genome.fa.s8081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008081.1 Hibiscus syriacus cultivar Beakdansim tig00110583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45409

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922--983	33	1.9	33	96	3	117	19	14	29	37	1.91
10398--10485	21	4.4	19	74	20	72	52	2	0	45	1.13
10393--10479	31	2.8	31	81	10	106	54	2	0	43	1.13
11116--11187	21	3.4	21	88	0	99	29	16	25	29	1.97
11130--11270	42	3.4	42	79	5	151	30	21	21	26	1.98
11127--11270	21	6.9	21	81	6	132	29	20	21	27	1.98
11114--11270	83	1.9	83	82	0	197	29	21	21	27	1.98
11112--11295	83	2.2	84	79	6	196	29	20	20	29	1.98
11158--11311	83	1.9	83	81	8	188	30	23	20	25	1.98
11280--11324	21	2.1	21	100	0	90	31	24	20	24	1.98
11409--11451	6	7.5	6	97	2	72	30	53	16	0	1.43
11937--11994	6	10.3	6	96	1	79	0	17	56	25	1.40
13906--13953	23	2.1	23	84	0	60	35	10	18	35	1.85
14370--14442	23	3.2	23	80	7	85	39	20	4	35	1.72
14862--14947	39	2.2	39	93	0	145	18	13	18	48	1.80
15203--15239	18	2.1	18	89	0	56	51	10	5	32	1.60
15673--15735	23	2.7	23	92	0	99	38	20	4	36	1.74
16081--16146	25	2.6	25	80	0	87	42	13	9	34	1.76
18617--19108	183	2.7	183	95	0	878	33	17	14	34	1.90
20607--20687	3	27.0	3	75	0	72	23	34	6	35	1.80
20611--20699	12	7.4	12	84	0	88	21	34	7	35	1.82
20611--20702	18	5.1	18	77	0	76	20	34	7	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20623--20699	36	2.1	36	90	0	118	20	35	9	35	1.85
20611--20702	6	15.3	6	79	0	67	20	34	7	36	1.81
22149--23313	199	5.9	198	96	1	2115	31	16	15	36	1.90
22149--23313	393	2.9	393	96	1	2107	31	16	15	36	1.90
23431--23479	19	2.6	19	90	0	71	55	10	2	32	1.45
25274--25334	32	1.9	32	89	0	95	22	47	0	29	1.52
25368--25432	21	3.1	21	79	0	76	16	30	13	38	1.88
27664--27711	21	2.4	19	80	13	60	18	16	10	54	1.70
27841--27883	20	2.3	18	82	17	61	18	16	11	53	1.72
27846--27891	20	2.3	19	89	10	74	17	15	10	56	1.67
27631--28104	182	2.6	182	89	1	700	26	16	13	42	1.86
28171--28655	227	2.1	227	94	1	855	39	7	7	45	1.61
29985--30039	28	2.0	28	82	7	67	40	5	10	43	1.63
30702--30755	23	2.2	24	83	6	65	50	1	0	48	1.11
31177--31234	24	2.5	22	79	17	64	53	1	0	44	1.10
31373--31414	21	2.0	21	86	9	59	50	0	0	50	1.00
38421--38446	4	6.5	4	100	0	52	50	0	50	0	1.00
40012--40052	19	2.2	19	86	0	55	29	34	4	31	1.79
42954--43008	21	2.6	21	77	5	58	29	0	5	65	1.15
43340--43447	53	2.0	54	82	5	130	27	13	12	46	1.79
44202--44231	15	2.0	15	100	0	60	33	6	26	33	1.83

Tables:   1

The End!