Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008082.1 Hibiscus syriacus cultivar Beakdansim tig00110584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6025995
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 23 of 28
Found at i:4599704 original size:26 final size:26
Alignment explanation
Indices: 4599668--4599799 Score: 126
Period size: 26 Copynumber: 5.5 Consensus size: 26
4599658 ATGTATTAAG
4599668 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
*
4599694 GCATGAAAGGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4599714 GCATGAACGGATTCCATAACTAAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4599740 GCATAAAAGGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
*
4599760 GCATGAAATGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
4599786 GCATGAAAGGATGC
1 GCATGAAAGGATGC
4599800 ATTAAGGCAT
Statistics
Matches: 82, Mismatches: 12, Indels: 24
0.69 0.10 0.20
Matches are distributed among these distances:
20 26 0.32
21 6 0.07
22 2 0.02
24 2 0.02
25 6 0.07
26 40 0.49
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.20
Consensus pattern (26 bp):
GCATGAAAGGATGCCATAACTAAAAT
Found at i:4599712 original size:46 final size:46
Alignment explanation
Indices: 4599635--4599828 Score: 307
Period size: 46 Copynumber: 4.2 Consensus size: 46
4599625 TAAAATGAAT
* *
4599635 CCATAACTAAAATGCATGAAATGATGTATTAAGGCATGAAAGGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
4599681 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATT
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
4599727 CCATAACTAAAATGCATAAAAGGATGCATTAAGGCATGAAATGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
4599773 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGAATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
4599819 ACACAACTAA
1 CCATAACTAA
4599829 GATTAACGAA
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 135 1.00
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:4599719 original size:20 final size:20
Alignment explanation
Indices: 4599648--4599814 Score: 91
Period size: 20 Copynumber: 7.5 Consensus size: 20
4599638 TAACTAAAAT
* *
4599648 GCATGAAATGATGTATTAAG
1 GCATGAAAGGATGCATTAAG
*
4599668 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
4599694 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* * *
4599714 GCATGAACGGATTCCATAACTAAAAT
1 GCATGAAAGGA-TGCAT---T--AAG
*
4599740 GCATAAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
4599760 GCATGAAATGATGCCATAACTAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
4599786 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
4599806 GCATGAAAG
1 GCATGAAAG
4599815 AATGACACAA
Statistics
Matches: 113, Mismatches: 16, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
20 48 0.42
21 9 0.08
22 3 0.03
24 3 0.03
25 10 0.09
26 40 0.35
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.22
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:4606084 original size:20 final size:20
Alignment explanation
Indices: 4606059--4606108 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
4606049 TAGTATATTA
4606059 GTATCGATACTGATAGAAGG
1 GTATCGATACTGATAGAAGG
4606079 GTATCGATACTGATAGAAGG
1 GTATCGATACTGATAGAAGG
4606099 GTATCGATAC
1 GTATCGATAC
4606109 CATGCAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (20 bp):
GTATCGATACTGATAGAAGG
Found at i:4606661 original size:46 final size:46
Alignment explanation
Indices: 4606609--4606929 Score: 435
Period size: 46 Copynumber: 7.0 Consensus size: 46
4606599 TAAAATGAAT
* * * *
4606609 CCATAACTAAAATGTATGAAAGGATGCATGAATGCCTGAAAGGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * *
4606655 CCATAACTAAAATGCATGAAATGATGTATTAAGGCGTGAAAGGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
*
4606701 TCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * * *
4606747 CCATAACTAAAATGCATAAAATGATGCATTAAGGCATGAACGAATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* *
4606793 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAACGAATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * * * *
4606839 CCATAAGTAAAATACATGAAAGGATGAATTAAGGCATAAAAAGATG
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
* * * *
4606885 TCATAACTAAAATGCATGAAATGATGCTTTAAGACATGAAAGGAT
1 CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGAT
4606930 ACATTAAGAC
Statistics
Matches: 242, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 242 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATG
Found at i:4609683 original size:42 final size:42
Alignment explanation
Indices: 4609624--4609737 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
4609614 AGGGTTCTAC
* *
4609624 GCGGTCTTTCGGGACATATATGTGATCCTTTGAAACATATAT
1 GCGGTCCTTCGGGACATATATGTGGTCCTTTGAAACATATAT
* * *
4609666 GCGGTCCTTCGGGACATATATTTGGTCTTTTGGAACATATAT
1 GCGGTCCTTCGGGACATATATGTGGTCCTTTGAAACATATAT
* *
4609708 GTGGTCCTTCGGGATATATATGTGGTCCTT
1 GCGGTCCTTCGGGACATATATGTGGTCCTT
4609738 CGGGATAATT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.38
Consensus pattern (42 bp):
GCGGTCCTTCGGGACATATATGTGGTCCTTTGAAACATATAT
Found at i:4609744 original size:21 final size:21
Alignment explanation
Indices: 4609626--4609742 Score: 135
Period size: 21 Copynumber: 5.6 Consensus size: 21
4609616 GGTTCTACGC
*
4609626 GGTCTTTCGGGACATATATGT
1 GGTCCTTCGGGACATATATGT
* * ** *
4609647 GATCCTTTGAAACATATATGC
1 GGTCCTTCGGGACATATATGT
*
4609668 GGTCCTTCGGGACATATATTT
1 GGTCCTTCGGGACATATATGT
* * *
4609689 GGTCTTTTGGAACATATATGT
1 GGTCCTTCGGGACATATATGT
*
4609710 GGTCCTTCGGGATATATATGT
1 GGTCCTTCGGGACATATATGT
4609731 GGTCCTTCGGGA
1 GGTCCTTCGGGA
4609743 TAATTCTATG
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (21 bp):
GGTCCTTCGGGACATATATGT
Found at i:4609761 original size:23 final size:23
Alignment explanation
Indices: 4609703--4609770 Score: 86
Period size: 21 Copynumber: 3.0 Consensus size: 23
4609693 TTTTGGAACA
4609703 TATATGTGGTCCTTCGGGAT-A-
1 TATATGTGGTCCTTCGGGATAAT
4609724 TATATGTGGTCCTTCGGGATAAT
1 TATATGTGGTCCTTCGGGATAAT
* * * *
4609747 TCTATGAGGTTCTTCGAGATAAT
1 TATATGTGGTCCTTCGGGATAAT
4609770 T
1 T
4609771 TTATATGGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 20 0.49
22 1 0.02
23 20 0.49
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (23 bp):
TATATGTGGTCCTTCGGGATAAT
Found at i:4617999 original size:18 final size:19
Alignment explanation
Indices: 4617964--4618000 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4617954 TATTCAAAGT
4617964 GTATCGATACCTAAGGGTA
1 GTATCGATACCTAAGGGTA
*
4617983 GTATTGATACC-AAGGGTA
1 GTATCGATACCTAAGGGTA
4618001 TCGATACGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (19 bp):
GTATCGATACCTAAGGGTA
Found at i:4618703 original size:293 final size:295
Alignment explanation
Indices: 4618134--4618727 Score: 1066
Period size: 293 Copynumber: 2.0 Consensus size: 295
4618124 GTACCGATAC
4618134 TACTCAAAGTGAAAATGTAAATTAGGTACTTCTTTTAGCTTAGGTTATTGATGATCAATTCATAA
1 TACTCAAAGTGAAAATGTAAATTAGGTACTTCTTTTAGCTTAGGTTATTGATGATCAATTCATAA
*
4618199 GGTTTTGAATTCTAATATTCGTATCAAATGTACATTGGTGTAGATATCGAACATAAGCAAGTTCC
66 GGTTTAGAATTCTAATATTCGTATCAAATGTACATTGGTGTAGATATCGAACATAAGCAAGTTCC
4618264 GGAATAGTCGAAGAGTTAAGATCGATCGATCGAGAGATAACAATTTATAGGAGTTGATTTGGACT
131 GGAATAGTCGAAGAGTT---ATCGATCGATCGAGAGATAACAATTTATAGGAGTTGATTTGGACT
*
4618329 AAGTGAGACTAAGGTGAGCGACTATTATATTATAATTGGTGTTTTATGGAAGCAATACTTGTGAT
193 AAGTGAGACTAAGGTGAGCGACTATTATATTATAATTGGTGTTTTATGGAAACAATACTTGTGAT
4618394 AAGTCTATTTCCTATGTTTGATTTCATGGTTCTATAGT
258 AAGTCTATTTCCTATGTTTGATTTCATGGTTCTATAGT
*
4618432 TACTCAAAGTGAAAATGTGAATTAGGTACTTCTTTTAGCTT-GGTTATTGATGATCAATTCATAA
1 TACTCAAAGTGAAAATGTAAATTAGGTACTTCTTTTAGCTTAGGTTATTGATGATCAATTCATAA
*
4618496 GGTTTAGAATTCTAATATTCGTATCAAATGTACATTGGTGTAGATATCGAACATAAGCAAGTTCT
66 GGTTTAGAATTCTAATATTCGTATCAAATGTACATTGGTGTAGATATCGAACATAAGCAAGTTCC
*
4618561 GGAATAGTCGAAGAGTT-TTGATCGATCGAGAGATAACAATTTATAGGAGTTGATTTGGACTAAG
131 GGAATAGTCGAAGAGTTATCGATCGATCGAGAGATAACAATTTATAGGAGTTGATTTGGACTAAG
* * * *
4618625 TGAGGCTAAGGTGAGTGCCTATTATATTATAATTGGTGTTTTATGGAAACAATATTTGTGATAAG
196 TGAGACTAAGGTGAGCGACTATTATATTATAATTGGTGTTTTATGGAAACAATACTTGTGATAAG
4618690 TCTATTTCCTATGTTTGATTTCATGGTTCTATAGT
261 TCTATTTCCTATGTTTGATTTCATGGTTCTATAGT
4618725 TAC
1 TAC
4618728 AAGCATTTAG
Statistics
Matches: 287, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
293 144 0.50
297 103 0.36
298 40 0.14
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (295 bp):
TACTCAAAGTGAAAATGTAAATTAGGTACTTCTTTTAGCTTAGGTTATTGATGATCAATTCATAA
GGTTTAGAATTCTAATATTCGTATCAAATGTACATTGGTGTAGATATCGAACATAAGCAAGTTCC
GGAATAGTCGAAGAGTTATCGATCGATCGAGAGATAACAATTTATAGGAGTTGATTTGGACTAAG
TGAGACTAAGGTGAGCGACTATTATATTATAATTGGTGTTTTATGGAAACAATACTTGTGATAAG
TCTATTTCCTATGTTTGATTTCATGGTTCTATAGT
Found at i:4619085 original size:21 final size:21
Alignment explanation
Indices: 4619052--4619140 Score: 81
Period size: 21 Copynumber: 4.2 Consensus size: 21
4619042 TTCTACGCGG
4619052 TCCTTCGGGACATATATGTGA
1 TCCTTCGGGACATATATGTGA
* *
4619073 TCCTT-GGGAACATATATGCGG
1 TCCTTCGGG-ACATATATGTGA
** *
4619094 TATTTCGGGACATATATTTGA
1 TCCTTCGGGACATATATGTGA
** * *
4619115 TCCTTTTGAACATATATGTGG
1 TCCTTCGGGACATATATGTGA
4619136 TCCTT
1 TCCTT
4619141 AAGGATAATT
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
20 3 0.06
21 46 0.88
22 3 0.06
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (21 bp):
TCCTTCGGGACATATATGTGA
Found at i:4619159 original size:23 final size:23
Alignment explanation
Indices: 4619132--4619196 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
4619122 GAACATATAT
*
4619132 GTGGTCCTTAAGG-ATAATTCTAC
1 GTGGTCCTT-AGGTACAATTCTAC
*
4619155 GTGGTCCTTCGGTACAATTCTAC
1 GTGGTCCTTAGGTACAATTCTAC
* * *
4619178 GAGGTCCTTCGGGACAATT
1 GTGGTCCTTAGGTACAATT
4619197 TTATATGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
22 2 0.05
23 35 0.95
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (23 bp):
GTGGTCCTTAGGTACAATTCTAC
Found at i:4626410 original size:12 final size:12
Alignment explanation
Indices: 4626393--4626421 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
4626383 TTGTTGTGCT
4626393 TGCTCCTCGGGC
1 TGCTCCTCGGGC
4626405 TGCTCCTCGGGC
1 TGCTCCTCGGGC
4626417 TGCTC
1 TGCTC
4626422 AGGCTCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.41, G:0.31, T:0.28
Consensus pattern (12 bp):
TGCTCCTCGGGC
Found at i:4639739 original size:152 final size:153
Alignment explanation
Indices: 4639450--4639755 Score: 555
Period size: 152 Copynumber: 2.0 Consensus size: 153
4639440 CTTGACCTCC
4639450 ATGGTGCTAAGGATGGATCCAAGCTTTAGAGTCTCACTCTCCCCCCATCTTTCTCCTTGATGGCC
1 ATGGTGCTAAGGATGGATCCAAGCTTTAGAGTCTCACTCTCCCCCCATCTTTCTCCTTGATGGCC
4639515 GAGAGTTTATTCTTCTGCGGACAGTCCCTCGCCAATGCCCTTGGCCCTTGCAGTTGTAACACTGG
66 GAGAGTTTATTCTTCTGCGGACAGTCCCTCGCCAATGCCCTTGGCCCTTGCAGTTGTAACACTGG
4639580 ATAATTTGCTTGTCTTTCTATCCG
131 ATAATTTGCTTGTC-TTCTATCCG
*
4639604 ATGGTGCTAAGGATGGATCCAAGCTTTAGAGTCTCACTC-CTCCCC-TCTTTCTCCTTGATGGCC
1 ATGGTGCTAAGGATGGATCCAAGCTTTAGAGTCTCACTCTCCCCCCATCTTTCTCCTTGATGGCC
*
4639667 GAGAGTTTCTTCTTCTGCGGACAGTCCCTCGCCAAATGCCCTTGGCCCTTGCAGTTGTAACACTG
66 GAGAGTTTATTCTTCTGCGGACAGTCCCTCGCC-AATGCCCTTGGCCCTTGCAGTTGTAACACTG
4639732 GAT-ATTTGCTTGTCTTCTATCCG
130 GATAATTTGCTTGTCTTCTATCCG
4639755 A
1 A
4639756 GTGCTTACCA
Statistics
Matches: 149, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
151 10 0.07
152 61 0.41
153 39 0.26
154 39 0.26
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (153 bp):
ATGGTGCTAAGGATGGATCCAAGCTTTAGAGTCTCACTCTCCCCCCATCTTTCTCCTTGATGGCC
GAGAGTTTATTCTTCTGCGGACAGTCCCTCGCCAATGCCCTTGGCCCTTGCAGTTGTAACACTGG
ATAATTTGCTTGTCTTCTATCCG
Found at i:4641574 original size:22 final size:22
Alignment explanation
Indices: 4641542--4641597 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
4641532 AGCATTAAAC
4641542 GAACATAAATGAGTTTGTTCAT
1 GAACATAAATGAGTTTGTTCAT
*
4641564 GAATATAAATGAGTTTGTTCAT
1 GAACATAAATGAGTTTGTTCAT
4641586 GAACATAAATGA
1 GAACATAAATGA
4641598 ACTGAACATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (22 bp):
GAACATAAATGAGTTTGTTCAT
Found at i:4645074 original size:27 final size:26
Alignment explanation
Indices: 4645052--4645102 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4645042 TGATTTTATT
4645052 CTAGGG-GCAAACTTATAAAATTTTA
1 CTAGGGAGCAAACTTATAAAATTTTA
