Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6025995
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 28
Found at i:2979 original size:18 final size:17
Alignment explanation
Indices: 2956--2999 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
2946 CGGTTAAAAA
2956 TGGTTAAAAAAATATGAT
1 TGGTTAAAAAAA-ATGAT
*
2974 TGGTT-AAATAAATGAT
1 TGGTTAAAAAAAATGAT
*
2990 CGGTTAAAAA
1 TGGTTAAAAA
3000 TGACTAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 9 0.41
17 8 0.36
18 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.18, T:0.32
Consensus pattern (17 bp):
TGGTTAAAAAAAATGAT
Found at i:3123 original size:74 final size:73
Alignment explanation
Indices: 3004--3713 Score: 901
Period size: 74 Copynumber: 9.6 Consensus size: 73
2994 TAAAAATGAC
* * * *
3004 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTATATTAAACTACATACCAGTTTCTTT
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACC-GTTTTTTT
*
3069 -AAGGTTGC
65 GAAGGTTGT
* * * * *
3077 TAATAATGTAAACGGTAAAAAAAAATAAGTGCTACATATTACATTAAAATATCTACCGTTTATTT
1 TAATAATGTAAACGGT-AAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCGTTTTTTT
* * *
3142 AAAGATTGC
65 GAAGGTTGT
* *
3151 TAATAATGTAAACGATAAAATAAAATAGGCGCTACCTATTACATTAAAATACCTATCGATTTTTT
1 TAATAATGTAAACGGTAAAA-AAAATAGGCGCTACCTATTACATTAAAATACCTACCG-TTTTTT
3216 TGAAGGTTGT
64 TGAAGGTTGT
* * * **
3226 TAATAATGTAAACGGT-AAAAAAATAGGCGATGCCTATTACATTAAAATACATACCGACTTTTT-
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCGTTTTTTTG
*
3289 AAGATTGT
66 AAGGTTGT
* * **
3297 TAATAATGTAAACGGT-AAAAAAATAGACGCTACCTATTACATTAAAATACTTACATATTTTTTT
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTAC-CGTTTTTTT
*
3361 GAATGTTGT
65 GAAGGTTGT
* * *
3370 TAATAATGTAAACGGTAAAAAAAATAGGTGTTACCCATTACATTAAAATACCTACCGGTTTTTTT
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACC-GTTTTTTT
3435 GAAGGTTGT
65 GAAGGTTGT
* * *
3444 TAAGAATGT-AACGGTAAAAAAAAATAGGCGGCTACCTATTACATTAAAATATCTATCGATTTTT
1 TAATAATGTAAACGGT-AAAAAAAATAGGC-GCTACCTATTACATTAAAATACCTACCG-TTTTT
*
3508 TTTAAGGTTGT
63 TTGAAGGTTGT
* *
3519 TAATAATGTAAAAGGTAAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCAATTTTTT
1 TAATAATGTAAACGGT-AAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACC-GTTTTTT
*
3584 T-AAGTTTGT
64 TGAAGGTTGT
* *
3593 TAATAATGTAAATGGCAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCGATTTTTTT
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCG-TTTTTTT
* *
3658 AAAAGTTGT
65 GAAGGTTGT
*
3667 TAATAATATAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAA
1 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAA
3714 CTACTTATCA
Statistics
Matches: 556, Mismatches: 66, Indels: 29
0.85 0.10 0.04
Matches are distributed among these distances:
71 57 0.10
72 10 0.02
73 135 0.24
74 230 0.41
75 105 0.19
76 19 0.03
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (73 bp):
TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCGTTTTTTTG
AAGGTTGT
Found at i:3538 original size:293 final size:292
Alignment explanation
Indices: 3004--3713 Score: 976
Period size: 293 Copynumber: 2.4 Consensus size: 292
2994 TAAAAATGAC
* * * *
3004 TAATAATGTAAACGGTAAAAAAAATAGGCGCTACCTATTATATTAAACTACATACCAGTTTCTTT
1 TAATAATGTAAACGGT-AAAAAAATAGGCGCTACCTATTACATTAAAATACATA-CAATTTTTTT
* * * * *
3069 AAGGTTGCTAATAATGTAAACGGTAAAAAAAAATAAGTGCTACATATTACATTAAAATATCTACC
64 AAAGTTGTTAATAATGTAAACGGT-AAAAAAAATAGGTGCTACCTATTACATTAAAATACCTACC
* *
3134 GTTTATTTAAAGATTGCTAATAATGTAAACGATAAAATAAAATAGGCGCTACCTATTACATTAAA
128 GTTTATTTAAAGATTGCTAAGAATGTAAACGATAAAAAAAAATAGGCGCTACCTATTACATTAAA
* *
3199 ATACCTATCGATTTTTTTGAAGGTTGTTAATAATGTAAACGGT-AAAAAAATAGGCGATGCCTAT
193 ATACCTATCGATTTTTTTGAAGGTTGTTAATAATGTAAAAGGTAAAAAAAATAGGCGATACCTAT
*
3263 TACATTAAAATACATACCGA-CTTTTTAAGATTGT
258 TACATTAAAATACATACCAATCTTTTTAAGATTGT
* *
3297 TAATAATGTAAACGGTAAAAAAATAGACGCTACCTATTACATTAAAATACTTACATATTTTTTTG
1 TAATAATGTAAACGGTAAAAAAATAGGCGCTACCTATTACATTAAAATACATACA-ATTTTTTT-
* * *
3362 AATGTTGTTAATAATGTAAACGGTAAAAAAAATAGGTGTTACCCATTACATTAAAATACCTACCG
64 AAAGTTGTTAATAATGTAAACGGTAAAAAAAATAGGTGCTACCTATTACATTAAAATACCTACC-
* * * * *
3427 GTTTTTTTGAAGGTTGTTAAGAATGT-AACGGTAAAAAAAAATAGGCGGCTACCTATTACATTAA
128 GTTTATTTAAAGATTGCTAAGAATGTAAACGATAAAAAAAAATAGGC-GCTACCTATTACATTAA
* * *
3491 AATATCTATCGATTTTTTTTAAGGTTGTTAATAATGTAAAAGGTAAAAAAAAATAGGCGCTACCT
192 AATACCTATCGATTTTTTTGAAGGTTGTTAATAATGTAAAAGGT-AAAAAAAATAGGCGATACCT
* * *
3556 ATTACATTAAAATACCTACCAATTTTTTTAAGTTTGT
256 ATTACATTAAAATACATACCAATCTTTTTAAGATTGT
* * * *
3593 TAATAATGTAAATGGCAAAAAAAATAGGCGCTACCTATTACATTAAAATACCTACCGATTTTTTT
1 TAATAATGTAAACGG-TAAAAAAATAGGCGCTACCTATTACATTAAAATACATA-CAATTTTTTT
* *
3658 AAAAGTTGTTAATAATATAAACGGTAAAAAAAATAGGCGCTACCTATTACATTAAA
64 -AAAGTTGTTAATAATGTAAACGGTAAAAAAAATAGGTGCTACCTATTACATTAAA
3714 CTACTTATCA
Statistics
Matches: 368, Mismatches: 40, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
291 2 0.01
292 92 0.25
293 117 0.32
295 37 0.10
296 26 0.07
297 93 0.25
298 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (292 bp):
TAATAATGTAAACGGTAAAAAAATAGGCGCTACCTATTACATTAAAATACATACAATTTTTTTAA
AGTTGTTAATAATGTAAACGGTAAAAAAAATAGGTGCTACCTATTACATTAAAATACCTACCGTT
TATTTAAAGATTGCTAAGAATGTAAACGATAAAAAAAAATAGGCGCTACCTATTACATTAAAATA
CCTATCGATTTTTTTGAAGGTTGTTAATAATGTAAAAGGTAAAAAAAATAGGCGATACCTATTAC
ATTAAAATACATACCAATCTTTTTAAGATTGT
Found at i:4062 original size:113 final size:112
Alignment explanation
Indices: 3804--4044 Score: 401
Period size: 113 Copynumber: 2.1 Consensus size: 112
3794 TAACACATAT
* * *
3804 AAAGCATCGATACTTTATAAAAATGTATCGATACATAACAATATAACAAGTAAAAATATGATAAA
1 AAAGTATCGATACTTTATAAAAATGTATCGATACATAACAATATAACAAGTAAAAAAATGACAAA
* * *
3869 ATCAGTTTCATTATGACAAAACCGGTAAAGAGCTACCGGATATGTTA
66 ACCAGTTTCATTATGAAAAAACCGGTAAAGAGCTACCGAATATGTTA
*
3916 AAAGTATCGATACTTTATAAAAATGTATCGATACATAACAATATAACATGTAAAAAAAATGACAA
1 AAAGTATCGATACTTTATAAAAATGTATCGATACATAACAATATAACAAGT-AAAAAAATGACAA
*
3981 AACCAGTTTCATTATGAAAAAACCGGTAAAGAGCTACCGAATATGTTG
65 AACCAGTTTCATTATGAAAAAACCGGTAAAGAGCTACCGAATATGTTA
4029 AAAGTATCGATACTTT
1 AAAGTATCGATACTTT
4045 TTGTACATGT
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
112 49 0.41
113 71 0.59
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (112 bp):
AAAGTATCGATACTTTATAAAAATGTATCGATACATAACAATATAACAAGTAAAAAAATGACAAA
ACCAGTTTCATTATGAAAAAACCGGTAAAGAGCTACCGAATATGTTA
Found at i:4406 original size:2 final size:2
Alignment explanation
Indices: 4399--4447 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
4389 TATAGACACT
4399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4441 TA TA TA T
1 TA TA TA T
4448 GTATCGATAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10391 original size:40 final size:40
Alignment explanation
Indices: 10336--10438 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
10326 TCGTTTATTT
10336 ATTAAATGAACGAACATAAACAAGATTTTGTGTTCGTTTA
1 ATTAAATGAACGAACATAAACAAGATTTTGTGTTCGTTTA
* *
10376 ATTAAACGAAAGAACATAAACAAGATTTTGTGTTCGTTTA
1 ATTAAATGAACGAACATAAACAAGATTTTGTGTTCGTTTA
*
10416 ATTAAATGAACGAACATGAACAA
1 ATTAAATGAACGAACATAAACAA
10439 ATGACTCGTT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.30
Consensus pattern (40 bp):
ATTAAATGAACGAACATAAACAAGATTTTGTGTTCGTTTA
Found at i:10733 original size:23 final size:23
Alignment explanation
Indices: 10707--10775 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
10697 TATATTTTCA
*
10707 TTTATGTTCATTTATTGTGTTCG
1 TTTACGTTCATTTATTGTGTTCG
** *
10730 TTTACGTTTGTTCATTTGTGTTCG
1 TTTACGTTCATTTA-TTGTGTTCG
*
10754 TTTACCTTCATTGT-TTGTGTTC
1 TTTACGTTCATT-TATTGTGTTC
10776 ATTAATTGTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.10, C:0.13, G:0.17, T:0.59
Consensus pattern (23 bp):
TTTACGTTCATTTATTGTGTTCG
Found at i:12895 original size:53 final size:53
Alignment explanation
Indices: 12831--12932 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
12821 AAGTAAGGCT
* **
12831 TTTTTTAATCTGGGTTTTTGTTTTTAATTTCATTTGTTTCATGCAAAAAGGGC
1 TTTTTTAATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAAGGGC
*
12884 TTTTTTGATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAA
1 TTTTTTAATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAA
12933 TGATGTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.21, C:0.12, G:0.16, T:0.52
Consensus pattern (53 bp):
TTTTTTAATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAAGGGC
Found at i:12942 original size:53 final size:53
Alignment explanation
Indices: 12831--12945 Score: 160
Period size: 53 Copynumber: 2.2 Consensus size: 53
12821 AAGTAAGGCT
* * ** *
12831 TTTTTTAATCTGGGTTTTTGTTTTTAATTTCATTTGTTTCATGCAAAAAGGGC
1 TTTTTTGATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAAGGGA
*
12884 TTTTTTGATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAA-TGA
1 TTTTTTGATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAAGGGA
12936 TGTTTTTGAT
1 T-TTTTTGAT
12946 TGATCTATGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 2 0.04
53 53 0.96
ACGTcount: A:0.20, C:0.10, G:0.17, T:0.53
Consensus pattern (53 bp):
TTTTTTGATCTGGGTTCTTGTTTTTAATTTCATCCGTTTCATGCAAAAAGGGA
Found at i:17121 original size:45 final size:45
Alignment explanation
Indices: 17067--17281 Score: 127
Period size: 45 Copynumber: 4.7 Consensus size: 45
17057 TCGAGTTCAT
17067 GCCGAGCGCTTC-CAGTGGGGAGTAGGCAGGATGACTTGATCTTAC
1 GCCGAGCGCTTCACAGTGGGGAGTAGGCAGGATGA-TTGATCTTAC
* * * * *
17112 GCCGGGCGCTCTAAC-GTGTGGAGTAGGCAGGGTGTTATAAT-ATTTTCAC
1 GCCGAGCGCT-TCACAGTGGGGAGTAGGCAGGATG--AT--TGATCTT-AC
* *** * * ** * * *
17161 GCCGAGCGCTTCACCGTTAAGAGTTGGAAGGGGGATAGAGT-TCAT
1 GCCGAGCGCTTCACAGTGGGGAGTAGGCAGGATGATTGA-TCTTAC
17206 GCCGAGCGCTTC-CAGTGGGGAGTAGGCAGGATGACTTGATCTTAC
1 GCCGAGCGCTTCACAGTGGGGAGTAGGCAGGATGA-TTGATCTTAC
* * *
17251 GCCGGGCGCTCTAAC-GTGTGGAGTAGGCAGG
1 GCCGAGCGCT-TCACAGTGGGGAGTAGGCAGG
17282 GTGTTATAAT
Statistics
Matches: 126, Mismatches: 30, Indels: 27
0.69 0.16 0.15
Matches are distributed among these distances:
44 15 0.12
45 36 0.29
46 36 0.29
47 6 0.05
48 8 0.06
49 25 0.20
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.23
Consensus pattern (45 bp):
GCCGAGCGCTTCACAGTGGGGAGTAGGCAGGATGATTGATCTTAC
Found at i:17138 original size:46 final size:44
Alignment explanation
Indices: 17067--17414 Score: 122
Period size: 46 Copynumber: 7.6 Consensus size: 44
17057 TCGAGTTCAT
* *
17067 GCCGAGCGCTT-CCAGTGGGGAGTAGGCAGGATGACTTGATCTTAC
1 GCCGAGCGCTTAAC-GTGTGGAGTAGGCAGGATGA-TTGATCTTAC
* * *
17112 GCCGGGCGCTCTAACGTGTGGAGTAGGCAGGGTGTTATAAT-ATTTTCAC
1 GCCGAGCGCT-TAACGTGTGGAGTAGGCAGGATG--AT--TGATCTT-AC
* * * * ** * * *
17161 GCCGAGCGCTTCACCGT-TAAGAGTTGGAAGGGGGATAGAGT-TCAT
1 GCCGAGCGCTT-AACGTGT-GGAGTAGGCAGGATGATTGA-TCTTAC
* *
17206 GCCGAGCGCTT-CCAGTGGGGAGTAGGCAGGATGACTTGATCTTAC
1 GCCGAGCGCTTAAC-GTGTGGAGTAGGCAGGATGA-TTGATCTTAC
* * * * * *
17251 GCCGGGCGCTCTAACGTGTGGAGTAGGCAGGGTGTTATAATATCAC
1 GCCGAGCGCT-TAACGTGTGGAGTAGGCAGGATGAT-TGATCTTAC
* ** ** *
17297 GCCGAGCACTTCAACGT-TGAGAGTAGGCAGGGGGACAGAGTGC--AT
1 GCCGAGCGCTT-AACGTGTG-GAGTAGGCAGGATGATTGA-T-CTTAC
* * * *
17342 GCCGAGCGCTT-CCAGAG-GGAAGTAGGCAGGATGACCTGGTCTTAC
1 GCCGAGCGCTTAAC-GTGTGG-AGTAGGCAGGATGA-TTGATCTTAC
*
17387 GCCGAGTGCTCTAACGTGTGGAGTAGGC
1 GCCGAGCGCT-TAACGTGTGGAGTAGGC
17415 CGGGTGAAAT
Statistics
Matches: 221, Mismatches: 51, Indels: 61
0.66 0.15 0.18
Matches are distributed among these distances:
43 5 0.02
44 29 0.13
45 63 0.29
46 81 0.37
47 9 0.04
48 7 0.03
49 27 0.12
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.22
Consensus pattern (44 bp):
GCCGAGCGCTTAACGTGTGGAGTAGGCAGGATGATTGATCTTAC
Found at i:17138 original size:137 final size:138
Alignment explanation
Indices: 16884--17854 Score: 994
Period size: 137 Copynumber: 6.9 Consensus size: 138
16874 TAAGGAATTT
* * * *
16884 CGCCGAGCGCTTCAACATTAAGAGTTGGAAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGTGGG
1 CGCCGAGCGCTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
* * * *
16949 GAGTAGGCCGGATGACCTGATCTTACGCCGGGCGCTCTAATGTATTGG-GTAGGCAGGGTAT-TC
66 GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGT-GTGGAGTAGGCAGGGTATATC
17012 CTATTTTCA
130 CTATTTTCA
* * * *
17021 CGCCGAGCGCTTCACCGTTAAGAGTTGGAAGGGGGATC-GAGTTCATGCCGAGCGCTTCCAGTGG
1 CGCCGAGCGCTTCAACGTTAAGAGTAGGCAGGGGGA-CAGAGTTCATGCCGAGCGCTTCCAGAGG
* * *
17085 GGAGTAGGCAGGATGACTTGATCTTACGCCGGGCGCTCTAACGTGTGGAGTAGGCAGGGTGTTAT
65 GGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCAGGGT-ATAT
**
17150 AATATTTTCA
129 CCTATTTTCA
* * * * *
17160 CGCCGAGCGCTTCACCGTTAAGAGTTGGAAGGGGGATAGAGTTCATGCCGAGCGCTTCCAGTGGG
1 CGCCGAGCGCTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
* * * *
17225 GAGTAGGCAGGATGACTTGATCTTACGCCGGGCGCTCTAACGTGTGGAGTAGGCAGGGTGT-T-A
66 GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCAGGGTATATCC
* *
17288 TAATATCA
131 TATTTTCA
* * *
17296 CGCCGAGCACTTCAACGTTGAGAGTAGGCAGGGGGACAGAGTGCATGCCGAGCGCTTCCAGAGGG
1 CGCCGAGCGCTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
* * * *
17361 AAGTAGGCAGGATGACCTGGTCTTACGCCGAGTGCTCTAACGTGTGGAGTAGGCCGGGTGAAATA
66 GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCAGGGT---AT-
* *
17426 AGATGTGCCTTAATGTCA
127 --A--T-CC-TATTTTCA
* * * *
17444 CGCCGAGCGCTTCAACGTTGAGAGTAGGCAGAGGAGACAGAGTGCATGCCGAGCGCTTCCAAAGG
1 CGCCGAGCGCTTCAACGTTAAGAGTAGGCAG-GGGGACAGAGTTCATGCCGAGCGCTTCCAGAGG
* * *
17509 GGAGTAGGCAGGATGACCTGATCTTACGTCGAGCGCTCTAACGTATGGAGTAGGCAGGG--TGTC
65 GGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCAGGGTATATC
* **
17572 CCAGATTCA
130 CTATTTTCA
* * * * * **
17581 CGCCGAGC-ATCTCAACGTGT-AGGGTAAGCAGGGTAGACAGAGTTCATGCCTAGCGCTTCTTGA
1 CGCCGAGCGCT-TCAACGT-TAAGAGTAGGCAGGG-GGACAGAGTTCATGCCGAGCGCTTCCAGA
* * *
17644 GGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCCCTAACGTGTGGAGTAGGTCGGGTGAA
63 GGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGG-CAGG-G--
17709 ATATAATGCGCT-TTAATATCA
124 -TAT-AT-C-CTATT--T-TCA
* * * * * *
17730 GGTCGAGCGCCTCAACGTGT-GGGGTAGGCAGGGTAGACAGAGTTCATGCCGAGCGCTTCCAGAG
1 CGCCGAGCGCTTCAACGT-TAAGAGTAGGCAGGG-GGACAGAGTTCATGCCGAGCGCTTCCAGAG
* *
17794 GGGAGTAGGCAGGATAACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGAGTAGGCCGGGT
64 GGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTC-TAACGTGTGGAGTAGGCAGGGT
17855 GAAATAAAAT
Statistics
Matches: 725, Mismatches: 73, Indels: 65
0.84 0.08 0.08
Matches are distributed among these distances:
136 123 0.17
137 217 0.30
138 9 0.01
139 134 0.18
144 3 0.00
145 2 0.00
146 1 0.00
147 2 0.00
148 42 0.06
149 192 0.26
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.22
Consensus pattern (138 bp):
CGCCGAGCGCTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCAGGGTATATCC
TATTTTCA
Found at i:17562 original size:149 final size:149
Alignment explanation
Indices: 17288--17861 Score: 684
Period size: 149 Copynumber: 3.9 Consensus size: 149
17278 CAGGGTGTTA
* *
17288 TAATATCACGCCGAGCACTTCAACGTTGAGAGTAGGCAGGG-GGACAGAGTGCATGCCGAGCGCT
1 TAATATCACGCCGAGCGCTTCAACGTTGAGAGTAGGCAGGGTAGACAGAGTGCATGCCGAGCGCT
* * *
17352 TCCAGAGGGAAGTAGGCAGGATGACCTGGTCTTACGCCGAGTGCTCTAACGTGTGGAGTAGGCCG
66 TCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCCG
