genome.fa.s8084.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008084.1 Hibiscus syriacus cultivar Beakdansim tig00110592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114351

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4168--4199	2	16.0	2	100	0	64	50	0	0	50	1.00
5668--5692	2	12.5	2	100	0	50	52	0	0	48	1.00
21056--21221	60	2.8	60	82	4	185	33	18	4	43	1.71
34048--34105	28	2.0	29	83	9	75	50	1	0	48	1.11
34208--34258	23	2.2	23	82	0	57	45	1	1	50	1.24
34289--34351	26	2.4	25	77	15	65	49	3	1	46	1.27
34401--34509	8	13.5	8	71	8	51	44	0	0	54	1.06
34400--34436	16	2.3	16	95	0	65	35	0	0	64	0.94
34406--34480	13	6.1	13	69	12	59	45	0	0	54	0.99
34429--34466	14	2.6	16	80	20	55	55	0	0	44	0.99
34390--34450	24	2.6	24	78	2	79	47	0	0	52	1.00
34394--34482	16	5.6	16	76	11	58	44	0	0	55	0.99
34375--34482	53	2.0	52	81	10	121	48	0	0	51	1.00
34358--34510	48	3.3	48	70	21	130	47	0	0	51	1.05
35403--35670	137	2.0	136	81	5	317	38	12	13	35	1.82
38615--38654	21	1.9	21	89	0	62	27	0	17	55	1.43
38562--38693	28	4.7	28	77	14	130	28	0	16	54	1.48
39114--39139	4	6.5	4	100	0	52	23	0	23	53	1.46
41955--41992	14	2.7	14	87	0	58	42	2	10	44	1.52
42017--42101	21	4.2	21	64	17	54	41	0	11	47	1.40
42001--42164	60	2.8	60	88	2	244	45	0	8	45	1.38
42093--42127	18	1.9	18	88	0	52	51	0	5	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42056--42166	21	5.4	21	66	16	54	44	0	9	45	1.41
42297--42542	11	20.2	11	74	16	111	45	0	9	44	1.41
42498--42574	21	3.5	23	78	13	67	46	0	0	53	1.00
42354--42505	14	11.5	13	81	10	161	46	1	10	42	1.46
42519--42561	17	2.6	16	85	10	59	44	0	0	55	0.99
42514--42577	21	3.0	21	83	4	74	43	0	0	56	0.99
42533--42577	14	3.2	15	85	14	53	44	0	0	55	0.99
42668--42740	19	4.3	18	68	28	61	38	0	13	47	1.43
42656--42753	49	2.0	49	88	4	144	40	0	10	48	1.37
42736--42781	12	3.7	12	86	11	65	50	2	2	45	1.26
42812--42862	21	2.4	21	96	0	93	41	0	1	56	1.10
42812--42872	21	2.9	21	90	4	79	42	1	3	52	1.27
45156--45194	16	2.5	16	91	4	62	58	5	0	35	1.20
45243--45330	30	2.9	30	89	1	122	47	11	1	39	1.47
45247--45296	15	3.3	15	69	20	50	44	14	0	42	1.44
45409--45491	43	1.9	42	83	9	105	45	15	1	37	1.54
45407--45520	41	2.9	37	72	18	97	45	14	0	39	1.50
45530--45569	21	1.9	21	94	0	71	57	12	2	27	1.48
45769--45833	32	2.0	32	82	11	80	46	13	0	40	1.44
45334--46042	390	1.8	382	86	8	1015	47	13	1	37	1.52
45801--45910	44	2.6	41	84	5	130	48	11	0	39	1.46
46393--46453	29	2.1	29	93	0	104	18	39	26	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46476--46517	14	3.1	14	79	6	50	9	35	30	23	1.87
48558--48609	20	2.5	21	75	12	54	53	7	7	30	1.57
49881--50249	20	18.5	20	84	5	451	34	26	18	20	1.96
50931--50977	24	2.0	24	87	8	69	25	14	21	38	1.92
51152--51176	12	2.1	12	100	0	50	72	0	28	0	0.86
53458--53750	19	16.4	19	83	14	392	47	18	20	14	1.83
53486--53772	52	5.4	55	90	8	356	46	17	21	14	1.83
53458--53772	128	2.6	128	88	7	462	46	18	20	14	1.83
53779--53880	19	5.6	19	85	12	151	14	23	17	44	1.86
53987--54023	14	2.6	14	91	0	65	45	21	0	32	1.52
55979--56035	14	3.7	14	77	20	60	45	22	21	10	1.82
55960--56052	33	2.8	33	95	0	168	47	21	20	10	1.80
55923--56057	19	7.6	19	76	16	128	45	23	19	11	1.82
56053--56181	19	7.3	19	75	17	125	8	17	28	45	1.77
56053--56144	33	2.8	33	93	3	150	7	18	28	45	1.76
56225--56693	93	5.1	93	96	2	885	46	18	12	22	1.83
56225--56693	183	2.6	185	98	1	899	46	18	12	22	1.83
58390--58503	33	3.5	33	95	0	210	44	21	24	9	1.82
58397--58503	14	6.4	18	71	25	85	43	22	24	9	1.82
58499--58563	19	3.7	19	74	19	77	10	23	21	44	1.83
58521--58575	14	3.6	14	73	21	56	9	25	23	41	1.83
58504--58575	33	2.2	33	100	0	144	9	23	22	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58513--58597	33	2.5	33	90	1	125	10	25	21	42	1.85
58528--58616	20	4.8	20	72	19	75	12	24	19	43	1.85
58696--58766	33	2.2	33	92	0	115	47	18	22	11	1.80
58948--59002	22	2.5	22	81	0	74	20	16	40	23	1.91
59148--59340	20	9.6	20	82	5	219	19	19	25	35	1.95
59148--59340	60	3.2	60	83	0	251	19	19	25	35	1.95
59396--59447	20	2.6	20	96	0	95	21	13	26	38	1.90
59702--59755	23	2.3	24	96	3	101	46	0	5	48	1.25
62776--62834	23	2.6	23	72	0	64	54	15	8	22	1.68
86110--86195	26	3.3	26	93	3	147	39	23	13	23	1.90
87478--87524	23	2.2	20	85	11	58	51	2	0	46	1.13
87497--87532	18	1.9	19	88	5	56	52	2	0	44	1.15
88011--88065	12	4.8	12	91	4	87	25	18	23	32	1.97
89190--89229	16	2.5	16	91	0	62	15	12	15	57	1.66
95612--95640	14	2.1	14	100	0	58	48	0	0	51	1.00
97084--97117	15	2.3	15	89	0	50	47	17	17	17	1.84
98440--98510	26	2.5	30	78	17	80	61	1	1	35	1.13
100708--100772	29	2.3	30	84	7	82	26	7	3	63	1.36
101304--101330	13	2.1	13	100	0	54	51	7	14	25	1.68
101380--101435	27	2.1	27	100	0	112	48	7	0	44	1.30
105633--105663	3	10.0	3	93	6	53	64	0	0	35	0.94
105804--105843	2	20.0	2	100	0	80	50	0	0	50	1.00

Tables:   1

The End!