173 final size:170
Alignment explanation
Indices: 92010--92339 Score: 554
Period size: 173 Copynumber: 1.9 Consensus size: 170
92000 AGTTTATAAT
92010 TAATTTAAATAATATATAATTATAAAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATT
1 TAATTTAAATAATATATAATTATAAAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATT
* * **
92075 TAGGTTTAAAAATTATTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTGAGCTTAT
66 TAAGTTTAAAAATTATTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTAAGCCCAT
92140 ATGTTATATATAATATATTTAATATTTTTTAATTAAAAAA
131 ATGTTATATATAATATATTTAATATTTTTTAATTAAAAAA
*
92180 TAATTTAAATAATATATAATTATAAAATAAAAAATTT-ATATAAATTTTTTAATTAATTAATATT
1 TAATTTAAATAATATATAATTAT---A-AAAAAATTTCAGATAAATTTTTTAATTAATTAATATT
* *
92244 GATTTAAGTTTAAAAGTTTTTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTAAGC
62 GATTTAAGTTTAAAAATTATTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTAAGC
92309 CCATATGTTATATATAATATATTTAATATTT
127 CCATATGTTATATATAATATATTTAATATTT
92340 AAAATTTAAT
Statistics
Matches: 149, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
170 23 0.15
173 117 0.79
174 9 0.06
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.47
Consensus pattern (170 bp):
TAATTTAAATAATATATAATTATAAAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATT
TAAGTTTAAAAATTATTGGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTAAGCCCAT
ATGTTATATATAATATATTTAATATTTTTTAATTAAAAAA
Found at i:92450 original size:21 final size:22
Alignment explanation
Indices: 92426--92469 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
92416 TCTTAACCGT
*
92426 TAACCGACCGAATT-AATTCGG
1 TAACCGAACGAATTCAATTCGG
*
92447 TAACCGAACTAATTCAATTCGG
1 TAACCGAACGAATTCAATTCGG
92469 T
1 T
92470 CGGTTAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (22 bp):
TAACCGAACGAATTCAATTCGG
Found at i:93507 original size:29 final size:30
Alignment explanation
Indices: 93474--93532 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
93464 TACTTTATTG
**
93474 AGTCATTTTATTA-TTAAAAGTTATAAATT
1 AGTCATTCAATTATTTAAAAGTTATAAATT
* *
93503 AGTCATTCAATTATTTATATGTTATAAATT
1 AGTCATTCAATTATTTAAAAGTTATAAATT
93533 CATCTTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (30 bp):
AGTCATTCAATTATTTAAAAGTTATAAATT
Found at i:93759 original size:13 final size:14
Alignment explanation
Indices: 93741--93769 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93731 CACTGGCTAC
93741 AAAATA-TTAAATA
1 AAAATATTTAAATA
93754 AAAATATTTAAATA
1 AAAATATTTAAATA
93768 AA
1 AA
93770 GAATCGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATATTTAAATA
Found at i:95451 original size:14 final size:14
Alignment explanation
Indices: 95409--95457 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
95399 AAATCGAAAC
*
95409 TGGTTTATTCGGTT
1 TGGTTTTTTCGGTT
* *
95423 CGATTTTTTAACGGTT
1 TGGTTTTTT--CGGTT
95439 TGGTTTTTTCGGTT
1 TGGTTTTTTCGGTT
95453 TGGTT
1 TGGTT
95458 CGGTTCGATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 16 0.57
16 12 0.43
ACGTcount: A:0.08, C:0.08, G:0.27, T:0.57
Consensus pattern (14 bp):
TGGTTTTTTCGGTT
Found at i:105131 original size:25 final size:26
Alignment explanation
Indices: 105084--105133 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
105074 TATGGGTAAA
* *
105084 ATATTATAAAATTATATAATTTTTAT
1 ATATTATAAAATAAAATAATTTTTAT
*
105110 ATATTA-AAAATAAAATATTTTTTA
1 ATATTATAAAATAAAATAATTTTTA
105134 ATTTTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATATTATAAAATAAAATAATTTTTAT
Found at i:105983 original size:2 final size:2
Alignment explanation
Indices: 105978--106006 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
105968 TATTAACAAA
105978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106007 AATTGTTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:108811 original size:34 final size:35
Alignment explanation
Indices: 108768--108836 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
108758 GAGTATGTGT
108768 TGCCTTGAGTAAGAGAAATT-ATCG-TAGGAATGTC
1 TGCCTTGAGTAAGAGAAATTAAT-GATAGGAATGTC
108802 TGCCTTGAGTAAGAGAAATTAATGATAGGAATGTC
1 TGCCTTGAGTAAGAGAAATTAATGATAGGAATGTC
108837 CGGTCTCGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 21 0.64
35 12 0.36
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (35 bp):
TGCCTTGAGTAAGAGAAATTAATGATAGGAATGTC
Found at i:109951 original size:41 final size:40
Alignment explanation
Indices: 109901--109996 Score: 95
Period size: 42 Copynumber: 2.3 Consensus size: 40
109891 AAGAGTAGTT
* * *
109901 TAGTCGCGTTTTTATACAAACGCCACAATAGGTTTCA-TCAA
1 TAGTGGCGTTTTTATAAAAACGCCACAATA-GATTCATTC-A
* * *
109942 TAGTGGCGTTTGTATCTAAAAATGCCGCAATAGATTCATTCA
1 TAGTGGCGTTT-T-TATAAAAACGCCACAATAGATTCATTCA
109984 TAGTGGCGTTTTT
1 TAGTGGCGTTTTT
109997 GTATTTAACG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
40 1 0.02
41 11 0.24
42 18 0.39
43 16 0.35
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (40 bp):
TAGTGGCGTTTTTATAAAAACGCCACAATAGATTCATTCA
Found at i:113971 original size:21 final size:21
Alignment explanation
Indices: 113916--114001 Score: 93
Period size: 21 Copynumber: 4.1 Consensus size: 21
113906 ATGAAACAAG
*
113916 GGAAGTAGAGAGAGCAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
**
113937 GGAAGCAGCTAGAGCAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
* *
113958 GGAAGCAGAGAGAGAAGCAGT
1 GGAAGCAGAGAGAGCAGCAGC
* *
113979 GGCAGCACAGAGAG-AGGCAGC
1 GGAAGCAGAGAGAGCA-GCAGC
114000 GG
1 GG
114002 CAGAACAAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 1 0.02
21 53 0.98
ACGTcount: A:0.36, C:0.17, G:0.43, T:0.03
Consensus pattern (21 bp):
GGAAGCAGAGAGAGCAGCAGC
Found at i:114003 original size:21 final size:21
Alignment explanation
Indices: 113924--114016 Score: 80
Period size: 21 Copynumber: 4.4 Consensus size: 21
113914 AGGGAAGTAG
* *
113924 AGAGAGCAGCAGCGGAAGCAGC
1 AGAGAGAAGCAGCGGCAGCA-C
* * * *
113946 -TAGAGCAGCAGCGGAAGCAG
1 AGAGAGAAGCAGCGGCAGCAC
*
113966 AGAGAGAAGCAGTGGCAGCAC
1 AGAGAGAAGCAGCGGCAGCAC
* *
113987 AGAGAGAGGCAGCGGCAGAAC
1 AGAGAGAAGCAGCGGCAGCAC
*
114008 AAAGAGAAG
1 AGAGAGAAG
114017 TAATATATCA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.40, C:0.18, G:0.40, T:0.02
Consensus pattern (21 bp):
AGAGAGAAGCAGCGGCAGCAC
Found at i:114402 original size:43 final size:43
Alignment explanation
Indices: 114355--114440 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
114345 CATACATTTA
*
114355 GCGGCGTTTGT-GATAAAAACGCCACGAAATCTCAAGACATATT
1 GCGGCGTTT-TCGACAAAAACGCCACGAAATCTCAAGACATATT
* * * *
