Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 37
Found at i:4725457 original size:96 final size:96
Alignment explanation
Indices: 4725289--4725480 Score: 267
Period size: 96 Copynumber: 2.0 Consensus size: 96
4725279 TGCCCAGGAA
* * *
4725289 TACTCAAACCAGGAGATGAAACACTTCCTATTTCAGACCCAAGTTGTCTTTCTTCAGCACCAAGT
1 TACTCAAACCAGGAGATGAAACACTTCCTATTTCAGACCCAACTGGTCTTTCTTCAGCACCAAGA
* *
4725354 GAAGGAAAATCATGTTCGAACGCAGATTTAT
66 GAAGGAAAATCACGTTCAAACGCAGATTTAT
** ** * *
4725385 TACTCAAGTCAGGAGATGAAATGCTTCCTATTTCAGACCCCACTGGTTTTTCTTCAGCACCAAGA
1 TACTCAAACCAGGAGATGAAACACTTCCTATTTCAGACCCAACTGGTCTTTCTTCAGCACCAAGA
* *
4725450 GATGGAAAATCACGTTCAAATGCAGATTTAT
66 GAAGGAAAATCACGTTCAAACGCAGATTTAT
4725481 CATGGACAGC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (96 bp):
TACTCAAACCAGGAGATGAAACACTTCCTATTTCAGACCCAACTGGTCTTTCTTCAGCACCAAGA
GAAGGAAAATCACGTTCAAACGCAGATTTAT
Found at i:4727745 original size:15 final size:14
Alignment explanation
Indices: 4727725--4727772 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
4727715 TGTTTAATAA
*
4727725 TTTTTACGTTATACT
1 TTTTTAAGTTATA-T
*
4727740 TTTTTATGTTTATAT
1 TTTTTAAG-TTATAT
*
4727755 TTTTGAAGTTATAT
1 TTTTTAAGTTATAT
4727769 TTTT
1 TTTT
4727773 AGGTGTTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 10 0.34
15 14 0.48
16 5 0.17
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.67
Consensus pattern (14 bp):
TTTTTAAGTTATAT
Found at i:4727767 original size:30 final size:30
Alignment explanation
Indices: 4727715--4727772 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
4727705 TTTAAATAGG
*
4727715 TGTTTAATAATTTTTACGTTATACTTTTTTA
1 TGTTTAATAATTTTTAAGTTATA-TTTTTTA
4727746 TGTTT-AT-ATTTTTGAAGTTATATTTTT
1 TGTTTAATAATTTTT-AAGTTATATTTTT
4727773 AGGTGTTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 11 0.44
30 9 0.36
31 5 0.20
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.64
Consensus pattern (30 bp):
TGTTTAATAATTTTTAAGTTATATTTTTTA
Found at i:4728427 original size:30 final size:30
Alignment explanation
Indices: 4728391--4728458 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
4728381 TTAAAAAAAT
* * *
4728391 TACTTTAGATACTTAAAGTTAACTTTAGTA
1 TACTTTAAACACTTAAAGTTAACTTTACTA
*
4728421 TACTTTAAACATTTAAAGTTAACTTTACTA
1 TACTTTAAACACTTAAAGTTAACTTTACTA
4728451 TACTTTAA
1 TACTTTAA
4728459 GCATTTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (30 bp):
TACTTTAAACACTTAAAGTTAACTTTACTA
Found at i:4728464 original size:30 final size:30
Alignment explanation
Indices: 4728403--4728465 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
4728393 CTTTAGATAC
*
4728403 TTAAAGTTAACTTTAGTATACTTTAAACAT
1 TTAAAGTTAACTTTACTATACTTTAAACAT
*
4728433 TTAAAGTTAACTTTACTATACTTTAAGCAT
1 TTAAAGTTAACTTTACTATACTTTAAACAT
4728463 TTA
1 TTA
4728466 TTTTTGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.44
Consensus pattern (30 bp):
TTAAAGTTAACTTTACTATACTTTAAACAT
Found at i:4733028 original size:15 final size:15
Alignment explanation
Indices: 4733008--4733038 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4732998 CAACAGATAA
4733008 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
4733023 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
4733038 A
1 A
4733039 TTTAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:4747128 original size:13 final size:13
Alignment explanation
Indices: 4747091--4747120 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4747081 AGGTAATCTT
*
4747091 GGATGTATCCAAG
1 GGATCTATCCAAG
4747104 GGATCTATCCAAG
1 GGATCTATCCAAG
4747117 GGAT
1 GGAT
4747121 GCGTCCAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (13 bp):
GGATCTATCCAAG
Found at i:4760919 original size:22 final size:24
Alignment explanation
Indices: 4760884--4760928 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
4760874 TCACACAAAC
*
4760884 TCAATGAACACTAATGAT-CCATT
1 TCAATGAACACTAAAGATACCATT
*
4760907 TCAAT-AAGACTAAAGATACCAT
1 TCAATGAACACTAAAGATACCAT
4760929 CAACATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (24 bp):
TCAATGAACACTAAAGATACCATT
Found at i:4761018 original size:17 final size:18
Alignment explanation
Indices: 4760986--4761019 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4760976 AAACTTCATA
*
4760986 ATTTATTTATTTAAAACC
1 ATTTATTTACTTAAAACC
4761004 ATTTATTT-CTTAAAAC
1 ATTTATTTACTTAAAAC
4761020 ATAACAACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTATTTACTTAAAACC
Found at i:4764916 original size:12 final size:12
Alignment explanation
Indices: 4764895--4764926 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4764885 AGTAAGATCG
4764895 AAGCAATGGTTT
1 AAGCAATGGTTT
*
4764907 AAGCAGTGGTTT
1 AAGCAATGGTTT
4764919 AAGCAATG
1 AAGCAATG
4764927 AAGCAAGCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (12 bp):
AAGCAATGGTTT
Found at i:4771134 original size:54 final size:54
Alignment explanation
Indices: 4771050--4771176 Score: 177
Period size: 54 Copynumber: 2.4 Consensus size: 54
4771040 TCGAGACCAT
* * * *
4771050 ACAATTAATAGATAAATTAACTGTAGAACACATTGGATATGAGGGAAAATGGCC
1 ACAATTAACAGATAAATTAACTGTAAAACACATTGGATATGAAGCAAAATGGCC
*
4771104 ACAATTAACAGATAAATTAACTGTAAAACACATTGGATATGAAGCAATATGGCC
1 ACAATTAACAGATAAATTAACTGTAAAACACATTGGATATGAAGCAAAATGGCC
*
4771158 A-AATCT-ACACATAAATTAA
1 ACAAT-TAACAGATAAATTAA
4771177 TGCATTTTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 15 0.23
54 51 0.77
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.24
Consensus pattern (54 bp):
ACAATTAACAGATAAATTAACTGTAAAACACATTGGATATGAAGCAAAATGGCC
Found at i:4775333 original size:59 final size:59
Alignment explanation
Indices: 4775223--4775335 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 59
4775213 ATTGGGTGAA
* * * *
4775223 CATTTTGTAACTTTTAATAGTCAATGGATTCAAGAAAGCTACATCCTATAGTCGATGGT
1 CATTTTATAACTTTTAATAGTCAAGGGACTCAACAAAGCTACATCCTATAGTCGATGGT
* *
4775282 CATTTTATAATTTTTAATAGTCGAGGGACTCAACAAAG-TGACACTCC-ATAGTCG
1 CATTTTATAACTTTTAATAGTCAAGGGACTCAACAAAGCT-ACA-TCCTATAGTCG
4775336 GAGATCATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 1 0.02
