genome.fa.s8079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008079.1 Hibiscus syriacus cultivar Beakdansim tig00110581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86585

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--154	74	1.9	75	88	4	218	29	18	18	33	1.95
129--358	88	2.6	90	88	5	333	23	22	20	33	1.97
129--368	45	5.4	45	86	3	315	23	22	20	32	1.98
376--466	43	2.1	44	91	4	150	28	21	19	29	1.98
635--677	3	14.0	3	81	13	52	39	0	0	60	0.97
635--678	12	3.6	12	82	17	63	40	0	0	59	0.98
645--677	7	4.7	7	92	7	50	39	0	0	60	0.97
636--682	25	1.9	24	86	4	67	44	0	0	55	0.99
2567--2670	2	53.5	2	90	5	169	49	1	0	49	1.12
10389--10428	21	1.9	21	89	0	62	10	25	40	25	1.86
10409--10471	20	2.9	21	79	9	65	15	25	34	23	1.95
14274--14313	21	1.9	21	85	10	55	35	10	2	52	1.48
16293--16348	22	2.5	23	97	2	105	14	25	42	17	1.87
20806--20838	14	2.3	15	89	5	50	78	3	15	3	0.99
25414--25453	21	1.9	21	84	0	53	37	15	17	30	1.90
26286--26332	24	2.0	24	87	8	69	55	0	2	42	1.12
26423--26456	16	2.2	16	89	5	52	67	0	2	29	1.05
28882--28913	14	2.3	14	94	0	55	68	0	0	31	0.90
28884--28925	18	2.3	18	87	4	57	71	0	0	28	0.86
28896--28932	18	2.1	18	95	5	67	70	0	0	29	0.88
29111--29157	24	2.0	24	91	0	76	29	4	65	0	1.11
47513--47565	27	2.0	27	88	0	79	39	7	3	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49586--49641	19	3.2	19	61	23	50	32	26	17	23	1.97
49568--49647	33	2.4	33	100	0	160	32	27	18	21	1.97
62050--62141	45	2.1	44	91	6	150	35	9	27	27	1.88
63886--63930	18	2.5	18	89	7	65	28	2	4	64	1.25
73095--73143	18	2.5	20	77	19	57	24	6	4	65	1.33
73100--73144	18	2.5	18	89	7	65	26	6	4	62	1.39
74653--74699	20	2.3	20	89	7	69	57	8	17	17	1.63
74660--74718	23	2.8	21	80	17	68	52	8	18	20	1.71
75215--75246	13	2.5	13	95	5	57	65	0	0	34	0.93
79536--79567	15	2.1	15	100	0	64	31	15	25	28	1.96
80161--80555	43	9.3	43	82	5	340	24	20	20	35	1.96
80166--80555	85	4.6	84	80	6	374	24	20	20	34	1.96
80267--80555	126	2.3	126	82	6	341	24	21	20	33	1.97
85219--85267	24	2.0	24	100	0	98	24	10	28	36	1.88

Tables:   1

The End!