114398 GCGGCGTTTTCGACGAAAATGCCGCTAAATCTCAAGACATATT
1 GCGGCGTTTTCGACAAAAACGCCACGAAATCTCAAGACATATT
114441 CTGCGGCGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (43 bp):
GCGGCGTTTTCGACAAAAACGCCACGAAATCTCAAGACATATT
Found at i:114522 original size:43 final size:42
Alignment explanation
Indices: 114434--114556 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
114424 AAATCTCAAG
* * * * *
114434 ACATATTCTGCGGCGCTTGTAGGAAAACGTCGCTAAATATCA
1 ACATCTTCTGCGGCGTTTGTAGGAAAACGCCGCTAAAAATAA
*
114476 ACATCTTCTGCGGCGTTTGTAGGAAAAACGCCGGTAAAAATAA
1 ACATCTTCTGCGGCGTTTGTAGG-AAAACGCCGCTAAAAATAA
* * * *
114519 ACATCTACTGCGACGTTTGTGAAGAAAACACCGCTAAA
1 ACATCTTCTGCGGCGTTTGT-AGGAAAACGCCGCTAAA
114557 CATCAACGCC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 21 0.31
43 45 0.66
44 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (42 bp):
ACATCTTCTGCGGCGTTTGTAGGAAAACGCCGCTAAAAATAA
Found at i:114579 original size:43 final size:43
Alignment explanation
Indices: 114442--114666 Score: 132
Period size: 43 Copynumber: 5.3 Consensus size: 43
114432 AGACATATTC
* * ** * *
114442 TGCGGCGCTTGT-AGGAAAACGTCGCTAAATATCAACATCT-T
1 TGCGGCGTTTGTAAGCAAAACACCGCTAAACATCAACACCTAT
* * * * * * * *
114483 CTGCGGCGTTTGTAGGAAAAACGCCGGTAAAAATAAACATCTAC
1 -TGCGGCGTTTGTAAGCAAAACACCGCTAAACATCAACACCTAT
* *
114527 TGCGACGTTTGTGAAG-AAAACACCGCTAAACATCAACGCCTAT
1 TGCGGCGTTTGT-AAGCAAAACACCGCTAAACATCAACACCTAT
** * * * *
114570 TGCGGCGTTTGTCTGCCAAATACCGTTAAATATCAACACCTAT
1 TGCGGCGTTTGTAAGCAAAACACCGCTAAACATCAACACCTAT
* ** ** * * * *
114613 TGCGGCGTTTTTCTGCAAAACGTCGATAAATATCAATACCTTT
1 TGCGGCGTTTGTAAGCAAAACACCGCTAAACATCAACACCTAT
114656 TGCGGCGTTTG
1 TGCGGCGTTTG
114667 AACCTATATG
Statistics
Matches: 145, Mismatches: 34, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
42 12 0.08
43 131 0.90
44 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (43 bp):
TGCGGCGTTTGTAAGCAAAACACCGCTAAACATCAACACCTAT
Found at i:115119 original size:15 final size:15
Alignment explanation
Indices: 115099--115129 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
115089 ACAGCCTAGT
115099 CTTCTAGAACTCCTC
1 CTTCTAGAACTCCTC
*
115114 CTTCTAGAACTTCTC
1 CTTCTAGAACTCCTC
115129 C
1 C
115130 ACACCCAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.35
Consensus pattern (15 bp):
CTTCTAGAACTCCTC
Found at i:123637 original size:30 final size:30
Alignment explanation
Indices: 123561--123637 Score: 113
Period size: 29 Copynumber: 2.6 Consensus size: 30
123551 GACTCCCTAA
123561 TTTTTTTTTGGAATTTT-TAGGAATTTAGG
1 TTTTTTTTTGGAATTTTATAGGAATTTAGG
* *
123590 ATTTTTTTTGAAATTTTAT-GGAATTTAAGG
1 TTTTTTTTTGGAATTTTATAGGAATTT-AGG
123620 TTTTTTTTTGGAATTTTA
1 TTTTTTTTTGGAATTTTA
123638 ATAATTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 22 0.52
30 20 0.48
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (30 bp):
TTTTTTTTTGGAATTTTATAGGAATTTAGG
Found at i:124862 original size:65 final size:65
Alignment explanation
Indices: 124787--124911 Score: 191
Period size: 65 Copynumber: 1.9 Consensus size: 65
124777 AATGCATTTT
* *
124787 ATGCATCGATGCAGT-CAGGATT-TTATGGAAACATCGAATGCATTTTATGCATTGATGCACAAA
1 ATGCATCGATGCACTCCAGGATTGTT-T-GAAACATCGAATGCATTTTATGCATCGATGCACAAA
124850 CC
64 CC
*
124852 ATGCATCGATGCACTCCAGGCTTGTTTGAAACATCGAATGCATTTTATGCATCGATGCAC
1 ATGCATCGATGCACTCCAGGATTGTTTGAAACATCGAATGCATTTTATGCATCGATGCAC
124912 CCTTAGTGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 46 0.84
66 7 0.13
67 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (65 bp):
ATGCATCGATGCACTCCAGGATTGTTTGAAACATCGAATGCATTTTATGCATCGATGCACAAACC
Found at i:130704 original size:22 final size:22
Alignment explanation
Indices: 130679--130735 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
130669 GGAATCGATA
130679 CCCCCTTGTAGGGGAACAGATT
1 CCCCCTTGTAGGGGAACAGATT
* * *
130701 CCCCCTTTGAATGGGAACCGATT
1 CCCCC-TTGTAGGGGAACAGATT
130724 CCCCCTT-TAGGG
1 CCCCCTTGTAGGG
130736 AATCGATACC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 3 0.10
22 7 0.24
23 19 0.66
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.25
Consensus pattern (22 bp):
CCCCCTTGTAGGGGAACAGATT
Found at i:132356 original size:15 final size:15
Alignment explanation
Indices: 132338--132387 Score: 100
Period size: 15 Copynumber: 3.3 Consensus size: 15
132328 CGAGGGTATT
132338 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
132353 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
132368 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
132383 GTAGT
1 GTAGT
132388 GGTCCTATGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:138179 original size:14 final size:15
Alignment explanation
Indices: 138162--138190 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
138152 TACATGATAT
138162 GCAT-AAACATAAGA
1 GCATAAAACATAAGA
138176 GCATAAAACATAAGA
1 GCATAAAACATAAGA
138191 TATATGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
GCATAAAACATAAGA
Found at i:138484 original size:15 final size:15
Alignment explanation
Indices: 138466--138500 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
138456 CGAGGGTATT
*
138466 GTAGTCTTTCGGGAC
1 GTAGTCCTTCGGGAC
138481 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
138496 GTAGT
1 GTAGT
138501 GGTCCTACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.20, G:0.34, T:0.31
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:141725 original size:65 final size:65
Alignment explanation
Indices: 141645--141769 Score: 191
Period size: 65 Copynumber: 1.9 Consensus size: 65
141635 AATGCATTTT
*
141645 ATGCGTCGATGCACT-CAGGATT-TAATGGAAACATCGAATGCATTTTATGCATCGATGCACAAA
1 ATGCATCGATGCACTCCAGGATTGT--TGGAAACATCGAATGCATTTTATGCATCGATGCACAAA
141708 CC
64 CC
* *
141710 ATGCATCGATGCACTCCAGGCTTGTTTGAAACATCGAATGCATTTTATGCATCGATGCAC
1 ATGCATCGATGCACTCCAGGATTGTTGGAAACATCGAATGCATTTTATGCATCGATGCAC
141770 CCTTAGTGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 48 0.87
66 6 0.11
67 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (65 bp):
ATGCATCGATGCACTCCAGGATTGTTGGAAACATCGAATGCATTTTATGCATCGATGCACAAACC
Found at i:141855 original size:21 final size:21
Alignment explanation
Indices: 141829--141884 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
141819 TTTACACTTG
141829 ATGCATCGATGCACCTTAACT
1 ATGCATCGATGCACCTTAACT
141850 ATGCATCGATGCACCTTAACT
1 ATGCATCGATGCACCTTAACT
141871 ATGCATCGATGCAC
1 ATGCATCGATGCAC
141885 ACACGCTCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (21 bp):
ATGCATCGATGCACCTTAACT
Found at i:142374 original size:43 final size:43