* *
4645077 GTGGGGAGCAAACTTATAAAATTTTA
1 CTAGGGAGCAAACTTATAAAATTTTA
4645103 GAGGACGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (26 bp):
CTAGGGAGCAAACTTATAAAATTTTA
Found at i:4646574 original size:9 final size:9
Alignment explanation
Indices: 4646560--4646598 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
4646550 GGCATAAGAT
4646560 GAAGATGAA
1 GAAGATGAA
4646569 GAAGATGAA
1 GAAGATGAA
* *
4646578 AAAAATGAA
1 GAAGATGAA
4646587 GAAGATGAA
1 GAAGATGAA
4646596 GAA
1 GAA
4646599 ATGGTATACA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.10
Consensus pattern (9 bp):
GAAGATGAA
Found at i:4654858 original size:25 final size:25
Alignment explanation
Indices: 4654829--4654881 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
4654819 GTGCGGCGAC
4654829 CAGACGACGGCCGGTGGCGGATATG
1 CAGACGACGGCCGGTGGCGGATATG
* * *
4654854 CAGACGGCGGTCGGTGGCGGATCTG
1 CAGACGACGGCCGGTGGCGGATATG
4654879 CAG
1 CAG
4654882 CCAGCAGTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.45, T:0.13
Consensus pattern (25 bp):
CAGACGACGGCCGGTGGCGGATATG
Found at i:4655467 original size:29 final size:29
Alignment explanation
Indices: 4655429--4655489 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
4655419 GGTCCTTGTA
*
4655429 TTTATGTTTAT-TTTATTTTATTTTTCATTT
1 TTTATGTTTATGTTTATTTT-TTTTAC-TTT
*
4655459 TTTAT-TTTATGTTTGTTTTTTTTACTTT
1 TTTATGTTTATGTTTATTTTTTTTACTTT
4655487 TTT
1 TTT
4655490 GTTATTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 6 0.21
29 10 0.36
30 12 0.43
ACGTcount: A:0.13, C:0.03, G:0.05, T:0.79
Consensus pattern (29 bp):
TTTATGTTTATGTTTATTTTTTTTACTTT
Found at i:4655478 original size:19 final size:19
Alignment explanation
Indices: 4655433--4655480 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
4655423 CTTGTATTTA
*
4655433 TGTTTATTTTATTTTATTTT
1 TGTTT-TTTTATTTTATGTT
**
4655453 TCATTTTTTATTTTATGTT
1 TGTTTTTTTATTTTATGTT
4655472 TGTTTTTTT
1 TGTTTTTTT
4655481 TACTTTTTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.12, C:0.02, G:0.06, T:0.79
Consensus pattern (19 bp):
TGTTTTTTTATTTTATGTT
Found at i:4655497 original size:20 final size:20
Alignment explanation
Indices: 4655429--4655497 Score: 54
Period size: 20 Copynumber: 3.4 Consensus size: 20
4655419 GGTCCTTGTA
4655429 TTTATGTTTATTTTATTTTAT-
1 TTTAT-TTT-TTTTATTTTATG
*
4655450 TTT-TCATTTTTTATTTTATG
1 TTTAT-TTTTTTTATTTTATG
* *
4655470 TTTGTTTTTTTTACTTTTTTG
1 TTTATTTTTTTTA-TTTTATG
4655491 -TTATTTT
1 TTTATTTT
4655498 AATTAAGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
19 11 0.28
20 19 0.47
21 10 0.25
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.78
Consensus pattern (20 bp):
TTTATTTTTTTTATTTTATG
Found at i:4661068 original size:57 final size:57
Alignment explanation
Indices: 4661006--4661234 Score: 272
Period size: 57 Copynumber: 4.1 Consensus size: 57
4660996 CTTAAACAAC
* * * *
4661006 ATGATGTTTTTAAAAGAATTTTTAAAGAAGTTAAGCCTGACTTTCAGGGGTTTCTTG
1 ATGATGATTTCAAAAGAATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTG
* * * *
4661063 ATGATGATTTCCAATGAATTTTTAAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTG
1 ATGATGATTTCAAAAGAATTTTT-AAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTG
* * *
4661121 ATG-T--TTTCAAATG-ATTTTT-TAGAAACTAAGCCTGATTTTCAGGGGTTTCTTG
1 ATGATGATTTCAAAAGAATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTG
* * *
4661173 ATGATGATTTCCAAAGAATTTTTAAAGAAGCTAAGCCTAATATTT-AGGGATTTCTTG
1 ATGATGATTTCAAAAGAATTTTTAAAGAAGCTAAGCCTGAT-TTTCAGGGGTTTCTTG
4661230 ATGAT
1 ATGAT
4661235 AACTGAAAAT
Statistics
Matches: 146, Mismatches: 19, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
52 32 0.22
53 1 0.01
54 6 0.04
55 15 0.10
56 6 0.04
57 50 0.34
58 36 0.25
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (57 bp):
ATGATGATTTCAAAAGAATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTG
Found at i:4661569 original size:40 final size:39
Alignment explanation
Indices: 4661479--4661614 Score: 184
Period size: 40 Copynumber: 3.5 Consensus size: 39
4661469 AGGGATCAAC
* *
4661479 ATCTCGTTTGAGATAGTTTCACTTAAAACAGAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTTGAAACAGAAGATTTT
* *
4661518 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTTT
1 ATCTCGCTTGAGATAGTTTCACTTGAAACAGAAGA-TTTT
* *
4661558 ATCTCGCTTGAGATAATTTCAATTGAAACAGAAGA-TTT
1 ATCTCGCTTGAGATAGTTTCACTTGAAACAGAAGATTTT
* *
4661596 ATCTCACTTGAGATTGTTT
1 ATCTCGCTTGAGATAGTTT
4661615 TTCTTAAAAC
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 19 0.22
39 31 0.36
40 35 0.41
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (39 bp):
ATCTCGCTTGAGATAGTTTCACTTGAAACAGAAGATTTT
Found at i:4661756 original size:60 final size:59
Alignment explanation
Indices: 4661641--4661763 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 59
4661631 CGCCTCACTT
*
4661641 GAGGGATTAACATTTCCTTTGCTAGATTCACAACACTTCAAATCAACGACACCCCACCA
1 GAGGGATTAACATTTCCTTTGCTAGATTCACAACACTTCAAATCAACGAAACCCCACCA
* * * * *
4661700 GAGGGGTTAACATTTCCTATTGTTCGATTCATAACACTTCGAATC-A-GAAATGCCCCACCA
1 GAGGGATTAACATTTCCT-TTGCTAGATTCACAACACTTCAAATCAACGAAA--CCCCACCA
4661760 GAGG
1 GAGG
4661764 AAATAAAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
58 3 0.05
59 18 0.33
60 34 0.62
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (59 bp):
GAGGGATTAACATTTCCTTTGCTAGATTCACAACACTTCAAATCAACGAAACCCCACCA
Found at i:4661867 original size:39 final size:39
Alignment explanation
Indices: 4661824--4661938 Score: 194
Period size: 39 Copynumber: 2.9 Consensus size: 39
4661814 GAGGGATCAA
*
4661824 TATCTCGCTTGAGATATTTTCACTCGAAAAAGAAGATTT
1 TATCTCGCTTGAGATAGTTTCACTCGAAAAAGAAGATTT
*
4661863 TATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
1 TATCTCGCTTGAGATAGTTTCACTCGAAAAAGAAGATTT
* *
4661902 TATCTCACTTGAGATAGTTTCACTCGAAATAGAAGAT
1 TATCTCGCTTGAGATAGTTTCACTCGAAAAAGAAGAT
4661939 AGTTTCACTC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (39 bp):
TATCTCGCTTGAGATAGTTTCACTCGAAAAAGAAGATTT
Found at i:4661899 original size:22 final size:22
Alignment explanation
Indices: 4661874--4661960 Score: 80
Period size: 22 Copynumber: 4.2 Consensus size: 22
4661864 ATCTCGCTTG
4661874 AGATAGTTTCACTCGAAACAGA
1 AGATAGTTTCACTCGAAACAGA
*
4661896 AGAT--TTT-ATCTC---ACTTG-
1 AGATAGTTTCA-CTCGAAAC-AGA
*
4661913 AGATAGTTTCACTCGAAATAGA
1 AGATAGTTTCACTCGAAACAGA
*
4661935 AGATAGTTTCACTCAAAACAGA
1 AGATAGTTTCACTCGAAACAGA
4661957 AGAT
1 AGAT
4661961 TTTATCTCGT
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
17 6 0.12
18 1 0.02
19 7 0.14
20 7 0.14
21 1 0.02
22 29 0.57
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (22 bp):
AGATAGTTTCACTCGAAACAGA
Found at i:4661960 original size:100 final size:101
Alignment explanation
Indices: 4661835--4662039 Score: 317
Period size: 100 Copynumber: 2.0 Consensus size: 101
4661825 ATCTCGCTTG
* * *
4661835 AGATATTTTCACTCGAAAAAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGA-
1 AGATAGTTTCACTCGAAAAAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCAAAACAAAAGAT
4661899 TTTTATC-TCACTTGAGATAGTTTCACTCGAAATAGA
66 TTTTA-CGTCACTTGAGATAGTTTCACTCGAAATAGA
*
4661935 AGATAGTTTCACTC-AAAACAGAAGATTTTATCTCGTTTGAGATAGTTTCACTCAAAACAAAAGA
1 AGATAGTTTCACTCGAAAA-AGAAGATTTTATCTCGCTTGAGATAGTTTCACTCAAAACAAAAGA
* *
4661999 TTTTTACGTCGCTTGAGATAGTTTCACTTGAAATAGA
65 TTTTTACGTCACTTGAGATAGTTTCACTCGAAATAGA
4662036 AGAT
1 AGAT
4662040 TTATCTCTCT
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
99 4 0.04
100 56 0.58
101 36 0.38
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (101 bp):
AGATAGTTTCACTCGAAAAAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCAAAACAAAAGAT
TTTTACGTCACTTGAGATAGTTTCACTCGAAATAGA
Found at i:4661978 original size:39 final size:39
Alignment explanation
Indices: 4661935--4662055 Score: 149
Period size: 39 Copynumber: 3.1 Consensus size: 39
4661925 TCGAAATAGA
4661935 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCGTTTG
1 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCGTTTG
* *
4661974 AGATAGTTTCACTCAAAACAAAAGATTTT-TACGTCGCTTG
1 AGATAGTTTCACTCAAAACAGAAGATTTTAT-C-TCGTTTG
** *
4662014 AGATAGTTTCACTTGAAATAGAAGA-TTTATCTC-TCTTG
1 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCGT-TTG
4662052 AGAT
1 AGAT
4662056 TATTTTTCTT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
38 10 0.14
39 33 0.46
40 28 0.39
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (39 bp):
AGATAGTTTCACTCAAAACAGAAGATTTTATCTCGTTTG
Found at i:4661999 original size:61 final size:61
Alignment explanation
Indices: 4661874--4661999 Score: 198
Period size: 61 Copynumber: 2.1 Consensus size: 61
4661864 ATCTCGCTTG
* * * *
4661874 AGATAGTTTCACTCGAAACAGAAGATTTTATCTCACTTGAGATAGTTTCACTCGAAATAGA
1 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCACTTGAGATAGTTTCACTCAAAACAAA
**
4661935 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCGTTTGAGATAGTTTCACTCAAAACAAA
1 AGATAGTTTCACTCAAAACAGAAGATTTTATCTCACTTGAGATAGTTTCACTCAAAACAAA
4661996 AGAT
1 AGAT
4662000 TTTTACGTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (61 bp):
AGATAGTTTCACTCAAAACAGAAGATTTTATCTCACTTGAGATAGTTTCACTCAAAACAAA
Found at i:4663858 original size:18 final size:19
Alignment explanation
Indices: 4663827--4663865 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
4663817 TTATTTTTCA
4663827 TTTTATTTTGTTTGTT-TT
1 TTTTATTTTGTTTGTTATT
4663845 TTTTACTTTT-TTTGTTATT
1 TTTTA-TTTTGTTTGTTATT
4663864 TT
1 TT
4663866 AAATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.08, C:0.03, G:0.08, T:0.82
Consensus pattern (19 bp):
TTTTATTTTGTTTGTTATT
Found at i:4678966 original size:28 final size:28
Alignment explanation
Indices: 4678935--4679001 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
4678925 TTGATTTTTT
* *
4678935 TTAAATATATGTATGAATTTGTGTTTAG
1 TTAAATATATGTATGAATTTGAGTTTAA
*
4678963 TTAAATATGTGTATGAATTTGAGTTTAA
1 TTAAATATATGTATGAATTTGAGTTTAA
4678991 TTAAATATATG
1 TTAAATATATG
4679002 GTTATTGGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (28 bp):
TTAAATATATGTATGAATTTGAGTTTAA
Found at i:4682367 original size:42 final size:42
Alignment explanation
Indices: 4682319--4682417 Score: 153
Period size: 42 Copynumber: 2.4 Consensus size: 42
4682309 AGTTTATTTC
* * *
4682319 ATTACCCTTGTTTTTCCTTTGTCATAATTTCTTTAGAATTCT
1 ATTACCCTTGTTTTTCCATTGTCATAATTTCATTAGAATTAT
*
4682361 ATTACCCTTGTTTTTCCATTGTCCTAATTTCATTAGAATTAT
1 ATTACCCTTGTTTTTCCATTGTCATAATTTCATTAGAATTAT
*
4682403 ATTACCCTTTTTTTT
1 ATTACCCTTGTTTTT
4682418 ATTGTCTTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.20, C:0.19, G:0.06, T:0.55
Consensus pattern (42 bp):
ATTACCCTTGTTTTTCCATTGTCATAATTTCATTAGAATTAT
Found at i:4684323 original size:13 final size:13
Alignment explanation
Indices: 4684305--4684330 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4684295 AGCTTATTAC
4684305 TTTTAATCATTTA
1 TTTTAATCATTTA
4684318 TTTTAATCATTTA
1 TTTTAATCATTTA
4684331 AAAATAGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTAATCATTTA
Found at i:4684424 original size:20 final size:22
Alignment explanation
Indices: 4684385--4684428 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 22
4684375 ATATAAAATA
4684385 TATTTGTATTATAATTATATTTT
1 TATTTGTATTAT-ATTATATTTT
4684408 TATTTGTATT-T-TTATATTTT
1 TATTTGTATTATATTATATTTT
4684428 T
1 T
4684429 TTATAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
22 1 0.05
23 10 0.48
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (22 bp):
TATTTGTATTATATTATATTTT
Found at i:4687753 original size:2 final size:2
Alignment explanation
Indices: 4687746--4687801 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
4687736 ATTAAACACA
4687746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4687788 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
4687802 TGGAGTAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4688054 original size:55 final size:55
Alignment explanation
Indices: 4687995--4688200 Score: 256
Period size: 55 Copynumber: 3.7 Consensus size: 55
4687985 CTTCGGGAAG
* * * *
4687995 CGTGTCCT-CTCCCTATTCTTTTAGAGAGTATAAGACTCGAATGATCTTCGATC-AT
1 CGTGT-CTGCTCCCTATTCGTTCAGAGAGTATAAGACTCGAATAATCTTC-AACAAT
* *
4688050 CGTGTCTGCTCTCTATTCGTTCAGAGAATATAAGACTCGAATAATCTTCAACAAT
1 CGTGTCTGCTCCCTATTCGTTCAGAGAGTATAAGACTCGAATAATCTTCAACAAT
* * *
4688105 CGTGTCTGCTCCCTATTTC-TTTAGAGAGTATAAGATTCGAACAATCTTCAACAAT