59 42 0.91
60 3 0.07
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (59 bp):
CATTTTATAACTTTTAATAGTCAAGGGACTCAACAAAGCTACATCCTATAGTCGATGGT
Found at i:4783212 original size:14 final size:15
Alignment explanation
Indices: 4783190--4783236 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
4783180 TATAAGGTAA
*
4783190 TTTTGTTATAATT-T
1 TTTTATTATAATTAT
*
4783204 TTTTATTATACTTAT
1 TTTTATTATAATTAT
*
4783219 TGTTTATTATGATTAT
1 T-TTTATTATAATTAT
4783235 TT
1 TT
4783237 GAAAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.41
15 3 0.11
16 13 0.48
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTATAATTAT
Found at i:4783280 original size:23 final size:23
Alignment explanation
Indices: 4783221--4783280 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
4783211 ATACTTATTG
*
4783221 TTTATTATGATTATTTGAAAAAA
1 TTTATTATGATTATGTGAAAAAA
* *
4783244 TATTA-TAAGTTTATGTGTAAAAAA
1 T-TTATTATGATTATGTG-AAAAAA
4783268 TTTATTATG-TTAT
1 TTTATTATGATTAT
4783281 ATTTTCGTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (23 bp):
TTTATTATGATTATGTGAAAAAA
Found at i:4788985 original size:24 final size:24
Alignment explanation
Indices: 4788958--4789003 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
4788948 TACACAATTT
4788958 AAATACTAAAATA-AATAAAATACA
1 AAATA-TAAAATATAATAAAATACA
*
4788982 AAATATTAAATATAATAAAATA
1 AAATATAAAATATAATAAAATA
4789004 TACCTTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (24 bp):
AAATATAAAATATAATAAAATACA
Found at i:4808930 original size:182 final size:182
Alignment explanation
Indices: 4808623--4809842 Score: 1658
Period size: 182 Copynumber: 6.7 Consensus size: 182
4808613 TGTCGGTTTA
* * * * * * * * * *
4808623 TGTCGATACTTTATAAAAATGTATCGATCCATATCAATATATCAAGAAAAAATATGTCAAAACTG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
* * * * *
4808688 GTCATGAAAAGACAAAATCGGTAAAGCA-CTACCGGATATATTGCACGTGTCGATACTTTAATAT
66 GTCAGGAAAAGACAAAACCGGTAAAG-AGATACCGAATATATTGCAAGTGTCGATACTTTAATAT
* * * *
4808752 AAGTATCGACACATAGTGAATTTAAAGGTGAAGCAGTTTTAGTGCATATAAAG
130 AAGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
* **
4808805 TGTCGATTCTTTATAAATATGTATCGATCTACAACGATATAACATGTAAAAATATGACAAAATTG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
*
4808870 GTCAGGAAAAGACAAAACCGATAAAGAGATACCGAATATATTGCAAGTGTCGATACTTTAATATA
66 GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGAATATATTGCAAGTGTCGATACTTTAATATA
* *
4808935 AGTATCGACACATTGTGAATTTAAAGGAGAAACAATTTTAGCGCCTATAAAG
131 AGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
4808987 TGTCGATTCTTTATAAATATGTATTGATCCACAACAATATAACATGTAAAAATATGACAAAATCG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
* * * *
4809052 GTCAGGAAAATATAAAACCGGTAAAGAGATATC-AGATATATTGCAAGTATCGATACTTTAATAT
66 GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGA-ATATATTGCAAGTGTCGATACTTTAATAT
* *
4809116 AAGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCTCCTAGAAAG
130 AAGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
4809169 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
* * *
4809234 GTCAGGAAAAGATAAAACCGGTAAAGAGATATCGGATATATTGCAAGTGTCGATACTTTAATATA
66 GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGAATATATTGCAAGTGTCGATACTTTAATATA
*
4809299 AGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTAGAAAG
131 AGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
4809351 TGTCGATTCTTTATAAATATGTATCGATCTACAACGATATAACAGGTAAAAATATGACAAAATCG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
* * * *
4809416 ATCAGGAAAAGACAAAATCGATAAAGAGATACC-AGATATATTGCAAGTTTCGATACTTTAATAT
66 GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGA-ATATATTGCAAGTGTCGATACTTTAATAT
* * *
4809480 AATTATCGACACATTGTGAATATAAAGGAGAAGCAATTTTAGCGCCTATAAAG
130 AAGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
* * * *
4809533 TGTCGATTCTTTATAAATATATATCGATCCACAACGATATAACAGGTAAAAATATAATAAAACCG
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
* ** * * * * *
4809598 ATCTCGAAAAGACAAAACCAGTAAAGAGCTGCC-AGATATATTGAAAGTGTCGATAATTTAATAT
66 GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGA-ATATATTGCAAGTGTCGATACTTTAATAT
* * * ** *
4809662 AAGTATCGACACTTTGTGAATTTAAAAGATAAGTTGTTTTAGCGCCTTTAAAG
130 AAGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
* * * * *
4809715 TGTCGATACTTTATAAAAATGTATCGATCCATAATGATATAAC-TGTTAAAAATATGATAAAACC
1 TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATG-TAAAAATATGACAAAACC
*** * * * *
4809779 GGTCTCTAAATGACAAAACCGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTAATA
65 GGTCAGGAAAAGACAAAACCGGTAAAGAGATACCGAATATATTGCAAGTGTCGATACTTTAATA
4809843 AGTACGCGTA
Statistics
Matches: 937, Mismatches: 95, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
181 3 0.00
182 933 1.00
183 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (182 bp):
TGTCGATTCTTTATAAATATGTATCGATCCACAACGATATAACATGTAAAAATATGACAAAACCG
GTCAGGAAAAGACAAAACCGGTAAAGAGATACCGAATATATTGCAAGTGTCGATACTTTAATATA
AGTATCGACACATTGTGAATTTAAAGGAGAAGCAGTTTTAGCGCCTATAAAG
Found at i:4812220 original size:21 final size:21
Alignment explanation
Indices: 4812196--4812239 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
4812186 AAGACAATCA
4812196 AGAGTCGAAGAGAA-ACTTGAG
1 AGAGTCGAAGA-AACACTTGAG
4812217 AGAGTCGAAGAAACACTTGAG
1 AGAGTCGAAGAAACACTTGAG
4812238 AG
1 AG
4812240 GCATAATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.43, C:0.11, G:0.32, T:0.14
Consensus pattern (21 bp):
AGAGTCGAAGAAACACTTGAG
Found at i:4812320 original size:21 final size:21
Alignment explanation
Indices: 4812296--4812348 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
4812286 GTTGAGGTGT
4812296 TGAGGGGTGAACTTAAGATGG
1 TGAGGGGTGAACTTAAGATGG
*
4812317 TGAGGGGTGAACTTAATATGG
1 TGAGGGGTGAACTTAAGATGG
4812338 TGAGGGGTGAA
1 TGAGGGGTGAA
4812349 AAATTTGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.28, C:0.04, G:0.43, T:0.25
Consensus pattern (21 bp):
TGAGGGGTGAACTTAAGATGG
Found at i:4812534 original size:18 final size:18
Alignment explanation