17417 GGTGAAATAAGATGTGCCT
131 GGTGAAATAAGATGTGCCT
*
17436 TAATGTCACGCCGAGCGCTTCAACGTTGAGAGTAGGCAGAGG-AGACAGAGTGCATGCCGAGCGC
1 TAATATCACGCCGAGCGCTTCAACGTTGAGAGTAGGCAG-GGTAGACAGAGTGCATGCCGAGCGC
* * *
17500 TTCCAAAGGGGAGTAGGCAGGATGACCTGATCTTACGTCGAGCGCTCTAACGTATGGAGTAGG-C
65 TTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCC
*
17564 -AG-G------G-TGT-CC-
130 GGGTGAAATAAGATGTGCCT
* * * * * *
17573 CAGAT-TCACGCCGAGC-ATCTCAACG-TGTAGGGTAAGCAGGGTAGACAGAGTTCATGCCTAGC
1 TA-ATATCACGCCGAGCGCT-TCAACGTTG-AGAGTAGGCAGGGTAGACAGAGTGCATGCCGAGC
** * *
17635 GCTTCTTGAGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCCCTAACGTGTGGAGTAGG
63 GCTTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGG
* * *
17700 TCGGGTGAAATATA-ATGCGCTT
128 CCGGGTGAAATA-AGATGTGCCT
* * * * *
17722 TAATATCAGGTCGAGCGCCTCAACGTGTG-GGGTAGGCAGGGTAGACAGAGTTCATGCCGAGCGC
1 TAATATCACGCCGAGCGCTTCAACGT-TGAGAGTAGGCAGGGTAGACAGAGTGCATGCCGAGCGC
*
17786 TTCCAGAGGGGAGTAGGCAGGATAACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGAGTAGGC
65 TTCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTC-TAACGTGTGGAGTAGGC
17850 CGGGTGAAATAA
129 CGGGTGAAATAA
17862 AATGATTTAG
Statistics
Matches: 365, Mismatches: 38, Indels: 46
0.81 0.08 0.10
Matches are distributed among these distances:
136 5 0.01
137 103 0.28
138 5 0.01
139 4 0.01
140 2 0.01
146 1 0.00
147 3 0.01
148 43 0.12
149 197 0.54
151 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.34, T:0.20
Consensus pattern (149 bp):
TAATATCACGCCGAGCGCTTCAACGTTGAGAGTAGGCAGGGTAGACAGAGTGCATGCCGAGCGCT
TCCAGAGGGGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCCG
GGTGAAATAAGATGTGCCT
Found at i:17759 original size:286 final size:279
Alignment explanation
Indices: 16884--17855 Score: 1133
Period size: 286 Copynumber: 3.4 Consensus size: 279
16874 TAAGGAATTT
* * * * * *
16884 CGCCGAGCGCTTCAACATTAAGAGTTGGAAGGGGGACAGAGTTCATGCCGAGCGCTTCCAGTGGG
1 CGCCGAGCGCTTCAACGTT-GGAGTAGGCAGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
* * * *
16949 GAGTAGGCCGGATGACCTGATCTTACGCCGGGCGCTCTAATGTATTGG-GTAGGCAGGGTATTCC
65 GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTA-TGGAGTAGGCAGGGT-GTCC
* * * * *
17013 TATTTTCACGCCGAGCGCTTCACCGTTAAGAGTTGGAAGGGGGATC-GAGTTCATGCCGAGCGCT
128 TA-ATTCACGCCGAGCACTTCAACGTTAAGAGTAGGCAGGGGGA-CAGAGTTCATGCCGAGCGCT
* * * *
17077 TCCAGTGGGGAGTAGGCAGGATGACTTGATCTTACGCCGGGCGCTCTAACGTGTGGAGTAGGCAG
191 TCCAGAGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGC-G
*
17142 GGTG--TTATAAT---ATT--TTCA
255 GGTGAAATATAATGGCATTAATTCA
* * * * * * *
17160 CGCCGAGCGCTTCACCGTTAAGAGTTGGAAGGGGGATAGAGTTCATGCCGAGCGCTTCCAGTGGG
1 CGCCGAGCGCTTCAACGTT-GGAGTAGGCAGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAGGG
* * * **
17225 GAGTAGGCAGGATGACTTGATCTTACGCCGGGCGCTCTAACGTGTGGAGTAGGCAGGGTGTTATA
65 GAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTATGGAGTAGGCAGGGTGTCCTA
* *
17290 ATATCACGCCGAGCACTTCAACGTTGAGAGTAGGCAGGGGGACAGAGTGCATGCCGAGCGCTTCC
130 AT-TCACGCCGAGCACTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCC
* *
17355 AGAGGGAAGTAGGCAGGATGACCTGGTCTTACGCCGAGTGCTCTAACGTGTGGAGTAGGCCGGGT
194 AGAGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGG-CGGGT
*
17420 GAAATA-AGATGTGCCTTAATGTCA
258 GAAATATA-ATG-GCATTAAT-TCA
* *
17444 CGCCGAGCGCTTCAACGTTGAGAGTAGGCAGAGGAGACAGAGTGCATGCCGAGCGCTTCCAAAGG
1 CGCCGAGCGCTTCAACGTTG-GAGTAGGCAG-GGAGACAGAGTTCATGCCGAGCGCTTCCAGAGG
* *
17509 GGAGTAGGCAGGATGACCTGATCTTACGTCGAGCGCTCTAACGTATGGAGTAGGCAGGGTGTCCC
64 GGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTATGGAGTAGGCAGGGTGTCCT
* * * *
17574 AGATTCACGCCGAGCA-TCTCAACGTGT-AGGGTAAGCAGGGTAGACAGAGTTCATGCCTAGCGC
129 A-ATTCACGCCGAGCACT-TCAACGT-TAAGAGTAGGCAGGG-GGACAGAGTTCATGCCGAGCGC
** *
17637 TTCTTGAGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCCCTAACGTGTGGAGTAGGTC
190 TTCCAGAGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGG-C
*
17702 GGGTGAAATATAATGCGCTTTAATATCA
254 GGGTGAAATATAATG-GCATTAAT-TCA
* * * *
17730 GGTCGAGCGCCTCAACGTGTGGGGTAGGCAGGGTAGACAGAGTTCATGCCGAGCGCTTCCAGAGG
1 CGCCGAGCGCTTCAACGT-TGGAGTAGGCAGGG-AGACAGAGTTCATGCCGAGCGCTTCCAGAGG
* * *
17795 GGAGTAGGCAGGATAACCTGATCTTACGCCGAGCGC-CTTAACGTGTGGAGTAGGCCGGGTG
64 GGAGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTC-TAACGTATGGAGTAGGCAGGGTG
17856 AAATAAAATG
Statistics
Matches: 607, Mismatches: 65, Indels: 38
0.85 0.09 0.05
Matches are distributed among these distances:
274 2 0.00
275 118 0.19
276 115 0.19
277 4 0.01
281 2 0.00
283 1 0.00
284 30 0.05
285 120 0.20
286 212 0.35
287 3 0.00
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.22
Consensus pattern (279 bp):
CGCCGAGCGCTTCAACGTTGGAGTAGGCAGGGAGACAGAGTTCATGCCGAGCGCTTCCAGAGGGG
AGTAGGCAGGATGACCTGATCTTACGCCGAGCGCTCTAACGTATGGAGTAGGCAGGGTGTCCTAA
TTCACGCCGAGCACTTCAACGTTAAGAGTAGGCAGGGGGACAGAGTTCATGCCGAGCGCTTCCAG
AGGGGAGTAGGCAGGATGACCTGGTCTTACGCCGAGCGCTCTAACGTGTGGAGTAGGCGGGTGAA
ATATAATGGCATTAATTCA
Found at i:21466 original size:18 final size:18
Alignment explanation
Indices: 21430--21495 Score: 78
Period size: 18 Copynumber: 3.7 Consensus size: 18
21420 GGCATGATTT
* *
21430 GAACTTGGAACAGAATGC
1 GAACTTGGAGCACAATGC
* *
21448 GAGCTTTGAGCACAATGC
1 GAACTTGGAGCACAATGC
**
21466 GAACTTGGAGCACTTTGC
1 GAACTTGGAGCACAATGC
21484 GAACTTGGAGCA
1 GAACTTGGAGCA
21496 GTGCTTTGAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (18 bp):
GAACTTGGAGCACAATGC
Found at i:21621 original size:72 final size:72
Alignment explanation
Indices: 21504--21927 Score: 674
Period size: 72 Copynumber: 5.9 Consensus size: 72
21494 CAGTGCTTTG
* *
21504 ACTTGAAAGACATTCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
21569 AACTTAA
66 AACTTAA
*
21576 ACTTGAAAGACAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
*
21641 AACCTAA
66 AACTTAA
*
21648 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCA-AATGTTGCAGCAAGAATCAGAACAACA
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAA-GTTGCAGCAAGAATCAGAACATCA
21712 GAACTTAA
65 GAACTTAA
* *
21720 ACCTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCTGAACATCAG
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
21785 AACTTAA
66 AACTTAA
* * * *
21792 ACTTTAAAGACAATCTAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA-GAT
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCA-
*
21856 GAACCTAA
65 GAACTTAA
* *
21864 ACTTGAAAGAAAATCCAGAAGAGAATTTAGAGGAGCA-AATATTGCAGCAAGAATCAGAACATCA
1 ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAA-GTTGCAGCAAGAATCAGAACATCA
21928 ACCAAAAGAA
Statistics
Matches: 326, Mismatches: 21, Indels: 9
0.92 0.06 0.03
Matches are distributed among these distances:
71 5 0.02
72 318 0.98
73 3 0.01
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.16
Consensus pattern (72 bp):
ACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAG
AACTTAA
Found at i:21881 original size:216 final size:216
Alignment explanation
Indices: 21507--21924 Score: 748
Period size: 216 Copynumber: 1.9 Consensus size: 216
21497 TGCTTTGACT
* *
21507 TGAAAGACATTCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAGAAC
1 TGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAGAAC
21572 TTAAACTTGAAAGACAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA
66 TTAAACTTGAAAGACAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA
*
21637 TCAGAACCTAAACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAAATGTTGCAGCAAGAAT
131 TCAGAACCTAAACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAAATATTGCAGCAAGAAT
21702 CAGAACAACAGAACTTAAACC
196 CAGAACAACAGAACTTAAACC
*
21723 TGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCTGAACATCAGAAC
1 TGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAGAAC
* *
21788 TTAAACTTTAAAGACAATCTAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA
66 TTAAACTTGAAAGACAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA
* *
21853 -GATGAACCTAAACTTGAAAGAAAATCCAGAAGAGAATTTAGAGGAGCAAATATTGCAGCAAGAA
131 TCA-GAACCTAAACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAAATATTGCAGCAAGAA
21917 TCAGAACA
195 TCAGAACA
21925 TCAACCAAAA
Statistics
Matches: 193, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
215 1 0.01
216 192 0.99
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (216 bp):
TGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACATCAGAAC
TTAAACTTGAAAGACAATCCAGAAGAGAACTTAGAGGAGCAGAAGTTGCAGCAAGAATCAGAACA
TCAGAACCTAAACTTGAAAGAAAATCCAGAAGAGAACTTAGAGGAGCAAATATTGCAGCAAGAAT
CAGAACAACAGAACTTAAACC
Found at i:42494 original size:147 final size:147
Alignment explanation
Indices: 42223--42519 Score: 479
Period size: 147 Copynumber: 2.0 Consensus size: 147
42213 TCGTCACCAG
* * * * *
42223 TCGACAATGAAACTCTGGCCGAAGTACTCAAGGAGAGAAAACACAATACCATTGGTGATGAAGCT
1 TCGACAATGAAACCCTAGCCGAAGTACCCAAGGAGAGAAAACACAATACCATTGGCGATGAAACT
* *
42288 CCGGTTGAAGTACCCAAGGAGAGCAAACACAATACCATTGGTGATGAAACTCCAATCGAAGTACC
66 CCAGTTGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAATCGAAGTACC
*
42353 TAAGGAGAGCAAGCATA
131 CAAGGAGAGCAAGCATA
* *
42370 TCGACAATGAAACCCTAGTCGAAGTACCCAAGGAGA-ACAAACACAATACTATTGGCGATGAAAC
1 TCGACAATGAAACCCTAGCCGAAGTACCCAAGGAGAGA-AAACACAATACCATTGGCGATGAAAC
*
42434 TCCAGTTGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGTCGAAGTAC
65 TCCAGTTGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAATCGAAGTAC
42499 CCAAGGAGAGCAAGCATA
130 CCAAGGAGAGCAAGCATA
42517 TCG
1 TCG
42520 CCATCGACGA
Statistics
Matches: 138, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
146 1 0.01
147 137 0.99
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (147 bp):
TCGACAATGAAACCCTAGCCGAAGTACCCAAGGAGAGAAAACACAATACCATTGGCGATGAAACT
CCAGTTGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAATCGAAGTACC
CAAGGAGAGCAAGCATA
Found at i:42531 original size:51 final size:51
Alignment explanation
Indices: 42242--42511 Score: 338
Period size: 51 Copynumber: 5.4 Consensus size: 51
42232 AAACTCTGGC
* * * * *
42242 CGAAGTACTCAAGGAGAGAAAACACAATACCATTGGTGATGAAGCTCCGGT
1 CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
* * *
42293 TGAAGTACCCAAGGAGAGCAAACACAATACCATTGGTGATGAAACTCCAAT
1 CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
* * * * *
42344 CGAAGTACCTAAGGAGAGC-AA-GC-AT---ATCGACAATGAAAC-CCTAGT
1 CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCC-AGT
* *
42389 CGAAGTACCCAAGGAGAACAAACACAATACTATTGGCGATGAAACTCCAGT
1 CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
*
42440 TGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
1 CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
42491 CGAAGTACCCAAGGAGAGCAA
1 CGAAGTACCCAAGGAGAGCAA
42512 GCATATCGCC
Statistics
Matches: 187, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.01
45 29 0.16
46 2 0.01
47 1 0.01
48 4 0.02
49 1 0.01
50 2 0.01
51 144 0.77
52 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (51 bp):
CGAAGTACCCAAGGAGAGCAAACACAATACCATTGGCGATGAAACTCCAGT
Found at i:44858 original size:4 final size:4
Alignment explanation
Indices: 44851--49121 Score: 6228
Period size: 4 Copynumber: 1098.2 Consensus size: 4
44841 TGTTCCACAC
*
44851 ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
44899 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
44945 ACAT ACAT ACAT AC-- ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
44989 ACAC ACAT ACAC ACAT ACAT ACAT ACAT AC-- ACAT ACAC ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
45035 ACAT ACAT AC-T ACAT AC-T ACAT AC-- ACAT ACAT ACAT ATAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
45079 AC-- ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
45123 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
45170 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
45218 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
45266 ACAC ACAT ACAT ACAT ACAC ACAT ACAC ACAT ACAC ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
45314 AC-- ACAC ACAT ACAC ACAT ACAC CCAT ACAC ACAT ACACT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T ACAT ACAT
45361 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
45409 ACAT ACAT ACAT ACAC ACAT AC-- ACAC ACAC ACAC ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
45455 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
45503 ACAT ACAA ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT CCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
45551 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACCT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
45599 ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT AC--
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
45644 ACAC ACAT ACAC ACAT ACAT ACAC ACAT ACAT ACAC ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
45692 ACAC ACAT ACAC ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAC ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
45740 ACAC ACAT ACAT ACAT ACAC ACAT ACAC ACAT ACAC ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
45788 ACAT ACAT ACAT ACAT ACA- ACAT AC-T ACAT ACAT AC-T ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
45833 ACA- AC-T ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT AC-T
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
45877 ACAT ACCT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
45925 ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
45973 ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAC ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
46019 ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
46066 ACAT ACAT ACAT ACAT ACAT ATAC ACAT AC-- ACAT ACAT ACAAT ACATT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACA-T
46114 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
46161 ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
46208 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAC ACAT ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
46255 ACAC ACAT ACAT ACAT ACAT ACAT ACAT CCAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46303 ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46350 ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46397 ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
46442 ACAT ACAT AC-T ACAT ACAC ACAC ACAT ACAT AC-- ACAC ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
46487 ACTAC ACAT ACAC ACAT ACAT AC-- ACAC ACAT ACAT ACAC ACAC ACAT
1 AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * * * *
46534 ACAC ACAT ACAC ACAT ACAC ACAT ACAC ATAC ACAC ACAC ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
46582 ACAT ACAC ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
46630 ACAT ACAT --AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
46676 ACAC ACAT ACAT ACAT AC-- ACAT ACAC ACAT ACAC ACAC AGAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
46722 ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT ACAT -CCT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46769 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46815 ACAT ACAT ACAT ACAAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46864 ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46911 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