1 CGTGTCTGCTCCCTA-TTCGTTCAGAGAGTATAAGACTCGAATAATCTTCAACAAT
* * *
4688160 CATGTCTACTCTCTATTCGTTCAGAGAGTATAAGACTCGAA
1 CGTGTCTGCTCCCTATTCGTTCAGAGAGTATAAGACTCGAA
4688201 CAACCTTCTG
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
54 7 0.05
55 121 0.92
56 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (55 bp):
CGTGTCTGCTCCCTATTCGTTCAGAGAGTATAAGACTCGAATAATCTTCAACAAT
Found at i:4688166 original size:110 final size:110
Alignment explanation
Indices: 4687995--4688200 Score: 301
Period size: 110 Copynumber: 1.9 Consensus size: 110
4687985 CTTCGGGAAG
** * * *
4687995 CGTGTCCTCTCCCTATTCTTTTAGAGAGTATAAGACTCGAATGATCTTCGATCATCGTGTCTGCT
1 CGTGTCCTCTCCCTATTCTTTTAGAGAGTATAAGACTCGAACAATCTTCGAACATCATGTCTACT
4688060 CTCTATTCGTTCAGAGAATATAAGACTCGAATAATCTTCAACAAT
66 CTCTATTCGTTCAGAGAATATAAGACTCGAATAATCTTCAACAAT
*
4688105 CGTGT-CTGCTCCCTATT-TCTTTAGAGAGTATAAGATTCGAACAATCTTC-AACAATCATGTCT
1 CGTGTCCT-CTCCCTATTCT-TTTAGAGAGTATAAGACTCGAACAATCTTCGAAC-ATCATGTCT
*
4688167 ACTCTCTATTCGTTCAGAGAGTATAAGACTCGAA
63 ACTCTCTATTCGTTCAGAGAATATAAGACTCGAA
4688201 CAACCTTCTG
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
109 5 0.06
110 81 0.94
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (110 bp):
CGTGTCCTCTCCCTATTCTTTTAGAGAGTATAAGACTCGAACAATCTTCGAACATCATGTCTACT
CTCTATTCGTTCAGAGAATATAAGACTCGAATAATCTTCAACAAT
Found at i:4688226 original size:110 final size:110
Alignment explanation
Indices: 4688003--4688247 Score: 298
Period size: 110 Copynumber: 2.2 Consensus size: 110
4687993 AGCGTGTCCT
** * * *
4688003 CTCCCTA-TTCTTTTAGAGAGTATAAGACTCGAATGATCTTCGATCATCGTGTCTGCTCTCTATT
1 CTCCCTATTTC-TTTAGAGAGTATAAGACTCGAACAATCTTCGAACATCATGTCTACTCTCTATT
* * * *
4688067 CGTTCAGAGAATATAAGACTCGAATAATCTTCAACAATCGTGTCTG
65 CGTTCAGAGAATATAAGACTCGAACAACCTTCAACAAACGGGTCTG
*
4688113 CTCCCTATTTCTTTAGAGAGTATAAGATTCGAACAATCTTC-AACAATCATGTCTACTCTCTATT
1 CTCCCTATTTCTTTAGAGAGTATAAGACTCGAACAATCTTCGAAC-ATCATGTCTACTCTCTATT
* ***
4688177 CGTTCAGAGAGTATAAGACTCGAACAACCTTCTGTAAACAGGGTC-G
65 CGTTCAGAGAATATAAGACTCGAACAACCTTCAACAAAC-GGGTCTG
*
4688223 CTCCCTATTCCTTTCAGAGAGTATA
1 CTCCCTATTTCTTT-AGAGAGTATA
4688248 GAACTTGAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
109 2 0.02
110 97 0.84
111 17 0.15
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (110 bp):
CTCCCTATTTCTTTAGAGAGTATAAGACTCGAACAATCTTCGAACATCATGTCTACTCTCTATTC
GTTCAGAGAATATAAGACTCGAACAACCTTCAACAAACGGGTCTG
Found at i:4688330 original size:54 final size:54
Alignment explanation
Indices: 4688272--4689290 Score: 1454
Period size: 54 Copynumber: 18.9 Consensus size: 54
4688262 TTCTGAAAAA
* * *
4688272 GGGTTTGCTCCGTCTTTCTTTAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* ** *
4688326 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAAAACTTAAAAAATCTTCTTCTTAT
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAAC-TCGAAAATCTTCTTCTTAC
*
4688381 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* *
4688435 GGGTTCGCTCACTCTTTCTTCAGAAAGTATAGAACTC-AAGAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAA-AATCTTCTTCTTAC
* * *
4688489 GGGTTCGCTCCCTTTTTCTTCAGGGAGTATAGAACTCAAAAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
*
4688543 GGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCGAAAATCTT-TTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * * **
4688596 GGGTTCGCTCCCTCTTTTTTTCAGGAAGTATAGAATTCGAAAATATTCTTCAAAC
1 GGGTTCGCTCCCTC-TTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
4688651 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * * **
4688705 AGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCGAACATCTTCTTCAAAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* *
4688759 GGGTTCGATCCCTCTTTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
** *
4688813 GGGTTTTCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
*
4688867 GGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCGAAAATCTTCTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * * *
4688921 GGGTTCGCTCACTCTTTCTTCAGGGAGTATAGAACTCAAAAATCTTTTTCTTAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
**
4688975 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCAAAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* **
4689029 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCAAAAATCTTCTTCAAAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * * * * **
4689083 GGGTTCACTCCCTCTTTCTTTAGGAAGTATATAACTCAAAAATCTTTTTCAAAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * ** *
4689137 GGGTTCGATCCCTCTTTCTTTAGGAAGTATAGAACTCGAGGATCTTCTTCTTAG
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
* * * * **
4689191 GGGTTCGCTTCCTCTTTCTTTACGAAGTATGGAACTCGAAAA---TCTTCAAAC
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
*
4689242 GGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCGAAAATCTTCTT
1 GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTT
4689291 TTGCGCGAAG
Statistics
Matches: 868, Mismatches: 89, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
51 43 0.05
53 22 0.03
54 732 0.84
55 71 0.08
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC
Found at i:4692447 original size:17 final size:17
Alignment explanation
Indices: 4692417--4692504 Score: 76
Period size: 17 Copynumber: 5.1 Consensus size: 17
4692407 GTTTGATCGA
4692417 TTTTCTTTCATTCTCTTT-
1 TTTTCTTT--TTCTCTTTC
4692435 TTTTCATTTTTCTCATTTCC
1 TTTTC-TTTTTCTC-TTT-C
**
4692455 AATT-TTTTTCT-TTTC
1 TTTTCTTTTTCTCTTTC
4692470 TTTTCTTTCTTCT-TTTC
1 TTTTCTTT-TTCTCTTTC
4692487 TTTTCTTTTTCTCTTTC
1 TTTTCTTTTTCTCTTTC
4692504 T
1 T
4692505 ACATTTCTCT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
15 3 0.05
16 10 0.17
17 26 0.44
18 15 0.25
19 3 0.05
20 2 0.03
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCTTTTTCTCTTTC
Found at i:4692470 original size:5 final size:5
Alignment explanation
Indices: 4692460--4692495 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
4692450 TTTCCAATTT
4692460 TTTTC TTTTC TTTTC TTTCTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC -TT-TTC TTTTC TTTTC TTTT
4692496 TCTCTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 22 0.76
6 4 0.14
7 3 0.10
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:4692482 original size:12 final size:12
Alignment explanation
Indices: 4692467--4692518 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
4692457 TTTTTTTCTT
4692467 TTCTTTTCTTTC
1 TTCTTTTCTTTC
4692479 TTCTTTTCTTTTC
1 TTCTTTTC-TTTC
4692492 TT-TTTCTCTTTC
1 TTCTTT-TCTTTC
* *
4692504 TACATTTCTCTTC
1 TTCTTTTCT-TTC
4692517 TT
1 TT
4692519 TCTCTTCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 19 0.58
13 14 0.42
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTTTTCTTTC
Found at i:4692504 original size:22 final size:22
Alignment explanation
Indices: 4692460--4692501 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4692450 TTTCCAATTT
*
4692460 TTTTCTTTTCTTTTCTTTCTTC
1 TTTTCTTTTCTTTTCTCTCTTC
4692482 TTTTCTTTTCTTTT-TCTCTT
1 TTTTCTTTTCTTTTCTCTCTT
4692502 TCTACATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTCTTTTCTTTTCTCTCTTC
Found at i:4692504 original size:25 final size:25
Alignment explanation
Indices: 4692420--4692503 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
4692410 TGATCGATTT
4692420 TCTTTCATTCTCTTTTTTTCATTTTTC
1 TCTTTCATTCT-TTTTTTTC-TTTTTC
*
4692447 TCATTTCCAATT-TTTTTCTTT-TCTTT-
1 TC-TTT-C-ATTCTTTTT-TTTCTTTTTC
4692473 TCTTTC-TTCTTTTCTTTTCTTTTTC
1 TCTTTCATTCTTTT-TTTTCTTTTTC
4692498 TCTTTC
1 TCTTTC
4692504 TACATTTCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
22 2 0.04
23 7 0.15
24 6 0.13
25 9 0.19
26 2 0.04
27 6 0.13
28 7 0.15
29 5 0.11
30 3 0.06
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (25 bp):
TCTTTCATTCTTTTTTTTCTTTTTC
Found at i:4692511 original size:25 final size:26
Alignment explanation
Indices: 4692435--4692512 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 26
4692425 CATTCTCTTT
*
4692435 TTTTCATTTTTCTCATTTCCA-ATTT-
1 TTTTCATTTTTCTC-TTTCTACATTTC
* * * *
4692460 TTTTCTTTTCTTTTCTTTCTTCTTTTC
1 TTTTCATTT-TTCTCTTTCTACATTTC
4692487 TTTTC-TTTTTCTCTTTCTACATTTC
1 TTTTCATTTTTCTCTTTCTACATTTC
4692512 T
1 T
4692513 CTTCTTTCTC
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
25 27 0.64
26 10 0.24
27 5 0.12
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTTCATTTTTCTCTTTCTACATTTC
Found at i:4693218 original size:20 final size:21
Alignment explanation
Indices: 4693193--4693239 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
4693183 AAAATCCTTT
**
4693193 CAAAAAGTTGA-GGAAAACAA
1 CAAAAAGTTGATAAAAAACAA
4693213 CAAAAAGTTGATAAAAAACAA
1 CAAAAAGTTGATAAAAAACAA
4693234 CAAAAA
1 CAAAAA
4693240 TATTTTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.66, C:0.11, G:0.13, T:0.11
Consensus pattern (21 bp):
CAAAAAGTTGATAAAAAACAA
Found at i:4695104 original size:21 final size:21
Alignment explanation
Indices: 4695056--4695134 Score: 99
Period size: 22 Copynumber: 3.7 Consensus size: 21
4695046 TCCAATGTGA
4695056 AATGGTCTTCATGTCTTTATG
1 AATGGTCTTCATGTCTTTATG
4695077 AAATGGTCTTCATGTCTTTATG
1 -AATGGTCTTCATGTCTTTATG
*
4695099 AATGGTCCTCTCA--TCCTTATG
1 AATGGT-CT-TCATGTCTTTATG
*
4695120 AATGGTCTTCTTGTC
1 AATGGTCTTCATGTC
4695135 CTCTGTATGA
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.04
20 2 0.04
21 21 0.41
22 23 0.45
23 3 0.06
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (21 bp):
AATGGTCTTCATGTCTTTATG
Found at i:4695136 original size:21 final size:21
Alignment explanation
Indices: 4695056--4695136 Score: 94
Period size: 21 Copynumber: 3.8 Consensus size: 21
4695046 TCCAATGTGA
*
4695056 AATGGTCTTCATGTCTTTATG
1 AATGGTCTTCATGTCCTTATG
*
4695077 AAATGGTCTTCATGTCTTTATG
1 -AATGGTCTTCATGTCCTTATG
4695099 AATGGTCCTCTCA--TCCTTATG
1 AATGGT-CT-TCATGTCCTTATG
*
4695120 AATGGTCTTCTTGTCCT
1 AATGGTCTTCATGTCCT
4695137 CTGTATGACT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.04
20 2 0.04
21 23 0.43
22 23 0.43
23 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.17, T:0.44
Consensus pattern (21 bp):
AATGGTCTTCATGTCCTTATG
Found at i:4698869 original size:20 final size:20
Alignment explanation
Indices: 4698844--4698882 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4698834 TATTCTCTTA
4698844 ACATACACACATATATATAT
1 ACATACACACATATATATAT
**
4698864 ACATACTTACATATATATA
1 ACATACACACATATATATA
4698883 CATACATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATACACACATATATATAT
Found at i:4698957 original size:2 final size:2
Alignment explanation
Indices: 4698952--4699014 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
4698942 AACACACACA
4698952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4698994 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
4699015 ATGGAGTAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4699490 original size:83 final size:84
Alignment explanation
Indices: 4699340--4699512 Score: 285
Period size: 83 Copynumber: 2.1 Consensus size: 84
4699330 GTAAAACATA
* * *
4699340 TAAAAGCATGCATAATAAAATTCTAGATTATAAAAATAATCTTCAACTTGTAGTTGCCAGGTTTG
1 TAAAAACATGCATAATAAAATTCTAGATTACAAAAATAATCTTCAACTTGTAGTTGCCAGGTGTG
* *
4699405 ACGGTTTCAATTCTTTAAT
66 ACGGTTTCAAATCTTCAAT
*
4699424 TAAAAACAT-CATAATAAAATTCTAGATTACAAAAATAATCTTCATCTTGTAGTTGCCAGGTGTG
1 TAAAAACATGCATAATAAAATTCTAGATTACAAAAATAATCTTCAACTTGTAGTTGCCAGGTGTG
4699488 ACGGTTTCAAATCTTCAAT
66 ACGGTTTCAAATCTTCAAT
4699507 TAAAAA
1 TAAAAA
4699513 ATCCCAATTC
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 75 0.90
84 8 0.10
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (84 bp):
TAAAAACATGCATAATAAAATTCTAGATTACAAAAATAATCTTCAACTTGTAGTTGCCAGGTGTG
ACGGTTTCAAATCTTCAAT
Found at i:4701799 original size:35 final size:35
Alignment explanation
Indices: 4701760--4701829 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
4701750 AAAACAATCC
4701760 TCAATT-TCATTCTAAACCCCAAATTCCAAAATAAT
1 TCAATTAT-ATTCTAAACCCCAAATTCCAAAATAAT
4701795 TCAATTATATTCTAAACCCCAAATTCCAAAATAAT
1 TCAATTATATTCTAAACCCCAAATTCCAAAATAAT
4701830 CAAAATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.31
Consensus pattern (35 bp):
TCAATTATATTCTAAACCCCAAATTCCAAAATAAT
Found at i:4706298 original size:175 final size:176
Alignment explanation
Indices: 4706024--4706390 Score: 431
Period size: 175 Copynumber: 2.1 Consensus size: 176
4706014 TTTTATATGA
* * * *