Alignment explanation
Indices: 142320--142570 Score: 281
Period size: 43 Copynumber: 5.9 Consensus size: 43
142310 TGGTAACAAA
*** *
142320 AAACGCCGCAATAGGTAACGATATATAGCGGCGTTTTTCCAAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
* * *
142363 AAACGCTGCAATAGGTATTGATATTTAGCGGCGTTTGTCCAAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
* * *
142406 AAACACCGCAATAGGTGTTGATATTTGGCGGCATTTTTCCAAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
* * * * *
142449 AAACGTCGGAATAGGTGTTGAGATTTAGCAGC-ATTTTCCAAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
* *
142491 AAACGCCGAAATAGGTGTTGATATTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
* * * * * *
142534 AAACACCGCAAAAGAT-CTGGTATATAGCGGCGTTTTT
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTT
142571 TTAAAAAAAC
Statistics
Matches: 176, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
42 55 0.31
43 121 0.69
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (43 bp):
AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTTCCAAC
Found at i:142768 original size:21 final size:21
Alignment explanation
Indices: 142742--142800 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
142732 ATTTTCCAAT
*
142742 AAACTTGACATCCATAACAAC
1 AAACTTGAAATCCATAACAAC
* *
142763 AAACTTAAAATCCATAACAAG
1 AAACTTGAAATCCATAACAAC
**
142784 AAAAATGAAATCCATAA
1 AAACTTGAAATCCATAA
142801 TAATAAATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (21 bp):
AAACTTGAAATCCATAACAAC
Found at i:144524 original size:111 final size:111
Alignment explanation
Indices: 144330--144549 Score: 386
Period size: 111 Copynumber: 2.0 Consensus size: 111
144320 AGTTGTAAAC
144330 AAAATTAGCTAAAAATATGCATGCAAGAACAAAAAAATCTTATAAGAGAATGAGAGAGTGTACTA
1 AAAATTAGCTAAAAATATGCATGCAAGAACAAAAAAATCTTATAAGAGAATGAGAGAGTGTACTA
*
144395 GAATGCATCATGCCAGTAGCAGCAACAGATCCCACGGTATTCAGAA
66 GAAGGCATCATGCCAGTAGCAGCAACAGATCCCACGGTATTCAGAA
** * *
144441 AAAATTAGCTAAAAATATGCATGCAAGAACGGAAAAATCTTGTAAGAGCATGAGAGAGTGTACTA
1 AAAATTAGCTAAAAATATGCATGCAAGAACAAAAAAATCTTATAAGAGAATGAGAGAGTGTACTA
*
144506 GAAGGCATCATGCCAGTAGCAGCAACAGATCCCATGGTATTCAG
66 GAAGGCATCATGCCAGTAGCAGCAACAGATCCCACGGTATTCAG
144550 TAATTTCGGA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
111 103 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (111 bp):
AAAATTAGCTAAAAATATGCATGCAAGAACAAAAAAATCTTATAAGAGAATGAGAGAGTGTACTA
GAAGGCATCATGCCAGTAGCAGCAACAGATCCCACGGTATTCAGAA
Found at i:147088 original size:41 final size:41
Alignment explanation
Indices: 146950--147384 Score: 222
Period size: 42 Copynumber: 10.6 Consensus size: 41
146940 TACGGATTAA
* * * * *
146950 AAAGTACGAGTATTTAGTGGTGTTTGTGCTTAAAACGCCACT
1 AAAGTACGAGTATTTAGCGGCGTTTAT-ATAAAAACGCCACT
* * * *
146992 AAAGTACGAGTATCTGGCGGCGTTTATGCTTAAAACGCCACT
1 AAAGTACGAGTATTTAGCGGCGTTTAT-ATAAAAACGCCACT
* * * * *
147034 AAAGTAC-ATTATTTTGAGGCATTTATATAAAAACACCACT
1 AAAGTACGAGTATTTAGCGGCGTTTATATAAAAACGCCACT
* *
147074 ATAGTACGAGTATTTAGCGGCGTTTGTATAAAAAACGCCACT
1 AAAGTACGAGTATTTAGCGGCGTTTATAT-AAAAACGCCACT
* * ** * * * *
147116 AAA-TCACAAGTCTACAGTGGCGTTTGTTCTAAAAATGCCACT
1 AAAGT-ACGAGTATTTAGCGGCGTTT-ATATAAAAACGCCACT
* * * * *
147158 AAATTA-TAGTCTTTCGCGGCGTTTGTATAAAAACGCCACT
1 AAAGTACGAGTATTTAGCGGCGTTTATATAAAAACGCCACT
* * * * * *
147198 AAAGTA-AATTATTTAGCGGCGTTTCTGTAAAAATGCCGCT
1 AAAGTACGAGTATTTAGCGGCGTTTATATAAAAACGCCACT
* * * * * * * **
147238 ATAGAATGAGTCTATAGCGGCGTTTGTATAAAAAAATGCCGGT
1 AAAGTACGAGTATTTAGCGGCG-TT-TATATAAAAACGCCACT
** * * *
147281 AAAG-ACTCGTACTATAGCGGCGTTTGTACAAAAACGCCACT
1 AAAGTACGAGTA-TTTAGCGGCGTTTATATAAAAACGCCACT
* * * *
147322 AAA-T--TAGTCTTTAGCGACGTCTT-TATAAAAACGCCGCT
1 AAAGTACGAGTATTTAGCGGCGT-TTATATAAAAACGCCACT
* * *
147360 ATAGTACGAGTCTTTACCGGCGTTT
1 AAAGTACGAGTATTTAGCGGCGTTT
147385 GTTCTAGAAA
Statistics
Matches: 303, Mismatches: 76, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
38 24 0.08
39 6 0.02
40 67 0.22
41 83 0.27
42 94 0.31
43 29 0.10
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (41 bp):
AAAGTACGAGTATTTAGCGGCGTTTATATAAAAACGCCACT
Found at i:147199 original size:40 final size:39
Alignment explanation
Indices: 147023--147386 Score: 194
Period size: 41 Copynumber: 8.9 Consensus size: 39
147013 GTTTATGCTT
* * * * * * *
147023 AAAACGCCACTAAAGTACATTATTTTGAGGCATTTATATA
1 AAAACGCCACTAAA-TATAGTCTTTAGCGGCGTTTGTATA
* * * *
147063 AAAACACCACTATAGTACGAGTATTTAGCGGCGTTTGTATAA
1 AAAACGCCACTA-AATA-TAGTCTTTAGCGGCGTTTGTAT-A
* ** * *
147105 AAAACGCCACTAAATCACAAGTCTACAGTGGCGTTTGTTCTA
1 AAAACGCCACTAAAT-A-TAGTCTTTAGCGGCGTTTG-TATA
* *
147147 AAAATGCCACTAAATTATAGTCTTTCGCGGCGTTTGTATA
1 AAAACGCCACTAAA-TATAGTCTTTAGCGGCGTTTGTATA
* * * * *
147187 AAAACGCCACTAAAGTAAATTATTTAGCGGCGTTTCTGTA
1 AAAACGCCACTAAA-TATAGTCTTTAGCGGCGTTTGTATA
* * *
147227 AAAATGCCGCTATAGA-ATGAGTCTATAGCGGCGTTTGTATAAA
1 AAAACGCCACTA-A-ATAT-AGTCTTTAGCGGCGTTTGTAT--A
* ** * * * *
147270 AAAATGCCGGTAAAGACTCGTACTATAGCGGCGTTTGTACA
1 AAAACGCCACTAAATA-TAGT-CTTTAGCGGCGTTTGTATA
*
147311 AAAACGCCACTAAAT-TAGTCTTTAGCGACGTCTT-TATA
1 AAAACGCCACTAAATATAGTCTTTAGCGGCGT-TTGTATA
* * * *
147349 AAAACGCCGCTATAGTACGAGTCTTTACCGGCGTTTGT
1 AAAACGCCACTA-AATA-TAGTCTTTAGCGGCGTTTGT
147387 TCTAGAAATG
Statistics
Matches: 250, Mismatches: 55, Indels: 37
0.73 0.16 0.11
Matches are distributed among these distances:
38 24 0.10
39 7 0.03
40 61 0.24
41 77 0.31
42 48 0.19
43 33 0.13
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (39 bp):
AAAACGCCACTAAATATAGTCTTTAGCGGCGTTTGTATA
Found at i:147272 original size:122 final size:121
Alignment explanation
Indices: 147082--147387 Score: 278
Period size: 122 Copynumber: 2.5 Consensus size: 121
147072 CTATAGTACG
* * * ** * * * **
147082 AGTATTTAGCGGCGT-TTGTATAAAAAACGCCACTAAATCACAAGTCTACAGTGGCGTTTGTTCT
1 AGTATTTAGCGACGTCTT-TAT-AAAAACGCCGCTATAGAACGAGTCTATAGCGGCGTTTGTTAA
* * * *
147146 AAAAATGCCACTAAATTA-TAGT-CTTTCGCGGCGTTTGTATAAAAACGCCACTAAAGTAA
64 AAAAATGCCACTAAA-GACTAGTACTATAGCGGCGTTTGTACAAAAACGCCACTAAA-T-A
* * * * *
147205 ATTATTTAGCGGCGT-TTCTGTAAAAATGCCGCTATAGAATGAGTCTATAGCGGCGTTTGTATAA
1 AGTATTTAGCGACGTCTT-TATAAAAACGCCGCTATAGAACGAGTCTATAGCGGCGTTTGT-TAA
** * *
147269 AAAAATGCCGGTAAAGACTCGTACTATAGCGGCGTTTGTACAAAAACGCCACTAAATT
64 AAAAATGCCACTAAAGACTAGTACTATAGCGGCGTTTGTACAAAAACGCCACTAAATA
* * * *
147327 AGTCTTTAGCGACGTCTTTATAAAAACGCCGCTATAGTACGAGTCTTTACCGGCGTTTGTT
1 AGTATTTAGCGACGTCTTTATAAAAACGCCGCTATAGAACGAGTCTATAGCGGCGTTTGTT
147388 CTAGAAATGC
Statistics
Matches: 148, Mismatches: 31, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