46959 ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47005 ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47052 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47100 ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
47146 ACAT AC-- ACAT ACAT ACAT ACAC ACAT ACAC ACAT ACAC ATAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47192 ACAT A-AT ACAT ACAT ACAT --AT ACAT ACAG ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47237 ACAT AC-- ACAT ACAT ACAT AC-T ACAT ACAT ACAT AC-T ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47281 ACAT --AT ACAAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47328 AC-- ACAT ACAT ACAT ACAT ACCAT ACAT ACAT ACAT ACCT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT ACAT
47375 ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT ACAT ACAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47419 ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47463 ACAT ACAT AACAT ACAT ACAC ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
47510 ACAT ACAT ACAC ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACTAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT
*
47559 ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47607 ACAT ACAT ACAT ACCAT --AT ACAT ACAT AC-C ACAT ACAT AC-- ACAT
1 ACAT ACAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47651 ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47698 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACTAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT
47746 ACACT ACAT ACAT ACA- AC-T ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47792 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
47840 ACAT --AT ACAT -C-T ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
47882 ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACCT ACAT ACAC ATAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
47928 ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
47975 ACA- ACAT ACAC ACAT ACAC ACAT ACAC ACAT ACAT ACAAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT
* * *
48021 ACAT ACAC ACAT ACAC ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
48069 ACAT ACAT ACAT ACAT ACAT ACAT ACAC ATAC ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
48117 ATAC ACAT ACAT ACAC ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
48164 ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48210 ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48254 ACAT ACAT --AT ACAT ACAT AC-T ACAT AC-T AC-T ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48297 ACAT ACAT ACAT ACAT ACCAT ACAT ATCAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT A-CAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT
48347 ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT AC-T ACAT ACAT ACATT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA-T
* *
48394 ACAT ACCT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAC ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
48440 ACAT ACAC ACAT ACAT ACAT ACAC ACAT ACAT ACAC ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
48488 ACAC ACAT AC-- ACAT ACA- ACAT ACAC ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48533 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48579 ACCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 A-CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48626 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
48674 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48719 ACAT AC-T ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48764 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A-AT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
48811 ACAT ACAT AAAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48858 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48906 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
48954 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
49002 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
49049 ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
49097 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
49122 TAAATCCAGT
Statistics
Matches: 3881, Mismatches: 231, Indels: 310
0.88 0.05 0.07
Matches are distributed among these distances:
2 93 0.02
3 131 0.03
4 3592 0.93
5 65 0.02
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:49610 original size:2 final size:2
Alignment explanation
Indices: 49599--49639 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
49589 CTCAACTTTC
49599 TA TA -A TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49639 T
1 T
49640 CATACGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:49624 original size:17 final size:17
Alignment explanation
Indices: 49599--49637 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
49589 CTCAACTTTC
*
49599 TATAATATATATATATA
1 TATATTATATATATATA
49616 TATATTATATATATATA
1 TATATTATATATATATA
49633 TATAT
1 TATAT
49638 ATCATACGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATATTATATATATATA
Found at i:52093 original size:20 final size:19
Alignment explanation
Indices: 52065--52105 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
52055 TAAAACTAAT
52065 AATAATATAATATATATATA
1 AATAATATAATATA-ATATA
* *
52085 AATATTATAATGTAATATA
1 AATAATATAATATAATATA
52104 AA
1 AA
52106 AAGATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AATAATATAATATAATATA
Found at i:53098 original size:16 final size:19
Alignment explanation
Indices: 53077--53114 Score: 55
Period size: 16 Copynumber: 2.2 Consensus size: 19
53067 AAAAAAAATG
53077 TAAATATA-ATT-TATA-A
1 TAAATATATATTATATATA
53093 TAAATATATATTATATATA
1 TAAATATATATTATATATA
53112 TAA
1 TAA
53115 GGATGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 3 0.16
18 4 0.21
19 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TAAATATATATTATATATA
Found at i:53343 original size:20 final size:20
Alignment explanation
Indices: 53320--53361 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
53310 GAATCCTTCG
53320 TCGTGAAATTGAAATCGAAC
1 TCGTGAAATTGAAATCGAAC
* *
53340 TCGTGAAGTTGAAGTCGAAC
1 TCGTGAAATTGAAATCGAAC
53360 TC
1 TC
53362 AGAGTTCTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (20 bp):
TCGTGAAATTGAAATCGAAC
Found at i:53787 original size:202 final size:206
Alignment explanation
Indices: 53441--53936 Score: 878
Period size: 202 Copynumber: 2.4 Consensus size: 206
53431 ATTGTTTATC
* * *
53441 GACAACCAGCGGTCCCTTTCGTCATGAAGTTGAACCTGCGTTGTCT-GAGTCCAATATCCTTCGT
1 GACAACCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGC
53505 TGTGAAGTTGAAATTGGCTCTAAATTTGAGAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTG
65 TGTGAAGTTGAAATTGGCTCTAAATTTGAGAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTG
53570 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC-TCGC-T-GTTGAAATTGGCTCTAAATTTGA
130 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCGTAGTTGAAATTGGCTCTAAATTTGA
53632 GAAATG-TTGGT
195 GAAATGTTTGGT
53643 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53708 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGTGACAACCAGCGGT-CCTTCGTCGTG
66 GTGAAGTTGAAATTGGCTCTAAATTTGAG-AATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTG
53772 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAATT
130 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGC-GT--AGTTGAAATTGGCTCTAAATT
53837 TGAGAAATGTTTGGT
192 TGAGAAATGTTTGGT
53852 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53917 GTGAAGTTGAAATTGGCTCT
66 GTGAAGTTGAAATTGGCTCT
53937 GGGTAAAACC
Statistics
Matches: 282, Mismatches: 3, Indels: 11
0.95 0.01 0.04
Matches are distributed among these distances:
201 27 0.10
202 108 0.38
203 27 0.10
205 1 0.00
208 29 0.10
209 90 0.32
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.32
Consensus pattern (206 bp):
GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
GTGAAGTTGAAATTGGCTCTAAATTTGAGAATGTTTGGTGACAACCAGCGGTCCCTTCGTCGTGA
AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCGTAGTTGAAATTGGCTCTAAATTTGAG
AAATGTTTGGT
Found at i:53789 original size:104 final size:105
Alignment explanation
Indices: 53441--53936 Score: 886
Period size: 104 Copynumber: 4.8 Consensus size: 105
53431 ATTGTTTATC
* * *
53441 GACAACCAGCGGTCCCTTTCGTCATGAAGTTGAACCTGCGTTGTCT-GAGTCCAATATCCTTCGT
1 GACAACCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGC
53505 TGTGAAGTTGAAATTGGCTCTAAATTTGAG-AATGTTTGGT
65 TGTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
53545 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC-TCGC-
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53608 -T---GTTGAAATTGGCTCTAAATTTGAGAAATG-TTGGT
66 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
53643 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53708 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
66 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
53748 GACAACCAGCGGT-CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53812 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
66 GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
53852 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
1 GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
53917 GTGAAGTTGAAATTGGCTCT
66 GTGAAGTTGAAATTGGCTCT
53937 GGGTAAAACC
Statistics
Matches: 379, Mismatches: 3, Indels: 19
0.95 0.01 0.05
Matches are distributed among these distances:
98 88 0.23
99 8 0.02
101 2 0.01
103 30 0.08
104 162 0.43
105 89 0.23
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.32
Consensus pattern (105 bp):
GACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCT
GTGAAGTTGAAATTGGCTCTAAATTTGAGAAATGTTTGGT
Found at i:54133 original size:1 final size:1
Alignment explanation
Indices: 54127--54152 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
54117 TGTTTGATGA
54127 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
54153 GAAGATGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:54745 original size:52 final size:52
Alignment explanation
Indices: 54672--54772 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
54662 TTTTCTCTTC
* ** *
54672 TTTTTTCTCTTTTTTCTTTTTCAATTTAGGGTGCCCTTTCGGGTTTTCACCT
1 TTTTTTCTCTTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCT
* * *
54724 TTTTTTTTTTTTTTTTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCA
1 TTTTTTCTCTTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCA
54773 TCCTAAGCGA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.09, C:0.20, G:0.13, T:0.58
Consensus pattern (52 bp):
TTTTTTCTCTTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCT
Found at i:60268 original size:150 final size:147
Alignment explanation
Indices: 60001--60296 Score: 549
Period size: 150 Copynumber: 2.0 Consensus size: 147
59991 TCTGAACTCT
60001 GGCAATCTTGCACTTTATGCCTTCTTTGTTGTGGTAACAACAATGGTTGCCATCTTCGTTTTCTA
1 GGCAATCTTGCACTTTATGCCTTCTTTGTTGTGGTAACAACAATGGTTGCCATCTTCGTTTTCTA
60066 TATCTGAATATGGTGCAAGAAATCCTGCCTTTACCATTTGGCTCCATACCCAAGACAAAGGAGAT
66 TATCTGAATATGGTGCAAGAAATCCTGCCTTTACCATTTGGCTCCATACCCAAGACAAAGGAGAT
60131 TTAAACCTCTGAAACACG
131 TT-AACCTCTGAAACACG
60149 GGCAATCTTGCAC-TTATGCCTTCTTTGTTGTGGTAACAACAATGGTTGCCATCTTCGTTTTCTA
1 GGCAATCTTGCACTTTATGCCTTCTTTGTTGTGGTAACAACAATGGTTGCCATCTTCGTTTTCTA
60213 TCGTATCTGAATATGGTGCAAGAAATCCTGCCTTTACCATTTGGCTCCATACCCAAGACAAAGGA
66 ---TATCTGAATATGGTGCAAGAAATCCTGCCTTTACCATTTGGCTCCATACCCAAGACAAAGGA
60278 GATTTAACCTCTGAAACAC
128 GATTTAACCTCTGAAACAC
60297 TTAATTTAAC
Statistics
Matches: 145, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
147 51 0.35
148 13 0.09
149 14 0.10
150 67 0.46
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (147 bp):
GGCAATCTTGCACTTTATGCCTTCTTTGTTGTGGTAACAACAATGGTTGCCATCTTCGTTTTCTA
TATCTGAATATGGTGCAAGAAATCCTGCCTTTACCATTTGGCTCCATACCCAAGACAAAGGAGAT
TTAACCTCTGAAACACG
Found at i:67049 original size:18 final size:16
Alignment explanation
Indices: 67018--67058 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
67008 AAAAAAAATG
67018 TAAATATAATTTATAA
1 TAAATATAATTTATAA
67034 TAAATATATATATTAT-A
1 TAAATATA-AT-TTATAA
67051 T-AATATAA
1 TAAATATAA
67059 GGATGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 1 0.04
16 14 0.61
17 4 0.17
18 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATATAATTTATAA
Found at i:71058 original size:13 final size:14
Alignment explanation
Indices: 71029--71061 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
71019 CCAGGTATTG
*
71029 GTCCCCTCGTCCCC
1 GTCCCCTCGTACCC
71043 GTCCCC-CGTACCC
1 GTCCCCTCGTACCC
71056 GTCCCC
1 GTCCCC
71062 GCTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.03, C:0.64, G:0.15, T:0.18
Consensus pattern (14 bp):
GTCCCCTCGTACCC
Found at i:73858 original size:31 final size:30
Alignment explanation
Indices: 73820--73877 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
73810 GTTCGAGCCT
* *
73820 TTTCGAGTTCGAGTCGAGTTTCAATAATATA
1 TTTCGAGTTCGAGCCGAGCTTC-ATAATATA
73851 TTTCGAGTTCGAGCCGAGCTTCATAAT
1 TTTCGAGTTCGAGCCGAGCTTCATAAT
73878 TTTTAGCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (30 bp):
TTTCGAGTTCGAGCCGAGCTTCATAATATA
Found at i:74671 original size:10 final size:10
Alignment explanation
Indices: 74656--74684 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
74646 CTGTGGACCA
74656 CATCTGCAGG
1 CATCTGCAGG
74666 CATCTGCAGG
1 CATCTGCAGG
74676 CATCTGCAG
1 CATCTGCAG
74685 CAGAAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (10 bp):
CATCTGCAGG
Found at i:74936 original size:22 final size:22
Alignment explanation
Indices: 74889--74935 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
74879 AAATTATTTC
**
74889 AAATAAATCAATCCATATTTTA
1 AAATAAATCAATCCATATAATA
*
74911 AAATAAATCAATCTATACTAATA
1 AAATAAATCAATCCATA-TAATA
74934 AA
1 AA
74936 TTATTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATAAATCAATCCATATAATA
Found at i:74939 original size:54 final size:54
Alignment explanation
Indices: 74875--75058 Score: 327
Period size: 54 Copynumber: 3.4 Consensus size: 54
74865 ACAACTACAA
*
74875 TAATAAATTATTTCAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
74929 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATAC-ATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT-CTATAC
74983 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT-TCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCT-ATAC
75037 TAATAAATTATTTAAAATAAAT
1 TAATAAATTATTTAAAATAAAT
75059 TATTTAAAAA
Statistics
Matches: 126, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
54 125 0.99
55 1 0.01
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
Found at i:74945 original size:32 final size:31
Alignment explanation
Indices: 74907--75058 Score: 151
Period size: 32 Copynumber: 5.4 Consensus size: 31
74897 CAATCCATAT
74907 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATC-ATACTAATAAATTA
74939 TTTAAAATAAATCAATC---C--AT--A-T-
1 TTTAAAATAAATCAATCATACTAATAAATTA
74961 TTTAAAATAAATCAATACATACTAATAAATTA
1 TTTAAAATAAATCAAT-CATACTAATAAATTA
74993 TTTAAAATAAATCAATC---C--AT--A-T-