4706024 AAAATAAATTGCTAAATTTATTTTCTTAGGAATGTTAAATGATTCTATCTTTTAAACGGAAACAA
1 AAAATAAATTGTTAAATTTATTTTCTTAGGAATCTTAAACGATTCTATCTTTTAAACAGAAACAA
* * * *
4706089 ATTGTTAATTTATTTTCTTCCAAAAATATTGAATGATTCTA-TTTTT-AAAAGGAATTAAAT-TT
66 ATTATTAATTTATTTTCTTCCAAAAATATTGAATGATTCTATTTTTTAAAAAGAAAATAAATCGT
* * *
4706151 TGGATTTATTTTATTGAA-AATCTTAAATGATTCTTATTTTGTAAAAAG
131 CGAAATTATTTTATT-AAGAATCTTAAATGATT-TTATTTTGT-AAAAG
* * * * *
4706199 AAAATGAATTGTTGAATTTATTTTCTTAGGAATCTTAAACGATTCTTTTTTATTAAA-AGAAATA
1 AAAATAAATTGTTAAATTTATTTTCTTAGGAATCTTAAACGATTCTATCTT-TTAAACAGAAACA
* * * *
4706263 AATTATTGAATTTATTTTCTT-GAGAATTTTTGAATGATTCTATTTTTTTAAAAAAGAAAATAAA
65 AATTATT-AATTTATTTTCTTCCAAAAATATTGAATGATTCTA-TTTTTT-AAAAAGAAAATAAA
*
4706327 TCGTCGAAATTATTTTATTAAGAATCTTGAATGATTTTATTTTGTAAAAG
127 TCGTCGAAATTATTTTATTAAGAATCTTAAATGATTTTATTTTGTAAAAG
*
4706377 GAAATAAATTGTTA
1 AAAATAAATTGTTA
4706391 TATGATTATG
Statistics
Matches: 160, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
175 72 0.45
176 18 0.11
177 5 0.03
178 16 0.10
179 23 0.14
180 26 0.16
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.45
Consensus pattern (176 bp):
AAAATAAATTGTTAAATTTATTTTCTTAGGAATCTTAAACGATTCTATCTTTTAAACAGAAACAA
ATTATTAATTTATTTTCTTCCAAAAATATTGAATGATTCTATTTTTTAAAAAGAAAATAAATCGT
CGAAATTATTTTATTAAGAATCTTAAATGATTTTATTTTGTAAAAG
Found at i:4706302 original size:59 final size:56
Alignment explanation
Indices: 4706025--4706389 Score: 270
Period size: 58 Copynumber: 6.2 Consensus size: 56
4706015 TTTATATGAA
* * * * * *
4706025 AAATAAATTGCTAAATTTATTTTCTTAGGAATGTTAAATGATTCTATCTTTTAAACGG
1 AAATAAATTGTTGAATTTATTTTCTTA-GAATCTTAAATGATTCTTTTTTTTAAA-AG
* * * * *
4706083 AAACAAATTGTT-AATTTATTTTCTTCCAAAAATATTGAATGATTC-TATTTTTAAAAGG
1 AAATAAATTGTTGAATTTATTTTCTT---AGAATCTTAAATGATTCTTTTTTTTAAAA-G
* * * * *
4706141 AATTAAATT-TTGGATTTATTTTATTGAAAATCTTAAATGATTCTTATTTTGTAAAAAG
1 AAATAAATTGTTGAATTTATTTTCTT-AGAATCTTAAATGATTCTT-TTTT-TTAAAAG
* *
4706199 AAAATGAATTGTTGAATTTATTTTCTTAGGAATCTTAAACGATTCTTTTTTATTAAAAG
1 -AAATAAATTGTTGAATTTATTTTCTTA-GAATCTTAAATGATTCTTTTTT-TTAAAAG
* * *
4706258 AAATAAATTATTGAATTTATTTTCTTGAGAATTTTTGAATGATTCTATTTTTTTAAAAAAG
1 AAATAAATTGTTGAATTTATTTTCTT-AGAA-TCTTAAATGATTCT-TTTTTTT--AAAAG
* * * * * *
4706319 AAAATAAATCGTCGAAATTATTTTATTAAGAATCTTGAATGATT-TTATTTTGTAAAAGG
1 -AAATAAATTGTTGAATTTATTTTCTT-AGAATCTTAAATGATTCTT-TTTTTTAAAA-G
4706378 AAATAAATTGTT
1 AAATAAATTGTT
4706390 ATATGATTAT
Statistics
Matches: 247, Mismatches: 41, Indels: 38
0.76 0.13 0.12
Matches are distributed among these distances:
56 15 0.06
57 16 0.06
58 81 0.33
59 52 0.21
60 42 0.17
61 16 0.06
62 25 0.10
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (56 bp):
AAATAAATTGTTGAATTTATTTTCTTAGAATCTTAAATGATTCTTTTTTTTAAAAG
Found at i:4706352 original size:120 final size:117
Alignment explanation
Indices: 4706130--4706386 Score: 295
Period size: 120 Copynumber: 2.2 Consensus size: 117
4706120 AATGATTCTA
* *
4706130 TTTTTAAAAGGAATTAAATTTTGGATTTATTTTATTGAAAATCTTAAATGATTCTTATTTTGTAA
1 TTTTTAAAAGGAAATAAATTTTGAATTTATTTTATTGAAAATCTTAAATGATTCTTATTTTGTAA
* * * * * *
4706195 AAAGAAAATGAATTGTTGAATTTATTTTCTTAGGAATCTTAAACGATTCTT-T
66 AAAGAAAATAAATCGTCGAAATTATTTTATTAAGAATCTTAAACGATT-TTAT
* * * *
4706247 TTTATTAAAA-GAAATAAATTATTGAATTTATTTTCTTGAGAATTTTTGAATGATTC-TATTTTT
1 TTT-TTAAAAGGAAATAAATT-TTGAATTTATTTTATTGA-AAATCTTAAATGATTCTTA-TTTT
* * *
4706310 TTAAAAAAGAAAATAAATCGTCGAAATTATTTTATTAAGAATCTTGAATGATTTTAT
62 GT-AAAAAGAAAATAAATCGTCGAAATTATTTTATTAAGAATCTTAAACGATTTTAT
*
4706367 TTTGTAAAAGGAAATAAATT
1 TTTTTAAAAGGAAATAAATT
4706387 GTTATATGAT
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
117 12 0.10
118 24 0.21
119 25 0.21
120 56 0.48
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (117 bp):
TTTTTAAAAGGAAATAAATTTTGAATTTATTTTATTGAAAATCTTAAATGATTCTTATTTTGTAA
AAAGAAAATAAATCGTCGAAATTATTTTATTAAGAATCTTAAACGATTTTAT
Found at i:4710182 original size:54 final size:54
Alignment explanation
Indices: 4710100--4710221 Score: 226
Period size: 54 Copynumber: 2.3 Consensus size: 54
4710090 CCTCTTCAAT
*
4710100 GGGTATCGATACCTGCAGTGTAAAATTCAAATATTTCGACCGTTATATGACTAG
1 GGGTATCGGTACCTGCAGTGTAAAATTCAAATATTTCGACCGTTATATGACTAG
*
4710154 GGGTATCGGTACCTGCAGTGTAAAATTCAAATATTTTGACCGTTATATGACTAG
1 GGGTATCGGTACCTGCAGTGTAAAATTCAAATATTTCGACCGTTATATGACTAG
4710208 GGGTATCGGTACCT
1 GGGTATCGGTACCT
4710222 CTAAGGGGGT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (54 bp):
GGGTATCGGTACCTGCAGTGTAAAATTCAAATATTTCGACCGTTATATGACTAG
Found at i:4710285 original size:74 final size:74
Alignment explanation
Indices: 4710205--4710342 Score: 217
Period size: 74 Copynumber: 1.9 Consensus size: 74
4710195 GTTATATGAC
* *
4710205 TAGGGGTATCGGTACCTCTAAG-GGGGTATCGGTACCCA-TAGGGCATTCTGTTTTTCTCGGAGC
1 TAGGGGTATCGGTACC-CTAAGAGGGGTATCGGTACCCACT-GGGCAATCTGTTTTTCTCGAAGC
4710268 CAAAACTTGCA
64 CAAAACTTGCA
*
4710279 TAGGGGTATCGGTACCCTAGGAGGGGTATCGGTACCCACTGGGCAATCTGTTTTTCTCGAAGCC
1 TAGGGGTATCGGTACCCTAAGAGGGGTATCGGTACCCACTGGGCAATCTGTTTTTCTCGAAGCC
4710343 CTTCTATTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
73 4 0.07
74 54 0.92
75 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (74 bp):
TAGGGGTATCGGTACCCTAAGAGGGGTATCGGTACCCACTGGGCAATCTGTTTTTCTCGAAGCCA
AAACTTGCA
Found at i:4721203 original size:18 final size:18
Alignment explanation
Indices: 4721182--4721219 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
4721172 TTAAAATTAA
4721182 ATAAATATTATAAA-AAAT
1 ATAAA-ATTATAAATAAAT
*
4721200 ATAAAATTCTAAATAAAT
1 ATAAAATTATAAATAAAT
4721218 AT
1 AT
4721220 TATAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAAAATTATAAATAAAT
Found at i:4721258 original size:54 final size:52
Alignment explanation
Indices: 4721188--4721290 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 52
4721178 TTAAATAAAT
4721188 ATTATAAAAAATATAAAATTCT-AAATAAATATTATAAAAATTGATTGGAACC
1 ATTATAAAAAATATAAAATT-TGAAATAAATATTATAAAAATTGATTGGAACC
* * *
4721240 ATTATAAAAAAATTATAAAATTTGAAATAAATGTTATAAAAGTTGGTTGGA
1 ATTAT-AAAAAA-TATAAAATTTGAAATAAATATTATAAAAATTGATTGGA
4721291 GACAAATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
52 5 0.11
53 7 0.16
54 33 0.73
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (52 bp):
ATTATAAAAAATATAAAATTTGAAATAAATATTATAAAAATTGATTGGAACC
Found at i:4722918 original size:183 final size:186
Alignment explanation
Indices: 4722450--4722921 Score: 736
Period size: 188 Copynumber: 2.5 Consensus size: 186
4722440 AAATGTATTG
* * *
4722450 ATCCATAACAATATAACAGGTAAAAATACGAAAAATCGGTCTCGAAATGACAAAACTGGTAAAGC
1 ATCCATAACAATATAACAGGTAAAAATATGAAAAACCGGTCTCGAAATGACAAAACCGGTAAAGC
4722515 GCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
66 GCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
* * * *
4722580 AGAAGCAGTAATAGAGCTTATAAAGTGTCGATACTTTATAAAAAGTATAAAGTATCG
131 AGAAGCACTAATAGAGCCTATAAAGTATCGATACTTTATAAAAAG-ATAAAGTATCA
* * * *
4722637 ATCCATAACAATATAATAGGTAAAAATATGATAAAACCGATCTCGAAATGACAAAATCGGTATAG
1 ATCCATAACAATATAACAGGTAAAAATATGA-AAAACCGGTCTCGAAATGACAAAACCGGTAAAG
* *
4722702 CGCTACCGGATATGTTGAAAGTGTCCATACTTTAATATAAGTATCGACACTTTTGGAATTTGAAA
65 CGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAA
* * *
4722767 GAGAAGTACTAATAGCGCCTATAAAGTATTGATACTTTATAAAAA-A-AAA-TATCA
130 GAGAAGCACTAATAGAGCCTATAAAGTATCGATACTTTATAAAAAGATAAAGTATCA
4722821 ATCCATAACAATATAACAGG-AAAAATATGACAAAACCGGTCTCGAAATGACAAAACCGGTAAAG
1 ATCCATAACAATATAACAGGTAAAAATATGA-AAAACCGGTCTCGAAATGACAAAACCGGTAAAG
*
4722885 CGCTACCGAATATGTTGAAAGTGTCGATACTTTAATA
65 CGCTACCGGATATGTTGAAAGTGTCGATACTTTAATA
4722922 AGTACGCGTA
Statistics
Matches: 261, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
183 75 0.29
184 23 0.09
185 3 0.01
186 1 0.00
187 29 0.11
188 130 0.50
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (186 bp):
ATCCATAACAATATAACAGGTAAAAATATGAAAAACCGGTCTCGAAATGACAAAACCGGTAAAGC
GCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
AGAAGCACTAATAGAGCCTATAAAGTATCGATACTTTATAAAAAGATAAAGTATCA
Found at i:4725200 original size:18 final size:18
Alignment explanation
Indices: 4725176--4725218 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4725166 GCAAGGAGTT
4725176 AGAGGAGGCAG-AGGAGGA
1 AGAGGAGGCAGTA-GAGGA
*
4725194 AGTGGAGGCAGTAGAGGA
1 AGAGGAGGCAGTAGAGGA
4725212 AGAGGAG
1 AGAGGAG
4725219 AAGGAAGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.37, C:0.05, G:0.53, T:0.05
Consensus pattern (18 bp):
AGAGGAGGCAGTAGAGGA
Found at i:4725643 original size:18 final size:18
Alignment explanation
Indices: 4725616--4725654 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
4725606 AAAAAATATA
*
4725616 AAGAAAAAAATATGGAGG
1 AAGAAAAAAAGATGGAGG
*
4725634 AAGAAGAAAAGATGGAGG
1 AAGAAAAAAAGATGGAGG
4725652 AAG
1 AAG
4725655 TAAGGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.33, T:0.08
Consensus pattern (18 bp):
AAGAAAAAAAGATGGAGG
Found at i:4728142 original size:19 final size:19
Alignment explanation
Indices: 4728118--4728165 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
4728108 ATGTAGGGGA
4728118 AATTTTGTATAAGATTCAT
1 AATTTTGTATAAGATTCAT
* *
4728137 AATTTTGTATACGATTTAT
1 AATTTTGTATAAGATTCAT
4728156 AATTTTGTAT
1 AATTTTGTAT
4728166 GTGAATGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.52
Consensus pattern (19 bp):
AATTTTGTATAAGATTCAT
Found at i:4731278 original size:200 final size:198
Alignment explanation
Indices: 4730923--4731450 Score: 749
Period size: 200 Copynumber: 2.7 Consensus size: 198
4730913 TAGGTAAACA
* * *
4730923 AAAGTGTCGATACATTT-TCTAAAAGTATCGATTCTAAAAACATCGAAACCAATAATTATAATGT
1 AAAGTGTCGATACATTTAT-TAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGT
* * * *
4730987 AATAGGTAAATTTACAATGTAACCAGTATAAATATACCGATTTTATGAGAGAATAGGTCAACATA
65 AATAGGTAAATTTACAATGT-ACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATA
* *
4731052 ATGTATCGACACTTTTTAAATTTGTGTCGATACATTTTGTCCAGAATGAATGACAAACGGGGTGC
129 ATGTATCGACACTCTTTAAATTTGTGTCGATAC-TTTTGTCCAGAATGAATGACAAACGAGGTGC
4731117 ACGCAT
193 ACGCAT
* *
4731123 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAATATCGAAACCGATAATTACAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTA
* *
4731188 ATAGGTAAATTTACAATGTACCCGGTAGAAATATACCGGTTTTATGAGAAAATATGTCTACATAA
66 ATAGGTAAATTTACAATGTA-CCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAA
* * * *
4731253 TGTATCGACACTCTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTGCAC
130 TGTATCGACACTCTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGACAAACGAGGTGCAC
4731318 GCAT
195 GCAT
* * *
4731322 AAAGTGTCGATACATTTA--AAATTGTATCGATCCCACAAACATCGAAACCGAAAATTATAATGT
1 AAAGTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGT
* * * *
4731385 AATAGGTAAATTTGCAATGTTACCGATATAAATATACCGG-TTTAGTTAGAAAATATGTCAATAT
65 AATAGGTAAATTTACAATG-TACCGGTATAAATATACCGGTTTTA-TGAGAAAATATGTCAACAT
4731449 AA
128 AA
4731451 ACGCTACTTA
Statistics
Matches: 295, Mismatches: 28, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
197 7 0.02
198 88 0.30
199 54 0.18
200 145 0.49
201 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (198 bp):
AAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTA
ATAGGTAAATTTACAATGTACCGGTATAAATATACCGGTTTTATGAGAAAATATGTCAACATAAT
GTATCGACACTCTTTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGACAAACGAGGTGCACG
CAT
Found at i:4731534 original size:64 final size:64
Alignment explanation
Indices: 4731465--4731584 Score: 213
Period size: 64 Copynumber: 1.9 Consensus size: 64
4731455 TACTTATTAC
* *
4731465 ATTATATAAGTGCTACCTAATATGTTATTGTACTTGATAATATTTTCGGTTAAATGCCTATTTT
1 ATTATATAAGCGCTACCTAATATGTTATTATACTTGATAATATTTTCGGTTAAATGCCTATTTT
*
4731529 ATTATATAAGCGTTACCTAATATGTTATTATACTTGATAATATTTTCGGTTAAATG
1 ATTATATAAGCGCTACCTAATATGTTATTATACTTGATAATATTTTCGGTTAAATG
4731585 ATATAACATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (64 bp):
ATTATATAAGCGCTACCTAATATGTTATTATACTTGATAATATTTTCGGTTAAATGCCTATTTT
Found at i:4733994 original size:29 final size:29
Alignment explanation
Indices: 4733959--4734040 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
4733949 AAACTAAATT
*
4733959 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
4733988 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
4734017 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
4734041 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:4738868 original size:29 final size:29