121 1 0.01
122 79 0.53
123 38 0.26
124 30 0.20
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (121 bp):
AGTATTTAGCGACGTCTTTATAAAAACGCCGCTATAGAACGAGTCTATAGCGGCGTTTGTTAAAA
AAATGCCACTAAAGACTAGTACTATAGCGGCGTTTGTACAAAAACGCCACTAAATA
Found at i:147322 original size:164 final size:162
Alignment explanation
Indices: 147023--147365 Score: 377
Period size: 164 Copynumber: 2.1 Consensus size: 162
147013 GTTTATGCTT
* * * *
147023 AAAACGCCACTAAAGTACATTATTTTGAGGCATTTATATAAAAACACCACTATAGTACGAGTATT
1 AAAACGCCACTAAAGTAAATTATTTAGAGGCATTTATATAAAAACACCACTATAGAACGAGTATA
* * *
147088 TAGCGGCGTTTGTATAAAAAACGCCACTAAATCACAAGTCTACAGTGGCGTTTGTTCTAAAAATG
66 TAGCGGCGTTTGTATAAAAAACGCCACTAAATCACAAGTCTACAGCGGCGTTTGTACTAAAAACG
* *
147153 CCACTAAATTATAGTCTTTCGCGGCGT-TTGTATA
131 CCACTAAA-T-TAGTCTTTAGCGACGTCTT-TATA
* * * * ** * * *
147187 AAAACGCCACTAAAGTAAATTATTTAGCGGCGTTTCTGTAAAAATGCCGCTATAGAATGAGTCTA
1 AAAACGCCACTAAAGTAAATTATTTAGAGGCATTTATATAAAAACACCACTATAGAACGAGTATA
* ** * ** *
147252 TAGCGGCGTTTGTATAAAAAAATGCCGGTAAA-GACTCGTACTATAGCGGCGTTTGTAC-AAAAA
66 TAGCGGCGTTTGTAT-AAAAAACGCCACTAAATCACAAGT-CTACAGCGGCGTTTGTACTAAAAA
147315 CGCCACTAAATTAGTCTTTAGCGACGTCTTTATA
129 CGCCACTAAATTAGTCTTTAGCGACGTCTTTATA
* *
147349 AAAACGCCGCTATAGTA
1 AAAACGCCACTAAAGTA
147366 CGAGTCTTTA
Statistics
Matches: 149, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
162 33 0.22
163 3 0.02
164 85 0.57
165 28 0.19
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (162 bp):
AAAACGCCACTAAAGTAAATTATTTAGAGGCATTTATATAAAAACACCACTATAGAACGAGTATA
TAGCGGCGTTTGTATAAAAAACGCCACTAAATCACAAGTCTACAGCGGCGTTTGTACTAAAAACG
CCACTAAATTAGTCTTTAGCGACGTCTTTATA
Found at i:149284 original size:29 final size:29
Alignment explanation
Indices: 149241--149323 Score: 148
Period size: 29 Copynumber: 2.8 Consensus size: 29
149231 CTCACCTAAC
149241 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTACT
*
149271 TAAATGATGTAAGCAATGACATCTTTACT
1 TAAATGATGTAAGCAATGACATCATTACT
149300 TAAATGATGTAAGCAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
149324 ATTTAGTTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 47 0.92
30 4 0.08
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.31
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTACT
Found at i:154052 original size:29 final size:29
Alignment explanation
Indices: 154010--154086 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
154000 TAACTAAATT
*
154010 GATGTAAGCAATGATATCATTACTTAAAC
1 GATGTAAGCAATGACATCATTACTTAAAC
* *
154039 GATGTAAGCAATGACATCTTTACTTAAAT
1 GATGTAAGCAATGACATCATTACTTAAAC
154068 GATGTAAGCAATGACATCA
1 GATGTAAGCAATGACATCA
154087 ATTTAGTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (29 bp):
GATGTAAGCAATGACATCATTACTTAAAC
Found at i:160924 original size:13 final size:14
Alignment explanation
Indices: 160904--160933 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
160894 CAAATCAGCC
*
160904 AACAAAATGGTTAA
1 AACAAATTGGTTAA
160918 AACAAATTGGTTAA
1 AACAAATTGGTTAA
160932 AA
1 AA
160934 AAAGAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (14 bp):
AACAAATTGGTTAA
Found at i:161161 original size:12 final size:12
Alignment explanation
Indices: 161144--161170 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
161134 TTCACTAAAA
161144 TGATTTTCACTT
1 TGATTTTCACTT
161156 TGATTTTCACTT
1 TGATTTTCACTT
161168 TGA
1 TGA
161171 CCATTACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.56
Consensus pattern (12 bp):
TGATTTTCACTT
Found at i:162081 original size:23 final size:23
Alignment explanation
Indices: 162053--162099 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
162043 TTTTCAAATC
* * *
162053 TCAAATTTGAGTTCGAATTTTAA
1 TCAAATTTAAATTAGAATTTTAA
162076 TCAAATTTAAATTAGAATTTTAA
1 TCAAATTTAAATTAGAATTTTAA
162099 T
1 T
162100 TGATTTAGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (23 bp):
TCAAATTTAAATTAGAATTTTAA
Found at i:167051 original size:83 final size:80
Alignment explanation
Indices: 166945--167154 Score: 244
Period size: 83 Copynumber: 2.5 Consensus size: 80
166935 AAAACTATCT
* * *
166945 AAATTTAAACATATAATATTATCTTTTAAATTTAAAATATTAAACAT-AAGTTTTTTACTCTAAC
1 AAATTT-AACAGATAATA-TATCTTTTAAATTTAAAATATTAAACATAAAG--TTGTACTCAAAC
*
167009 CAAAACTCTTTTAAAATCG
62 CAAAACTCTTTTAAAATAG
*
167028 AAATTTAGACAGATAATCATATCTTTTAAATTTAAAATATTAAACCTGAAAGTTGTACTCAAACC
1 AAATTTA-ACAGATAAT-ATATCTTTTAAATTTAAAATATTAAACAT-AAAGTTGTACTCAAACC
* *
167093 AAAACTCTTTTAATATAT
63 AAAACTCTTTTAAAATAG
* *
167111 AAATTTAATCAGATAATAATATCTTATAAATTT-AAGTATTAAAC
1 AAATTTAA-CAGATAAT-ATATCTTTTAAATTTAAAATATTAAAC
167155 CTGTATTTCC
Statistics
Matches: 112, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
82 12 0.11
83 96 0.86
84 1 0.01
85 3 0.03
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (80 bp):
AAATTTAACAGATAATATATCTTTTAAATTTAAAATATTAAACATAAAGTTGTACTCAAACCAAA
ACTCTTTTAAAATAG
Found at i:173982 original size:4 final size:4
Alignment explanation
Indices: 173973--173998 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
173963 ACTGGGTAAG
173973 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
173999 TTAATCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:191593 original size:45 final size:46
Alignment explanation
Indices: 191518--191640 Score: 158
Period size: 45 Copynumber: 2.7 Consensus size: 46
191508 CAGTAAAGCT
* * * * * * * *
191518 CTACTTAAAATATTATTTGTTATATCGAAAATGTTAATATTGGGCG
1 CTACCTAAAACATTATTTTTTCTACCGAAAATGTTAATATCGGACA
191564 CTACCT-AAACATTATTTTTTCTACCGAAAATGTTAATATCGGACA
1 CTACCTAAAACATTATTTTTTCTACCGAAAATGTTAATATCGGACA
*
191609 CTACCTAAAACATTAATTTTTCTACCGAAAAT
1 CTACCTAAAACATTATTTTTTCTACCGAAAAT
191641 TAGCTAGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 38 0.57
46 29 0.43
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (46 bp):
CTACCTAAAACATTATTTTTTCTACCGAAAATGTTAATATCGGACA
Found at i:198015 original size:35 final size:37
Alignment explanation
Indices: 197944--198016 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 37
197934 GTTGAAAAAT
** * *
197944 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATAAATTCTTTAAAAAATTAAAAATCATAAA
*
197981 ATTTATATAAATT-TTTACAAAATTAAAAAT-ATAAA
1 ATTTATATAAATTCTTTAAAAAATTAAAAATCATAAA
198016 A
1 A
198017 ATGTTTAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 6 0.19
36 14 0.45
37 11 0.35
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (37 bp):
ATTTATATAAATTCTTTAAAAAATTAAAAATCATAAA
Found at i:199705 original size:20 final size:20