Indices: 4812511--4812566 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
4812501 GAAAAAATAT
*
4812511 GAAGAAGAAAATAAGGAG
1 GAAGAAGAAAAGAAGGAG
*
4812529 GAAGAAGAAAAGAGGGAG
1 GAAGAAGAAAAGAAGGAG
*
4812547 GAAGAAGAAAAGAGGGAG
1 GAAGAAGAAAAGAAGGAG
4812565 GA
1 GA
4812567 TGTCAATGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.57, C:0.00, G:0.41, T:0.02
Consensus pattern (18 bp):
GAAGAAGAAAAGAAGGAG
Found at i:4814141 original size:19 final size:19
Alignment explanation
Indices: 4814096--4814144 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
4814086 AATGTAGAGT
*
4814096 TAATTTTGTATAAGATTTA
1 TAATTTTTTATAAGATTTA
*
4814115 TAATTTTTTATACGATTTA
1 TAATTTTTTATAAGATTTA
4814134 TAATTTTTTAT
1 TAATTTTTTAT
4814145 GTGGATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (19 bp):
TAATTTTTTATAAGATTTA
Found at i:4814694 original size:198 final size:198
Alignment explanation
Indices: 4814406--4815940 Score: 1962
Period size: 200 Copynumber: 7.8 Consensus size: 198
4814396 GTAAGCATAT
* * *
4814406 GTGTCGATACATTTATAAAACGTGTCGATCCTAAAAACATCGAAACAAATAATTATAATATAATA
1 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAA-AAATAATTATAATGTAATA
* * * * *
4814471 GGTAATTTTATAATATAATCGGTATAAATATATCGATTTTATGTGAGAATATGTCTATATAATGT
65 GGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
4814536 ATCGACA-TTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATGTCAAAAATGATGAACGA
130 ATCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATG-CAAAAATGATGAACGA
4814600 ATAAA
194 ATAAA
*
4814605 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAACAAATAATTATAATGTAATAG
1 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAAAAATAATTATAATGTAATAG
*
4814670 GTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATATA
66 GTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGTA
*
4814735 TCGACA-TTTTTTATTTTGTGTCGATATTTTTTGTCCAGAATGAATGCAAAAAAATGATGAACGA
131 TCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATGC--AAAAATGATGAACGA
4814799 ATAAA
194 ATAAA
** *
4814804 GTGTCGAT-C----CCAAAAA----C-AT-C--GAAACA--G-----ATAATTATAATGTAATAG
1 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAAAAATAATTATAATGTAATAG
* *
4814849 GTAATTTTGTAATATAACCGGTATAAATATATCGGTTTTATGTGAGAATAGGTCTACATAATGTA
66 GTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGTA
* *
4814914 TCAACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGATTGAATGCCAAAAATGATGAACGAA
131 TCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATG-CAAAAATGATGAACGAA
4814979 TAAA
195 TAAA
* * * * *
4814983 ATGTAGATACATATATAAAAAGTATTGAT-CTCAAAAATATCGAAACAAATAATTATAATGTAAT
1 GTGTCGATACATATATAAAAAGTGTCGATCCT-AAAAACATCGAAA-AAATAATTATAATGTAAT
* ** *
4815047 AGATAATTTTACAATATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATG
64 AGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATG
* * * *
4815112 TATCAACACTTTTTTTATTTTTTGTCGATACTTTTTATCCAGATTGAATGCCAAAAATGATGAAC
129 TATCGACAC-TTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATG-CAAAAATGATGAAC
4815177 GAATAAA
192 GAATAAA
4815184 GTGTCGATACATATATAAAAAGTGTCGAT-CTCAAAAACATCGAAATAAATAATTATAATGTAAT
1 GTGTCGATACATATATAAAAAGTGTCGATCCT-AAAAACATCGAAA-AAATAATTATAATGTAAT
* * *
4815248 AAGTAATTTTGTAATATAACTGGTATAAATATACTGATTTTATGTGAGAATAGGTCTACATAATG
64 AGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATG
* *
4815313 TATCGACTCTTTTTTATTTTTTGTCGATACTTTTTGTCCAGAATGAATGCAAAAAATGATGAACG
129 TATCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATGC-AAAAATGATGAACG
4815378 AATAAA
193 AATAAA
* * * *
4815384 GTGTCGATACATATATAAAAAGTATCGATCCCAAAAACATCGAAATAGACAATTATAATGTAATA
1 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAA-AAATAATTATAATGTAATA
4815449 GGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
65 GGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGT
* *
4815514 ATCGACACTTTTTTATTTTATGTCGATATTTTTTGTCCAGAATGAATGCAAAAAATGATGAACGA
130 ATCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATGC-AAAAATGATGAACGA
4815579 ATAAA
194 ATAAA
*
4815584 GTGTCGATACATATATAAAAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAATA
1 GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAA-AAATAATTATAATGTAATA
* * ** * * *
4815649 GTTAAATTTACAATGTAACCGGTATAACA-ATACCGGTTTTATGGGAGAATAGGTCTACA-ACAT
65 GGTAATTTTGTAATATAACCGGTATAA-ATATACCGATTTTATGTGAGAATAGGTCTACATA-AT
* ** * * * * *
4815712 GTATCGACACTTGTGGAATTTGTGTCGATACTTTTTGTCCAGAAGGAAAT-CCAAAA-GTTGCAC
128 GTATCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATG-AATGCAAAAATGATGAAC
*
4815775 GCATAAA
192 GAATAAA
* * * * * *
4815782 GTGTCGATACATTTTTAAAATA-TGTCGATCCCAATAACAT-TAAAAGCGATAATTATAATGTAA
1 GTGTCGATACATATATAAAA-AGTGTCGATCCTAAAAACATCGAAAA--AATAATTATAATGTAA
* * * * * * *
4815845 TAGGTAAATTTCTAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTC-ATCATAA
63 TAGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTA-CATAA
* * * * *
4815909 AGTATCGACAATTGTTAAATTTGTGTCGATAC
127 TGTATCGACACTTTTTTATTTTGTGTCGATAC
4815941 CATTTTAAAT
Statistics
Matches: 1203, Mismatches: 96, Indels: 75
0.88 0.07 0.05
Matches are distributed among these distances:
179 111 0.09
180 39 0.03
181 1 0.00
184 6 0.00
186 5 0.00
188 1 0.00
189 5 0.00
190 1 0.00
192 4 0.00
194 6 0.00
196 1 0.00
197 6 0.00
198 265 0.22
199 78 0.06
200 486 0.40
201 188 0.16
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (198 bp):
GTGTCGATACATATATAAAAAGTGTCGATCCTAAAAACATCGAAAAAATAATTATAATGTAATAG
GTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGTA
TCGACACTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGAATGCAAAAATGATGAACGAAT
AAA
Found at i:4815491 original size:401 final size:399
Alignment explanation
Indices: 4814801--4815914 Score: 1562
Period size: 401 Copynumber: 2.8 Consensus size: 399
4814791 ATGAACGAAT
* * *
4814801 AAAGTGTCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAATTTTGTAATATAA
1 AAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAATAAGTAATTTTGTAATATAA
*
4814866 CCGGTATAAATATA-TCGGTTTTATGTGAGAATAGGTCTACATAATGTATCAACACTTTTTTATT
66 CCGGTATAAATATACT-GGTTTTATGTGAGAATAGGTCTACATAATGTATCGACACTTTTTTATT