Alignment explanation
Indices: 4738805--4738888 Score: 132
Period size: 29 Copynumber: 2.8 Consensus size: 29
4738795 CAAACTAAAT
*
4738805 TGATGTCATTACTTACATCATTTTAATTAA
1 TGATGTCATTGCTTACATCA-TTTAATTAA
*
4738835 AGATGTCATTGCTTACATCATTTAATTAA
1 TGATGTCATTGCTTACATCATTTAATTAA
4738864 TGATGTCATTGCTTACATCAATTTA
1 TGATGTCATTGCTTACATC-ATTTA
4738889 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
29 27 0.54
30 23 0.46
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (29 bp):
TGATGTCATTGCTTACATCATTTAATTAA
Found at i:4741477 original size:23 final size:23
Alignment explanation
Indices: 4741443--4741490 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
4741433 GTTTTAATAA
4741443 CTTTGTTCTTATGACATGTTTCC
1 CTTTGTTCTTATGACATGTTTCC
*
4741466 CTTTG-TCTTTATGACTTGTTTCC
1 CTTTGTTC-TTATGACATGTTTCC
4741489 CT
1 CT
4741491 CAGTTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.10, C:0.23, G:0.12, T:0.54
Consensus pattern (23 bp):
CTTTGTTCTTATGACATGTTTCC
Found at i:4750863 original size:9 final size:9
Alignment explanation
Indices: 4750849--4750873 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4750839 TAATTAGTAT
4750849 ATATATATA
1 ATATATATA
4750858 ATATATATA
1 ATATATATA
4750867 ATATATA
1 ATATATA
4750874 GTTTTAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:4750976 original size:37 final size:37
Alignment explanation
Indices: 4750857--4751133 Score: 317
Period size: 37 Copynumber: 7.4 Consensus size: 37
4750847 ATATATATAT
* * * *
4750857 AATATATATAATATATAGTTTTAGAAAATGTTTTTTCAT
1 AATATATATAATATATAGTTTTTGAAAA--TATTTTGAA
* *
4750896 AACATATATAATACATAG-TTTT-AAAATTATTTTGAA
1 AATATATATAATATATAGTTTTTGAAAA-TATTTTGAA
* * *
4750932 GATATATATAATATATAGTTTTTGAAAACATTTTAAA
1 AATATATATAATATATAGTTTTTGAAAATATTTTGAA
* *
4750969 AACATATATAATATATAGTTTTTAAAAATATTTTGAA
1 AATATATATAATATATAGTTTTTGAAAATATTTTGAA
* *
4751006 AATATATATAATATATAGATTTTGAAAACATTTTGAA
1 AATATATATAATATATAGTTTTTGAAAATATTTTGAA
*
4751043 AATATATATAATATATAGTTTTTGAAAACATTTTGAA
1 AATATATATAATATATAGTTTTTGAAAATATTTTGAA
* *
4751080 TATATATATATATATATATA-TATTTGAAAATATTTTTAA
1 -A-ATATATATA-ATATATAGTTTTTGAAAATATTTTGAA
* *
4751119 AATGTATATTATATA
1 AATATATATAATATA
4751134 AAATATTTAT
Statistics
Matches: 206, Mismatches: 27, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
36 26 0.13
37 123 0.60
38 9 0.04
39 41 0.20
40 7 0.03
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (37 bp):
AATATATATAATATATAGTTTTTGAAAATATTTTGAA
Found at i:4751191 original size:21 final size:21
Alignment explanation
Indices: 4751150--4751194 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
4751140 TTATGTATTA
*
4751150 TATCATTATTTATTTTCTTTT
1 TATCATTATTTATTTTATTTT
4751171 TATC-TTATTTATTTTAATTTT
1 TATCATTATTTATTTT-ATTTT
4751192 TAT
1 TAT
4751195 TTTTTGGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (21 bp):
TATCATTATTTATTTTATTTT
Found at i:4752336 original size:144 final size:144
Alignment explanation
Indices: 4752149--4752436 Score: 576
Period size: 144 Copynumber: 2.0 Consensus size: 144
4752139 GATGTCTAGG
4752149 TTCAGGAGATTAGAATAGGTTATATAGTTTGTTCCCGCAATACCAGTGAAAATATACATATGTTT
1 TTCAGGAGATTAGAATAGGTTATATAGTTTGTTCCCGCAATACCAGTGAAAATATACATATGTTT
4752214 TAAAATAGTAGCAATTTAAAATATATTTACCCTGTGCACAAAGTAGAGGAGCATGCAAAAACGAT
66 TAAAATAGTAGCAATTTAAAATATATTTACCCTGTGCACAAAGTAGAGGAGCATGCAAAAACGAT
4752279 AAGGTCTTATCCTT
131 AAGGTCTTATCCTT
4752293 TTCAGGAGATTAGAATAGGTTATATAGTTTGTTCCCGCAATACCAGTGAAAATATACATATGTTT
1 TTCAGGAGATTAGAATAGGTTATATAGTTTGTTCCCGCAATACCAGTGAAAATATACATATGTTT
4752358 TAAAATAGTAGCAATTTAAAATATATTTACCCTGTGCACAAAGTAGAGGAGCATGCAAAAACGAT
66 TAAAATAGTAGCAATTTAAAATATATTTACCCTGTGCACAAAGTAGAGGAGCATGCAAAAACGAT
4752423 AAGGTCTTATCCTT
131 AAGGTCTTATCCTT
4752437 GCACATAGCA
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (144 bp):
TTCAGGAGATTAGAATAGGTTATATAGTTTGTTCCCGCAATACCAGTGAAAATATACATATGTTT
TAAAATAGTAGCAATTTAAAATATATTTACCCTGTGCACAAAGTAGAGGAGCATGCAAAAACGAT
AAGGTCTTATCCTT
Found at i:4752624 original size:43 final size:43
Alignment explanation
Indices: 4752422--4752625 Score: 259
Period size: 43 Copynumber: 4.7 Consensus size: 43
4752412 GCAAAAACGA
* * * * *
4752422 TAAGGTCTTATCCTTGCACATAGCAAAAGAGCCT-GGGAAA-TGG
1 TAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGGAAACT-G
* *
4752465 TAAGGTCTTACCCTTGCACACAACGAAGGAGCCTGGGGAAACTG
1 TAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTG
* *
4752509 TAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGAAATTG
1 TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTG
4752552 TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTG
* * *
4752595 TAAGGCATAACCTTGTACACAACAAAGGAAC
1 TAAGGCTTACCCTTGCACACAACAAAGGAAC
4752626 GTGAAATAAT
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
43 132 0.91
44 12 0.08
45 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (43 bp):
TAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTG
Found at i:4757907 original size:157 final size:159
Alignment explanation
Indices: 4757631--4757946 Score: 618
Period size: 157 Copynumber: 2.0 Consensus size: 159
4757621 TTTCAGATCT
4757631 AGCCTTTCCCGAGACTCTTTTGTAAAAACCAAAGTTATTTTTGAAAAGAGGGTGAAAAAAGATTT
1 AGCCTTTCCCGAGACTCTTTTGTAAAAACCAAAGTTATTTTTGAAAAGAGGGTGAAAAAAGATTT
4757696 CAAAATGTAAAAAAAATTCATTGCCGATGAATGGCGGCCGACGAGGTGGTGGCTGGCCAAAAACT
66 CAAAATGTAAAAAAAATTCATTGCCGATGAATGGCGGCCGACGAGGTGGTGGCTGGCCAAAAACT
4757761 GGGTTTAAGATTAAATGTT-TTCGTGTCA
131 GGGTTTAAGATTAAATGTTCTTCGTGTCA
4757789 AGCCTTTCCCGAGACTCTTTTGTAAAAACCAAAG-TATTTTTGAAAAGAGGGTGAAAAAAGATTT
1 AGCCTTTCCCGAGACTCTTTTGTAAAAACCAAAGTTATTTTTGAAAAGAGGGTGAAAAAAGATTT
4757853 CAAAATGTAAAAAAAATTCATTGCCGATGAATGGCGGCCGACGAGGTGGTGGCTGGCCAAAAACT
66 CAAAATGTAAAAAAAATTCATTGCCGATGAATGGCGGCCGACGAGGTGGTGGCTGGCCAAAAACT
4757918 GGGTTTAAGATTAAATGTTCTTCGTGTCA
131 GGGTTTAAGATTAAATGTTCTTCGTGTCA
4757947 TGAAGAACAT
Statistics
Matches: 157, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
157 114 0.73
158 43 0.27
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (159 bp):
AGCCTTTCCCGAGACTCTTTTGTAAAAACCAAAGTTATTTTTGAAAAGAGGGTGAAAAAAGATTT
CAAAATGTAAAAAAAATTCATTGCCGATGAATGGCGGCCGACGAGGTGGTGGCTGGCCAAAAACT
GGGTTTAAGATTAAATGTTCTTCGTGTCA
Found at i:4762797 original size:67 final size:67
Alignment explanation
Indices: 4762720--4762854 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
4762710 CTTGAAGCTT
4762720 TTTTTAAAAAATGACATTCCCTTGAGCAATAGAGAATTGTTTGAAATTCAGTGAATATCAAGTAT
1 TTTTTAAAAAATGACATTCCCTTGAGCAATAGAGAATTGTTTGAAATTCAGTGAATATCAAGTAT
4762785 AA
66 AA
4762787 TTTTTAAAAAATGACATTCCCTTGAGCAATAGAGAATTGTTTGAAATTCAGTGAATATCAAGTAT
1 TTTTTAAAAAATGACATTCCCTTGAGCAATAGAGAATTGTTTGAAATTCAGTGAATATCAAGTAT
4762852 AA
66 AA
4762854 T
1 T
4762855 GAATTGTTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (67 bp):
TTTTTAAAAAATGACATTCCCTTGAGCAATAGAGAATTGTTTGAAATTCAGTGAATATCAAGTAT
AA
Found at i:4765903 original size:201 final size:199
Alignment explanation
Indices: 4765575--4766129 Score: 616
Period size: 201 Copynumber: 2.8 Consensus size: 199
4765565 TGAGAAGGGT
*
4765575 TATTTGTCAACGAAAACTTTTGAGTTCGATTCCATTCAGCTCGAGG-GCATATCAACTGCATGTT
1 TATTTGTCAACGAAAACTTTTGAGTTCGATTCCATTCAGCTCGAGGTG--TATCAACTGCATGGT
* * * * *
4765639 AGCAACAATGAACTACTTTTCGGTTGAATTTTAAATTGAGGTCTTTAAGCCTAGAATAAGACCTA
64 AGCAA-AAGGAACTATTTTTCGATTGAATTTTAAACTGAGGTCTTTAAGCCTAGAAGAAGACCTA
* * *
4765704 GGTTGGCTACGATTTAGCAACAAGGAGCTATTTCCCAGCCGAATTTACAACATAGCTTAAGT-CG
128 GGTTGGCTACGATTTAGCAACAAGGAACTATCTCCCAGCCGAATTTACAACATAGCTCAA-TACG
*
4765768 AGAAAAGT
192 AGAAAAGC
* * * *
4765776 TGTTTGTCAATGAAAACTTTCGAGTTCGATTCCATTCAACTCGATGGTGTATCAACTGCATGGTA
1 TATTTGTCAACGAAAACTTTTGAGTTCGATTCCATTCAGCTCGA-GGTGTATCAACTGCATGGTA
* * *
4765841 GCAGTAAGGAACTATTTTTCGATTGAATTTTAAACTGAGGACTTTAAGGCTAGAAGAAGACCTAG
65 GCA-AAAGGAACTATTTTTCGATTGAATTTTAAACTGAGGTCTTTAAGCCTAGAAGAAGACCTAG
* ** ** *
4765906 GTTAGCTACGATTTAGCAATGAGGAACTATCTGTCAGCCTAATTTACAACATAGCTCAATACGAG
129 GTTGGCTACGATTTAGCAACAAGGAACTATCTCCCAGCCGAATTTACAACATAGCTCAATACGAG
**
4765971 AAGGGC
194 AAAAGC
* * * * * *
4765977 TATCTATCAACGAAGACTTTTGAGTTCGATTCCATTCAGCTCGAGAATG-ATTCAACCGCATTGT
1 TATTTGTCAACGAAAACTTTTGAGTTCGATTCCATTCAGCTCGAG-GTGTA-TCAACTGCATGGT
* * * * * *
4766041 AGCAAAGAGGAACTACTTTCTT--ATTGATTTTTTAACCGATGTCTTTAAGCCAAGAAGAAAACC
64 AGCAAA-AGGAACTA-TTT-TTCGATTGAATTTTAAACTGAGGTCTTTAAGCCTAGAAGAAGACC
* * *
4766104 AAGGTTGACTACGATTTGGCAACAAG
126 TAGGTTGGCTACGATTTAGCAACAAG
4766130 AAGCCACTTT
Statistics
Matches: 295, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
200 4 0.01
201 283 0.96
202 5 0.02
203 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (199 bp):
TATTTGTCAACGAAAACTTTTGAGTTCGATTCCATTCAGCTCGAGGTGTATCAACTGCATGGTAG
CAAAAGGAACTATTTTTCGATTGAATTTTAAACTGAGGTCTTTAAGCCTAGAAGAAGACCTAGGT
TGGCTACGATTTAGCAACAAGGAACTATCTCCCAGCCGAATTTACAACATAGCTCAATACGAGAA
AAGC
Found at i:4766564 original size:38 final size:37
Alignment explanation
Indices: 4766512--4766683 Score: 132
Period size: 37 Copynumber: 4.6 Consensus size: 37
4766502 TAGTATATAT
* * *
4766512 ATATATAATTTATAGTTTTGAAATTTTTTTTTCATAAC
1 ATATATAATATATAGTTTTGAAA-TTTATTTTCAAAAC
* * *
4766550 ATATATAATATATAGTTTT-CAATTTATTTTGAAAAT
1 ATATATAATATATAGTTTTGAAATTTATTTTCAAAAC
* ** * *
4766586 ATATAAAATATATAGTTTTTGAAA-ACATGTTAAAAAC
1 ATATATAATATATAG-TTTTGAAATTTATTTTCAAAAC
* * ** * * *
4766623 ATATATAATATATTGTTTTTAAAAATAGTTTGAAAAT
1 ATATATAATATATAGTTTTGAAATTTATTTTCAAAAC
*
4766660 ATATAAAATATATAGCTTTTGAAA
1 ATATATAATATATAG-TTTTGAAA
4766684 ATATATATAT
Statistics
Matches: 106, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
36 31 0.29
37 48 0.45
38 27 0.25
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (37 bp):
ATATATAATATATAGTTTTGAAATTTATTTTCAAAAC
Found at i:4766655 original size:74 final size:73
Alignment explanation
Indices: 4766547--4766684 Score: 213
Period size: 74 Copynumber: 1.9 Consensus size: 73
4766537 TTTTTTTCAT
* ** * *
4766547 AACATATATAATATATAGTTTTCAATTTATTTTGAAAATATATAAAATATATAGTTTTTGAAAAC
1 AACATATATAATATATAGTTTTAAAAATAGTTTGAAAATATATAAAATATATAGCTTTTGAAAAC
4766612 ATGTTAAA
66 ATGTTAAA
*
4766620 AACATATATAATATATTGTTTTTAAAAATAGTTTGAAAATATATAAAATATATAGCTTTTGAAAA
1 AACATATATAATATATAG-TTTTAAAAATAGTTTGAAAATATATAAAATATATAGCTTTTGAAAA
4766685 TATATATATA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
73 17 0.29
74 41 0.71
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (73 bp):
AACATATATAATATATAGTTTTAAAAATAGTTTGAAAATATATAAAATATATAGCTTTTGAAAAC
ATGTTAAA
Found at i:4766680 original size:26 final size:28
Alignment explanation
Indices: 4766651--4766712 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
4766641 TTAAAAATAG
4766651 TTTGAAAATATATA-A-AATATATAGCT
1 TTTGAAAATATATATATAATATATAGCT
*
4766677 TTTGAAAATATATATATAATATATAGTT
1 TTTGAAAATATATATATAATATATAGCT
*
4766705 TTTTAAAA
1 TTTGAAAA
4766713 CATTTTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 14 0.44
27 1 0.03
28 17 0.53
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (28 bp):
TTTGAAAATATATATATAATATATAGCT
Found at i:4766685 original size:37 final size:36
Alignment explanation
Indices: 4766550--4766768 Score: 159
Period size: 37 Copynumber: 6.1 Consensus size: 36
4766540 TTTTCATAAC
* * **
4766550 ATATATAATATATAG-TTTTCAATTTATTTTGAAAAT
1 ATATAAAATATATAGTTTTTGAAAATA-TTTGAAAAT
* * *
4766586 ATATAAAATATATAGTTTTTGAAAACATGTTAAAAAC
1 ATATAAAATATATAGTTTTTGAAAATAT-TTGAAAAT
* * *
4766623 ATATATAATATATTGTTTTTAAAAATAGTTTGAAAAT
1 ATATAAAATATATAGTTTTTGAAAATA-TTTGAAAAT
*
4766660 ATATAAAATATATAGCTTTTGAAAATA--T----AT
1 ATATAAAATATATAGTTTTTGAAAATATTTGAAAAT
* *
4766690 ATAT--AATATATAGTTTTTTAAAACATTTTGAAGATAT
1 ATATAAAATATATAGTTTTTGAAAATA-TTTGAA-A-AT
* * * *
4766727 ATATATAATACATAATTTTTGAAAATATATTTAAAAT
1 ATATAAAATATATAGTTTTTGAAAATAT-TTGAAAAT
4766764 ATATA
1 ATATA
4766769 TTACATAAAA
Statistics
Matches: 143, Mismatches: 25, Indels: 29
0.73 0.13 0.15
Matches are distributed among these distances:
28 18 0.13
30 6 0.04
31 1 0.01
34 1 0.01
36 15 0.10
37 78 0.55
38 3 0.02
39 21 0.15
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.43
Consensus pattern (36 bp):
ATATAAAATATATAGTTTTTGAAAATATTTGAAAAT
Found at i:4766695 original size:65 final size:67
Alignment explanation
Indices: 4766623--4766768 Score: 188