1 TTTAAAATAAATCAATCATACTAATAAATTA
75015 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAA-TCATACTAATAAATTA
75047 TTTAAAATAAAT
1 TTTAAAATAAAT
75059 TATTTAAAAA
Statistics
Matches: 100, Mismatches: 0, Indels: 40
0.71 0.00 0.29
Matches are distributed among these distances:
22 31 0.31
23 5 0.05
24 2 0.02
26 6 0.06
28 6 0.06
30 2 0.02
31 3 0.03
32 45 0.45
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (31 bp):
TTTAAAATAAATCAATCATACTAATAAATTA
Found at i:74965 original size:22 final size:22
Alignment explanation
Indices: 74939--74981 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
74929 TAATAAATTA
*
74939 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATACATAT
74961 TTTAAAATAAATCAATACATA
1 TTTAAAATAAATCAATACATA
74982 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:74990 original size:22 final size:22
Alignment explanation
Indices: 74941--74989 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
74931 ATAAATTATT
* **
74941 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATACATATAA
74963 TAAAATAAATCAATACATACTAA
1 TAAAATAAATCAATACATA-TAA
74986 TAAA
1 TAAA
74990 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:75019 original size:22 final size:22
Alignment explanation
Indices: 74993--75035 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
74983 TAATAAATTA
74993 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
75015 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
75036 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:75044 original size:22 final size:22
Alignment explanation
Indices: 74995--75043 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
74985 ATAAATTATT
**
74995 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
75017 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
75040 TAAA
1 TAAA
75044 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:75070 original size:15 final size:15
Alignment explanation
Indices: 75038--75122 Score: 82
Period size: 15 Copynumber: 5.3 Consensus size: 15
75028 AATTCATACT
75038 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
*
75052 AATAAATTATTTAAA
1 AATAAATTATTTTAA
*
75067 AATAAACCAATCTATATTTTAT
1 AAT--A--AA--T-TATTTTAA
75089 AATAAATTATTTTAA
1 AATAAATTATTTTAA
75104 AATAAATTATTTTAA
1 AATAAATTATTTTAA
75119 AATA
1 AATA
75123 GATAACCTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
14 9 0.15
15 33 0.56
16 1 0.02
17 1 0.02
18 2 0.03
19 2 0.03
20 1 0.02
21 1 0.02
22 9 0.15
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:77955 original size:24 final size:23
Alignment explanation
Indices: 77902--77956 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
77892 TTTCATGTAA
*
77902 TTATTTTTACGTTTTATGTATTT
1 TTATTTTTACGTTTTATATATTT
77925 TCT-TTTTTAC-TTTAGTATATATTT
1 T-TATTTTTACGTTT--TATATATTT
77949 TTATTTTT
1 TTATTTTT
77957 TTAGATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
22 3 0.11
23 9 0.33
24 15 0.56
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.71
Consensus pattern (23 bp):
TTATTTTTACGTTTTATATATTT
Found at i:78042 original size:4 final size:4
Alignment explanation
Indices: 77991--78145 Score: 76
Period size: 4 Copynumber: 39.8 Consensus size: 4
77981 TATTATCAGT
* * * * * *
77991 TTTA TTAA TTTA TATA TATA TATA TTTA -CTA TTT- TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
78037 TTTA TTATA TATA TGTA TATA TATTA -TT- TTTA TTTA TTTA -TTA -TTA
1 TTTA TT-TA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * *
78083 TTTTA TTTA TTTGT TTTA TTTA TATA TTT- TTTC TTCTT TTTA TTTA TTT-
1 -TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA
*
78132 TTT- TATA TTTA TTT
1 TTTA TTTA TTTA TTT
78146 TACTTACTAT
Statistics
Matches: 119, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
3 23 0.19
4 82 0.69
5 14 0.12
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:78072 original size:32 final size:29
Alignment explanation
Indices: 78027--78131 Score: 101
Period size: 28 Copynumber: 3.6 Consensus size: 29
78017 TACTATTTTT
78027 TATT-TTTTTATTTATTATATATATGTATATA
1 TATTATTTTTATTTATT-TATATAT-TAT-TA
*
78058 TATTATTTTTATTTATTTAT-TATTATTT
1 TATTATTTTTATTTATTTATATATTATTA
* *
78086 TATTTATTTGT-TTTATTTATATATT-TTT
1 TA-TTATTTTTATTTATTTATATATTATTA
* *
78114 TCTTCTTTTTATTTATTT
1 TATTATTTTTATTTATTT
78132 TTTTATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
27 6 0.09
28 23 0.35
29 14 0.22
30 3 0.05
31 7 0.11
32 12 0.18
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (29 bp):
TATTATTTTTATTTATTTATATATTATTA
Found at i:78107 original size:51 final size:49
Alignment explanation
Indices: 77998--78145 Score: 131
Period size: 51 Copynumber: 2.9 Consensus size: 49
77988 AGTTTTATTA
* * *
77998 ATTTATATATATATATATTTA-CTATTTTTTATTTTTTTATTTATTATATAT
1 ATTTATATATAT-TATTTTTATTTATTTATTA-TTTTTTATTTATT-TATAT
* * *
78049 ATGTATATATATTATTTTTATTTATTTATTATTATTTTATTTATTTGTTTT
1 ATTTATATATATTATTTTTATTTATTTATTATT-TTTTATTTATTT-ATAT
* *
78100 ATTTATATAT-TTTTTCTTCTTTTTATTTATT-TTTTTATATTTATTT
1 ATTTATATATATTATT-TT-TATTTATTTATTATTTTT-TATTTATTT
78146 TACTTACTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
50 17 0.21
51 54 0.66
52 11 0.13
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.71
Consensus pattern (49 bp):
ATTTATATATATTATTTTTATTTATTTATTATTTTTTATTTATTTATAT
Found at i:81517 original size:69 final size:69
Alignment explanation
Indices: 81401--81535 Score: 216
Period size: 69 Copynumber: 2.0 Consensus size: 69
81391 TCAAACTATG
* * *
81401 AGATTGATCAAGCACAATCATTTCTGAATCACTGAACCACTTCACTCGAAGATTATAGAGCATCA
1 AGATCGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCATCA
81466 AATA
66 AATA
* * *
81470 AGATCGATCAAGCACAATCATTTCTGAATTACTGAATCACTCCACTCGAAGATCATGGAGCATCA
1 AGATCGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCATCA
81535 A
66 A
81536 GAGAGAGACA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGATCGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCATCA
AATA
Found at i:82506 original size:32 final size:32
Alignment explanation
Indices: 82461--82548 Score: 149
Period size: 32 Copynumber: 2.8 Consensus size: 32
82451 CAATGAGAAA
82461 ATTCAACATCAAATGTTGGGGCATTTTTTTAG
1 ATTCAACATCAAATGTTGGGGCATTTTTTTAG
*
82493 ATTTAACATCAAATGTTGGGGCATTTTTTTAG
1 ATTCAACATCAAATGTTGGGGCATTTTTTTAG
* *
82525 ATTCAACATCGAATATTGGGGCAT
1 ATTCAACATCAAATGTTGGGGCAT
82549 CTTTGGGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (32 bp):
ATTCAACATCAAATGTTGGGGCATTTTTTTAG
Found at i:83140 original size:120 final size:119
Alignment explanation
Indices: 82926--83145 Score: 270
Period size: 120 Copynumber: 1.8 Consensus size: 119
82916 CTCGAGAGTA
* * *
82926 GATTTCAACTTCACGACGAAAGATATCTAGCTCAAAGCCAAACTTCACAATAAATGGGTCATCCA
1 GATTTCAACTTCACAACGAAAGATATCAAGCTCAAAGCCAAACTTCACAATAAATGGGCCATCCA
* *
82991 CGGTTTCAACTTCACGACGAAGGGAATCGTGTCCACCCGCAACATACAATACCTG
66 CGATTTCAACTCCACGACGAAGGGAATCGTG-CCACCCGCAACATACAATACCTG
* * *
83046 GATTTCAACTTCACAACGAATGATATCCAAG-TCAAGGCTC-AACTTCACGATGAAA-GGGCCA-
1 GATTTCAACTTCACAACGAAAGATAT-CAAGCTCAAAGC-CAAACTTCACAAT-AAATGGGCCAT
*
83107 CCTACGATTTCAACTCCACGACGGA-GGATATCGTGCCAC
63 CC-ACGATTTCAACTCCACGACGAAGGGA-ATCGTGCCAC
83146 TCGAGACAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
119 9 0.10
120 70 0.81
121 7 0.08
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (119 bp):
GATTTCAACTTCACAACGAAAGATATCAAGCTCAAAGCCAAACTTCACAATAAATGGGCCATCCA
CGATTTCAACTCCACGACGAAGGGAATCGTGCCACCCGCAACATACAATACCTG
Found at i:83266 original size:106 final size:106
Alignment explanation
Indices: 83144--83465 Score: 475
Period size: 106 Copynumber: 3.0 Consensus size: 106
83134 ATATCGTGCC
* *
83144 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGATGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
83209 ATTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
83250 ACTCGATACAACACAAGTTCAACTTCACAACGAAGGGACGGCTAGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* *
83315 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * **
83356 ACTCGAGACAGCACAAGCTCAACTTCACAACGAAGGGGCGACTGGCTGTCAACAAACAATTTCTT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * * *
83421 ATTTCCAGAGCCAGTTAT-AACTTCACGGCGGAGGATATTGG
66 ATTTTCAGAGCCAATT-TCAACTTCACAGCGAAGGATATTGG
83462 ACTC
1 ACTC
83466 AGAACAATAC
Statistics
Matches: 194, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
106 193 0.99
107 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
ATTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:83814 original size:87 final size:87
Alignment explanation
Indices: 83723--83901 Score: 279
Period size: 87 Copynumber: 2.1 Consensus size: 87
83713 GACAGTTTCT
* *
83723 CTTGAAACATAAACATTGAAACCATTTCCCTTGAAATGAATTTTATCTCGA-TTGAGATAGTTTC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTC-ACTTGAGATAGTTTC
**
83787 CCTTGAAATGAAATTTTGTCTCC
65 CCTTGAAACAAAATTTTGTCTCC
* * *
83810 CTTGAAACTTAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGGGGTAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGAGATAGTTTCC
83875 CTTGAAACAAAATTTTGTCTCC
66 CTTGAAACAAAATTTTGTCTCC
83897 CTTGA
1 CTTGA
83902 GACAGTTTCT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 1 0.01
87 83 0.99
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (87 bp):
CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGAGATAGTTTCC
CTTGAAACAAAATTTTGTCTCC
Found at i:83909 original size:37 final size:37
Alignment explanation
Indices: 83834--84022 Score: 132
Period size: 37 Copynumber: 5.4 Consensus size: 37
83824 ATTGAAAACA
* * * * *
83834 TTTCCCTTGAAA-TAAATTTTATCTCACTTGGGGTAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
83870 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
* * * *
83907 TTTCTCTTGAAACATAAA---------CATTGA-AAACA
1 TTTCCCTTGAAACA-AAATTTTGTCTCCCTTGAGATA-G
* * ** *
83936 TGTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
83972 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
84009 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
84023 TAAACCTTGA
Statistics
Matches: 114, Mismatches: 25, Indels: 27
0.69 0.15 0.16
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 14 0.12
36 26 0.23
37 67 0.59
38 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
Found at i:83925 original size:102 final size:102
Alignment explanation
Indices: 83810--84049 Score: 372
Period size: 102 Copynumber: 2.4 Consensus size: 102
83800 TTTTGTCTCC
* * *
83810 CTTGAAACTTAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGGGGTAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGAGATAGTTTCC
83875 CTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCT
66 CTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCT
* * * * *
83912 CTTGAAACATAAACATTGAAAACATGTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGAGATAGTTTCC
*
83977 CTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCT
66 CTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCT
* * *
84014 CTTGAAACATAAACCTTGAAAACGTTTTCCTTGAAA
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAA
84050 CACAAAATAT
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 124 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (102 bp):
CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCACTTGAGATAGTTTCC
CTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCT
Found at i:84213 original size:102 final size:103
Alignment explanation
Indices: 84096--84286 Score: 273
Period size: 102 Copynumber: 1.9 Consensus size: 103
84086 TTTGAGACAG
*
84096 TTTCCATTGAAACAAAATCTT-GTCTCTCTTGAGACAGTTTCCTTTGA-AAC-AAATTTTGTCTC
1 TTTCCATTGAAAC-AAAT-TTCGTCTCCCTTGAGACAGTTT-CTTTGAGAACTAAATTTTGTCTC
*
84158 TCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCT
63 TCTTGAGACAGGTTCCCTTGAAACAAAATCTTTGAATATCT
* *
84199 TTTCC-TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAGAACTAAGTTTTGTCTCTCT
1 TTTCCATTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTGAGAACTAAATTTTGTCTCTCT
**
84263 TGAGACAGGTTCTTTTGAAACAAA
66 TGAGACAGGTTCCCTTGAAACAAA
84287 TTTTGTCCCT
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
100 7 0.09
101 25 0.32
102 42 0.53
103 5 0.06
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (103 bp):
TTTCCATTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTGAGAACTAAATTTTGTCTCTCT
TGAGACAGGTTCCCTTGAAACAAAATCTTTGAATATCT
Found at i:84299 original size:36 final size:36
Alignment explanation
Indices: 84087--84320 Score: 186
Period size: 36 Copynumber: 6.6 Consensus size: 36
84077 AAAACGAGTT
** * *
84087 TTGAGACAGTTTCCATTGAAACAAAATCTTGTCTCTC
1 TTGAGACAGTTTCTTTTGAAAC-AAATTTTGTCCCTC
* *
84124 TTGAGACAGTTTCCTTTGAAACAAATTTTGTCTCTC
1 TTGAGACAGTTTCTTTTGAAACAAATTTTGTCCCTC
** *
84160 TTGAGACAGTTTCCCTTGAAACAAA----AT--CT-
1 TTGAGACAGTTTCTTTTGAAACAAATTTTGTCCCTC
* *
84189 TTGA-ATA-TCTT-TTCCTTGAAACAAATTTCGTCTCC-C
1 TTGAGACAGT-TTCTT--TTGAAACAAATTTTGTC-CCTC
* *
84225 TTGAGACAGTTTCTTTT-AGAACTAAGTTTTGTCTCTC
1 TTGAGACAGTTTCTTTTGA-AAC-AAATTTTGTCCCTC
*
84262 TTGAGACAGGTTCTTTTGAAACAAATTTTGTCCCTC
1 TTGAGACAGTTTCTTTTGAAACAAATTTTGTCCCTC
*
84298 TTGAGACAGTTTCTCTTGAAACA
1 TTGAGACAGTTTCTTTTGAAACA
84321 CAAAAAAAAC
Statistics
Matches: 162, Mismatches: 17, Indels: 37
0.75 0.08 0.17
Matches are distributed among these distances:
27 1 0.01
28 4 0.02
29 14 0.09
30 2 0.01
32 1 0.01
33 1 0.01
35 1 0.01
36 81 0.50
37 53 0.33
38 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (36 bp):
TTGAGACAGTTTCTTTTGAAACAAATTTTGTCCCTC
Found at i:84538 original size:84 final size:85
Alignment explanation
Indices: 84407--84564 Score: 228
Period size: 84 Copynumber: 1.9 Consensus size: 85
84397 CACCAAACCC
* * * * *
84407 TCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGT
1 TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGAGC
84472 TATCTGTCACCAAAAGACCT
66 TATCTGTCACCAAAAGACCT
** * *
84492 TCGAGTTCGACTATGCTCAGC-TCTAAGGCACATCATTTACAGCATAACTCAAGGCAAGAAGAGC
1 TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGAGC
84556 TATCTGTCA
66 TATCTGTCA
84565 ATAAAATTGT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 46 0.72
85 18 0.28
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (85 bp):
TCGAGTTCGACTACACTCAGCTTCGAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGAGC
TATCTGTCACCAAAAGACCT
Found at i:85604 original size:2 final size:2
Alignment explanation
Indices: 85597--85621 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85587 TTTATTAATT
85597 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
85622 TTACTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85674 original size:41 final size:42
Alignment explanation
Indices: 85607--85692 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 42
85597 TATATATATA
*
85607 TATATATATATATATTTACTA-TTTTTTATTTTTTATTTT-TT
1 TATATATATATATATTTACTACTTTTTTA-TTATTATTTTATT
*
85648 TATATATATATACTATTT-TTACTTTTTTATTATTATTTTATT
1 TATATATATATA-TATTTACTACTTTTTTATTATTATTTTATT
85690 TAT
1 TAT
85693 TTGTTTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
41 23 0.57
42 17 0.43
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (42 bp):
TATATATATATATATTTACTACTTTTTTATTATTATTTTATT
Found at i:85711 original size:46 final size:44