* * *
4814930 TTGTGTCGATACTTTTTGTCCAGATTGAATGCCAAAAATGATGAACGAATAAAATGTAGATACAT
130 TTGTGTCGATACTTTTTGTCCAGAATGAATG-CAAAAATGATGAACGAATAAAGTGTCGATACAT
* * * * * *
4814995 ATATAAAAAGTATTGATCTCAAAAATATCGAAACAAATAATTATAATGTAATAGATAATTTTACA
194 ATATAAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAATTTTATA
4815060 ATATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGTATCAACACTTTT
259 ATATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGTATCAACAC-TTT
* * *
4815125 TTTATTTTTTGTCGATACTTTTTATCCAGATTGAATGCCAAAAATGATGAACGAATAAAGTGTCG
323 TTTATTTTATGTCGATACTTTTTATCCAGAATGAATGCAAAAAATGATGAACGAATAAAGTGTCG
4815190 ATACATATATAA
388 ATACATATATAA
*
4815202 AAAGTGTCGATCTCAAAAACATCGAAATAAATAATTATAATGTAATAAGTAATTTTGTAATATAA
1 AAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAATAAGTAATTTTGTAATATAA
* * *
4815267 CTGGTATAAATATACTGATTTTATGTGAGAATAGGTCTACATAATGTATCGACTCTTTTTTATTT
66 CCGGTATAAATATACTGGTTTTATGTGAGAATAGGTCTACATAATGTATCGACACTTTTTTATTT
*
4815332 TTTGTCGATACTTTTTGTCCAGAATGAATGCAAAAAATGATGAACGAATAAAGTGTCGATACATA
131 TGTGTCGATACTTTTTGTCCAGAATGAATGC-AAAAATGATGAACGAATAAAGTGTCGATACATA
* * *
4815397 TATAAAAAGTATCGATCCCAAAAACATCGAAATAGACAATTATAATGTAATAGGTAATTTTGTAA
195 TATAAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAATTTTATAA
* *
4815462 TATAACCGGTATAAATATACCGATTTTATGTGAGAATAGGTCTACATAATGTATCGACACTTTTT
260 TATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGTATCAACACTTTTT
* *
4815527 TATTTTATGTCGATATTTTTTGTCCAGAATGAATGCAAAAAATGATGAACGAATAAAGTGTCGAT
325 TATTTTATGTCGATACTTTTTATCCAGAATGAATGCAAAAAATGATGAACGAATAAAGTGTCGAT
4815592 ACATATATAA
390 ACATATATAA
* ** *
4815602 AAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAAT-AGTTAAATTTACAATGTA
1 AAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAATAAG-TAATTTTGTAATATA
* * * **
4815666 ACCGGTATAACA-ATACCGGTTTTATGGGAGAATAGGTCTACA-ACATGTATCGACACTTGTGGA
65 ACCGGTATAA-ATATACTGGTTTTATGTGAGAATAGGTCTACATA-ATGTATCGACACTTTTTTA
* * * * * *
4815729 ATTTGTGTCGATACTTTTTGTCCAGAAGGAAAT-CCAAAA-GTTGCACGCATAAAGTGTCGATAC
128 TTTTGTGTCGATACTTTTTGTCCAGAATG-AATGCAAAAATGATGAACGAATAAAGTGTCGATAC
* * * * ** *
4815792 ATTTTTAAAATA-TGTCGATCCCAATAACATTAAAAGC-GATAATTATAATGTAATAGGTAAATT
192 ATATATAAAA-AGTATCGATCCCAAAAACATCGAAA-CAGATAATTATAATGTAATAGGTAATTT
* * * * * *
4815855 TCTAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTC-ATCATAAAGTATC
255 TATAATATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTA-CATAATGTATC
4815915 GACAATTGTT
Statistics
Matches: 640, Mismatches: 64, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
397 1 0.00
398 123 0.19
399 8 0.01
400 210 0.33
401 297 0.46
402 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.34
Consensus pattern (399 bp):
AAAGTGTCGATCCCAAAAACATCGAAATAAATAATTATAATGTAATAAGTAATTTTGTAATATAA
CCGGTATAAATATACTGGTTTTATGTGAGAATAGGTCTACATAATGTATCGACACTTTTTTATTT
TGTGTCGATACTTTTTGTCCAGAATGAATGCAAAAATGATGAACGAATAAAGTGTCGATACATAT
ATAAAAAGTATCGATCCCAAAAACATCGAAACAGATAATTATAATGTAATAGGTAATTTTATAAT
ATAACCGGTATAAATATACCGGTTTTATGTGAGAATAGGTCTACATAATGTATCAACACTTTTTT
ATTTTATGTCGATACTTTTTATCCAGAATGAATGCAAAAAATGATGAACGAATAAAGTGTCGATA
CATATATAA
Found at i:4817467 original size:12 final size:12
Alignment explanation
Indices: 4817421--4817466 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
4817411 CAAGAGGTCA
*
4817421 ATGAAGATGAAG
1 ATGATGATGAAG
*
4817433 ATGACGATGAAG
1 ATGATGATGAAG
* *
4817445 ATAATGATGATG
1 ATGATGATGAAG
4817457 ATGATGATGA
1 ATGATGATGA
4817467 TCCAAACAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.24
Consensus pattern (12 bp):
ATGATGATGAAG
Found at i:4819176 original size:200 final size:199
Alignment explanation
Indices: 4818809--4819577 Score: 862
Period size: 201 Copynumber: 3.8 Consensus size: 199
4818799 TAAAGTTTCC
*
4818809 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCGAAAACATCGAAACCCATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* ** ** * * * *
4818874 GTAATAGGTAATTTTGTAATATAACCGGTATATTTATACCGGTTTTATGTGATAATCGGTCTACA
66 GTAATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACA
* * * *
4818939 TAATATGTCAACACTTTTTA-ATGTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAAAAGGGT
131 TAATGTATCGACAC-TTTTAGATGTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAAAAGGGT
4819003 GAACA
195 GAACA
* * * *
4819008 CATAATGTGTCGATAAATTTATAAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
1 CATAAAGTGTCGATACATTT-TTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAA
* * * * * *
4819073 TGTAATAGGTAAATTTACAATGTAACCGGTACAAATGTACCAGTTTTTTGAGAAAATAGGTGAAC
65 TGTAATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCAAC
* * * *
4819138 ATAATGTATCGACACATTTTAGAT-TTGTGTCAATACTTTTGGTCCACAAGGAAAAT-CCAAAAA
130 ATAATGTATCGACAC-TTTTAGATGTTGTGTCGATACTTTT-TTCCAGAATG--AATGCCAAAAA
* * *
4819201 GGTTGTACC
191 GGGTGAACA
* * *
4819210 CATAAAGTGTCGATACATTTTTAAACAGTATCGATCCCTAAAACATCAAAACCCATAATTATAAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* ** * * * * * *
4819275 GTAATAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGTGAGAATATGTCTATA
66 GTAATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACA
* * * *
4819340 TAATTTGTCGACACTTTTAAATGATGTGTCGATACTTTTTTCCAGAATGAATGCTCAAAGAAGGG
131 TAATGTATCGACACTTTTAGATGTTGTGTCGATACTTTTTTCCAGAATGAATGC-CAAA-AAGGG
*
4819405 TGAACG
194 TGAACA
* * * * * * * * *
4819411 CAGAAAGTGTTGATACATTTATAAAAAGTATCAATCCTAAAAATATTGAAACCGATAATTATTAT
1 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * * *
4819476 GTAATACGTAAATTTACAATGTAACTGGTATAAATGTACCGGTTTTATGAGAAAATAGGTGAACA
66 GTAATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACA
*
4819541 TAATGTATCGACACGTTTTAGAT-TTGTGTTGATACTT
131 TAATGTATCGACAC-TTTTAGATGTTGTGTCGATACTT
4819578 GTAAATAACG
Statistics
Matches: 466, Mismatches: 94, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
198 3 0.01
199 19 0.04
200 141 0.30
201 263 0.56
202 37 0.08
203 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (199 bp):
CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAAT
GTAATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACA
TAATGTATCGACACTTTTAGATGTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAAAAGGGTG
AACA
Found at i:4823681 original size:9 final size:9
Alignment explanation
Indices: 4823667--4823700 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
4823657 TAAAAGGGAA
4823667 AAATAAAAT
1 AAATAAAAT
4823676 AAATAAAAT
1 AAATAAAAT
4823685 AAAT-AAAT
1 AAATAAAAT
4823693 AAGATAAA
1 AA-ATAAA
4823701 GGAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 15 0.65
10 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:4823688 original size:13 final size:13
Alignment explanation
Indices: 4823666--4823700 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
4823656 GTAAAAGGGA
4823666 AAAATAAAATAAAT
1 AAAAT-AAATAAAT
4823680 AAAATAAATAAAT
1 AAAATAAATAAAT
*
4823693 AAGATAAA
1 AAAATAAA
4823701 GGAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:4824007 original size:2 final size:2
Alignment explanation
Indices: 4823967--4823991 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4823957 GAAAATAATA
4823967 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4823992 AAGTTATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4824177 original size:2 final size:2
Alignment explanation
Indices: 4824170--4824194 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4824160 TATTAAAGAA
4824170 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4824195 CACATATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4824221 original size:18 final size:17
Alignment explanation
Indices: 4824200--4824242 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
4824190 ATATACACAT
4824200 ATAATAATAATAACATAA
1 ATAATAATAATAA-ATAA
* *
4824218 ATAATAAAAATAAATGA
1 ATAATAATAATAAATAA
4824235 ATAA-AATA
1 ATAATAATA
4824243 TCCATATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 7 0.32
18 12 0.55
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATAA
Found at i:4824239 original size:14 final size:13
Alignment explanation
Indices: 4824202--4824240 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
4824192 ATACACATAT
4824202 AATAATAATAACATA
1 AATAATAA-AA-ATA
4824217 AATAATAAAAATA
1 AATAATAAAAATA
4824230 AATGAATAAAA
1 AAT-AATAAAA
4824241 TATCCATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 8 0.35
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (13 bp):
AATAATAAAAATA
Found at i:4825535 original size:105 final size:104
Alignment explanation
Indices: 4825240--4826097 Score: 1233
Period size: 105 Copynumber: 8.3 Consensus size: 104
4825230 CATTGTTCCA
* * ** *
4825240 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGG-ATTGGGAAATTG-TTGTTGACAAG
* * * *
4825305 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** *
4825346 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCT-GAAT--GAAATT-TTGTTGACAAGCA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAAGCA
4825407 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
4825446 AGTCCAATATCTTTCATTGTGAAGTTGAAATTGGCTCTGGGATTGGGAAGTTGTTGTTGACAAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-GGATTGGGAAATTGTTGTTGACAAGC
* *
4825511 AGCGGTCCCTTCGTCGTGAAGTTGACCTTGCATTGTCTGG
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4825551 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAAT--GAAATT-TTGTTGACAAGCA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAAGCA
4825612 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
4825651 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTGTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-GATTGGGAAA-TTGTTGTTGACAAG
* *
4825715 CAGCGGTCCCTTCGTCGTGAAGTTAAACTTGCATTGTCTGG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
4825756 AGTCCAATATCCTTTGCTGTGAAGTTGAAATTGGCTCT-GAAT--GAAATT-TTGTTGACAAGCA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAAGCA
4825817 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
4825856 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTGTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-GATTGGGAAA-TTGTTGTTGACAAG
* *
4825920 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTTTCTGG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
4825961 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-GATTGGGAAATTGTTGTTGACAAGC
* * *
4826026 AACGGTCCCTTCGTCGTGAAGTTGAACTTGTGCTGTCTTGG
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGG
*
4826067 -GTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATT
4826098 CAAGTATTGT
Statistics
Matches: 685, Mismatches: 50, Indels: 35
0.89 0.06 0.05
Matches are distributed among these distances:
100 253 0.37
101 7 0.01
102 19 0.03
103 14 0.02
104 10 0.01
105 341 0.50
106 41 0.06
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (104 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAAGCA
GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:4825593 original size:205 final size:205
Alignment explanation
Indices: 4825240--4826097 Score: 1353
Period size: 205 Copynumber: 4.2 Consensus size: 205
4825230 CATTGTTCCA
* * **
4825240 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACCGGGAAA-TTGTTTGTTGACA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-A-TTGGAAAGTTG-TTGTTGACA
* * * ** * *
4825303 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGTTGTGA
63 AGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGA
**
4825368 AGTTGAAATTGAATCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
128 AGTTGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
4825433 TTGCGTTGTCTGG
193 TTGCGTTGTCTGG
* * * * *
4825446 AGTCCAATATCTTTCATTGTGAAGTTGAAATTGGCTCTGGGATTGGGAAGTTGTTGTTGACAAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
*
4825511 AGCGGTCCCTTCGTCGTGAAGTTGACCTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
4825576 TGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
131 TGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
4825641 CGTTGTCTGG
196 CGTTGTCTGG
4825651 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
* *