Alignment explanation
Indices: 199680--199732 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
199670 CGATTTTTAT
199680 TTCGCGTTGCGATAGTCAAA
1 TTCGCGTTGCGATAGTCAAA
**
199700 TTCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCAAA
*
199720 TTCGTGTTGCGAT
1 TTCGCGTTGCGAT
199733 TTTAAGTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.38
Consensus pattern (20 bp):
TTCGCGTTGCGATAGTCAAA
Found at i:201640 original size:20 final size:20
Alignment explanation
Indices: 201617--201665 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
201607 GAAACTTAAA
201617 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
201637 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
201657 ATCGCAACG
1 ATCGCAACG
201666 GGATAATCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:201710 original size:20 final size:20
Alignment explanation
Indices: 201670--201722 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
201660 GCAACGGGAT
201670 AATCGCAATGCG-AAATAAA
1 AATCGCAATGCGAAAATAAA
*
201689 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCGAAAATAAA
* *
201709 AATCACAACGCGAA
1 AATCGCAATGCGAA
201723 TTTAGTTTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.51, C:0.19, G:0.17, T:0.13
Consensus pattern (20 bp):
AATCGCAATGCGAAAATAAA
Found at i:201761 original size:19 final size:20
Alignment explanation
Indices: 201723--201761 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
201713 ACAACGCGAA
* *
201723 TTTAGTTTCGCGTTGTGATT
1 TTTAGTTTCGCATTGCGATT
201743 TTTA-TTTCGCATTGCGATT
1 TTTAGTTTCGCATTGCGATT
201762 ATCATGTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.13, C:0.13, G:0.21, T:0.54
Consensus pattern (20 bp):
TTTAGTTTCGCATTGCGATT
Found at i:201796 original size:20 final size:20
Alignment explanation
Indices: 201767--201832 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
201757 CGATTATCAT
*
201767 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCAATTTCGC
*
201787 GTTGCTATAGTC-ATTTCCGC
1 GTTGCGATAGTCAATTT-CGC
*
201807 GTTGCGATAGTCATTTTCGC
1 GTTGCGATAGTCAATTTCGC
201827 GTTGCG
1 GTTGCG
201833 GTTTTAAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.08
20 34 0.85
21 3 0.08
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (20 bp):
GTTGCGATAGTCAATTTCGC
Found at i:201844 original size:20 final size:20
Alignment explanation
Indices: 201821--201864 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
201811 CGATAGTCAT
*
201821 TTTCGCGTTGCGGTTTTAAG
1 TTTCGCGTTGCGATTTTAAG
*
201841 TTTCGTGTTGCGATTTTAAG
1 TTTCGCGTTGCGATTTTAAG
201861 TTTC
1 TTTC
201865 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.25, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTAAG
Found at i:202417 original size:21 final size:21
Alignment explanation
Indices: 202345--202422 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
202335 ACTCACCTGT
*
202345 CATCGTTCAAGAGGCCTCTCC
1 CATCGTTCAAGAGGCCCCTCC
* **
202366 TATCGTTCAAGAGGCCCCTAT
1 CATCGTTCAAGAGGCCCCTCC
** *
202387 CATCCCTCAAGAGTCCCCTCC
1 CATCGTTCAAGAGGCCCCTCC
*
202408 CATCGTTCAAAAGGC
1 CATCGTTCAAGAGGC
202423 TCATATCATC
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.23, C:0.37, G:0.17, T:0.23
Consensus pattern (21 bp):
CATCGTTCAAGAGGCCCCTCC
Found at i:202448 original size:42 final size:41
Alignment explanation
Indices: 202344--202451 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 41
202334 GACTCACCTG
* * * *
202344 TCATCGTTCAAGAGGCCTCTCCTATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGTCC-CTCCCATCGTTCAAAAGGCCCATA
** *
202386 TCATCCCTCAAGAGTCCCCTCCCATCGTTCAAAAGGCTCATA
1 TCATCGTTCAAGAGT-CCCTCCCATCGTTCAAAAGGCCCATA
*
202428 TCATCGTTGAAGATGTCCCTCCCA
1 TCATCGTTCAAGA-GTCCCTCCCA
202452 CCATTCAAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 50 0.93
43 4 0.07
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (41 bp):
TCATCGTTCAAGAGTCCCTCCCATCGTTCAAAAGGCCCATA
Found at i:203862 original size:27 final size:28
Alignment explanation
Indices: 203831--203893 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 28
203821 CATTTTTTGC
*
203831 TTGTTTAATTTATT-TGTAAAAGTTGAT
1 TTGTTTAATTGATTATGTAAAAGTTGAT
203858 TTGTTTAATTGATTGAAATGTAAAAGTTGAT
1 TTGTTTAATTGATT---ATGTAAAAGTTGAT
203889 TTGTT
1 TTGTT
203894 GATTTCAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 13 0.42
31 18 0.58
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (28 bp):
TTGTTTAATTGATTATGTAAAAGTTGAT
Found at i:203970 original size:20 final size:20
Alignment explanation
Indices: 203945--204013 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
203935 AGGTACACTT
203945 TCGCAACGCTAAACTCAAAA
1 TCGCAACGCTAAACTCAAAA
* *
203965 TCGCAATGCGT-AAGTCAAAA
1 TCGCAACGC-TAAACTCAAAA
* *
203985 TCGCAATGCGAAAGC-CAAAA
1 TCGCAACGCTAAA-CTCAAAA
*
204005 TCACAACGC
1 TCGCAACGC
204014 AAAAATCAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 39 0.98
21 1 0.03
ACGTcount: A:0.42, C:0.28, G:0.16, T:0.14
Consensus pattern (20 bp):
TCGCAACGCTAAACTCAAAA
Found at i:204088 original size:20 final size:20
Alignment explanation
Indices: 204063--204211 Score: 148
Period size: 20 Copynumber: 7.8 Consensus size: 20
204053 GATTTTCTCA
*
204063 TTGCGATAGTCAAATTCCCG
1 TTGCGATAGTCAAATTCGCG
* *
204083 TTGCGATAATCAAATTCACG
1 TTGCGATAGTCAAATTCGCG
* *
204103 TTGTGATAGTCAAATTTGCG
1 TTGCGATAGTCAAATTCGCG
* *
204123 TTGCGATAGTCATATTCGTG
1 TTGCGATAGTCAAATTCGCG
*
204143 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCG
*
204163 TTGCGAT--T----TTTGCG
1 TTGCGATAGTCAAATTCGCG
*
204177 TTGCGATAGTCAAATTCGTG
1 TTGCGATAGTCAAATTCGCG
* *
204197 TTACGATATTCAAAT
1 TTGCGATAGTCAAAT
204212 GAATGTGTAA
Statistics
Matches: 104, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
14 11 0.11
16 1 0.01
18 1 0.01
20 91 0.88
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCG
Found at i:204185 original size:34 final size:36
Alignment explanation
Indices: 204026--204205 Score: 127
Period size: 40 Copynumber: 4.9 Consensus size: 36
204016 AAATCAATTC
* * *
204026 GCGTTGCGATAGTCTAATACGCTTTGCGAT-T-TTCT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATATATT-T
* * *
204061 -CATTGCGATAGTCAAATTCCCGTTGCGATAATCAAATTC
1 GCGTTGCGATAGTCAAATTCGCGTTGCGAT-AT---ATTT
* * *
204100 ACGTTGTGATAGTCAAATTTGCGTTGCGATAGTCATATT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATA-T-AT-TT
* *
204139 CGTGTTGCGATAGTCAAATTCGCATTGCGAT-T-TTT
1 -GCGTTGCGATAGTCAAATTCGCGTTGCGATATATTT
* *
204174 GCGTTGCGATAGTCAAATTCGTGTTACGATAT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAT
204206 TCAAATGAAT
Statistics
Matches: 113, Mismatches: 21, Indels: 22
0.72 0.13 0.14
Matches are distributed among these distances:
34 50 0.44
35 3 0.03
36 2 0.02
38 3 0.03
39 2 0.02
40 53 0.47
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.37
Consensus pattern (36 bp):
GCGTTGCGATAGTCAAATTCGCGTTGCGATATATTT
Found at i:204204 original size:54 final size:54
Alignment explanation
Indices: 204021--204211 Score: 186
Period size: 54 Copynumber: 3.4 Consensus size: 54
204011 CGCAAAAATC
* * * *
204021 AATTCGCGTTGCGATAGTCTAATACGCTTTGCGATTTTCT-CATTGCGATAGTCA
1 AATTCGCGTTGCGATAGTCAAATTCGCATTGCGATTTT-TGCGTTGCGATAGTCA
* * * * *
204075 AATTCCCGTTGCGATAATCAAATTCACGTTGTGATAGTCAAATTTGCGTTGCGATAGTCA
1 AATTCGCGTTGCGATAGTCAAATTCGCATTGCGAT--T----TTTGCGTTGCGATAGTCA
* *
204135 TATTCGTGTTGCGATAGTCAAATTCGCATTGCGATTTTTGCGTTGCGATAGTCA
1 AATTCGCGTTGCGATAGTCAAATTCGCATTGCGATTTTTGCGTTGCGATAGTCA
* * *
204189 AATTCGTGTTACGATATTCAAAT
1 AATTCGCGTTGCGATAGTCAAAT
204212 GAATGTGTAA
Statistics
Matches: 112, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
54 66 0.59
56 1 0.01
58 1 0.01
59 1 0.01
60 43 0.38
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (54 bp):
AATTCGCGTTGCGATAGTCAAATTCGCATTGCGATTTTTGCGTTGCGATAGTCA
Found at i:204434 original size:140 final size:140
Alignment explanation
Indices: 204182--204464 Score: 494
Period size: 140 Copynumber: 2.0 Consensus size: 140
204172 TTGCGTTGCG
* * * *
204182 ATAGTCAAATTCGTGTTACGATATTCAAATGAATGTGTAATAAGTGATAACAATTGAACATATCA
1 ATAGTCAAATTCGCGTTACGATATTCAAATAAATGTGTAATAAGTGATAACAACTGAACAAATCA
*
204247 TAGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
204312 AATACACATA
131 AATACACATA
*
204322 ATAGTCAAATTCGCGTTGCGATATTCAAATAAATGTGTAATAAGTGATAACAACTGAACAAATCA
1 ATAGTCAAATTCGCGTTACGATATTCAAATAAATGTGTAATAAGTGATAACAACTGAACAAATCA
*
204387 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACATATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
*
204452 AATACATATA
131 AATACACATA
204462 ATA
1 ATA
204465 CAACGTTTGC
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 135 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTACGATATTCAAATAAATGTGTAATAAGTGATAACAACTGAACAAATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:204545 original size:18 final size:18
Alignment explanation
Indices: 204522--204556 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
204512 AGGTCGGTTG
204522 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
204540 TGATTGCGATTTTGATT
1 TGATTGAGATTTTGATT
204557 GCCTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.23, T:0.54
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:206839 original size:24 final size:24
Alignment explanation
Indices: 206805--206858 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
206795 CTAAAACATC
206805 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
206829 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
206853 ATCAAA
1 ATCAAA
206859 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:206872 original size:24 final size:24
Alignment explanation
Indices: 206805--206872 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
206795 CTAAAACATC
* * *
206805 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
206829 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
206853 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
206873 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:207704 original size:41 final size:40
Alignment explanation
Indices: 207657--207826 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
207647 ACTAAAACCT
207657 GTTGCGAATT-TGAAATTCAGCGTTGCGATAGTCAGAATCGA
1 GTTGCG-ATTATGAAATTC-GCGTTGCGATAGTCAGAATCGA
* *
207698 GTTGCGATTATGTATTATT-GCGCTGCGATAGTCAGAATC-A
1 GTTGCGATTATG-A-AATTCGCGTTGCGATAGTCAGAATCGA
* * * * *
207738 CGTTGTGATTATGTATTATCGCGTTGCAATAGTCAGAATCGC
1 -GTTGCGATTATGAAAT-TCGCGTTGCGATAGTCAGAATCGA
* * * * *
207780 GTTGCGATTTAT-ATATTCGCATTGCGATAGTCAAAATTGC
1 GTTGCGA-TTATGAAATTCGCGTTGCGATAGTCAGAATCGA
207820 GTTGCGA
1 GTTGCGA
207827 ATCTGTAAAC
Statistics
Matches: 104, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 32 0.31
41 63 0.61
42 5 0.05
43 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (40 bp):
GTTGCGATTATGAAATTCGCGTTGCGATAGTCAGAATCGA
Found at i:207864 original size:20 final size:19
Alignment explanation
Indices: 207841--207901 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
207831 GTAAACTGAT
*
207841 TTGCGATACTGGAGATCGCG
1 TTGCGAT-CTGGAGATCGCA
* *
207861 TTGCGATTTGGAGATTGCA
1 TTGCGATCTGGAGATCGCA
* *
207880 TTGCGATTTAGAGATCGCA
1 TTGCGATCTGGAGATCGCA
207899 TTG
1 TTG
207902 TGATTTTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 29 0.81
20 7 0.19
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (19 bp):
TTGCGATCTGGAGATCGCA
Found at i:207874 original size:19 final size:19
Alignment explanation
Indices: 207850--207907 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 19
207840 TTTGCGATAC
*
207850 TGGAGATCGCGTTGCGATT
1 TGGAGATCGCATTGCGATT
*
207869 TGGAGATTGCATTGCGATT
1 TGGAGATCGCATTGCGATT
* *
207888 TAGAGATCGCATTGTGATT
1 TGGAGATCGCATTGCGATT
207907 T
1 T
207908 TGTTGGTCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (19 bp):
TGGAGATCGCATTGCGATT
Found at i:212650 original size:143 final size:142
Alignment explanation
Indices: 212459--212717 Score: 364
Period size: 143 Copynumber: 1.8 Consensus size: 142
212449 AAGAAAATCT
* *
212459 ATTAATTTATATATATTTATAAATAAAATATATATTTATTTAAAAATATCAGAAAATGACTTCTA
1 ATTAATATATATATATTTATAAATAAAATATATATTTATTTAAAAATATCAGAAAAGGACTTCTA
* * *
212524 GGTGCCTTAAGACA-TATCTTTTCTTAA-A-AATAAATAAATATTAAAATAACATCTTTCTAAAA
66 GGTGCCTTAAGACAGT-CCATTTCTTAATATAAAAAATAAATATTAAAATAACATCTTTCTAAAA
212586 TAAATTAAAATAA
130 TAAATTAAAATAA
* *
212599 ATTAATATATATATAATTTATAAA-AATATGATATTTATTTATTTAAGAATATCAGAAAAGGACT
1 ATTAATATATATAT-ATTTATAAATAA-A--ATATATATTTATTTAAAAATATCAGAAAAGGACT
*
212663 TCTAGGTGCTTTAAGACAGTCCATTTCTTAATATTAAAAAATAAATATTAAAATA
62 TCTAGGTGCCTTAAGACAGTCCATTTCTTAATA-TAAAAAATAAATATTAAAATA
212718 TGATTATTTT
Statistics
Matches: 103, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
140 15 0.15
141 10 0.10
143 57 0.55
144 2 0.02
146 19 0.18
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (142 bp):
ATTAATATATATATATTTATAAATAAAATATATATTTATTTAAAAATATCAGAAAAGGACTTCTA
GGTGCCTTAAGACAGTCCATTTCTTAATATAAAAAATAAATATTAAAATAACATCTTTCTAAAAT
AAATTAAAATAA
Found at i:212817 original size:41 final size:40