Alignment explanation
Indices: 85586--85746 Score: 132
Period size: 46 Copynumber: 3.6 Consensus size: 44
85576 TTATTACCAA
* * * * * * *
85586 TTTTATTAATTTATATATATATATATATATATATATTTACTATT
1 TTTTATTATTTTATTTATTTTTTTATATATATATTTTTACTTTT
*
85630 TTTTATT-TTTTATTT-TTTTATATATATATACTATTTTTACTTTT
1 TTTTATTATTTTATTTATTTT-TTTATATATA-TATTTTTACTTTT
* *
85674 TTATTATTATTTTATTTATTTGTTTTATTTATATATTTTTTCTTCTT
1 TT-TTATTATTTTATTTATTT-TTTTATATATATATTTTTACTT-TT
85721 TTTCT-TTATTTT-TTATATTTATTTTA
1 TTT-TATTATTTTATT-TATTT-TTTTA
85747 CTTACTATTT
Statistics
Matches: 98, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 16 0.16
44 20 0.20
45 7 0.07
46 36 0.37
47 16 0.16
48 1 0.01
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (44 bp):
TTTTATTATTTTATTTATTTTTTTATATATATATTTTTACTTTT
Found at i:86449 original size:12 final size:12
Alignment explanation
Indices: 86432--86456 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86422 AGTAAAACGG
86432 TTCGGTTCGGTT
1 TTCGGTTCGGTT
86444 TTCGGTTCGGTT
1 TTCGGTTCGGTT
86456 T
1 T
86457 AAAGGCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.32, T:0.52
Consensus pattern (12 bp):
TTCGGTTCGGTT
Found at i:86621 original size:19 final size:18
Alignment explanation
Indices: 86595--86655 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
86585 CGATAAACCG
86595 AACCGAACCGAACCGAAA
1 AACCGAACCGAACCGAAA
*
86613 AACCCGAACTGTTAA---AAA
1 AA-CCGAACCG--AACCGAAA
86631 AACCGAACCGAACCGAAAA
1 AACCGAACCGAACCG-AAA
86650 AACCGA
1 AACCGA
86656 TTTCGATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
15 2 0.06
17 7 0.21
18 7 0.21
19 16 0.47
21 2 0.06
ACGTcount: A:0.51, C:0.30, G:0.15, T:0.05
Consensus pattern (18 bp):
AACCGAACCGAACCGAAA
Found at i:89656 original size:46 final size:42
Alignment explanation
Indices: 89589--89680 Score: 105
Period size: 46 Copynumber: 2.1 Consensus size: 42
89579 ATCATTGATA
* *
89589 TTTTATTATTTATTATAAAATTAATAGATTAGTTAATTTATTATTT
1 TTTTATTATTGATTATAAAATTAATA-ATTA-TT-ATTTA-GATTT
*
89635 TTTTGTTATTGATTA-ACAAATTAATAATTATTATTTAGATTT
1 TTTTATTATTGATTATA-AAATTAATAATTATTATTTAGATTT
89677 TTTT
1 TTTT
89681 TAATGAAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 8 0.19
43 5 0.12
44 2 0.05
45 5 0.12
46 22 0.52
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (42 bp):
TTTTATTATTGATTATAAAATTAATAATTATTATTTAGATTT
Found at i:90070 original size:22 final size:22
Alignment explanation
Indices: 90045--90089 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
90035 AGATTATACG
90045 TAATATGCATGCTTATCATATA
1 TAATATGCATGCTTATCATATA
* *
90067 TAATATGTATGCTTATTATATA
1 TAATATGCATGCTTATCATATA
90089 T
1 T
90090 GTTTTGATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (22 bp):
TAATATGCATGCTTATCATATA
Found at i:92266 original size:17 final size:18
Alignment explanation
Indices: 92228--92274 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
92218 TGTTTATGAG
92228 GGAATTGAAATCTGTGAA
1 GGAATTGAAATCTGTGAA
92246 GGAATTGAAATCTGT-AA
1 GGAATTGAAATCTGTGAA
92263 GGAATTGAAATC
1 GGAATTGAAATC
92275 CAATTCCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.28
Consensus pattern (18 bp):
GGAATTGAAATCTGTGAA
Found at i:92469 original size:9 final size:10
Alignment explanation
Indices: 92453--92477 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92443 AAATATATTA
92453 TAAAAAAAAT
1 TAAAAAAAAT
92463 TAAAAAAAAT
1 TAAAAAAAAT
92473 TAAAA
1 TAAAA
92478 TTTCATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAAAAAAT
Found at i:92930 original size:32 final size:33
Alignment explanation
Indices: 92854--92931 Score: 104
Period size: 34 Copynumber: 2.4 Consensus size: 33
92844 CCTAAACTCG
*
92854 AACCCTACCCGACCCGAATATCACACTTAAAAAA
1 AACCCAACCCGACCCGAATATCACACTT-AAAAA
* *
92888 AACACAACCCGACCTGAATATCACACTT-AAAA
1 AACCCAACCCGACCCGAATATCACACTTAAAAA
*
92920 AACCCGACCCGA
1 AACCCAACCCGA
92932 ACAAAATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 14 0.36
34 25 0.64
ACGTcount: A:0.44, C:0.36, G:0.08, T:0.13
Consensus pattern (33 bp):
AACCCAACCCGACCCGAATATCACACTTAAAAA
Found at i:94558 original size:67 final size:67
Alignment explanation
Indices: 94450--94583 Score: 268
Period size: 67 Copynumber: 2.0 Consensus size: 67
94440 AAAATGCAGC
94450 AGAAGCTGATGCAGATGCAGCCCATGATAGCAGCTTATTATCCCAACAACGTCACTACTGATCAT
1 AGAAGCTGATGCAGATGCAGCCCATGATAGCAGCTTATTATCCCAACAACGTCACTACTGATCAT
94515 AT
66 AT
94517 AGAAGCTGATGCAGATGCAGCCCATGATAGCAGCTTATTATCCCAACAACGTCACTACTGATCAT
1 AGAAGCTGATGCAGATGCAGCCCATGATAGCAGCTTATTATCCCAACAACGTCACTACTGATCAT
94582 AT
66 AT
94584 TCAAGAGGTC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (67 bp):
AGAAGCTGATGCAGATGCAGCCCATGATAGCAGCTTATTATCCCAACAACGTCACTACTGATCAT
AT
Found at i:95552 original size:26 final size:26
Alignment explanation
Indices: 95523--95573 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
95513 TATGCTATGG
* * * *
95523 GACAAATTTATAAAATTTTAAGAAGA
1 GACAAACTTAAAAAAATCTAAGAAGA
95549 GACAAACTTAAAAAAATCTAAGAAG
1 GACAAACTTAAAAAAATCTAAGAAG
95574 TCGAAAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.57, C:0.08, G:0.12, T:0.24
Consensus pattern (26 bp):
GACAAACTTAAAAAAATCTAAGAAGA
Found at i:97774 original size:3 final size:3
Alignment explanation
Indices: 97766--97796 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
97756 AGTTCATGCT
97766 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
97797 GTGTGTGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:104447 original size:18 final size:18
Alignment explanation
Indices: 104424--104462 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
104414 GATATATATA
104424 TATATATATTTTCCCTCT
1 TATATATATTTTCCCTCT
*
104442 TATATATATTTTCCTTCT
1 TATATATATTTTCCCTCT
104460 TAT
1 TAT
104463 GTTGGCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.18, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATATATTTTCCCTCT
Found at i:111259 original size:25 final size:25
Alignment explanation
Indices: 111231--111280 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
111221 ATAGTTTTAC
111231 ACAGTTAAATTTTAATATACTTAAA
1 ACAGTTAAATTTTAATATACTTAAA
111256 ACAGTTAAATTTTAATATACTTAAA
1 ACAGTTAAATTTTAATATACTTAAA
111281 GGTTTGTACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (25 bp):
ACAGTTAAATTTTAATATACTTAAA
Found at i:111980 original size:59 final size:59
Alignment explanation
Indices: 111892--112004 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 59
111882 TTTGACTCCA
* * * * * *
111892 AAAATTAGAATGTTGAAAAATTTATGGATCAATATAGAATGAGAGTCATAGTTTAAGTT
1 AAAATTAGAATATTCAAAAATATAGGGATCAATATAGAAAGAGAGCCATAGTTTAAGTT
* * *
111951 AAAATTAGAATATTCAAAAGTATAGGGATCAATTTTGAAAGAGAGCCATAGTTT
1 AAAATTAGAATATTCAAAAATATAGGGATCAATATAGAAAGAGAGCCATAGTTT
112005 GTAGATGAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 45 1.00
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.32
Consensus pattern (59 bp):
AAAATTAGAATATTCAAAAATATAGGGATCAATATAGAAAGAGAGCCATAGTTTAAGTT
Found at i:132786 original size:55 final size:55
Alignment explanation
Indices: 132720--132832 Score: 172
Period size: 55 Copynumber: 2.1 Consensus size: 55
132710 GCGTTCAGAT
* *
132720 GATTCATGAAGAAGAACATTCGACGAATGAAGAAATTTGAACCTGACTGAAGAAC
1 GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
* * * *
132775 GATTCATGAAGAAGGACATCCGATGAATGAAGAAATTTGAAACTGATTGAAGACC
1 GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
132830 GAT
1 GAT
132833 CCACAAAGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.21
Consensus pattern (55 bp):
GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAAC
Found at i:132842 original size:55 final size:55
Alignment explanation
Indices: 132728--132850 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 55
132718 ATGATTCATG
* * * * **
132728 AAGAAGAACATTCGACGAATGAAGAAATTTGAACCTGACTGAAGAACGATTCATG
1 AAGAAGGACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAACGATCCACA
* * *
132783 AAGAAGGACATCCGATGAATGAAGAAATTTGAAACTGATTGAAGACCGATCCACA
1 AAGAAGGACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAACGATCCACA
*
132838 AAGAAAGACATCC
1 AAGAAGGACATCC
132851 TGAAGATGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (55 bp):
AAGAAGGACATCCGACGAATGAAGAAATTTGAAACTGACTGAAGAACGATCCACA
Found at i:135650 original size:2 final size:2
Alignment explanation
Indices: 135643--135695 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
135633 GTATACCCAA
*
135643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135685 AT AT AT A- AT AT
1 AT AT AT AT AT AT
135696 GTTTATACAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:138374 original size:37 final size:37
Alignment explanation
Indices: 138324--138447 Score: 160
Period size: 37 Copynumber: 3.4 Consensus size: 37
138314 AAAGCCAAGT
* *
138324 CTTCACTAAAGAGTAGTGAAGCAAATCCATTTTGAGC
1 CTTCACCAAAGAGTAGTGAAGCAAATCCATTTTAAGC
*
138361 CTTCACCAAAGAGTAGTGAAGCAAA-CCATCTTAAGC
1 CTTCACCAAAGAGTAGTGAAGCAAATCCATTTTAAGC
* * * *
138397 CTTCATCGAAGAGTAGTGAAGCATATCCTTTTTAAGC
1 CTTCACCAAAGAGTAGTGAAGCAAATCCATTTTAAGC
* *
138434 CTTCTCGAAAGAGT
1 CTTCACCAAAGAGT
138448 GTTGGAGCAA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
36 31 0.42
37 43 0.58
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.27
Consensus pattern (37 bp):
CTTCACCAAAGAGTAGTGAAGCAAATCCATTTTAAGC
Found at i:138409 original size:36 final size:36
Alignment explanation
Indices: 138332--138463 Score: 142
Period size: 37 Copynumber: 3.6 Consensus size: 36
138322 GTCTTCACTA
* * * *
138332 AAGAGTAGTGAAGCAAATCCATTTTGAGCCTTCACCA
1 AAGAGTAGTGAAGCAAA-CCATCTTAAGCCTTCATCG
138369 AAGAGTAGTGAAGCAAACCATCTTAAGCCTTCATCG
1 AAGAGTAGTGAAGCAAACCATCTTAAGCCTTCATCG
* * *
138405 AAGAGTAGTGAAGCATATCCTTTTTAAGCCTTC-TCG
1 AAGAGTAGTGAAGCA-AACCATCTTAAGCCTTCATCG
*
138441 AAAGAGT-GTTGGAGCAAACCATC
1 -AAGAGTAG-TGAAGCAAACCATC
138464 AGACTATCAG
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
36 38 0.47
37 43 0.53
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (36 bp):
AAGAGTAGTGAAGCAAACCATCTTAAGCCTTCATCG
Found at i:139301 original size:54 final size:54
Alignment explanation
Indices: 138824--139282 Score: 756
Period size: 54 Copynumber: 8.5 Consensus size: 54
138814 TTAGTAAAGC
*
138824 AGAAGAAGATGTTCGAGTTTCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
138878 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
*
138932 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAGGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* *
138986 AGAAGAAGATGTTTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCTTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* * *
139040 AGAAGAAGATATTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCAAACCTGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* * *
139094 AGAAGAATATGTTTGAGTTCCATACTCCATAGAGAAAGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* * * * *
139148 AGAATAAGATGCTAGAGTTCCATACTCCCTAGAGAAAGAGGGAGCAAATCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
*
139202 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGATAAAGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* *
139256 AGAAGAAGATGTTTGAGTTCTATACTC
1 AGAAGAAGATGTTCGAGTTCCATACTC
139283 TCTGAAGCAA
Statistics
Matches: 374, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 374 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (54 bp):
AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
Found at i:139383 original size:52 final size:51
Alignment explanation
Indices: 139270--139458 Score: 254
Period size: 51 Copynumber: 3.7 Consensus size: 51
139260 GAAGATGTTT
* * * *
139270 GAGTTCTATACTCTCTGAAGCAATAGGGAGCGGACGCGTTTATTGAAGATC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTATTGAAGATC
* *
139321 GAGTCTTATACTCTCTGAA-AGAATAGGGAGCAGACACATTTTATTGAAGATC
1 GAGTCCTATACTCTCTGAAGA-AATAGGGAGCAGACAC-GTTTATTGAAGATC
* * *
139373 GAGTCCTATACTCTCTGAAGGAATAGGGAGCCGACACGTTTGTTGAAGATC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTATTGAAGATC
* *
139424 AAGTCATATACTCTCTGAAGAAATAGGGAGCAGAC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGAC
139459 TTATCATTTG
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
51 74 0.62
52 46 0.38
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (51 bp):
GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTATTGAAGATC
Found at i:139398 original size:103 final size:103
Alignment explanation
Indices: 139270--139458 Score: 299
Period size: 103 Copynumber: 1.8 Consensus size: 103
139260 GAAGATGTTT
* * * * *
139270 GAGTTCTATACTCTCTGAAGCAATAGGGAGCGGACGCGTTTATTGAAGATCGAGTCTTATACTCT
1 GAGTCCTATACTCTCTGAAGCAATAGGGAGCCGACACGTTTATTGAAGATCAAGTCATATACTCT
139335 CTGAA-AGAATAGGGAGCAGACACATTTTATTGAAGATC
66 CTGAAGA-AATAGGGAGCAGACACATTTTATTGAAGATC
* *
139373 GAGTCCTATACTCTCTGAAGGAATAGGGAGCCGACACGTTTGTTGAAGATCAAGTCATATACTCT
1 GAGTCCTATACTCTCTGAAGCAATAGGGAGCCGACACGTTTATTGAAGATCAAGTCATATACTCT
139438 CTGAAGAAATAGGGAGCAGAC
66 CTGAAGAAATAGGGAGCAGAC
139459 TTATCATTTG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
103 77 0.99
104 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (103 bp):
GAGTCCTATACTCTCTGAAGCAATAGGGAGCCGACACGTTTATTGAAGATCAAGTCATATACTCT
CTGAAGAAATAGGGAGCAGACACATTTTATTGAAGATC
Found at i:143053 original size:23 final size:23
Alignment explanation
Indices: 143009--143107 Score: 99
Period size: 23 Copynumber: 4.2 Consensus size: 23
142999 CGTTTAAATG
**
143009 ATAAACGAACACCAATGTACGAAC
1 ATAAACGAACA-CAATAAACGAAC
143033 ATAAACGAACACAATAAACGAAC
1 ATAAACGAACACAATAAACGAAC
* * * *
143056 GTTAACGAATACAAATGAACGAAC
1 ATAAACGAACAC-AATAAACGAAC
* * *
143080 GTAAACTAACACAATAAATGAAC
1 ATAAACGAACACAATAAACGAAC
143103 ATAAA
1 ATAAA
143108 TGGACGTAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
23 32 0.52
24 30 0.48
ACGTcount: A:0.56, C:0.19, G:0.11, T:0.14
Consensus pattern (23 bp):
ATAAACGAACACAATAAACGAAC
Found at i:143085 original size:47 final size:47
Alignment explanation
Indices: 143012--143102 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 47
143002 TTAAATGATA
* *
143012 AACGAACACCAATGTACGAACATAAACGAACACAATAAACGAACGTT
1 AACGAACACAAATGAACGAACATAAACGAACACAATAAACGAACGTT
* * * *
143059 AACGAATACAAATGAACGAACGTAAACTAACACAATAAATGAAC
1 AACGAACACAAATGAACGAACATAAACGAACACAATAAACGAAC
143103 ATAAATGGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.54, C:0.21, G:0.12, T:0.13
Consensus pattern (47 bp):
AACGAACACAAATGAACGAACATAAACGAACACAATAAACGAACGTT
Found at i:143340 original size:14 final size:14
Alignment explanation
Indices: 143321--143367 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
143311 ATAAAAGGAG
143321 ATAAACGAACGAAC
1 ATAAACGAACGAAC
143335 AT--A--AAC-AAC
1 ATAAACGAACGAAC
*
143344 ATAAACGATCGAAC
1 ATAAACGAACGAAC
143358 ATAAACGAAC
1 ATAAACGAAC
143368 ATATTACCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
9 5 0.19
10 3 0.12
11 1 0.04
12 1 0.04
13 2 0.08
14 14 0.54
ACGTcount: A:0.57, C:0.21, G:0.11, T:0.11
Consensus pattern (14 bp):
ATAAACGAACGAAC
Found at i:143350 original size:23 final size:24
Alignment explanation
Indices: 143294--143370 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
