genome.fa.s8080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008080.1 Hibiscus syriacus cultivar Beakdansim tig00110582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57033

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3739--3829	44	2.1	44	93	4	157	36	9	27	26	1.88
5526--5570	18	2.5	18	89	7	65	28	2	4	64	1.25
14708--14756	18	2.5	20	77	19	57	24	6	4	65	1.33
14713--14757	18	2.5	18	89	7	65	26	6	4	62	1.39
16269--16315	20	2.3	20	89	7	69	57	8	17	17	1.63
16276--16334	23	2.8	21	80	17	68	52	8	18	20	1.71
16826--16857	13	2.5	13	95	5	57	65	0	0	34	0.93
16947--17023	39	1.9	41	86	5	113	48	3	9	38	1.53
21154--21185	15	2.1	15	100	0	64	31	15	25	28	1.96
21779--22174	43	9.3	43	82	5	349	23	19	20	35	1.96
21779--22174	85	4.7	84	81	4	382	23	19	20	35	1.96
21784--22174	212	1.8	213	82	6	497	24	20	20	35	1.96
28349--28404	12	4.8	12	78	8	53	3	1	17	76	1.01
36147--36187	18	2.3	18	86	0	55	36	29	17	17	1.92
37162--37212	20	2.5	20	96	0	93	23	23	23	29	1.99
39613--40134	144	3.6	145	84	3	586	40	14	11	34	1.82
45625--45676	23	2.3	23	89	0	77	38	7	19	34	1.80
45598--45827	87	2.6	87	90	0	370	44	9	13	33	1.75
45739--45878	64	2.2	64	92	0	235	42	10	12	34	1.77
45896--46359	198	2.3	198	85	2	612	30	15	14	40	1.87
46455--46544	33	2.6	35	76	20	98	51	0	0	48	1.00
46460--46547	31	2.9	29	76	18	83	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46769--46804	17	2.1	17	100	0	72	22	5	5	66	1.34
47227--47316	33	2.6	35	76	20	98	51	0	0	48	1.00
47232--47319	31	2.9	29	76	18	83	48	0	0	51	1.00
47542--47574	17	1.9	17	100	0	66	24	6	6	63	1.40
47650--47698	24	2.0	24	96	0	89	14	8	14	63	1.52
48510--48550	21	2.0	21	85	0	55	41	17	0	41	1.49
48811--48919	29	3.8	28	70	14	78	45	0	1	51	1.18
48819--48859	15	2.9	15	78	7	50	41	0	0	58	0.98
47371--51925	786	5.8	782	87	7	6141	37	9	9	44	1.68
49238--49286	24	2.0	24	96	0	89	16	6	12	65	1.45
49595--49676	42	2.0	42	80	9	96	52	1	1	45	1.16
49636--49712	30	2.5	30	77	12	75	50	2	1	45	1.23
50399--50481	31	2.7	29	76	20	87	46	1	1	50	1.16
49262--51930	757	3.5	781	88	6	3851	37	9	9	43	1.70
51271--51338	24	2.9	24	79	20	81	44	0	2	52	1.16

Tables:   1

The End!