Alignment explanation
Indices: 212772--212894 Score: 106
Period size: 41 Copynumber: 2.9 Consensus size: 40
212762 AATAGGATTT
212772 TTATTTAATATATATAAAATATAAAAATAAGTAAATAAATA
1 TTATTTAATATATATAAAATATAAAAATAA-TAAATAAATA
* * * *
212813 TTATTTATTATATATATTTATATGATACATAATAAT-AATCAATA
1 TTATTTA--ATATATA-TAAAAT-ATA-AAAATAATAAATAAATA
* *
212857 ATAATTAA-ATATATAAACATATAAAAATAAATAAATAA
1 TTATTTAATATATATAAA-ATATAAAAAT-AATAAATAA
212895 CGACTAAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
39 4 0.06
40 8 0.12
41 18 0.28
42 1 0.02
43 7 0.11
44 16 0.25
45 4 0.06
46 6 0.09
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (40 bp):
TTATTTAATATATATAAAATATAAAAATAATAAATAAATA
Found at i:214297 original size:39 final size:38
Alignment explanation
Indices: 214254--214391 Score: 188
Period size: 39 Copynumber: 3.6 Consensus size: 38
214244 CGAACAAGTA
214254 CTTCTCATTATGAACTTCTTCTTCCTCTCAAGATGAGTT
1 CTTCTCATTATGAACTTCTTCTTCCTCTC-AGATGAGTT
* * *
214293 CTTCTCATTATGAACTTATTCTTCTTCTTTAGATGAGTT
1 CTTCTCATTATGAACTTCTTCTTCCTC-TCAGATGAGTT
*
214332 CTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTT
1 CTTCTCATTATGAACTTCTTCTTCC-TC-TCAGATGAGTT
*
214372 TTTCTCATTATGAAC-TCTTC
1 CTTCTCATTATGAACTTCTTC
214392 CACTGGGGAT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 61 0.69
40 27 0.31
ACGTcount: A:0.20, C:0.22, G:0.09, T:0.49
Consensus pattern (38 bp):
CTTCTCATTATGAACTTCTTCTTCCTCTCAGATGAGTT
Found at i:214355 original size:20 final size:20
Alignment explanation
Indices: 214291--214355 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
214281 TCAAGATGAG
*
214291 TTCTTCTCATTATGAACTTA
1 TTCTTCTCATTATGAATTTA
* *
214311 TTCTTCTTCTTTA-G-A-TGA
1 TTCTTC-TCATTATGAATTTA
*
214329 GTTCTTCTCATTATGAATTTC
1 -TTCTTCTCATTATGAATTTA
214350 TTCTTC
1 TTCTTC
214356 CTTCTTCAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 14 0.40
21 6 0.17
ACGTcount: A:0.18, C:0.20, G:0.08, T:0.54
Consensus pattern (20 bp):
TTCTTCTCATTATGAATTTA
Found at i:214804 original size:124 final size:123
Alignment explanation
Indices: 214572--214854 Score: 424
Period size: 124 Copynumber: 2.3 Consensus size: 123
214562 AAATTAAGGC
** * *
214572 AAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC-TCCTTCTTCTGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
** *
214636 TGAACACTTCTGGAAATGTTGATGTTGATCTATCTCCTTCTGTGATAAAGTCAAACAA
66 TGAACACTTCTGGAAAAATTGATGCTGATCTATCTCCTTCTGTGATAAAGTCAAACAA
214694 AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
** * **
214759 TGAACTTTCTCTGGAAAAATTGATGCTGATCTATCTCCTTCTGTGATAGAGTCATGCAA
66 TGAACACT-TCTGGAAAAATTGATGCTGATCTATCTCCTTCTGTGATAAAGTCAAACAA
* *
214818 AAGATTGAACAAGCTCTTCTCATTATGAACTTTTTCT
1 AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCT
214855 AAAAATGTTG
Statistics
Matches: 145, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
122 33 0.23
123 33 0.23
124 79 0.54
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.40
Consensus pattern (123 bp):
AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
TGAACACTTCTGGAAAAATTGATGCTGATCTATCTCCTTCTGTGATAAAGTCAAACAA
Found at i:215030 original size:113 final size:113
Alignment explanation
Indices: 214858--215441 Score: 712
Period size: 113 Copynumber: 5.1 Consensus size: 113
214848 TTTTTCTAAA
* * *
214858 AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
1 AATGCTGATCCATCGAATGATGAATTCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
*
214923 CTTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGT
66 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGT
* * * *
214971 AATGTTGATCCATCGAATGATGAATTTGAGCAAAAAGTTGAATAAATTCTTCTCATTATGAACTT
1 AATGCTGATCCATCGAATGATGAATTCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
* * *
215036 ATTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGC
66 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGT
* *
215084 AATGCTGATCCATCGAATGATGAATTCGAGCAAAAAGTTGAACAATTTCTTCTCATTATGAACTT
1 AATGCTGATCCATCGAATGATGAATTCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
* *
215149 ATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCCT-TCTGGAAAT
66 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-CTACCTGG---T
* *** * **
215200 ATTGATGCTGATCTATCTCTTTCTGCGAT-AGAGTCGAGCAAAAGGTTGAACAAGCTCTTCTCAT
1 A---ATGCTGATCCA--TC-GAAT--GATGA-ATTCGAGCAAAAGGTTGAACAAATTCTTCTCAT
* * *
215264 TATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTCATTATGAACT-TTCTCTGGA
57 TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAC-CTGGT
* * * *
215320 AATGTTGGTCCATC-AAGTGATGGATTTGAGCAAAAGGTTGAAC-AATCTCTTCTCATTATGAAC
1 AATGCTGATCCATCGAA-TGATGAATTCGAGCAAAAGGTTGAACAAAT-TCTTCTCATTATGAAC
*
215383 TTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTCTACCTGGT
64 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGT
215433 AATGCTGAT
1 AATGCTGAT
215442 GACCCGAAGA
Statistics
Matches: 409, Mismatches: 42, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
111 1 0.00
112 45 0.11
113 250 0.61
114 5 0.01
115 2 0.00
116 1 0.00
117 8 0.02
119 10 0.02
120 1 0.00
121 3 0.01
122 1 0.00
123 36 0.09
124 46 0.11
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (113 bp):
AATGCTGATCCATCGAATGATGAATTCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGT
Found at i:215373 original size:236 final size:226
Alignment explanation
Indices: 214832--215441 Score: 757
Period size: 236 Copynumber: 2.7 Consensus size: 226
214822 TTGAACAAGC
* ** *
214832 TCTTCTCATTATGAACTTTTTCTAAAAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTT
1 TCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTCGAGCAAAAGGTT
*
214897 GAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
66 GAACAA-TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * * * *
214962 -CTACCTGGTAATGTTGATCCATCGAATGATGAATTTGAGCAAAAAGTTGAATAAATTCTTCTCA
130 CCTACCTGGTAATGCTGATCCATCGAATGATGAAGTCGAGCAAAAAGTTGAACAAACTCTTCTCA
* *
215026 TTATGAACTTATTTTTCCTTCTTCAGATGAGT
195 TTATGAACTTATTCTTCCTTCTTCAGATAAGT
* * * *
215058 TCTTCTCATTATGAACTCTAC-CTGGCAATGCTGATCCATCGAA-TGATGAATTCGAGCAAAAAG
1 TCTTCTCATTATGAACT-TTCTCTGGAAATGTTGATCCATC-AAGTGATGAATTCGAGCAAAAGG
*
215121 TTGAACAATTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
64 TTGAACAA-TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *** *
215186 CTCCT-TCTGGAAATATTGATGCTGATCTATCTCTTTCTGCGAT-AGAGTCGAGCAAAAGGTTGA
128 CTCCTACCTGG---TA---ATGCTGATCCA--TC-GAAT--GATGA-AGTCGAGCAAAAAGTTGA
* *
215249 ACAAGCTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGT
181 ACAAACTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATAAGT
* * *
215294 TCTTCTCATTATGAACTTTCTCTGGAAATGTTGGTCCATCAAGTGATGGATTTGAGCAAAAGGTT
1 TCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTCGAGCAAAAGGTT
*
215359 GAACAATCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACT
66 GAACAAT-TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
215424 -CTACCTGGTAATGCTGAT
130 CCTACCTGGTAATGCTGAT
215442 GACCCGAAGA
Statistics
Matches: 329, Mismatches: 36, Indels: 34
0.82 0.09 0.09
Matches are distributed among these distances:
226 119 0.36
227 4 0.01
229 2 0.01
230 8 0.02
232 9 0.03
233 2 0.01
234 2 0.01
235 8 0.02
236 132 0.40
237 43 0.13
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (226 bp):
TCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTCGAGCAAAAGGTT
GAACAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
CTACCTGGTAATGCTGATCCATCGAATGATGAAGTCGAGCAAAAAGTTGAACAAACTCTTCTCAT
TATGAACTTATTCTTCCTTCTTCAGATAAGT
Found at i:215403 original size:24 final size:23
Alignment explanation
Indices: 215368--215412 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
215358 TGAACAATCT
215368 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
215392 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
215413 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:215565 original size:76 final size:76
Alignment explanation
Indices: 215439--215664 Score: 380
Period size: 76 Copynumber: 3.0 Consensus size: 76
215429 TGGTAATGCT
* ** * *
215439 GATGACCCGAAGATTTTGAAAACATCAAAAAGCCCCCGAAGGCTTTTTGGAAATATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
215504 TAGGACTTACA
66 TAGGACTTACA
* *
215515 GATGACCCTAAGGCTTTGAAAACATTAAAAAGCTCCCGAAAGCTTTTTGGAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
215580 TAGGACTTACA
66 TAGGACTTACA
215591 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
*
215656 CAGGACTTA
66 TAGGACTTA
215665 TAAATATGGG
Statistics
Matches: 140, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 140 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (76 bp):
GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
TAGGACTTACA
Found at i:215956 original size:164 final size:165
Alignment explanation
Indices: 215673--215998 Score: 537
Period size: 164 Copynumber: 2.0 Consensus size: 165
215663 TATAAATATG
* * * *
215673 GGAAATAGTTTACTAAGTAAGAAACTATGGAAATCGTTTTCTTACTATTCAACAATTTCATTTTC
1 GGAAATAGTTTACTAAATAAAAAACTAAGAAAATCGTTTTCTTACTATTCAACAATTTCATTTTC
** *
215738 AGAAAAGATTGAATGAGAAACTATGAAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTAAT
66 AGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTGTTCAAAATAACATGTTAAT
*
215803 TGGGTAACATGCCCCAATCTCAAGATAATGCTGTT
131 TGGGTAACATGACCCAATCTCAAGATAATGCTGTT
*
215838 GGAAATAGTTTACTAAATAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
1 GGAAATAGTTTACTAAATAAAAAACTAAGAAAATCGTTTTCTTACTATTCAACAATTTCATTTTC
* * *
215903 -GAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTGTTCAAAATATCATGTTGAT
66 AGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTGTTCAAAATAACATGTTAAT
215967 TGGGTAACATGACCCAATCTCAAGATAATGCT
131 TGGGTAACATGACCCAATCTCAAGATAATGCT
215999 CATTCTTGTG
Statistics
Matches: 149, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
164 89 0.60
165 60 0.40
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (165 bp):
GGAAATAGTTTACTAAATAAAAAACTAAGAAAATCGTTTTCTTACTATTCAACAATTTCATTTTC
AGAAAAGATAAAATGAGAAACTATGAAAATCGTTTTCTCATTATTGTTCAAAATAACATGTTAAT
TGGGTAACATGACCCAATCTCAAGATAATGCTGTT
Found at i:216531 original size:22 final size:22
Alignment explanation
Indices: 216506--216560 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
216496 AATAAAGCTT
*
216506 TCATCTTTGAAAAGAAAATTTA
1 TCATCTTTGAAAAGAAAATCTA
* *
216528 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAAAATCTA
216550 TCATCTTTGAA
1 TCATCTTTGAA
216561 TAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAAAATCTA
Found at i:218430 original size:22 final size:22
Alignment explanation
Indices: 218399--218470 Score: 110
Period size: 22 Copynumber: 3.3 Consensus size: 22
218389 CTGAGTGGCA
218399 TATGAAATTTGTCCCGAAGGACC
1 TATG-AATTTGTCCCGAAGGACC
*
218422 TGTGAATTTGTCCCGAAGGACC
1 TATGAATTTGTCCCGAAGGACC
*
218444 TATG-AGTTGTCCCGAAGGACC
1 TATGAATTTGTCCCGAAGGACC
218465 TATGAA
1 TATGAA
218471 ACCCTCGACT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 20 0.44
22 22 0.49
23 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (22 bp):
TATGAATTTGTCCCGAAGGACC
Found at i:218455 original size:21 final size:21
Alignment explanation
Indices: 218407--218469 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
218397 CATATGAAAT
* *
218407 TTGTCCCGAAGGACCTGTGAAT
1 TTGTCCCGAAGGACCTATG-AG
218429 TTGTCCCGAAGGACCTATGAG
1 TTGTCCCGAAGGACCTATGAG
218450 TTGTCCCGAAGGACCTATGA
1 TTGTCCCGAAGGACCTATGA
218470 AACCCTCGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 21 0.54
22 18 0.46
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (21 bp):
TTGTCCCGAAGGACCTATGAG
Found at i:219944 original size:64 final size:66
Alignment explanation
Indices: 219845--219969 Score: 191
Period size: 64 Copynumber: 1.9 Consensus size: 66
219835 TAATGAAGGT
* * *
219845 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTTAATGGG
1 ATGCATCGATACACTACACCATGCATCGATGCATAAATCATATTCGATGTTTTCTATTTAATGGG
219909 G
66 G
**
219910 ATGCATCGATACACTAC-TTATGCATCGATGCATAAATCATATTCGATGTTTTCTATTTAA
1 ATGCATCGATACACTACACCATGCATCGATGCATAAATCATATTCGATGTTTTCTATTTAA
219970 ATTCATGCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 28 0.52
65 26 0.48
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (66 bp):
ATGCATCGATACACTACACCATGCATCGATGCATAAATCATATTCGATGTTTTCTATTTAATGGG
G
Found at i:219978 original size:64 final size:63
Alignment explanation
Indices: 219845--220005 Score: 189
Period size: 64 Copynumber: 2.5 Consensus size: 63
219835 TAATGAAGGT
* * * *
219845 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACTACA-TATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAAT-GGC
* * *
219910 ATGCATCGATACACTACTTATGCATCGATGCATAAATCATATTCGATGTTTTCTATTTAAAT-TC
1 ATGCATCGATGCACTACATATGCATCGATGCATAAATCATATTCGATG-TTTCTATTT-AATGGC
* * *
219974 ATGCATTGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACTACATATGCATCGATGCA
220006 CCTTAAACAA
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 55 0.67
65 24 0.29
66 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTACATATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAATGGC
Done.