143284 GATTGAGCTA
* * * *
143294 AACATAAATGAATGTACATAAAAG
1 AACATAAACGAACGAACATAAACG
* *
143318 GAGATAAACGAACGAACATAAAC-
1 AACATAAACGAACGAACATAAACG
*
143341 AACATAAACGATCGAACATAAACG
1 AACATAAACGAACGAACATAAACG
143365 AACATA
1 AACATA
143371 TTACCGAACG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
23 20 0.47
24 23 0.53
ACGTcount: A:0.57, C:0.16, G:0.13, T:0.14
Consensus pattern (24 bp):
AACATAAACGAACGAACATAAACG
Found at i:148249 original size:371 final size:370
Alignment explanation
Indices: 147465--153024 Score: 9259
Period size: 371 Copynumber: 15.0 Consensus size: 370
147455 TTTGTAGAGG
* * *
147465 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAATCTTTAAGAGTAGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
**
147530 GAAGCCAACTTTAATTCGTCTACCGGAGTCAATTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
147595 CTTTGTTGCCAACTTAAGCAAATGAGTCTTTAGGAGAGCACTAAGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * * *
147660 TCAAAGTTACCAAAGTTTTCATCCCCCAGACAACAACAGACC-AAATACAAGGTTAACACATTTG
196 TCAAAGTTACCAAAGTTTTCATCCCCCAAACAACAACAGACCAAAATACAAGTTTGACACCTTTG
*
147724 CTTTCATCCACTTTGCGAATCAAGATCTCCAATAAGCCATTGAGAAGGTCAATGAGAGTATGATT
261 CTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATT
147789 GATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
326 GATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
* *
147834 CGTCCTCTTATATGTATGTTATCCTAGTGGAAGAAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
147899 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
147964 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGGGAGCACTATGGGAGTTGTTTAGTCAACACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * *
148029 TCAAAGTTACCAAAGTTTTCATCCCCTCAAACAACAACATACCAAAATACAAGTTTGATACATTT
196 TCAAAGTTACCAAAGTTTTCATCCCC-CAAACAACAACAGACCAAAATACAAGTTTGACACCTTT
* * *
148094 GCTTTCATCCACTTTGCGAATCAAAATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGAATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
*
148159 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAGCAGATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
148205 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTTA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * *
148270 GAATCCAACTTTAATTCGTCTACCAGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAT
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
148335 CTTTGTTGCCAACTTAAGCAAATGACTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
148400 TCAAAGTTACCAAAGTTTTCATCCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTT
148465 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
259 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* *
148530 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATC-GCAGATT
324 TTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
148576 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * * *
148641 GAAGCCAAC-TTAATTCGTCTACCAGAGTCAGCTTACAACCCCATATCGGCGATGATTGGACGA-
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
148704 CTTTGTTGCCAACTT-AGCAAATGAG--TCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* *
148766 TCAAAGTTACCAAAGTTTTCATCTCCCAGAACAACAACAGACCAAAATACAAGTTTGGCACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTTT
* *
148831 GCTTTCATCCACTTTGCGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTAT
260 GCTTTCATCCACTTTGCGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTAT
* * *
148896 GATTGATGGAAGAAAGGTGACGATGCAGA-A-CAAGATATCAGCATATT
322 GATTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
148943 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
149008 GAAGCCAACTTTAATTCGTCTACCGGAGTAAACTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
149073 CTTTGTTGCCAACTTTAGCAAATGAGTCTCTAGGAGAGCACTGTGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
*
149138 TCAAAGTTACCAAAGTTTTCAT-CCCC--AGAACAACAGACCAAAATACAAGTTTGACACCTTTG
196 TCAAAGTTACCAAAGTTTTCATCCCCCAAACAACAACAGACCAAAATACAAGTTTGACACCTTTG
*
149200 CTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAATGTCAATGAGAGTATGATT
261 CTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATT
* *
149265 GATGAAAGAAAGGCGACGATGCAGAGAGCGAGATATCAACAGATT
326 GATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
149310 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGAGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
*
149375 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* **
149440 CTTTTTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * *
149505 TCAAAGTTACCAAAGTTTTCATCCCCCCAGACAGCAACATG-CCAAAATACAAATTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAAACAACAACA-GACCAAAATACAAGTTTGACACCTT
* * *
149569 TGCTTTCATCCATTTTGTGAATCAAGATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
259 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* * *
149634 TTGATGGAAGAAATGTGACAATGCAGAGAGCGAGATATCAACATATT
324 TTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
149681 CATCCTCTTATATGTATGTCATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
149746 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTACAACCCCATATCGACGATGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
149811 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATAGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* *
149876 TCAAAGTTACCAAAGTTTGCATCCCCCCAGACAACAACAGACCAAAATACAAGTTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAAACAACAACAGACCAAAATACAAGTTTGACACCTTT
149941 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * *
150006 TGATAGAAGAAAGGTGACGATACAAAGAGCGAGATATCAACAGATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
150052 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * * * *
150117 GAAGCCAACTTTAATTCATCCACCGGAGTCAACTTACAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
**
150182 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * * *
150247 TCAAAGTTACCAAAGTTTTCATCCCCCTAGATAACAACAGGCCAAAATACAAATTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCC-AAACAACAACAGACCAAAATACAAGTTTGACACCTTT
* * *
150312 GCTTTTATCCATTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGACAATGAGAGTATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * * *
150377 TGATGGAAGGAAGGTGACGATGAAGAGAGCGAGATATCATCAAATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
150423 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCCCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
150488 GAATCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAT
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
150553 CTTTGTTGCCAACTTAAGCAAATGACTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
150618 TCAAAGTTACCAAAGTTTTCATCCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTT
150683 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
259 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* *
150748 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAGCAGATT
324 TTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
150795 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * * *
150860 GAAGCCAACTTTAATTCGTCTACCAGAGTCAGCTTACAACCCCATATCGGCGATGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
150925 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* *
150990 TCAAAGTTACCAAAGTTTTCATCTCCCAGAACAACAACAGACCAAAATACAAGTTTGGCACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTTT
* *
151055 GCTTTCATCCACTTTGCGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTAT
260 GCTTTCATCCACTTTGCGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTAT
* * * *
151120 GATTGATGGAAGAAAGGTGACGATGCAGAGAACAAGATATCAGCATATT
322 GATTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
151169 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
151234 GAAGCCAACTTTAATTCGTCTACCGGAGTAAACTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
151299 CTTTGTTGCCAACTTTAGCAAATGAGTCTCTAGGAGAGCACTGTGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
151364 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTTT
*
151429 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAATGTCAATGAGAGTATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* *
151494 TGATGAAAGAAAGGCGACGATGCAGAGAGCGAGATATCAACAGATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
151540 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGAGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
*
151605 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* **
151670 CTTTTTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * *
151735 TCAAAGTTACCAAAGTTTTCATCCCCCCAGACAGCAACATG-CCAAAATACAAATTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAAACAACAACA-GACCAAAATACAAGTTTGACACCTT
* * *
151799 TGCTTTCATCCATTTTGTGAATCAAGATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
259 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* * *
151864 TTGATGGAAGAAATGTGACAATGCAGAGAGCGAGATATCAACATATT
324 TTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
151911 CATCCTCTTATATGTATGTCATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
151976 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTACAACCCCATATCGACGATGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
152041 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATAGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
*
152106 TCAAAGTTACCAAAGTTTGCATCCCCC---CAGACAACA-ACCAAAATACAAGTTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCAAACA-ACAACAGACCAAAATACAAGTTTGACACCTTT
152167 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * *
152232 TGATAGAAGAAAGGTGACGATACAAAGAGCGAGATATCAACAGATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
152278 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * * * *
152343 GAAGCCAACTTTAATTCATCCACCGGAGTCAACTTACAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
**
152408 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * * *
152473 TCAAAGTTACCAAAGTTTTCATCCCCCTAGATAACAACAGGCCAAAATACAAATTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCC-AAACAACAACAGACCAAAATACAAGTTTGACACCTTT
* * *
152538 GCTTTTATCCATTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGACAATGAGAGTATGAT
260 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * * *
152603 TGATGGAAGGAAGGTGACGATGAAGAGAGCGAGATATCATCAAATT
325 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
*
152649 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCCCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
*
152714 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
152779 CTTTCTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGAT-AGCAT
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAG-TCAGCAC
*
152843 GTCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGGCACCTT
195 GTCAAAGTTACCAAAGTTTTCATCCCCCA-AACAACAACAGACCAAAATACAAGTTTGACACCTT
* *
152908 TGCTTTCATCCACTTTGCGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTA
259 TGCTTTCATCCACTTTGCGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTA
* * *
152973 TGATTGATGGAAGAAAGGTGACAATGCAGAGTGCGAGATATCAGCAGATT
321 TGATTGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
153023 CA
1 CA
153025 CCCTAAGAAG
Statistics
Matches: 4869, Mismatches: 281, Indels: 77
0.93 0.05 0.01
Matches are distributed among these distances:
365 124 0.03
366 71 0.01
367 645 0.13
368 180 0.04
369 244 0.05
370 93 0.02
371 2518 0.52
372 556 0.11
373 5 0.00
374 433 0.09
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (370 bp):
CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
TCAAAGTTACCAAAGTTTTCATCCCCCAAACAACAACAGACCAAAATACAAGTTTGACACCTTTG
CTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATT
GATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATT
Found at i:150159 original size:742 final size:742
Alignment explanation
Indices: 147465--153024 Score: 9460
Period size: 738 Copynumber: 7.5 Consensus size: 742
147455 TTTGTAGAGG
* * *
147465 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAATCTTTAAGAGTAGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
**
147530 GAAGCCAACTTTAATTCGTCTACCGGAGTCAATTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
147595 CTTTGTTGCCAACTTAAGCAAATGAGTCTTTAGGAGAGCACTAAGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
* * *
147660 TCAAAGTTACCAAAGTTTTCATCCCCCAG-ACAACAACAGACC-AAATACAAGGTTAACACATTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
*
147723 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATAAGCCATTGAGAAGGTCAATGAGAGTATGAT
261 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* *
147788 TGATGGAAGAAAGGTGACGATGCAGAGAGCGAGATATCAACAGATTCGTCCTCTTATATGTATGT
326 TGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
*
147853 TATCCTAGTGGAAGAAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
391 TATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
* *
147918 CTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGACCTTTGTTGCCAACTTAAGC
456 CTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAGC
* **
147983 AAATGAGTCTCTAGGGGAGCACTATGGGAGTTGTTTAGTCAACACGTCAAAGTTACCAAAGTTTT
521 AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
* * * * * * *
148048 CATCCCCTCAAACAACAACATACCAAAATACAAGTTTGATACATTTGCTTTCATCCACTTTGCGA
586 CATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCGA
* * *
148113 ATCAAAATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGAATGATTGATGGAAGAAAGGTGACG
651 ATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGACG
*
148178 ATGCAGAGAGCGAGATATCAGCAGATT
716 ATGCAGAGAGCGAGATATCAGCATATT
*
148205 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTTA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* * *
148270 GAATCCAACTTTAATTCGTCTACCAGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAT
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
148335 CTTTGTTGCCAACTTAAGCAAATGACTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
148400 TCAAAGTTACCAAAGTTTTCATCCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
148465 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
260 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
*
148530 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATC-GCAGATTCATCCTCTTATATGTATG
325 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
148594 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAAC-TTAATTCG
390 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCG
* *
148658 TCTACCAGAGTCAGCTTACAACCCCATATCGGCGATGATTGGACGA-CTTTGTTGCCAACTT-AG
455 TCTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
**
148721 CAAATGAG--TCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACGTCAAAGTTACCAAAGTTT
520 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
* * * *
148784 TCAT-CTCCCAGAACAACAACA-GACCAAAATACAAGTTTGGCACCTTTGCTTTCATCCACTTTG
585 TCATCCCCCCAG-ACAACAACATG-CCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTG
* *
148847 CGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAG
648 CGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAG
*
148912 GTGACGATGCAGA-A-CAAGATATCAGCATATT
710 GTGACGATGCAGAGAGCGAGATATCAGCATATT
148943 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
