genome.fa.s8085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008085.1 Hibiscus syriacus cultivar Beakdansim tig00110594_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57706

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3053--3180	13	9.9	14	71	24	77	72	8	17	0	1.14
3088--3126	17	2.3	18	91	8	64	71	7	20	0	1.10
3109--3153	22	2.1	21	91	4	72	75	6	17	0	1.01
3109--3153	21	2.1	22	91	4	74	75	6	17	0	1.01
3051--3167	39	3.0	40	76	16	127	72	8	17	0	1.14
3054--3180	67	1.9	67	83	16	169	73	7	18	0	1.12
4370--4454	38	2.3	37	86	9	120	31	16	11	40	1.85
4442--4485	21	2.0	22	83	12	56	43	9	9	38	1.68
4606--4692	36	2.5	36	87	7	126	39	19	6	34	1.79
4606--4718	36	3.1	36	86	7	122	36	18	8	36	1.82
5851--5882	3	10.7	3	93	0	55	34	28	0	37	1.57
7561--7617	30	1.9	30	85	0	78	17	7	14	61	1.54
7653--7775	59	2.1	60	80	4	133	17	14	7	60	1.57
7684--7833	59	2.5	58	80	7	151	18	15	8	58	1.60
7694--7814	30	4.0	30	78	3	100	19	14	8	57	1.61
22691--22747	23	2.5	23	100	0	114	54	3	0	42	1.17
23975--24057	37	2.3	36	84	12	100	46	20	0	32	1.51
24005--24072	35	1.9	35	82	5	84	44	26	1	27	1.63
24364--24393	15	2.0	15	93	0	51	60	10	3	26	1.45
24555--24900	148	2.3	148	92	0	566	48	8	6	36	1.60
25088--25183	35	2.7	35	86	0	120	30	1	27	41	1.63
26305--26404	49	2.1	48	82	1	119	35	3	6	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28571--28622	20	2.6	20	96	0	95	38	26	13	21	1.90
28612--28710	21	4.8	20	72	6	72	36	23	19	21	1.95
28677--28870	20	9.6	20	81	5	221	35	25	19	19	1.95
28677--28870	60	3.2	60	83	0	253	35	25	19	19	1.95
29253--29323	33	2.2	33	92	0	115	11	22	18	47	1.80
29444--29498	14	3.6	14	73	21	56	41	23	25	9	1.83
29444--29514	33	2.2	33	94	0	124	43	25	22	8	1.81
29510--29607	19	5.7	19	70	22	81	10	24	22	42	1.84
29532--29621	14	5.7	14	74	23	81	8	25	23	42	1.83
29515--29629	33	3.5	33	95	0	212	9	24	20	45	1.81
31326--31701	183	2.0	184	97	2	713	22	12	18	46	1.83
31326--31701	93	4.1	93	97	2	717	22	12	18	46	1.83
31744--31872	19	7.3	19	73	17	116	46	28	16	8	1.76
31780--31872	33	2.8	32	88	4	141	47	27	17	7	1.74
31744--31872	52	2.5	52	73	14	131	46	28	16	8	1.76
31868--32002	19	7.6	19	73	16	119	11	19	22	46	1.81
31890--31946	14	3.7	14	77	20	60	10	21	22	45	1.82
31873--31965	33	2.8	33	95	0	168	10	20	21	47	1.80
33811--33883	38	1.9	38	97	0	137	28	1	16	53	1.51
33806--33870	19	3.4	19	64	8	51	24	1	15	58	1.46
33865--33900	14	2.6	14	95	0	63	33	0	22	44	1.53
34007--34108	19	5.6	19	84	13	151	44	17	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34137--34462	19	18.4	19	80	15	405	14	20	17	47	1.82
34115--34434	52	6.0	52	93	4	541	14	21	16	47	1.83
34137--34462	71	4.6	72	82	13	389	14	20	17	47	1.82
34115--34434	161	2.0	157	93	3	543	14	21	16	47	1.83
34156--34462	33	8.8	33	80	12	280	14	20	17	47	1.82
36763--36787	12	2.1	12	100	0	50	0	28	0	72	0.86
36962--37008	24	2.0	24	87	8	69	38	21	14	25	1.92
37679--38047	20	18.5	20	85	4	449	20	18	26	34	1.96
52915--52966	27	1.9	27	92	0	86	34	23	13	28	1.92
53053--53093	17	2.4	18	84	11	52	63	2	0	34	1.08
54759--54798	18	2.2	18	86	8	55	50	15	10	25	1.74
56549--56762	54	3.9	55	85	2	277	32	18	18	30	1.95

Tables:   1

The End!