Period size: 67 Copynumber: 2.2 Consensus size: 67
4766613 TGTTAAAAAC
* * * *
4766623 ATATATAATATATTGTTTTTAAAAATAGTTTGAA-A-ATATATAAAATATATAGCTTTTGAAAAT
1 ATATATAATATATAGTTTTTAAAAACAGTTTGAAGATATATATAAAATACATAACTTTTGAAAAT
4766686 AT
66 AT
* * * *
4766688 ATATATAATATATAGTTTTTTAAAACATTTTGAAGATATATATATAATACATAATTTTTGAAAAT
1 ATATATAATATATAGTTTTTAAAAACAGTTTGAAGATATATATAAAATACATAACTTTTGAAAAT
4766753 AT
66 AT
* *
4766755 ATTTAAAATATATA
1 ATATATAATATATA
4766769 TTACATAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
65 30 0.43
66 1 0.01
67 38 0.55
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (67 bp):
ATATATAATATATAGTTTTTAAAAACAGTTTGAAGATATATATAAAATACATAACTTTTGAAAAT
AT
Found at i:4766719 original size:39 final size:39
Alignment explanation
Indices: 4766676--4766769 Score: 127
Period size: 39 Copynumber: 2.4 Consensus size: 39
4766666 AATATATAGC
* * *
4766676 TTTTGAAAATATATATATAATATATAGTTTTTTAAAACA
1 TTTTGAAAATATATATATAATACATAATTTTTGAAAACA
* *
4766715 TTTTGAAGATATATATATAATACATAATTTTTGAAAATA
1 TTTTGAAAATATATATATAATACATAATTTTTGAAAACA
4766754 TATTT-AAAATATATAT
1 T-TTTGAAAATATATAT
4766770 TACATAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
39 45 0.94
40 3 0.06
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (39 bp):
TTTTGAAAATATATATATAATACATAATTTTTGAAAACA
Found at i:4787746 original size:26 final size:25
Alignment explanation
Indices: 4787713--4787762 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
4787703 TATTAGGGAT
4787713 TTTATTAATTTAAATT-AATTAAATC
1 TTTATTAA-TTAAATTAAATTAAATC
*
4787738 TTTATTTAATTAATTTAAATTAAAT
1 TTTA-TTAATTAAATTAAATTAAAT
4787763 ATTAGGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATTAATTAAATTAAATTAAATC
Found at i:4790592 original size:243 final size:245
Alignment explanation
Indices: 4790164--4790651 Score: 962
Period size: 243 Copynumber: 2.0 Consensus size: 245
4790154 TCAGGTTCAT
4790164 TGATCTGTTGTTCTTGAACTTCTCCAAGTTCAATATTTCTACCCTTCCCTTTCTTTGAAAGAAAT
1 TGATCTGTTGTTCTTGAACTTCTCCAAGTTCAATATTTCTACCCTTCCCTTTCTTTGAAAGAAAT
4790229 TCTCTTTCGAGGAAAACTCTCGTTTGAGCAAAAAATATTTTGTTCTTATTAGGGTTGAAGAAATA
66 TCTCTTTCGAGGAAAACTCTCGTTTGAGCAAAAAATATTTTGTTCTTATTAGGGTTGAAGAAATA
4790294 GTATTCTTAGTTTCTTTAGTATATCCAACAAATATACACTTATGAGATTTAGGTACGAGCTTTGT
131 GTATTCTTAGTTTCTTTAGTATATCCAACAAATATACACTTATGAGATTTAGGTACGAGCTTTGT
4790359 AAACATCTGATG-TTT-TATAAGCTTCACAACCCTAAATCTTCATAAAAA
196 AAACATCTGATGTTTTATATAAGCTTCACAACCCTAAATCTTCATAAAAA
4790407 TGATCTGTTGTTCTTGAACTTCTCCAAGTTCAATATTTCTACCCTTCCCTTTCTTTGAAAGAAAT
1 TGATCTGTTGTTCTTGAACTTCTCCAAGTTCAATATTTCTACCCTTCCCTTTCTTTGAAAGAAAT
4790472 TCTCTTTCGAGGAAAACTCTCGTTTGAGCAAAAAATATTTTGTTCTTATTAGGGTTGAAGAAATA
66 TCTCTTTCGAGGAAAACTCTCGTTTGAGCAAAAAATATTTTGTTCTTATTAGGGTTGAAGAAATA
4790537 GTATTCTTAGTTTCTTTAGTATATCCAACAAATATACACTTATGAGATTTAGGTACGAGCTTTGT
131 GTATTCTTAGTTTCTTTAGTATATCCAACAAATATACACTTATGAGATTTAGGTACGAGCTTTGT
4790602 AAACATCTGATGTTTTATATAAGCTTCACAACCCTAAATCTTCATAAAAA
196 AAACATCTGATGTTTTATATAAGCTTCACAACCCTAAATCTTCATAAAAA
4790652 ACATACTAGG
Statistics
Matches: 243, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
243 207 0.85
244 3 0.01
245 33 0.14
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (245 bp):
TGATCTGTTGTTCTTGAACTTCTCCAAGTTCAATATTTCTACCCTTCCCTTTCTTTGAAAGAAAT
TCTCTTTCGAGGAAAACTCTCGTTTGAGCAAAAAATATTTTGTTCTTATTAGGGTTGAAGAAATA
GTATTCTTAGTTTCTTTAGTATATCCAACAAATATACACTTATGAGATTTAGGTACGAGCTTTGT
AAACATCTGATGTTTTATATAAGCTTCACAACCCTAAATCTTCATAAAAA
Found at i:4794950 original size:136 final size:136
Alignment explanation
Indices: 4794706--4794986 Score: 535
Period size: 136 Copynumber: 2.1 Consensus size: 136
4794696 CAAAACATAC
4794706 AACAATATATGGTGGGATAGTATTGACTCAAGTATAAGGATCATACATATAGTCATCACCATGAG
1 AACAATATATGGTGGGATAGTATTGACTCAAGTATAAGGATCATACATATAGTCATCACCATGAG
4794771 AAATGTTATGATTGTCACATAATAATCCAAGTCATATGCTCATGGTGGGTTAATCCAATACATTG
66 AAATGTTATGATTGTCACATAATAATCCAAGTCATATGCTCATGGTGGGTTAATCCAATACATTG
*
4794836 TTCTCT
131 TTATCT
* *
4794842 AACAATATATGTTGGGATAGTATTGACTCAAGTATGAGGATCATACATATAGTCATCACCATGAG
1 AACAATATATGGTGGGATAGTATTGACTCAAGTATAAGGATCATACATATAGTCATCACCATGAG
4794907 AAATGTTATGATTGTCACATAATAATCCAAGTCATATGCTCATGGTGGGTTAATCCAATACATTG
66 AAATGTTATGATTGTCACATAATAATCCAAGTCATATGCTCATGGTGGGTTAATCCAATACATTG
4794972 TTATCT
131 TTATCT
4794978 AACAATATA
1 AACAATATA
4794987 ATCATGTATC
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 142 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (136 bp):
AACAATATATGGTGGGATAGTATTGACTCAAGTATAAGGATCATACATATAGTCATCACCATGAG
AAATGTTATGATTGTCACATAATAATCCAAGTCATATGCTCATGGTGGGTTAATCCAATACATTG
TTATCT
Found at i:4815544 original size:17 final size:17
Alignment explanation
Indices: 4815502--4815571 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
4815492 TAAGTCATCA
* *
4815502 AGTTCATTAAATAAAGTT
1 AGTTCATTAATTAAA-CT
*
4815520 AGTTCATTGATTAAACT
1 AGTTCATTAATTAAACT
* * *
4815537 AGTCCATTCATTTAACT
1 AGTTCATTAATTAAACT
*
4815554 AGTTCATTAATCAAACT
1 AGTTCATTAATTAAACT
4815571 A
1 A
4815572 ATTTTTAATT
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
17 29 0.69
18 13 0.31
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (17 bp):
AGTTCATTAATTAAACT
Found at i:4817485 original size:53 final size:53
Alignment explanation
Indices: 4817405--4818034 Score: 919
Period size: 53 Copynumber: 11.9 Consensus size: 53
4817395 GTACTTTTGA
*
4817405 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTAGCATTTCGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* *
4817458 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTATCATTTCAG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* * *
4817511 CACTATATGTGCATCCATGGTATTCATATTGAGTTTATGAATTACCATTTCGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* * **
4817564 CACTATGTGTGCATCCAAGGTATTTATAATGAGTTTGTGAATTACCATTTCCA
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* *
4817617 CACTATGTGTGCATCCATTGTATTCATAATGAGTTTGTGAATTACCATTTAGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* * * *
4817670 CACTATGTGTGTATATACAT--TATTCATAATGATTTTGT-AA--ACCATTTTGG
1 CACTATGTGTG--CATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* *
4817720 CACTATGTGTGCATCCACGGTATTCATAATGAGTTTGTGAATTACCATTTCGA
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* *
4817773 CACTATGTGTGCATCCATGGTATTCATAATAAGTTTGTGAATTACCATTTTGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* * *
4817826 CACTATGTGTGCATCTAAGGTATTCATAATGAGTTTGTGAATTACTATTTCGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* ** *
4817879 CACTATGTGTGTATCCACAGTATTCATAATGAGTTTGTGAATTACCATTTCGA
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
**
4817932 CACTATGTGTTAATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
* * *
4817985 CACTATGTGTGCATCCATGGTATTTATAATGAGTTTATGAATTATCATTT
1 CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTT
4818035 TGTTACCTTA
Statistics
Matches: 515, Mismatches: 55, Indels: 14
0.88 0.09 0.02
Matches are distributed among these distances:
48 4 0.01
50 37 0.07
51 2 0.00
52 2 0.00
53 465 0.90
55 5 0.01
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (53 bp):
CACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGG
Found at i:4817977 original size:315 final size:315
Alignment explanation
Indices: 4817399--4817995 Score: 989
Period size: 315 Copynumber: 1.9 Consensus size: 315
4817389 CTATATGTAC
* * *
4817399 TTTTGACACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTAGCATTTCGGCACTAT
1 TTTTGACACTATGTGTGCATCCACGGTATTCATAATGAGTTTGTGAATTACCATTTCGACACTAT
* * *
4817464 GTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTATCATTTCAGCACTATATGTGCATCCAT
66 GTGTGCATCCATGGTATTCATAATAAGTTTGTGAATTACCATTTCAGCACTATATGTGCATCCAA
* *
4817529 GGTATTCATATTGAGTTTATGAATTACCATTTCGGCACTATGTGTGCATCCAAGGTATTTATAAT
131 GGTATTCATAATGAGTTTATGAATTACCATTTCGGCACTATGTGTGCATCCAAGGTATTCATAAT
* *
4817594 GAGTTTGTGAATTACCATTTCCACACTATGTGTGCATCCATTGTATTCATAATGAGTTTGTGAAT
196 GAGTTTGTGAATTACCATTTCCACACTATGTGTGAATCCATGGTATTCATAATGAGTTTGTGAAT
4817659 TACCATTTAGGCACTATGTGTGTATATACATTATTCATAATGATTTTGTAAACCA
261 TACCATTTAGGCACTATGTGTGTATATACATTATTCATAATGATTTTGTAAACCA
*
4817714 TTTTGGCACTATGTGTGCATCCACGGTATTCATAATGAGTTTGTGAATTACCATTTCGACACTAT
1 TTTTGACACTATGTGTGCATCCACGGTATTCATAATGAGTTTGTGAATTACCATTTCGACACTAT
** * *
4817779 GTGTGCATCCATGGTATTCATAATAAGTTTGTGAATTACCATTTTGGCACTATGTGTGCATCTAA
66 GTGTGCATCCATGGTATTCATAATAAGTTTGTGAATTACCATTTCAGCACTATATGTGCATCCAA
* * *
4817844 GGTATTCATAATGAGTTTGTGAATTACTATTTCGGCACTATGTGTGTATCCACA-GTATTCATAA
131 GGTATTCATAATGAGTTTATGAATTACCATTTCGGCACTATGTGTGCATCCA-AGGTATTCATAA
* *
4817908 TGAGTTTGTGAATTACCATTTCGACACTATGTGTTAATCCATGGTATTCATAATGAGTTTGTGAA
195 TGAGTTTGTGAATTACCATTTCCACACTATGTGTGAATCCATGGTATTCATAATGAGTTTGTGAA
*
4817973 TTACCATTTCGGCACTATGTGTG
260 TTACCATTTAGGCACTATGTGTG
4817996 CATCCATGGT
Statistics
Matches: 260, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
315 259 1.00
316 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (315 bp):
TTTTGACACTATGTGTGCATCCACGGTATTCATAATGAGTTTGTGAATTACCATTTCGACACTAT
GTGTGCATCCATGGTATTCATAATAAGTTTGTGAATTACCATTTCAGCACTATATGTGCATCCAA
GGTATTCATAATGAGTTTATGAATTACCATTTCGGCACTATGTGTGCATCCAAGGTATTCATAAT
GAGTTTGTGAATTACCATTTCCACACTATGTGTGAATCCATGGTATTCATAATGAGTTTGTGAAT
TACCATTTAGGCACTATGTGTGTATATACATTATTCATAATGATTTTGTAAACCA
Found at i:4823467 original size:53 final size:53
Alignment explanation
Indices: 4823380--4823590 Score: 350
Period size: 53 Copynumber: 4.0 Consensus size: 53
4823370 GTGTACTTTT
4823380 GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTC
1 GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTC
* * *
4823433 GGCAATATATGTGCATCCATGATATTCATAATGAGTTTGTGAATTACCATTTC
1 GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTC
* * * *
4823486 GACACTATGTGTGCATCCATGGTATTCATAATTAGTTTTTAAATTACCATTTC
1 GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTC
*
4823539 GGCACTATGTGTGCATCCATTGTATTCATAATGAGTTTGTGAATTACCATTT
1 GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTT
4823591 TGTTACCTTA
Statistics
Matches: 143, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 143 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (53 bp):
GGCACTATGTGTGCATCCATGGTATTCATAATGAGTTTGTGAATTACCATTTC
Found at i:4824217 original size:24 final size:25
Alignment explanation
Indices: 4824160--4824217 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
4824150 ACTTTAAAGT
4824160 TATTTTA-TATAATATAGTTAATGAA
1 TATTTTATTATAATATAGTTAA-GAA
*
4824185 TGTTTTATTATTAATATA-TTAA-AA
1 TATTTTATTA-TAATATAGTTAAGAA
4824209 TATTTTATT
1 TATTTTATT
4824218 TATAGAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 10 0.34
25 6 0.21
26 6 0.21
27 7 0.24
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (25 bp):
TATTTTATTATAATATAGTTAAGAA
Found at i:4827783 original size:15 final size:15
Alignment explanation
Indices: 4827763--4827800 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
4827753 TTTTTCTTTT
4827763 TCTTCTTCTTCCTCC
1 TCTTCTTCTTCCTCC
4827778 TCTTCTTCTTCCTCC
1 TCTTCTTCTTCCTCC
4827793 TCTTCTTC
1 TCTTCTTC
4827801 GTCTCCATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTCTTCTTCCTCC
Found at i:4827943 original size:60 final size:60
Alignment explanation
Indices: 4827874--4827991 Score: 227
Period size: 60 Copynumber: 2.0 Consensus size: 60
4827864 GTGCCTGCTC
4827874 CGCTTCATTGATATTGCCTCGCCTCAGTGCCTTGGCACGCCTCAGCTGCGCCTTTTTATG
1 CGCTTCATTGATATTGCCTCGCCTCAGTGCCTTGGCACGCCTCAGCTGCGCCTTTTTATG
*
4827934 CGCTTCATTGATATTGCCTCGCCTCAGTGCCTTGGCACGCCTCAGTTGCGCCTTTTTA
1 CGCTTCATTGATATTGCCTCGCCTCAGTGCCTTGGCACGCCTCAGCTGCGCCTTTTTA
4827992 AACACAGGAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.12, C:0.33, G:0.21, T:0.34
Consensus pattern (60 bp):
CGCTTCATTGATATTGCCTCGCCTCAGTGCCTTGGCACGCCTCAGCTGCGCCTTTTTATG
Found at i:4828313 original size:24 final size:24
Alignment explanation
Indices: 4828286--4828345 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
4828276 GATAGGGTGT
*
4828286 ATATATGCAAATGGTGGGAGAATA
1 ATATATGCAAATGGTGGGAGAAGA
4828310 ATATATGCAAATGGTGGGAGAAGA
1 ATATATGCAAATGGTGGGAGAAGA
4828334 ATATATGCAAAT
1 ATATATGCAAAT
4828346 AGGGAATACT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.25
Consensus pattern (24 bp):
ATATATGCAAATGGTGGGAGAAGA
Found at i:4829440 original size:39 final size:39