4825716 AGCGGTCCCTTCGTCGTGAAGTTAAACTTGCATTGTCTGGAGTCCAATATCCTTTGCTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
4825781 TGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
131 TGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
4825846 CGTTGTCTGG
196 CGTTGTCTGG
4825856 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
* *
4825921 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTTTCTGGAGTCCAATATCCTTCGTTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
* * *
4825986 TGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGA
131 TGAAATTGGCTCTGA-A-T--GAAATT-TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGA
* *
4826051 ACTTGTGCTGTCTTGG
191 ACTTGCGTTGTC-TGG
*
4826067 -GTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATT
4826098 CAAGTATTGT
Statistics
Matches: 609, Mismatches: 35, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
205 484 0.79
206 40 0.07
207 2 0.00
209 5 0.01
210 75 0.12
211 3 0.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (205 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
TGAAATTGGCTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
CGTTGTCTGG
Found at i:4826726 original size:68 final size:65
Alignment explanation
Indices: 4826633--4826790 Score: 199
Period size: 68 Copynumber: 2.4 Consensus size: 65
4826623 AAGATATATG
* * * ** *
4826633 TTGTTTCATGAGAAACAGTTTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGAT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTAT-TTTTAAGGGAAATAAATTCAAAG-G
4826698 TT
64 TT
* * *
4826700 TGTGTTTCAAGAGTAACTGTCTCAAGGGAGACAAAATTATTTTTAGGGGAAATAAATTCAAAGGT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTATTTTTAAGGGAAATAAATTCAAAGGT
4826765 T
65 T
*
4826766 TTGTTTCAAGGGAAACTGTCTCAAG
1 TTGTTTCAAGAGAAACTGTCTCAAG
4826791 ATAGACGAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
65 22 0.28
66 3 0.04
67 21 0.27
68 33 0.42
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTATTTTTAAGGGAAATAAATTCAAAGGTT
Found at i:4826817 original size:36 final size:35
Alignment explanation
Indices: 4826766--4827046 Score: 263
Period size: 36 Copynumber: 8.0 Consensus size: 35
4826756 TTCAAAGGTT
* *
4826766 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
4826802 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
4826837 CTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAAT
1 -TT-GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
* * **
4826875 TTGTTTCAA-AGAAAACATAT-TC---A-A-A-TATT
1 TTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
* *
4826904 TTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
4826939 TTTATTTCAAGGGAAACTGTCTCAAGATAGACGAAAT
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
4826976 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
4827011 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAA
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
4827047 CTCTTCTAGT
Statistics
Matches: 203, Mismatches: 26, Indels: 32
0.78 0.10 0.12
Matches are distributed among these distances:
28 2 0.01
29 17 0.08
30 1 0.00
31 1 0.00
32 2 0.01
33 1 0.00
34 1 0.00
35 10 0.05
36 132 0.65
37 33 0.16
38 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (35 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:4826869 original size:138 final size:137
Alignment explanation
Indices: 4826714--4827020 Score: 402
Period size: 138 Copynumber: 2.2 Consensus size: 137
4826704 TTTCAAGAGT
* ** * * *
4826714 AACTGTCTCAAGGGAGACAAAATTAT-TTTTAGGGGAAATAAATTCAAAGGTTTTGTTTCAAGGG
1 AACTGTCTCAAGGGAGACAAAATT-TGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGGG
* *
4826778 AAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAG
65 AAACTGTCTCAAGAGAGA-GAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTAG
4826842 TTCCAAAAGA
128 TTCCAAAAGA
* * *
4826852 AACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATTTTGTTTCAAGGGA
1 AACTGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGGGA
* * * * * *
4826917 AACTGTCTCAAGAGAGATAAAATTTATTTCAAGGGAAACTGTCTCAAGATAGACGAAATTTGTTT
66 AACTGTCTCAAGAGAGAGAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
*
4826982 CAAGAGA
131 CAAAAGA
*
4826989 AACTGTCTCAAGAGAGACAAAATTTGTTTCAA
1 AACTGTCTCAAGGGAGACAAAATTTGTTTCAA
4827021 GGGAAACTGT
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
137 46 0.31
138 101 0.69
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (137 bp):
AACTGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGGGA
AACTGTCTCAAGAGAGAGAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
CAAAAGA
Found at i:4826981 original size:101 final size:103
Alignment explanation
Indices: 4826802--4826990 Score: 292
Period size: 102 Copynumber: 1.9 Consensus size: 103
4826792 TAGACGAAAA
*
4826802 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGA
4826867 GACGAAATTTGTTTCAA-AGAAAACATATTCAAATATT
66 GACGAAATTTGTTTCAAGAGAAAACATATTCAAATATT
* * * * ** *
4826904 TTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTA-TTTCAAGGGAAACTGTCTCAAGATA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGA
4826968 GACGAAATTTGTTTCAAGAGAAA
66 GACGAAATTTGTTTCAAGAGAAA
4826991 CTGTCTCAAG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 37 0.47
102 41 0.53
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.28
Consensus pattern (103 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGA
GACGAAATTTGTTTCAAGAGAAAACATATTCAAATATT
Found at i:4827110 original size:36 final size:36
Alignment explanation
Indices: 4827068--4827183 Score: 101
Period size: 36 Copynumber: 3.2 Consensus size: 36
4827058 AAAACGGTCT
4827068 CAAGTGAGACAAATCTTGTTTTAAGAAAAACAATCA
1 CAAGTGAGACAAATCTTGTTTTAAGAAAAACAATCA
** * * * ** * * *
4827104 TGAGTGAAATAAATCTTCTTTCGAGTAAAACAGTCC
1 CAAGTGAGACAAATCTTGTTTTAAGAAAAACAATCA
* *
4827140 CAAGTGAGACAAAGTC-TGTTTTAA-AAAAGCAATCT
1 CAAGTGAGACAAA-TCTTGTTTTAAGAAAAACAATCA
4827175 CAAGTGAGA
1 CAAGTGAGA
4827184 TAATCATCTG
Statistics
Matches: 58, Mismatches: 21, Indels: 3
0.71 0.26 0.04
Matches are distributed among these distances:
35 16 0.28