149008 GAAGCCAACTTTAATTCGTCTACCGGAGTAAACTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
149073 CTTTGTTGCCAACTTTAGCAAATGAGTCTCTAGGAGAGCACTGTGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
149138 TCAAAGTTACCAAAGTTTTCAT-CCCCAG---AACAACAGACCAAAATACAAGTTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
*
149199 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAATGTCAATGAGAGTATGAT
261 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * *
149264 TGATGAAAGAAAGGCGACGATGCAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
326 TGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
*
149329 TATCCTAGTGGAAGGAACAATGAGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
391 TATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
* *
149394 CTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGACCTTTTTTGCCAACTTAAGC
456 CTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAGC
149459 AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
521 AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
* *
149524 CATCCCCCCAGACAGCAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGTGA
586 CATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCGA
* * *
149589 ATCAAGATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAATGTGACA
651 ATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGACG
*
149654 ATGCAGAGAGCGAGATATCAACATATT
716 ATGCAGAGAGCGAGATATCAGCATATT
*
149681 CATCCTCTTATATGTATGTCATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
149746 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTACAACCCCATATCGACGATGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
149811 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATAGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
*
149876 TCAAAGTTACCAAAGTTTGCATCCCCCCAG-ACAACAACAGACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
149940 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
260 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* *
150005 TTGATAGAAGAAAGGTGACGATACAAAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
325 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
*
150070 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCA
390 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCG
* *
150135 TCCACCGGAGTCAACTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
455 TCTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
150200 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
520 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
* * * *
150265 TCATCCCCCTAGATAACAACAGGCCAAAATACAAATTTGACACCTTTGCTTTTATCCATTTTGCG
585 TCATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCG
* *
150330 AATCAAGATCTCCAATCAGCCATTGAGAAGGACAATGAGAGTATGATTGATGGAAGGAAGGTGAC
650 AATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGAC
* * *
150395 GATGAAGAGAGCGAGATATCATCAAATT
715 GATGCAGAGAGCGAGATATCAGCATATT
*
150423 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCCCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
150488 GAATCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAT
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
150553 CTTTGTTGCCAACTTAAGCAAATGACTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
150618 TCAAAGTTACCAAAGTTTTCATCCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCAT-CCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
150683 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
260 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
*
150748 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAGCAGATTCATCCTCTTATATGTATG
325 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
150813 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCG
390 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCG
* *
150878 TCTACCAGAGTCAGCTTACAACCCCATATCGGCGATGATTGGACGACCTTTGTTGCCAACTTAAG
455 TCTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
**
150943 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACGTCAAAGTTACCAAAGTTT
520 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
* * * *
151008 TCAT-CTCCCAGAACAACAACA-GACCAAAATACAAGTTTGGCACCTTTGCTTTCATCCACTTTG
585 TCATCCCCCCAG-ACAACAACATG-CCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTG
* *
151071 CGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAG
648 CGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAG
* *
151136 GTGACGATGCAGAGAACAAGATATCAGCATATT
710 GTGACGATGCAGAGAGCGAGATATCAGCATATT
151169 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
151234 GAAGCCAACTTTAATTCGTCTACCGGAGTAAACTTGCAACCCCATATCGACGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
151299 CTTTGTTGCCAACTTTAGCAAATGAGTCTCTAGGAGAGCACTGTGGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
151364 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
*
151429 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAATGTCAATGAGAGTATGAT
261 GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
* * *
151494 TGATGAAAGAAAGGCGACGATGCAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
326 TGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
*
151559 TATCCTAGTGGAAGGAACAATGAGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
391 TATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
* *
151624 CTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGACCTTTTTTGCCAACTTAAGC
456 CTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAGC
151689 AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
521 AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
* *
151754 CATCCCCCCAGACAGCAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGTGA
586 CATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCGA
* * *
151819 ATCAAGATCTCTAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAATGTGACA
651 ATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGACG
*
151884 ATGCAGAGAGCGAGATATCAACATATT
716 ATGCAGAGAGCGAGATATCAGCATATT
*
151911 CATCCTCTTATATGTATGTCATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
* *
151976 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTACAACCCCATATCGACGATGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
*
152041 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATAGGAGTTGTTTAGTCAGCACG
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
*
152106 TCAAAGTTACCAAAGTTTGCATCCCCC----CAGACAACA-ACCAAAATACAAGTTTGACACCTT
196 TCAAAGTTACCAAAGTTTTCATCCCCCAGAACA-ACAACAGACCAAAATACAAGTTTGACACCTT
152166 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
260 TGCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGA
* *
152231 TTGATAGAAGAAAGGTGACGATACAAAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
325 TTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATG
*
152296 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCA
390 TTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCG
* *
152361 TCCACCGGAGTCAACTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
455 TCTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAG
152426 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
520 CAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTT
* * * *
152491 TCATCCCCCTAGATAACAACAGGCCAAAATACAAATTTGACACCTTTGCTTTTATCCATTTTGCG
585 TCATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCG
* *
152556 AATCAAGATCTCCAATCAGCCATTGAGAAGGACAATGAGAGTATGATTGATGGAAGGAAGGTGAC
650 AATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGAC
* * *
152621 GATGAAGAGAGCGAGATATCATCAAATT
715 GATGCAGAGAGCGAGATATCAGCATATT
*
152649 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCCCTTCA
1 CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
*
152714 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGGCGGTGATTGGACGAC
66 GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
* *
152779 CTTTCTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGAT-AGCAT
131 CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAG-TCAGCAC
*
152843 GTCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGGCACCTT
195 GTCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTT
* *
152908 TGCTTTCATCCACTTTGCGAATTAAAAGGATCTCCAATCAGTCATTGAGAAGGTCAATGAGAGTA
260 TGCTTTCATCCACTTTGCGAA-T-CAA-GATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTA
* * * *
152973 TGATTGATGGAAGAAAGGTGACAATGCAGAGTGCGAGATATCAGCAGATTCA
322 TGATTGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCA
153025 CCCTAAGAAG
Statistics
Matches: 4549, Mismatches: 231, Indels: 75
0.94 0.05 0.02
Matches are distributed among these distances:
733 132 0.03
734 79 0.02
735 51 0.01
736 87 0.02
737 120 0.03
738 1142 0.25
739 125 0.03
740 296 0.07
741 63 0.01
742 1141 0.25
743 523 0.11
744 4 0.00
745 491 0.11
746 295 0.06
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (742 bp):
CATCCTCTTATATGTATGTTATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCA
GAAGCCAACTTTAATTCGTCTACCGGAGTCAGCTTGCAACCCCATATCGACGGTGATTGGACGAC
CTTTGTTGCCAACTTAAGCAAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCAGCACG
TCAAAGTTACCAAAGTTTTCATCCCCCAGAACAACAACAGACCAAAATACAAGTTTGACACCTTT
GCTTTCATCCACTTTGCGAATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGAT
TGATGGAAGAAAGGTGACGATACAGAGAGCGAGATATCAACAGATTCATCCTCTTATATGTATGT
TATCCTAGTGGAAGGAACAATGGGAGAAACTTCAAGAGTCGCTTCAGAAGCCAACTTTAATTCGT
CTACCGGAGTCAGCTTACAACCCCATATCGGCGGTGATTGGACGACCTTTGTTGCCAACTTAAGC
AAATGAGTCTCTAGGAGAGCACTATGGGAGTTGTTTAGTCATTACGTCAAAGTTACCAAAGTTTT
CATCCCCCCAGACAACAACATGCCAAAATACAAATTTGACACCTTTGCTTTCATCCATTTTGCGA
ATCAAGATCTCCAATCAGCCATTGAGAAGGTCAATGAGAGTATGATTGATGGAAGAAAGGTGACG
ATGCAGAGAGCGAGATATCAGCATATT
Found at i:155438 original size:10 final size:10
Alignment explanation
Indices: 155425--155479 Score: 62
Period size: 10 Copynumber: 5.7 Consensus size: 10
155415 CGTTCAGTAA
155425 TATGTTCATT
1 TATGTTCATT
155435 TATGTTCATT
1 TATGTTCATT
*
155445 CAT-TT-ATGT
1 TATGTTCAT-T
*
155454 T-CGTTCATT
1 TATGTTCATT
155463 TATGTTCATT
1 TATGTTCATT
155473 TATGTTC
1 TATGTTC
155480 GTTCGTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 2 0.05
9 7 0.19
10 28 0.76
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (10 bp):
TATGTTCATT
Found at i:155460 original size:28 final size:26
Alignment explanation
Indices: 155428--155503 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 26
155418 TCAGTAATAT
155428 GTTCATTTATGTTCATTCATTTATGTTC
1 GTTCATTTATG-TC-TTCATTTATGTTC
155456 GTTCATTTATG--TTCATTTATGTTC
1 GTTCATTTATGTCTTCATTTATGTTC
*
155480 GTTCGTTTATGTGCGTTCATTTAT
1 GTTCATTTATGT-C-TTCATTTAT
155504 ATTTAACACA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 23 0.53
28 20 0.47
ACGTcount: A:0.16, C:0.13, G:0.14, T:0.57
Consensus pattern (26 bp):
GTTCATTTATGTCTTCATTTATGTTC
Found at i:155469 original size:38 final size:38
Alignment explanation
Indices: 155425--155503 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
155415 CGTTCAGTAA
*
155425 TATGTTCATTTATGTTCATTCATTTATGTTCGTTCATT
1 TATGTTCATTTATGTTCATTCATTTATGTGCGTTCATT
* *
155463 TATGTTCATTTATGTTCGTTCGTTTATGTGCGTTCATT
1 TATGTTCATTTATGTTCATTCATTTATGTGCGTTCATT
155501 TAT
1 TAT
155504 ATTTAACACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.16, C:0.13, G:0.14, T:0.57
Consensus pattern (38 bp):
TATGTTCATTTATGTTCATTCATTTATGTGCGTTCATT
Found at i:155483 original size:14 final size:14
Alignment explanation
Indices: 155428--155503 Score: 97
Period size: 14 Copynumber: 5.7 Consensus size: 14
155418 TCAGTAATAT
155428 GTTCATTTATGTTC
1 GTTCATTTATGTTC
*
155442 ATTCATTTATGTTC
1 GTTCATTTATGTTC
155456 GTTCATTTA---T-
1 GTTCATTTATGTTC
155466 GTTCATTTATGTTC
1 GTTCATTTATGTTC
* *
155480 GTTCGTTTATGTGC
1 GTTCATTTATGTTC
155494 GTTCATTTAT
1 GTTCATTTAT
155504 ATTTAACACA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
10 9 0.17
11 1 0.02
13 1 0.02
14 42 0.79
ACGTcount: A:0.16, C:0.13, G:0.14, T:0.57
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:156195 original size:2 final size:2
Alignment explanation
Indices: 156188--156247 Score: 70
Period size: 2 Copynumber: 31.0 Consensus size: 2
156178 TCATTTAAAT
* *
156188 TA TA TA TA TA TA TA TA TA TA TA TA -A TA TT TA TA TA TT TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
156228 TT TA AA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
156248 CCCAGCCCGA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:168647 original size:16 final size:16
Alignment explanation
Indices: 168628--168778 Score: 74
Period size: 16 Copynumber: 9.4 Consensus size: 16
168618 CAAATCATTT
*
168628 CCGAACCAAAATTAAC
1 CCGAACCGAAATTAAC
** **
168644 CCGAATTGAAAGCAAC
1 CCGAACCGAAATTAAC
**
168660 ATGAACCGAAATTAAC
1 CCGAACCGAAATTAAC
**
168676 CCGAACCGAAAGCAAC
1 CCGAACCGAAATTAAC
* *
168692 CCAAACCAAAATTAAC
1 CCGAACCGAAATTAAC
* * ** *
168708 CCAAACTGAAAGAAAT
1 CCGAACCGAAATTAAC
168724 CCGAACC-AAATTTTAAC
1 CCGAACCGAAA--TTAAC
* *
168741 TCG-ACCTGAAAGTAAC
1 CCGAACC-GAAATTAAC
* *
168757 CCAAACCGAATTTAAC
1 CCGAACCGAAATTAAC
168773 CC-AACC
1 CCGAACC
168779 TAAAAACAAT
Statistics
Matches: 95, Mismatches: 35, Indels: 11
0.67 0.25 0.08
Matches are distributed among these distances:
15 7 0.07
16 78 0.82
17 7 0.07
18 3 0.03
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (16 bp):
CCGAACCGAAATTAAC
Found at i:168672 original size:32 final size:32
Alignment explanation
Indices: 168629--168816 Score: 128
Period size: 32 Copynumber: 5.8 Consensus size: 32
168619 AAATCATTTC
*
168629 CGAACCAAAATTAACCCGAATTGAAAGCAACA
1 CGAACCAAAATTAACCCGAACTGAAAGCAACA
* * * *
168661 TGAACCGAAATTAACCCGAACCGAAAGCAACC
1 CGAACCAAAATTAACCCGAACTGAAAGCAACA
* * *
168693 CAAACCAAAATTAACCCAAACTGAAAGAAATC-
1 CGAACCAAAATTAACCCGAACTGAAAGCAA-CA
* * * * *
168725 CGAACCAAATTTTAACTCGACCTGAAAGTAACC
1 CGAACCAAA-ATTAACCCGAACTGAAAGCAACA
* * * * * **
168758 CAAACCGAATTTAACCC-AACCTAAAAACAATT
1 CGAACCAAAATTAACCCGAA-CTGAAAGCAACA
** *
168790 CGAATGAAAATTAACCCAAACTGAAAG
1 CGAACCAAAATTAACCCGAACTGAAAG
168817 GAAGAAACCT
Statistics
Matches: 118, Mismatches: 33, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
31 1 0.01
32 91 0.77
33 26 0.22
ACGTcount: A:0.48, C:0.26, G:0.11, T:0.15
Consensus pattern (32 bp):
CGAACCAAAATTAACCCGAACTGAAAGCAACA
Found at i:168730 original size:64 final size:64
Alignment explanation
Indices: 168631--168776 Score: 165
Period size: 65 Copynumber: 2.3 Consensus size: 64
168621 ATCATTTCCG
* *
168631 AACCAAAATTAACCCGAATTGAAAGCAACATGAACCGAAA-TTAACCCGAACC-GAAAGCAACCC
1 AACCAAAATTAACCCAAACTGAAAGCAACATGAACC-AAATTTAACCCG-ACCTGAAAGCAACCC
168694 A
64 A
* *
168695 AACCAAAATTAACCCAAACTGAAAG-AA-ATCCGAACCAAATTTTAACTCGACCTGAAAGTAACC
1 AACCAAAATTAACCCAAACTGAAAGCAACAT--GAACCAAA-TTTAACCCGACCTGAAAGCAACC
168758 CA
63 CA
* *
168760 AACCGAATTTAACCCAA
1 AACCAAAATTAACCCAA
168777 CCTAAAAACA
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
62 2 0.03
63 5 0.07
64 31 0.44
65 33 0.46
ACGTcount: A:0.48, C:0.27, G:0.10, T:0.14
Consensus pattern (64 bp):
AACCAAAATTAACCCAAACTGAAAGCAACATGAACCAAATTTAACCCGACCTGAAAGCAACCCA
Found at i:170706 original size:29 final size:29
Alignment explanation
Indices: 170664--170724 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