Alignment explanation
Indices: 4829392--4829472 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
4829382 TTCATAATTT
*
4829392 ATAAATACACTAATTAGTGATTTAAACTCGTCATTATAA
1 ATAAATACACTAATTAGTGATTTAAACTCATCATTATAA
4829431 ATAAATACACTAATTAGTGATTTAAACTCATCATTATAA
1 ATAAATACACTAATTAGTGATTTAAACTCATCATTATAA
4829470 ATA
1 ATA
4829473 TTTGGTTCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (39 bp):
ATAAATACACTAATTAGTGATTTAAACTCATCATTATAA
Found at i:4830971 original size:54 final size:54
Alignment explanation
Indices: 4830853--4831164 Score: 326
Period size: 54 Copynumber: 5.8 Consensus size: 54
4830843 TCAACTCTTT
* * * * *
4830853 CATAACAAAGGAAC-ATCAAAGCTCACTC-AGTCTC-AAAATCTGCTCTACTCATC
1 CATAACAAAGGAACGCT-AGAGCTTACTCGA-TCTCAAAAATTTGCTCTACTCCTC
* * * * *
4830906 CATAACAAAGGAATGCTAAAGCATACTGGATCTCAAAATTTTGCTCTACTCCTC
1 CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAATTTGCTCTACTCCTC
* ** * *
4830960 CATAACAAAGGAACGCTAGAGCTTACTCGGTCTTTAAAGTTTCCTCTACTCCTC
1 CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAATTTGCTCTACTCCTC
* * * * * *
4831014 CATGACAAAAGAACGCTAGAGCTTACTCTATTTTAAAAATTTGCTCTAATCCTC
1 CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAATTTGCTCTACTCCTC
* ** **
4831068 CATAACAAAGGAATGCTAGAGCTTACTAAATCTTGAAAATCTT-CTCTACTCCTC
1 CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAAT-TTGCTCTACTCCTC
*
4831122 CATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTG
1 CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAATTTG
4831165 ATCTTATGAT
Statistics
Matches: 214, Mismatches: 40, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
53 27 0.13
54 185 0.86
55 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (54 bp):
CATAACAAAGGAACGCTAGAGCTTACTCGATCTCAAAAATTTGCTCTACTCCTC
Found at i:4831057 original size:108 final size:108
Alignment explanation
Indices: 4830887--4831164 Score: 369
Period size: 108 Copynumber: 2.6 Consensus size: 108
4830877 ACTCAGTCTC
* * * * * *
4830887 AAAATCTGCTCTACTCATCCATAACAAAGGAATGCTAAAGCATACTGGATCTCAAAATTTTGCTC
1 AAAATCTTCTCTACTCCTCCATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTGCTC
* *** *
4830952 TACTCCTCCATAACAAAGGAACGCTAGAGCTTACTCGGTCTTT
66 TAATCCTCCATAACAAAGGAACGCTAGAGCTTACTAAATCTTG
* * * * * * *
4830995 AAAGT-TTCCTCTACTCCTCCATGACAAAAGAACGCTAGAGCTTACTCTATTTTAAAAATTTGCT
1 AAAATCTT-CTCTACTCCTCCATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTGCT
*
4831059 CTAATCCTCCATAACAAAGGAATGCTAGAGCTTACTAAATCTTG
65 CTAATCCTCCATAACAAAGGAACGCTAGAGCTTACTAAATCTTG
4831103 AAAATCTTCTCTACTCCTCCATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTG
1 AAAATCTTCTCTACTCCTCCATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTG
4831165 ATCTTATGAT
Statistics
Matches: 142, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
107 1 0.01
108 139 0.98
109 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (108 bp):
AAAATCTTCTCTACTCCTCCATAACAAAGGAACGCTAAAGCTTACTCGATCTCAAAAATTTGCTC
TAATCCTCCATAACAAAGGAACGCTAGAGCTTACTAAATCTTG
Found at i:4831833 original size:16 final size:16
Alignment explanation
Indices: 4831812--4831879 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 16
4831802 AATATTTGTT
4831812 TCAAGGGAAACAAGTC
1 TCAAGGGAAACAAGTC
*
4831828 TCAAGGGAGATAAAATCAATGTT
1 TCAA-GG-G---AAA-CAA-GTC
4831851 TCAAGGGAAACAAGTC
1 TCAAGGGAAACAAGTC
*
4831867 TCAAGGGAGACAA
1 TCAAGGGAAACAA
4831880 AATCAGTGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
16 18 0.43
17 5 0.12
18 4 0.10
21 4 0.10
22 5 0.12
23 6 0.14
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.16
Consensus pattern (16 bp):
TCAAGGGAAACAAGTC
Found at i:4831854 original size:39 final size:39
Alignment explanation
Indices: 4831710--4832158 Score: 485
Period size: 39 Copynumber: 11.4 Consensus size: 39
4831700 AGAAGCAATA
* ** * **
4831710 TCAAGGGAGATAAAATTGATGTTTCAAGAGAAATTA-TC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
* * * * *
4831748 TCAAGGAAGATAAAATCAGTGTTTCAAGGGAAAATAATTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGG-AAACAAGTC
*
4831788 TCAAGGGAGACAAAAAT-ATTTGTTTCAAGGGAAACAAGTC
1 TCAAGGGAGAC-AAAATCA-ATGTTTCAAGGGAAACAAGTC
*
4831828 TCAAGGGAGATAAAATCAATGTTTCAAGGGAAACAAGTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
*
4831867 TCAAGGGAGACAAAATCAGTGTTTCAAGGGAAACAAGTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
* * * *
4831906 TCAGAGGG-GACAAAAAT-ATTTGTTTCAAGAGAAATAGGTC
1 TCA-AGGGAGAC-AAAATCA-ATGTTTCAAGGGAAACAAGTC
4831946 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
** ** * * **
4831985 TCAAATGAGACAAAAATCTTTGTTTAAAGAGAAACTTGTC
1 TCAAGGGAGAC-AAAATCAATGTTTCAAGGGAAACAAGTC
4832025 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
* *
4832064 TCAAGGGAGACAAAATCAGTGTTTCAAGGTAAACAAGTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
* * ** *
4832103 TCAAGGTAGAAAAAAATCTTTATTTCAAGGGAAACGAA-TC
1 TCAAGGGAG-ACAAAATCAATGTTTCAAGGGAAAC-AAGTC
4832143 TCAAGGGAGACAAAAT
1 TCAAGGGAGACAAAAT
4832159 ATTTATAGGA
Statistics
Matches: 349, Mismatches: 49, Indels: 25
0.83 0.12 0.06
Matches are distributed among these distances:
38 25 0.07
39 182 0.52
40 124 0.36
41 18 0.05
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (39 bp):
TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTC
Found at i:4831858 original size:23 final size:22
Alignment explanation
Indices: 4831828--4831897 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 22
4831818 GAAACAAGTC
4831828 TCAAGGGAGATAAAATCAATGTT
1 TCAAGGGAGA-AAAATCAATGTT
*
4831851 TCAA-GG-G--AAA-CAA-GTC
1 TCAAGGGAGAAAAATCAATGTT
*
4831867 TCAAGGGAGACAAAATCAGTGTT
1 TCAAGGGAGA-AAAATCAATGTT
4831890 TCAAGGGA
1 TCAAGGGA
4831898 AACAAGTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
16 6 0.16
17 5 0.14
18 4 0.11
21 4 0.11
22 4 0.11
23 14 0.38
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (22 bp):
TCAAGGGAGAAAAATCAATGTT
Found at i:4831878 original size:79 final size:78
Alignment explanation
Indices: 4831710--4832158 Score: 476
Period size: 79 Copynumber: 5.7 Consensus size: 78
4831700 AGAAGCAATA
* ** * ** * *
4831710 TCAAGGGAGATAAAATTGATGTTTCAAGAGAAATTA-TCTCAAGGAAGATAAAATCAGTGTTTCA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGAAAAAATCAGTGTTTCA
* *
4831774 AGGGAAAATAATTC
66 AGGG-AAACAAGTC
* * *
4831788 TCAAGGGAGACAAAAAT-ATTTGTTTCAAGGGAAACAAGTCTCAAGGGAGATAAAATCAATGTTT
1 TCAAGGGAGAC-AAAATCA-ATGTTTCAAGGGAAACAAGTCTCAAGGGAGAAAAAATCAGTGTTT
4831852 CAAGGGAAACAAGTC
64 CAAGGGAAACAAGTC
* *
4831867 TCAAGGGAGACAAAATCAGTGTTTCAAGGGAAACAAGTCTCAGAGGG-GACAAAAAT-ATTTGTT
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCA-AGGGAGA-AAAAATCA-GTGTT
* * *
4831930 TCAAGAGAAATAGGTC
63 TCAAGGGAAACAAGTC
** ** *
4831946 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAATGAGACAAAAATCTTTGTTTA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGA-AAAAATCAGTGTTTC
* **
4832011 AAGAGAAACTTGTC
65 AAGGGAAACAAGTC
*
4832025 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGACAAAATCAGTGTTTCA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGAAAAAATCAGTGTTTCA
*
4832090 AGGTAAACAAGTC
66 AGGGAAACAAGTC
* * ** * *
4832103 TCAAGGTAGAAAAAAATCTTTATTTCAAGGGAAACGAA-TCTCAAGGGAGACAAAAT
1 TCAAGGGAG-ACAAAATCAATGTTTCAAGGGAAAC-AAGTCTCAAGGGAGAAAAAAT
4832159 ATTTATAGGA
Statistics
Matches: 321, Mismatches: 39, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
78 72 0.22
79 217 0.68
80 32 0.10
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (78 bp):
TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGAAAAAATCAGTGTTTCA
AGGGAAACAAGTC
Found at i:4831918 original size:118 final size:117
Alignment explanation
Indices: 4831710--4832162 Score: 536
Period size: 118 Copynumber: 3.8 Consensus size: 117
4831700 AGAAGCAATA
* ** * ** * *
4831710 TCAAGGGAGATAAAATTGATGTTTCAAGAGAAATTA-TCTCAAGGAAGATAAAATCAGTGTTTCA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGACAAAATCAGTGTTTCA
* *
4831774 AGGGAAAATAATTCTCAAGGGAGACAAAAATATTTGTTTCAAGGGAAACAAGTC
66 AGGG-AAACAAGTCTCAAGGGAGAC-AAAATATTTGTTTCAAGGGAAACAAGTC
*
4831828 TCAAGGGAGATAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGACAAAATCAGTGTTTCA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGACAAAATCAGTGTTTCA
* * *
4831893 AGGGAAACAAGTCTCAGAGGG-GACAAAAATATTTGTTTCAAGAGAAATAGGTC
66 AGGGAAACAAGTCTCA-AGGGAGAC-AAAATATTTGTTTCAAGGGAAACAAGTC
** ** *
4831946 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAATGAGACAAAAATCTTTGTTTA
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGAC-AAAATCAGTGTTTC
* ** *
4832011 AAGAGAAACTTGTCTCAAGGGAGACAAAATCA-ATGTTTCAAGGGAAACAAGTC
65 AAGGGAAACAAGTCTCAAGGGAGACAAAAT-ATTTGTTTCAAGGGAAACAAGTC
* * * * ** *
4832064 TCAAGGGAGACAAAATCAGTGTTTCAAGGTAAACAAGTCTCAAGGTAGAAAAAAATCTTTATTTC
1 TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAG-ACAAAATCAGTGTTTC
4832129 AAGGGAAACGAA-TCTCAAGGGAGACAAAATATTT
65 AAGGGAAAC-AAGTCTCAAGGGAGACAAAATATTT
4832163 ATAGGAATCT
Statistics
Matches: 290, Mismatches: 37, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
117 1 0.00
118 225 0.78
119 64 0.22
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.23
Consensus pattern (117 bp):
TCAAGGGAGACAAAATCAATGTTTCAAGGGAAACAAGTCTCAAGGGAGACAAAATCAGTGTTTCA
AGGGAAACAAGTCTCAAGGGAGACAAAATATTTGTTTCAAGGGAAACAAGTC
Found at i:4832055 original size:23 final size:23
Alignment explanation
Indices: 4832025--4832092 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
4832015 GAAACTTGTC
4832025 TCAAGGGAGACAAAATCAATGTT
1 TCAAGGGAGACAAAATCAATGTT
*
4832048 TCAA-GG-G---AAA-CAA-GTC
1 TCAAGGGAGACAAAATCAATGTT
*
4832064 TCAAGGGAGACAAAATCAGTGTT
1 TCAAGGGAGACAAAATCAATGTT
4832087 TCAAGG
1 TCAAGG
4832093 TAAACAAGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
16 6 0.17
17 5 0.14
18 4 0.11
21 4 0.11
22 4 0.11
23 12 0.34
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (23 bp):
TCAAGGGAGACAAAATCAATGTT
Found at i:4833165 original size:76 final size:75
Alignment explanation
Indices: 4833062--4833225 Score: 204
Period size: 76 Copynumber: 2.2 Consensus size: 75
4833052 TAAACTCAAG
* * * * **
4833062 TTTAGGATAATCTTTTAAATATTATATTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTATT
1 TTTAGGATATTATTTTAAATATTATATTTTGTATAGGTATTTTAGTTTAAATAGGTTTTAGTATT
*
4833127 TTAATTAAGT
66 TTAATTAAGA
* *
4833137 TTTAGGATATTATTTT-TATATTTTATATTTGTTATAGGTATTTTAGTTTAAATAGGTTTTAGTA
1 TTTAGGATATTATTTTAAATATTATAT-TTTG-TATAGGTATTTTAGTTTAAATAGGTTTTAGTA
*
4833201 TTTTAATTAGGA
64 TTTTAATTAAGA
*
4833213 TTTAGAATATTAT
1 TTTAGGATATTAT
4833226 ATTTGTTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
74 8 0.11
75 17 0.22
76 51 0.67
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.56
Consensus pattern (75 bp):
TTTAGGATATTATTTTAAATATTATATTTTGTATAGGTATTTTAGTTTAAATAGGTTTTAGTATT
TTAATTAAGA
Found at i:4833211 original size:19 final size:19
Alignment explanation
Indices: 4833107--4833217 Score: 61
Period size: 19 Copynumber: 5.8 Consensus size: 19
4833097 TGTATTTTAG
*
4833107 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
*
4833126 TTTAATTAAGTTTTAGGATAT
1 TTTAATTAGGTTTTA-G-TAT
* **
4833147 TATT-TTTATATTTTA-TAT
1 T-TTAATTAGGTTTTAGTAT
* *
4833165 TTGTTA-TAGGTATTT--TAG
1 TT-TAATTAGGT-TTTAGTAT
*
4833183 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
*
4833202 TTTAATTAGGATTTAG
1 TTTAATTAGGTTTTAG
4833218 AATATTATAT
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
17 6 0.09
18 17 0.24
19 32 0.46
20 1 0.01
21 12 0.17
22 2 0.03
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:4833227 original size:63 final size:63
Alignment explanation
Indices: 4833159--4833279 Score: 181
Period size: 63 Copynumber: 1.9 Consensus size: 63
4833149 TTTTTATATT
*
4833159 TTATATTTGTTATAGGTATTTTAGTTTAAATAGGTTT-TAGTATTTTAATTAGGATTTAGAATA
1 TTATATTTGTTATAGGTATTTTAGTTTAAATA-GTTTCAAGTATTTTAATTAGGATTTAGAATA
* * * *
4833222 TTATATTTGTTTTCGGTATTTTAGTTTAAATAGTTTCAAGTGTTTTAATTATGATTTA
1 TTATATTTGTTATAGGTATTTTAGTTTAAATAGTTTCAAGTATTTTAATTAGGATTTA
4833280 AGATGTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
62 4 0.08
63 48 0.92
ACGTcount: A:0.29, C:0.02, G:0.15, T:0.55
Consensus pattern (63 bp):
TTATATTTGTTATAGGTATTTTAGTTTAAATAGTTTCAAGTATTTTAATTAGGATTTAGAATA
Found at i:4833956 original size:16 final size:15
Alignment explanation
Indices: 4833935--4833971 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
4833925 ATCATTTTTT