36 40 0.69
37 2 0.03
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (36 bp):
CAAGTGAGACAAATCTTGTTTTAAGAAAAACAATCA
Found at i:4827533 original size:18 final size:18
Alignment explanation
Indices: 4827506--4827541 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
4827496 TGTTAAATCC
* *
4827506 CCAAAGATGCCTCAATAT
1 CCAAAAATGCCCCAATAT
4827524 CCAAAAATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
4827542 TTGATGTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (18 bp):
CCAAAAATGCCCCAATAT
Found at i:4828017 original size:29 final size:29
Alignment explanation
Indices: 4827975--4828037 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
4827965 TTGGCATTTG
4827975 ATGCTCAAAGGATTGATGGGGTAGCTTGC
1 ATGCTCAAAGGATTGATGGGGTAGCTTGC
4828004 ATGCTCAAAGGATTGATGGGGTAGCTTGC
1 ATGCTCAAAGGATTGATGGGGTAGCTTGC
4828033 ATGCT
1 ATGCT
4828038 TCTCTACTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
ATGCTCAAAGGATTGATGGGGTAGCTTGC
Found at i:4828649 original size:19 final size:20
Alignment explanation
Indices: 4828627--4828670 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
4828617 TTTGTTCCCT
*
4828627 TTTTTATTTTTGTTCTTT-C
1 TTTTTATTCTTGTTCTTTCC
* *
4828646 TTTTTGTTCTTGTTTTTTCC
1 TTTTTATTCTTGTTCTTTCC
4828666 TTTTT
1 TTTTT
4828671 TGCTTATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.02, C:0.11, G:0.07, T:0.80
Consensus pattern (20 bp):
TTTTTATTCTTGTTCTTTCC
Found at i:4828692 original size:22 final size:21
Alignment explanation
Indices: 4828642--4828695 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
4828632 ATTTTTGTTC
*
4828642 TTTCTTTTTG-TTCTTGTTTT
1 TTTCTTTTTGCTTATTGTTTT
* *
4828662 TTCCTTTTTTGCTTATTTTCTTT
1 TTTC-TTTTTGCTTATTGT-TTT
4828685 TTTCTTTTTGC
1 TTTCTTTTTGC
4828696 CCTTTTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 6 0.22
22 12 0.44
23 6 0.22
ACGTcount: A:0.02, C:0.15, G:0.07, T:0.76
Consensus pattern (21 bp):
TTTCTTTTTGCTTATTGTTTT
Found at i:4831725 original size:9 final size:9
Alignment explanation
Indices: 4831711--4831744 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
4831701 TAAAAGGGAA
4831711 AAATAAAAT
1 AAATAAAAT
4831720 AAATAAAAT
1 AAATAAAAT
4831729 AAAT-AAAT
1 AAATAAAAT
4831737 AAGATAAA
1 AA-ATAAA
4831745 GGAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 15 0.65
10 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:4831732 original size:13 final size:13
Alignment explanation
Indices: 4831710--4831744 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
4831700 GTAAAAGGGA
4831710 AAAATAAAATAAAT
1 AAAAT-AAATAAAT
4831724 AAAATAAATAAAT
1 AAAATAAATAAAT
*
4831737 AAGATAAA
1 AAAATAAA
4831745 GGAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:4832247 original size:18 final size:17
Alignment explanation
Indices: 4832226--4832268 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
4832216 ATATACACAT
4832226 ATAATAATAATAACATAA
1 ATAATAATAATAA-ATAA
* *
4832244 ATAATAAAAATAAATGA
1 ATAATAATAATAAATAA
4832261 ATAA-AATA
1 ATAATAATA
4832269 TTCATATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 7 0.32
18 12 0.55
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATAA
Found at i:4832265 original size:14 final size:13
Alignment explanation
Indices: 4832228--4832266 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
4832218 ATACACATAT
4832228 AATAATAATAACATA
1 AATAATAA-AA-ATA
4832243 AATAATAAAAATA
1 AATAATAAAAATA
4832256 AATGAATAAAA
1 AAT-AATAAAA
4832267 TATTCATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 8 0.35
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (13 bp):
AATAATAAAAATA
Found at i:4833182 original size:23 final size:23
Alignment explanation
Indices: 4833089--4833173 Score: 152
Period size: 23 Copynumber: 3.7 Consensus size: 23
4833079 AAATAGGTCA
4833089 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
4833112 ATATAAGCGTTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
4833135 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
4833158 ATATAAGCGTTACCTA
1 ATATAAGCGCTACCTA
4833174 ATATGTTATT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:4843641 original size:6 final size:6
Alignment explanation
Indices: 4843624--4843671 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
4843614 GATCAACATT
*
4843624 TTTGCA TCTGCA TTTGCA TTTTTGCA TTTTGCA TTTGCA TTTGCA TTT
1 TTTGCA TTTGCA TTTGCA --TTTGCA -TTTGCA TTTGCA TTTGCA TTT
4843672 AATTTTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 25 0.66
7 7 0.18
8 6 0.16
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.54
Consensus pattern (6 bp):
TTTGCA
Found at i:4843656 original size:21 final size:20
Alignment explanation
Indices: 4843620--4843665 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
4843610 TTGAGATCAA
4843620 CATTTTTGCATCTGCATTTG
1 CATTTTTGCATCTGCATTTG
*
4843640 CATTTTTGCATTTTGCATTTG
1 CATTTTTGCA-TCTGCATTTG
4843661 CATTT
1 CATTT
4843666 GCATTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.15, C:0.17, G:0.13, T:0.54
Consensus pattern (20 bp):
CATTTTTGCATCTGCATTTG
Found at i:4844326 original size:24 final size:24
Alignment explanation
Indices: 4844271--4844326 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
4844261 AACTCATGGT
*
4844271 CATTACCAAAAGACCAAATTTTGA
1 CATTACCTAAAGACCAAATTTTGA
4844295 CATTACCTAAAGACCAAATTTTGA
1 CATTACCTAAAGACCAAATTTTGA
4844319 CATTACCT
1 CATTACCT
4844327 TTATTTGAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (24 bp):
CATTACCTAAAGACCAAATTTTGA
Found at i:4844938 original size:17 final size:17
Alignment explanation
Indices: 4844906--4844951 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
4844896 AGCAAAAAGG
*
4844906 AAAAAAGAAACA-AAAA
1 AAAAAAGAAAAAGAAAA
4844922 AAAAAAGAAAAAGAAAA
1 AAAAAAGAAAAAGAAAA
**
4844939 AGCAAAGAAAAAG
1 AAAAAAGAAAAAG
4844952 GAACAAGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAGAAAA
Found at i:4844940 original size:6 final size:6
Alignment explanation
Indices: 4844907--4844951 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
4844897 GCAAAAAGGA
* *
