genome.fa.s808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000808.1 Hibiscus syriacus cultivar Beakdansim tig00001568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110789

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7171--7216	16	2.9	16	93	3	76	15	10	10	63	1.53
7340--7378	20	1.9	21	89	5	62	23	2	5	69	1.21
8995--9033	19	2.1	19	100	0	78	41	5	20	33	1.74
15417--15446	14	2.1	14	93	0	51	13	23	0	63	1.29
18986--19022	20	1.9	20	94	5	67	81	0	8	10	0.89
20329--20397	22	3.4	22	65	19	67	50	15	20	13	1.77
20315--20416	39	2.6	39	93	1	179	48	13	19	18	1.81
20329--20391	20	3.2	20	66	20	60	49	17	19	14	1.80
20576--20632	3	18.3	3	92	7	96	31	0	0	68	0.90
21760--21790	16	1.9	16	93	0	53	16	9	12	61	1.56
23640--23735	17	5.5	17	73	14	72	80	0	12	7	0.91
24995--25724	134	5.4	134	84	1	856	32	21	15	30	1.94
24995--25724	269	2.7	266	85	4	912	32	21	15	30	1.94
25882--25939	3	18.7	3	77	19	57	29	3	0	67	1.07
25882--25939	13	4.6	13	80	19	70	29	3	0	67	1.07
27553--27579	14	1.9	14	100	0	54	37	3	0	59	1.15
27551--27593	12	3.5	11	84	15	50	39	2	2	55	1.25
28254--28578	165	1.9	165	91	5	535	35	12	8	43	1.74
30487--30646	42	3.8	42	87	9	229	50	0	0	50	1.00
30487--30650	46	3.7	45	88	9	221	50	0	0	50	1.00
30517--30634	23	5.2	25	64	25	82	50	0	0	49	1.00
31461--31494	17	1.9	18	88	5	52	67	2	0	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31731--31757	2	13.5	2	100	0	54	48	0	0	51	1.00
32788--32833	3	15.3	3	100	0	92	34	0	0	65	0.93
32979--33023	21	2.1	21	95	0	81	26	31	22	20	1.98
33040--33231	21	9.4	21	78	6	189	19	19	26	34	1.95
33046--33260	40	5.3	40	89	3	313	20	18	25	36	1.94
33039--33260	82	2.7	82	88	2	322	20	18	25	36	1.95
36056--36120	30	2.2	30	85	0	94	35	15	9	40	1.79
36056--36138	30	2.7	30	80	9	89	33	14	12	39	1.83
37215--37280	24	2.8	24	97	2	125	28	10	21	39	1.86
43841--43955	42	2.8	41	88	4	158	20	16	17	46	1.85
44289--44333	23	2.0	23	86	0	63	53	2	2	42	1.25
44649--44694	15	3.1	15	81	6	67	30	19	8	41	1.82
44924--45217	43	6.9	43	87	5	400	31	18	25	24	1.98
44924--45217	84	3.4	85	87	5	405	31	18	25	24	1.98
44924--45219	127	2.3	128	86	4	427	31	18	25	23	1.98
48211--48383	42	4.2	42	80	9	203	27	17	19	34	1.95
48273--48469	41	4.8	42	77	14	178	26	22	18	31	1.97
48259--48412	82	1.9	83	90	5	251	24	20	19	35	1.95
55401--55455	2	28.0	2	96	3	103	49	0	0	50	1.00
58167--58200	17	2.0	17	94	0	59	20	58	14	5	1.57
61236--61267	3	10.7	3	100	0	64	65	0	0	34	0.93
61242--61291	9	4.9	11	85	4	54	60	0	10	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61327--61390	32	2.0	32	96	0	119	40	6	14	39	1.71
62485--62532	14	3.7	14	73	21	59	25	12	6	56	1.59
62791--62841	27	1.9	26	88	4	75	9	9	19	60	1.55
62822--62851	10	3.0	10	95	0	51	6	10	23	60	1.52
62841--63007	89	1.9	88	98	1	325	44	13	11	31	1.79
63006--63038	16	2.1	16	94	0	57	6	15	24	54	1.63
63367--63409	16	2.7	16	77	0	50	11	9	27	51	1.69
64183--64226	2	22.0	2	100	0	88	50	0	0	50	1.00
70877--70909	13	2.5	13	95	0	57	69	0	0	30	0.88
76943--77003	24	2.5	24	86	5	88	18	34	19	27	1.95
78912--79030	33	3.6	33	91	2	177	24	44	2	28	1.67
79011--79043	6	5.5	6	96	0	57	30	51	0	18	1.46
82569--82593	13	1.9	13	100	0	50	24	16	16	44	1.86
87263--87298	16	2.1	18	90	10	58	61	2	5	30	1.33
88332--88418	43	2.0	43	95	0	156	41	11	18	28	1.85
90754--90787	16	2.1	17	94	5	61	38	0	0	61	0.96
92095--92151	21	2.5	23	83	8	73	28	15	28	28	1.96
92777--92807	2	15.5	2	100	0	62	51	0	0	48	1.00
93086--93148	23	2.7	23	76	9	74	31	23	25	19	1.98
93378--93436	30	2.0	29	83	3	73	33	22	6	37	1.80
97879--97917	2	19.5	2	100	0	78	51	0	0	48	1.00
103336--103457	32	3.8	32	74	14	99	36	11	17	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105315--105347	12	2.8	12	100	0	66	51	15	15	18	1.77
105690--105791	2	51.5	2	83	9	102	45	0	6	48	1.29
106771--106801	16	1.9	16	93	0	53	32	9	29	29	1.89
109988--110053	19	3.6	19	76	8	57	80	9	3	7	1.00
110124--110148	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!