4833935 ATATTTATTACTATTA
1 ATATTTATTA-TATTA
4833951 ATATTTATTATATTA
1 ATATTTATTATATTA
*
4833966 TTATTT
1 ATATTT
4833972 TTCTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTTATTATATTA
Found at i:4836789 original size:5 final size:5
Alignment explanation
Indices: 4836776--4836838 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 5
4836766 GAGGCAACCC
* * * **
4836776 ATTTC ATTTT ATTTT CATTTT A-TTT A-TCT ATTTC ATTCC A-TTT ATTTT
1 ATTTT ATTTT ATTTT -ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
4836824 ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT
4836839 TCTATGAACA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
4 9 0.19
5 34 0.71
6 5 0.10
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.70
Consensus pattern (5 bp):
ATTTT
Found at i:4838588 original size:19 final size:19
Alignment explanation
Indices: 4838484--4838588 Score: 58
Period size: 19 Copynumber: 5.5 Consensus size: 19
4838474 TGTATTTTAG
*
4838484 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
*
4838503 TTTAATTAAGTTTTAGGATAT
1 TTTAATTAGGTTTTA-G-TAT
* **
4838524 TATT-TTTATATTTTA-TAT
1 T-TTAATTAGGTTTTAGTAT
* *
4838542 TTGT-TTTAGGTGTTT--TAG
1 TT-TAATTAGGT-TTTAGTAT
*
4838560 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
4838579 TTTAATTAGG
1 TTTAATTAGG
4838589 AATTAGAATA
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
17 5 0.08
18 19 0.29
19 27 0.41
20 1 0.02
21 12 0.18
22 2 0.03
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:4839260 original size:21 final size:22
Alignment explanation
Indices: 4839235--4839287 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
4839225 TATCTCGACC
*
4839235 TCTTTTATTTATTTATTTCTT-
1 TCTTTTATTTATTTAATTCTTA
4839256 TCTTTCT-TTTATTTAATTCTTA
1 TCTTT-TATTTATTTAATTCTTA
*
4839278 TTTTTTATTT
1 TCTTTTATTT
4839288 TAAAAACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.75
Consensus pattern (22 bp):
TCTTTTATTTATTTAATTCTTA
Found at i:4839453 original size:22 final size:21
Alignment explanation
Indices: 4839411--4839453 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4839401 GGAATTCTAT
* *
4839411 ATTTTTCTAAAATCAAGAAAC
1 ATTTTTATAAAATCAAAAAAC
*
4839432 ATTTTTATTAAATCATAAAAAC
1 ATTTTTATAAAATCA-AAAAAC
4839454 CATAGTCCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (21 bp):
ATTTTTATAAAATCAAAAAAC
Found at i:4851562 original size:54 final size:54
Alignment explanation
Indices: 4851465--4851853 Score: 308
Period size: 54 Copynumber: 7.3 Consensus size: 54
4851455 TCAACTCATT
* * * * *
4851465 CATAACAAAGGAACACCAAAACTTACTCGGA-CTAAAAAATTTGCTCTACTCCTC
1 CATAACAAAGGAACGCTAAAGCTTACTC-GATCTTAAAATTTTGCTCTACTCCTC
* * * *
4851519 CATAACCAAGGAACGCCAAAGCTTACTCAATCTCAAAATTTTGCTCTACTCCTC
1 CATAACAAAGGAACGCTAAAGCTTACTCGATCTTAAAATTTTGCTCTACTCCTC
*** * * * * * * *
4851573 CATTTTAAAGGAACACTAGAGCTTACTCGGTCTTTAAAGTTTACTCTATTCCTC
1 CATAACAAAGGAACGCTAAAGCTTACTCGATCTTAAAATTTTGCTCTACTCCTC
* * * * * * *
4851627 CATGACAAAAGAACACTAAAGTTTACTCGATTTTAAAAATTTGTTCTACT-CT-
1 CATAACAAAGGAACGCTAAAGCTTACTCGATCTTAAAATTTTGCTCTACTCCTC
* * *
4851679 -ATAACAAAGGAATGCTAAAGCTTACTCG-GCTTTGGAAATTTT-CTCTACTCCTC
1 CATAACAAAGGAACGCTAAAGCTTACTCGATC-TT-AAAATTTTGCTCTACTCCTC
* * * * ** * * *
4851732 TATAACAAAGGAATGTTAGAGCTTACTAAATCTTTAAATTTTTCT-TCACTGCTC
1 CATAACAAAGGAACGCTAAAGCTTACTCGATCTTAAAATTTTGCTCT-ACTCCTC
* * *
4851786 CATAACAAAGGAACGCTAGAGCTTACTCGGTCTTGAAAA-TTTGTTCTACTCCTC
1 CATAACAAAGGAACGCTAAAGCTTACTCGATCTT-AAAATTTTGCTCTACTCCTC
4851840 CATAACAAAGGAAC
1 CATAACAAAGGAAC
4851854 ATAACGTATT
Statistics
Matches: 264, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
51 31 0.12
52 8 0.03
53 11 0.04
54 209 0.79
55 5 0.02
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (54 bp):
CATAACAAAGGAACGCTAAAGCTTACTCGATCTTAAAATTTTGCTCTACTCCTC
Found at i:4855961 original size:14 final size:14
Alignment explanation
Indices: 4855942--4855968 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4855932 TATTCACAAC
4855942 TTCATTTTTTTTCT
1 TTCATTTTTTTTCT
4855956 TTCATTTTTTTTC
1 TTCATTTTTTTTC
4855969 ATTTTAGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (14 bp):
TTCATTTTTTTTCT
Found at i:4866302 original size:20 final size:20
Alignment explanation
Indices: 4866277--4866314 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4866267 CTTGGGTAAG
*
4866277 CTAGAGAGGTTTTTGTGCTT
1 CTAGAGAGATTTTTGTGCTT
4866297 CTAGAGAGATTTTTGTGC
1 CTAGAGAGATTTTTGTGC
4866315 CACTAGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.11, G:0.29, T:0.42
Consensus pattern (20 bp):
CTAGAGAGATTTTTGTGCTT
Found at i:4866320 original size:20 final size:20
Alignment explanation
Indices: 4866277--4866321 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4866267 CTTGGGTAAG
* **
4866277 CTAGAGAGGTTTTTGTGCTT
1 CTAGAGAGATTTTTGTGCCA
4866297 CTAGAGAGATTTTTGTGCCA
1 CTAGAGAGATTTTTGTGCCA
4866317 CTAGA
1 CTAGA
4866322 AGTTGAGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
CTAGAGAGATTTTTGTGCCA
Found at i:4868130 original size:93 final size:95
Alignment explanation
Indices: 4867968--4868143 Score: 241
Period size: 94 Copynumber: 1.9 Consensus size: 95
4867958 ATACTGACTA
* * * * * **
4867968 GGTAGTATCGGTACCATGGTAAGGGTATCGATACCAGGAAAATATCGAATCTAAAACTGGTATCG
1 GGTAGTATCGATACAATCGTAAGGGTATCGATACCAGGAAAACATCGAAACTAAAACTGACATCG
*
4868033 ATACCAGAA-GGGGTATCGTATCATAATAT
66 ATACCAAAAGGGGGTATCGTATCATAATAT
*
4868062 GGTAGTATCGATACAATCGTAAGGGTATCGATACCTA-G-AAACATCGAAACTAAAATTGACATC
1 GGTAGTATCGATACAATCGTAAGGGTATCGATACC-AGGAAAACATCGAAACTAAAACTGACATC
4868125 GATACCAAAAGGGGGTATC
65 GATACCAAAAGGGGGTATC
4868144 ATTACCATAG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
93 29 0.41
94 41 0.58
95 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (95 bp):
GGTAGTATCGATACAATCGTAAGGGTATCGATACCAGGAAAACATCGAAACTAAAACTGACATCG
ATACCAAAAGGGGGTATCGTATCATAATAT
Found at i:4869001 original size:68 final size:68
Alignment explanation
Indices: 4868888--4869280 Score: 507
Period size: 68 Copynumber: 5.8 Consensus size: 68
4868878 AAAGATTAAT
* * * * *
4868888 AGGCCTAACTATTCATTTGACAGAAAGGTGTCATTTAAGGCAGTTAGATGAAAGACTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
4868953 TTG
66 TTG
* * ** *
4868956 AGGTCTAACTGTGCATTTGGCAGAAAGGTGTTGTTTATGCCAGTTAGATAAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
4869021 TTG
66 TTG
* *
4869024 AGGCTTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
4869089 TTG
66 TTG
* * * * * *
4869092 AGGCCTAACTGTGAATTTGATAGAAATGTGTCATTTATTCTAGTTAGATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
4869157 TTG
66 TTG
* * * * *
4869160 AAGCCTAATTGTGCATTTGAAAGAAAGGTGTCATTTATGCCACTTAGATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
4869225 TTG
66 TTG
* * * * * * *
4869228 AGGCCTAACTGTGCAAATGGTCAGAATGGTGTCAATTATGTCAGTTATATGAA
1 AGGCCTAACTGTGC-ATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
4869281 CAGTTAAATA
Statistics
Matches: 280, Mismatches: 44, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
68 251 0.90
69 29 0.10
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:4869345 original size:81 final size:81
Alignment explanation
Indices: 4869230--4869553 Score: 483
Period size: 81 Copynumber: 4.0 Consensus size: 81
4869220 TTCCTTTGAG
* * * * *
4869230 GCCTAACTGTGCAAATGGTCAGAATGGTGTCAATTATGTCAGTTATATGAACAGTTAAATA-TCG
1 GCCTAACTGTGCAATTGG-CAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAACACT-G
*
4869294 TTGAGTAAAATAATAATA
64 TTGAGTAAAAGAATAATA
* * * *
4869312 GCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATAAATAGTTAAATA-TCGT
1 GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAACACT-GT
4869376 TGAGTAAAAGAATAATA
65 TGAGTAAAAGAATAATA
* *
4869393 GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTAAGATGAACTGTTAAACACTGTT
1 GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAACACTGTT
4869458 GAGTAAAAGAATAATA
66 GAGTAAAAGAATAATA
4869474 GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAC-GATTAAACACTGT
1 GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAG-TTAAACACTGT
4869538 TGAGTAAAAGAATAAT
65 TGAGTAAAAGAATAAT
4869554 GTATTAGTTG
Statistics
Matches: 225, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
80 1 0.00
81 206 0.92
82 18 0.08
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.28
Consensus pattern (81 bp):
GCCTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAACACTGTT
GAGTAAAAGAATAATA
Found at i:4869604 original size:81 final size:81
Alignment explanation
Indices: 4869232--4869604 Score: 389
Period size: 81 Copynumber: 4.6 Consensus size: 81
4869222 CCTTTGAGGC
* * * * * * *
4869232 CTAACTGTGCAAATGGTCAGAATGGTGTCAATTATGTCAGTTATATGAACAGTTAAATA-TCGTT
1 CTAACTGTGC-AATTGACAGAAAGGTGTCAATTATGCCAGTTAAATGAACTGTTAAACACT-GTT
* *
4869296 GAGTAAAATAATAATAGC
64 GAGTAAAAGAATAATAGA
* * * * *
4869314 CTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGAT-AAATAGTTAAATA-TCGTT
1 CTAACTGTGCAATTGACAGAAAGGTGTCAATTATGCCAGTTAAATGAACT-GTTAAACACT-GTT
*
4869377 GAGTAAAAGAATAATAGC
64 GAGTAAAAGAATAATAGA
*
4869395 CTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAG-TAAGATGAACTGTTAAACACTGTTG
1 CTAACTGTGCAATTGACAGAAAGGTGTCAATTATGCCAGTTAA-ATGAACTGTTAAACACTGTTG
*
4869459 AGTAAAAGAATAATAGC
65 AGTAAAAGAATAATAGA
* *
4869476 CTAACTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAC-GATTAAACACTGTTG
1 CTAACTGTGCAATTGACAGAAAGGTGTCAATTATGCCAGTTAAATGAACTG-TTAAACACTGTTG
4869540 AGTAAAAGAATAAT-GTA
65 AGTAAAAGAATAATAG-A
* ** * * * * * *
4869557 TTAGTTGTGTATTTGACAGAAAAGCGTCAAATATGCAAGTTAAATGAA
1 CTAACTGTGCAATTGACAGAAAGGTGTCAATTATGCCAGTTAAATGAA
4869605 AAGCTAAATA
Statistics
Matches: 258, Mismatches: 26, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
80 6 0.02
81 236 0.91
82 16 0.06
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.29
Consensus pattern (81 bp):
CTAACTGTGCAATTGACAGAAAGGTGTCAATTATGCCAGTTAAATGAACTGTTAAACACTGTTGA
GTAAAAGAATAATAGA
Found at i:4869632 original size:162 final size:161
Alignment explanation
Indices: 4869270--4869633 Score: 430
Period size: 162 Copynumber: 2.2 Consensus size: 161
4869260 CAATTATGTC
* * *
4869270 AGTTATATGAACAGTTAAATATCGTTGAGTAAAATAATAATAGCCTAACTGTGCAATTGGCAGAA
1 AGTTAAATGAACAGTTAAATA-CTTTGAGTAAAAGAATAATAGCCTAACTGTGCAATTGGCAGAA
* * * *
4869335 ATGTGTCAATTATGCCAGTTAGATAAATAGTTAAATATCGTTGAGTAAAAGAATAATAGCCTAAC
65 AGGTGTCAATTATGCCAGTTAGATAAAGAGTTAAACATCGTTGAGTAAAAGAATAATAGACTAAC
* * * * *
4869400 TGTGCAATTGGCAGAAAGGTGTCAATTATGCC
130 TGTGCAATTGACAGAAAAGCGTCAAATATGCA
* *
4869432 AG-TAAGATGAACTGTTAAACACTGTTGAGTAAAAGAATAATAGCCTAACTGTGCAATTGGCAGA
1 AGTTAA-ATGAACAGTTAAATACT-TTGAGTAAAAGAATAATAGCCTAACTGTGCAATTGGCAGA
* *
4869496 AAGGTGTCAATTATGCCAGTTAGATGAACGA-TTAAACA-CTGTTGAGTAAAAGAATAAT-GTAT
64 AAGGTGTCAATTATGCCAGTTAGAT-AAAGAGTTAAACATC-GTTGAGTAAAAGAATAATAG-AC
** * *
4869558 TAGTTGTGTATTTGACAGAAAAGCGTCAAATATGCA
126 TAACTGTGCAATTGACAGAAAAGCGTCAAATATGCA
* * *
4869594 AGTTAAATGAAAAGCTAAATACTTTGAGGTAGAAGAATAA
1 AGTTAAATGAACAGTTAAATACTTTGA-GTAAAAGAATAA
4869634 AGGAATTATA
Statistics
Matches: 170, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
161 9 0.05
162 155 0.91
163 6 0.04
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (161 bp):
AGTTAAATGAACAGTTAAATACTTTGAGTAAAAGAATAATAGCCTAACTGTGCAATTGGCAGAAA
GGTGTCAATTATGCCAGTTAGATAAAGAGTTAAACATCGTTGAGTAAAAGAATAATAGACTAACT
GTGCAATTGACAGAAAAGCGTCAAATATGCA
Found at i:4873812 original size:95 final size:95
Alignment explanation
Indices: 4873700--4873923 Score: 290
Period size: 95 Copynumber: 2.4 Consensus size: 95
4873690 ATATCAACTA
*
4873700 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAAACATCGAATCTAAAACTGGTATCG
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGG-AAACATCGAAACTAAAACTGGTATCG
* * **
4873765 ATAACAG-AAGGAGTATCGGTACCATAGTAT
65 ATAACAGAAAGGAGTATCGATACCACAAAAT
* * *
4873795 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGCAACATTGAAACTAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAAACTAAAACTGGTATCGA
* *
4873860 TACCAGAAAGGGGTATCGATACCACAAAAT
66 TAACAGAAAGGAGTATCGATACCACAAAAT
* * * *
4873890 AGAAGTATCGGTACCAGGGT-AGTGGTATCGATAC
1 GGTAGTATCGATACCATGGTAAG-GGTATCGATAC
4873924 TATTGAGCTT
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 30 0.27
95 83 0.73
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAAACTAAAACTGGTATCGA
TAACAGAAAGGAGTATCGATACCACAAAAT
Done.