170654 GGCAAGCATA
170664 TTAACGTCGATTAACGTTGAGAGATTAAT
1 TTAACGTCGATTAACGTTGAGAGATTAAT
* * *
170693 TTAATGTCGATTAATGTTGAGGGATTAAT
1 TTAACGTCGATTAACGTTGAGAGATTAAT
170722 TTA
1 TTA
170725 TAACCCACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (29 bp):
TTAACGTCGATTAACGTTGAGAGATTAAT
Found at i:181893 original size:6 final size:6
Alignment explanation
Indices: 181874--181907 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
181864 TATTTAATAT
*
181874 ATATT- ATATAA ATATTA ATATTA ATATTA ATATT
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATT
181908 TTTTAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:188462 original size:14 final size:14
Alignment explanation
Indices: 188443--188480 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
188433 TAATAACAAA
188443 TAAAACAATGAATC
1 TAAAACAATGAATC
*
188457 TAAAACTGATGAATC
1 TAAAAC-AATGAATC
188472 TAAAACAAT
1 TAAAACAAT
188481 ATGGTGAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.24
Consensus pattern (14 bp):
TAAAACAATGAATC
Found at i:192576 original size:18 final size:18
Alignment explanation
Indices: 192555--192594 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
192545 TTTGTAACCG
* *
192555 TATTATATTTGGGTTTTA
1 TATTATATTTGGATGTTA
*
192573 TATTATGTTTGGATGTTA
1 TATTATATTTGGATGTTA
192591 TATT
1 TATT
192595 GGTCAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (18 bp):
TATTATATTTGGATGTTA
Found at i:198792 original size:40 final size:40
Alignment explanation
Indices: 198748--198828 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
198738 TGCATGAAAC
198748 TGGAGTTTTGAGCAAGATTCTATACACCAACAGCTGAATA
1 TGGAGTTTTGAGCAAGATTCTATACACCAACAGCTGAATA
*
198788 TGGAGTTTTGAGCAAGATTCTTTACACCAACAGCTGAATA
1 TGGAGTTTTGAGCAAGATTCTATACACCAACAGCTGAATA
198828 T
1 T
198829 CATCTTCGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (40 bp):
TGGAGTTTTGAGCAAGATTCTATACACCAACAGCTGAATA
Found at i:199660 original size:60 final size:60
Alignment explanation
Indices: 199593--199728 Score: 177
Period size: 60 Copynumber: 2.3 Consensus size: 60
199583 TAACATATGA
* * *
199593 ATAGTCAGATAATTATTTTGTAACTTTTAATAGTCGAATGA-TCCAACAAAACAATGT-TCT
1 ATAGTCAGATAATCATTTTATAACTTTTAATAGTCGAATGACT-CAACAAAACAACGTCT-T
* * *
199653 ATAGTCAGATGATCATTTTATAACTTTTAATAGTTGAATGACTCAACAAAGCAACGTCTT
1 ATAGTCAGATAATCATTTTATAACTTTTAATAGTCGAATGACTCAACAAAACAACGTCTT
*
199713 ATAGTCAGATGATCAT
1 ATAGTCAGATAATCAT
199729 AAGAGATGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
60 66 0.97
61 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (60 bp):
ATAGTCAGATAATCATTTTATAACTTTTAATAGTCGAATGACTCAACAAAACAACGTCTT
Found at i:199762 original size:14 final size:14
Alignment explanation
Indices: 199742--199781 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
199732 AGATGAGCAA
199742 ATGATTATATGACT
1 ATGATTATATGACT
* *
199756 GTGATTATGTGACT
1 ATGATTATATGACT
199770 ATGAGTTATATG
1 ATGA-TTATATG
199782 CGATAATAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.42
Consensus pattern (14 bp):
ATGATTATATGACT
Found at i:200085 original size:21 final size:21
Alignment explanation
Indices: 200025--200085 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
200015 AGTCGAGGGT
200025 TACATAGGTCATTCGGGACATA
1 TACATAGGTCATTCGGGACA-A
*
200047 TACATAGGTCATTTGGGAC-A
1 TACATAGGTCATTCGGGACAA
*
200067 TACATGAGGTCCTTCGGGA
1 TACAT-AGGTCATTCGGGA
200086 TAAATTTCGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.17
21 11 0.31
22 18 0.51
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (21 bp):
TACATAGGTCATTCGGGACAA
Found at i:205441 original size:14 final size:14
Alignment explanation
Indices: 205422--205459 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
205412 GTTGACAGCT
*
205422 AGCCTGCTGAGCAG
1 AGCCTGCCGAGCAG
205436 AGCCTGCCGAGCAG
1 AGCCTGCCGAGCAG
205450 AGCCTGCCGA
1 AGCCTGCCGA
205460 TGGATCATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.34, G:0.34, T:0.11
Consensus pattern (14 bp):
AGCCTGCCGAGCAG
Found at i:208874 original size:25 final size:25
Alignment explanation
Indices: 208822--208874 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
208812 CTTAAACTAT
* *
208822 TACTTTTATCTTATTTTGATATCTA
1 TACTTTTATCTTATTTTAAAATCTA
*
208847 TACTTTTATCTTTTTTTCAAAATC-A
1 TACTTTTATCTTATTTT-AAAATCTA
208872 TAC
1 TAC
208875 CTAACGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (25 bp):
TACTTTTATCTTATTTTAAAATCTA
Found at i:211384 original size:39 final size:39
Alignment explanation
Indices: 211320--211751 Score: 594
Period size: 39 Copynumber: 10.9 Consensus size: 39
211310 ACAAAGACAA
* * * * *
211320 GAGGCAGTTGAGAAGAATCGCGCTCTTGAACAGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
* * * *
211359 GATGCAGTTGAGAAAGATCGTGCTCTTGAGCCGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
* * * *
211398 GAGGCAACTGAGATGGATCGTGCTGTTGAGCCGTCTAAGGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCT---GAG
* *
211440 GAGGCAACTGAGAAGGATCGTGCTCTTGAGGCAGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGA-GCGGTCTGAG
211480 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGGCGGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGA-GCGGTCTGAG
*
211520 GAGGCAGCTGAGAAGAATCGTGCTCTTGAGGCGGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGA-GCGGTCTGAG
*
211560 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTTAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
*
211599 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTTAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
* *
211638 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGTGATCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
* * *
211677 GAGGCAGTTAAGAAGGATCGTGCTCTTGAGCCGTCTGAG
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
*
211716 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCTGTCT
1 GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCT
211752 AAATATGAAT
Statistics
Matches: 358, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
39 214 0.60
40 108 0.30
42 30 0.08
43 6 0.02
ACGTcount: A:0.23, C:0.18, G:0.38, T:0.22
Consensus pattern (39 bp):
GAGGCAGCTGAGAAGGATCGTGCTCTTGAGCGGTCTGAG
Found at i:214247 original size:27 final size:27
Alignment explanation
Indices: 214209--214262 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
214199 TATATAATTT
*
214209 GATGGTATAAGCCAATGCCCCTATGTA
1 GATGGTATAAGCCAATACCCCTATGTA
214236 GATGGTATAAGCCAATACCCCTATGTA
1 GATGGTATAAGCCAATACCCCTATGTA
214263 TATCTTGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (27 bp):
GATGGTATAAGCCAATACCCCTATGTA
Found at i:214660 original size:9 final size:9
Alignment explanation
Indices: 214646--214671 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
214636 GAAATCAGTT
214646 AATTAACCG
1 AATTAACCG
214655 AATTAACCG
1 AATTAACCG
214664 AATTAACC
1 AATTAACC
214672 TTTAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:214797 original size:17 final size:17
Alignment explanation
Indices: 214775--214813 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
214765 TGAATCAAAT
214775 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
214792 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
214809 -AATTA
1 TAATTA
214814 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:215484 original size:21 final size:20
Alignment explanation
Indices: 215438--215503 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
215428 CGCCTCTAGT
* *
215438 GTGCCCACCGTCGCCCCTGG
1 GTGCCCACAGCCGCCCCTGG
* * *
215458 GTGCCCTCTGCCGCCACTGG
1 GTGCCCACAGCCGCCCCTGG
215478 TGTGCCCACAGCCGCCCCTGG
1 -GTGCCCACAGCCGCCCCTGG
215499 GTGCC
1 GTGCC
215504 ATTTGACGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 21 0.55
21 17 0.45
ACGTcount: A:0.06, C:0.47, G:0.30, T:0.17
Consensus pattern (20 bp):
GTGCCCACAGCCGCCCCTGG
Found at i:216036 original size:119 final size:119
Alignment explanation
Indices: 215824--216057 Score: 396
Period size: 119 Copynumber: 2.0 Consensus size: 119
215814 ACTGGGAATA
* * * * *
215824 TTGTATTTTGTGTTTGGTTCGTTTAGCATGAATGTAAGATTATAGTATTTGTTTAAAGGAATAAA
1 TTGTATTTTGTGTTTGGTTCGTTTAGCAGGAATGTAAGACTACAATATTTGGTTAAAGGAATAAA
*
215889 AGATTATTGGAATGTATATTTTATCAAATTGTCCTTCTTATATATTTGTTAATG
66 AGATTATTGGAATGTATATTTTAGCAAATTGTCCTTCTTATATATTTGTTAATG
*
215943 TTGTATTTTGTGTTTGGTTCGTTTAGCAGGAATGTAAGACTACAATGTTTGGTTAAAGGAATAAA
1 TTGTATTTTGTGTTTGGTTCGTTTAGCAGGAATGTAAGACTACAATATTTGGTTAAAGGAATAAA
*
216008 AGATTATTGGAATGTATATTTTAGCAAATTTTCCTTCTTATATATTTGTT
66 AGATTATTGGAATGTATATTTTAGCAAATTGTCCTTCTTATATATTTGTT
216058 TTTTAACAAG
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 107 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (119 bp):
TTGTATTTTGTGTTTGGTTCGTTTAGCAGGAATGTAAGACTACAATATTTGGTTAAAGGAATAAA
AGATTATTGGAATGTATATTTTAGCAAATTGTCCTTCTTATATATTTGTTAATG
Found at i:217117 original size:20 final size:20
Alignment explanation
Indices: 217092--217165 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
217082 ATTGGGAAAA
**
217092 ATCGCAATGCGATACAGACT
1 ATCGCAATGCGATACTTACT
217112 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTTACT
217132 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTTACT
217152 ATCGCAATGCGATA
1 ATCGCAATGCGATA
217166 ATACAAAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGATACTTACT
Found at i:217222 original size:20 final size:20
Alignment explanation
Indices: 217176--217226 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
217166 ATACAAAATT
* *
217176 GCAACGAGATACTGACTTTC
1 GCAACGCGATTCTGACTTTC
217196 GCAACGCGATTCTGACTTTC
1 GCAACGCGATTCTGACTTTC
217216 GCAACGCGATT
1 GCAACGCGATT
217227 TACATAGCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (20 bp):
GCAACGCGATTCTGACTTTC
Found at i:217805 original size:19 final size:19
Alignment explanation
Indices: 217781--217825 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
217771 ACAACGAGAG
*
217781 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
*
217800 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACAAA
217819 AATCGCA
1 AATCGCA
217826 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:217848 original size:19 final size:18
Alignment explanation
Indices: 217826--217980 Score: 64
Period size: 20 Copynumber: 8.9 Consensus size: 18
217816 CAAAATCGCA
217826 TTGCGATTTTCATTTCGTG
1 TTGCGATTTTCATTTCG-G
*
217845 TTGCGA--TTC-TCTC-G
1 TTGCGATTTTCATTTCGG
217859 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCG-G
* *
217878 TTGTGA--TTC-TCTC-G
1 TTGCGATTTTCATTTCGG
**
217892 TTGCGATAGTCATTTCGCG
1 TTGCGATTTTCATTTCG-G
*
217911 TTGCGA--TTC-TCTC-G
1 TTGCGATTTTCATTTCGG
** *
217925 TTGCGATAGTCATTTCCGCA
1 TTGCGATTTTCATTT-CG-G
* *
217945 TTGCGATTCTCATTATCTCG
1 TTGCGATTTTCATT-TC-GG
217965 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
217981 AACCAAAAGA
Statistics
Matches: 101, Mismatches: 17, Indels: 36
0.66 0.11 0.23
Matches are distributed among these distances:
14 20 0.20
16 16 0.16
17 16 0.16
18 1 0.01
19 21 0.21
20 26 0.26
21 1 0.01
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (18 bp):
TTGCGATTTTCATTTCGG
Found at i:217863 original size:14 final size:14
Alignment explanation
Indices: 217844--217931 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
217834 TTCATTTCGT
217844 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
*
217858 GTTGCGATTTTCATTTCGC
1 GTTGCGA--TTC---TCTC
*
217877 GTTGTGATTCTCTC
1 GTTGCGATTCTCTC
*
217891 GTTGCGATAGTCATTTCGC
1 GTTGCGAT--TC---TCTC
217910 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
217924 GTTGCGAT
1 GTTGCGAT
217932 AGTCATTTCC
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 28 0.48
16 5 0.09
17 5 0.09
19 20 0.34
ACGTcount: A:0.10, C:0.23, G:0.24, T:0.43
Consensus pattern (14 bp):
GTTGCGATTCTCTC
Found at i:217868 original size:33 final size:33
Alignment explanation
Indices: 217826--217955 Score: 188
Period size: 33 Copynumber: 3.9 Consensus size: 33
217816 CAAAATCGCA
** *
217826 TTGCGATTTTCATTTCGTGTTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
** *
217859 TTGCGATTTTCATTTCGCGTTGTGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
217892 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
*
217925 TTGCGATAGTCATTTCCGCATTGCGATTCTC
1 TTGCGATAGTCATTT-CGCGTTGCGATTCTC
217956 ATTATCTCGT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
33 76 0.84
34 14 0.16
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
Found at i:217957 original size:20 final size:19
Alignment explanation
Indices: 217854--217980 Score: 69
Period size: 20 Copynumber: 7.1 Consensus size: 19
217844 GTTGCGATTC
*
217854 TCTCGTTGCGATTTTCATT
1 TCTCGTTGCGATTCTCATT
* *
217873 TCGCGTTGTGA-T-TC---
1 TCTCGTTGCGATTCTCATT
**
217887 TCTCGTTGCGATAGTCATT
1 TCTCGTTGCGATTCTCATT
*
217906 TCGCGTTGCGA-T-TC---
1 TCTCGTTGCGATTCTCATT
**
217920 TCTCGTTGCGATAGTCATT
1 TCTCGTTGCGATTCTCATT
217939 TC-CGCATTGCGATTCTCATT
1 TCTCG--TTGCGATTCTCATT
*
217959 ATCTCGTTGCGATTTTCATT
1 -TCTCGTTGCGATTCTCATT
217979 TC
1 TC
217981 AACCAAAAGA
Statistics
Matches: 82, Mismatches: 12, Indels: 28
0.67 0.10 0.23
Matches are distributed among these distances:
14 19 0.23
16 4 0.05
17 4 0.05
18 3 0.04
19 23 0.28
20 25 0.30
21 2 0.02
22 2 0.02
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.44
Consensus pattern (19 bp):
TCTCGTTGCGATTCTCATT
Found at i:219830 original size:94 final size:90
Alignment explanation
Indices: 219648--219832 Score: 291
Period size: 94 Copynumber: 2.0 Consensus size: 90
219638 TTAGATGCTT
219648 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTT
1 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTT
*
219713 GTCTTTTTGTTTGTCTTTTGGTTGA
66 GTCTTTGTGTTTGTCTTTTGGTTGA
* *
219738 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
219803 ATTTTGTCTTTGT-TTTGTCTTTTGGTTGA
62 A-TTTGTCTTTGTGTTTGTCTTTTGGTTGA
219832 A
1 A
219833 AGTTTGAAAT
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
90 35 0.40
92 3 0.03
93 2 0.02
94 37 0.43
95 10 0.11
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47
Consensus pattern (90 bp):
AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTT
GTCTTTGTGTTTGTCTTTTGGTTGA
Found at i:220129 original size:21 final size:21
Alignment explanation
Indices: 220105--220170 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
220095 TCATTCCTCG
220105 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* ** * *
220126 AGAG-CCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
220146 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
220167 AGAG
1 AGAG
220171 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 11, Indels: 5
0.67 0.23 0.10
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.24, C:0.36, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:221360 original size:14 final size:14
Alignment explanation
Indices: 221341--221376 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
221331 ATTGTTTAAT
221341 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
221355 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
221369 TGATTTGT
1 TGATTTGT
221377 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Done.