4844907 AAAAAG AAACA- AAAAA- AAAAAG AAAAAG AAAAAG -CAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
4844952 GAACAAGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 13 0.39
6 20 0.61
ACGTcount: A:0.82, C:0.04, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:4846243 original size:39 final size:39
Alignment explanation
Indices: 4846150--4846245 Score: 131
Period size: 39 Copynumber: 2.5 Consensus size: 39
4846140 GCAAAAACAA
4846150 ATTTTGTCTTCCTTGAGATAGTTTCCCTCGAAACAGAAG
1 ATTTTGTCTTCCTTGAGATAGTTTCCCTCGAAACAGAAG
* * * *
4846189 ATTGTT-TTTTGCTTGAGATAGTTTCTCTCGAAACATAAG
1 ATT-TTGTCTTCCTTGAGATAGTTTCCCTCGAAACAGAAG
*
4846228 ATTTTGTCTCCCTTGAGA
1 ATTTTGTCTTCCTTGAGA
4846246 CAGTCTCCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.04
39 44 0.92
40 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (39 bp):
ATTTTGTCTTCCTTGAGATAGTTTCCCTCGAAACAGAAG
Found at i:4846253 original size:15 final size:15
Alignment explanation
Indices: 4846233--4846468 Score: 139
Period size: 15 Copynumber: 14.1 Consensus size: 15
4846223 ATAAGATTTT
4846233 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
* *
4846248 GTCTCCTTTGTGACA
1 GTCTCCCTTGAGACA
*
4846263 GTCTCCTTTGAGACA
1 GTCTCCCTTGAGACA
* *
4846278 GTTTCCCTTGAAACAAGTTTA
1 GTCTCCCTTGAGAC------A
4846299 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
* *
4846314 GTTTCCCTTGAAACAAA
1 GTCTCCCTTGAGAC--A
*
4846331 TTTTATCTCCCTTGAGACA
1 ----GTCTCCCTTGAGACA
*
4846350 GTCTCACTTGAGACA
1 GTCTCCCTTGAGACA
* *
4846365 GTTTCCCTTGAAACAAA
1 GTCTCCCTTGAGAC--A
4846382 TTTTGTCTCCCTTGAGACA
1 ----GTCTCCCTTGAGACA
4846401 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
* *
4846416 GTTTCCCTTGAAACAAATTTA
1 GTCTCCCTTGAGAC------A
4846437 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
4846452 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
4846467 GT
1 GT
4846469 TTTCCTTGAA
Statistics
Matches: 173, Mismatches: 24, Indels: 48
0.71 0.10 0.20
Matches are distributed among these distances:
15 120 0.69
17 2 0.01
19 2 0.01
21 49 0.28
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.33
Consensus pattern (15 bp):
GTCTCCCTTGAGACA
Found at i:4846310 original size:36 final size:35
Alignment explanation
Indices: 4846262--4846470 Score: 152
Period size: 36 Copynumber: 6.0 Consensus size: 35
4846252 CCTTTGTGAC
* *
4846262 AGTCTCCTTTGAGACAGTTTCCCTTGAAACAAGTTT
1 AGTCTCCCTTGAGACAGTCTCCCTTGAAAC-AGTTT
* *
4846298 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
1 AGTCTCCCTTGAGACAGTCTCCCTTGAAAC--AGTTT
* *
4846335 A-TCTCCCTTGAGACAGTCTCACTTGAGACAG--T
1 AGTCTCCCTTGAGACAGTCTCCCTTGAAACAGTTT
* *
4846367 --T-TCCCTTGAAACAAATTTTGTCTCCCTTGAGAC-----
1 AGTCTCCCTTGAGAC--A----GTCTCCCTTGAAACAGTTT
* *
4846400 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTT
1 AGTCTCCCTTGAGACAGTCTCCCTTGAAAC-AGTTT
*
4846436 AGTCTCCCTTGAGACAGTCTCCCTTGAGACAGTTT
1 AGTCTCCCTTGAGACAGTCTCCCTTGAAACAGTTT
4846471 TCCTTGAAAC
Statistics
Matches: 143, Mismatches: 14, Indels: 33
0.75 0.07 0.17
Matches are distributed among these distances:
30 22 0.15
31 1 0.01
32 2 0.01
34 2 0.01
35 5 0.03
36 105 0.73
37 6 0.04
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (35 bp):
AGTCTCCCTTGAGACAGTCTCCCTTGAAACAGTTT
Found at i:4846346 original size:102 final size:97
Alignment explanation
Indices: 4846200--4846511 Score: 288
Period size: 102 Copynumber: 3.0 Consensus size: 97
4846190 TTGTTTTTTG
* * * * *
4846200 CTTGAGATAGTTTCTCTCGAAACATAAGATTTTGTCTCCCTTGAGACAGTCTCCTTTGTGACAGT
1 CTTGAGACAGTTTCCCTTGAAAC--AA-ATTTTATCTCCCTTGAGACAGTCTCC-TTGAGACAGT
* * *
4846265 CTCCTTTGAGAC-A-GTTTCCCTTGAAACAAGTTTAGTCTCC
62 CTCCCTTGAAACAATGTCTCCCTTGAAAC------AGTCTCC
*
4846305 CTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAGTCTCACTTGAGACAGTTTC
1 CTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAGTCTC-CTTGAGACAGTCTC
*
4846370 CCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCC
65 CCTTGAAAC-AA---TGTCTCCCTTGAAACAGTCTCC
*
4846407 CTTGAGACAGTTTCCCTTGAAACAAA-TTTAGTCTCCCTTGAGACAGTCTCCCTTGAGACAGTTT
1 CTTGAGACAGTTTCCCTTGAAACAAATTTTA-TCTCCCTTGAGACAGTCT-CCTTGAGACAGTCT
* * *
4846471 TCCTTGAAACAAGTTTTGTCTCCCTTGAGACAGTTTCC
64 CCCTTGAAACAA----TGTCTCCCTTGAAACAGTCTCC
4846509 CTT
1 CTT
4846512 TAAACAAATT
Statistics
Matches: 185, Mismatches: 12, Indels: 23
0.84 0.05 0.10
Matches are distributed among these distances:
101 6 0.03
102 142 0.77
103 4 0.02
104 1 0.01
105 20 0.11
108 12 0.06
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (97 bp):
CTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAGTCTCCTTGAGACAGTCTCC
CTTGAAACAATGTCTCCCTTGAAACAGTCTCC
Found at i:4846353 original size:51 final size:51
Alignment explanation
Indices: 4846298--4846511 Score: 358
Period size: 51 Copynumber: 4.2 Consensus size: 51
4846288 AAACAAGTTT
4846298 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGAC
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGAC
* *
4846349 AGTCTCACTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGAC
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGAC
4846400 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAA-TTTAGTCTCCCTTGAGAC
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTA-TCTCCCTTGAGAC
* * *
4846451 AGTCTCCCTTGAGACAGTTTTCCTTGAAACAAGTTTTGTCTCCCTTGAGAC
1 AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGAC
*
4846502 AGTTTCCCTT
1 AGTCTCCCTT
4846512 TAAACAAATT
Statistics
Matches: 153, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
50 3 0.02
51 147 0.96
52 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (51 bp):
AGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGAC
Found at i:4846354 original size:87 final size:87
Alignment explanation
Indices: 4846249--4846411 Score: 265
Period size: 87 Copynumber: 1.9 Consensus size: 87
4846239 CTTGAGACAG
* * *
4846249 TCTCCTTTGTGACAGTCTC-CTTTGAGACAGTTTCCCTTGAAACAAGTTTAGTCTCCCTTGAGAC
1 TCTCCCTTGAGACAGTCTCAC-TTGAGACAGTTTCCCTTGAAACAAATTTAGTCTCCCTTGAGAC
*
4846313 AGTTTCCCTTGAAACAAATTTTA
65 AGTCTCCCTTGAAACAAATTTTA
*
4846336 TCTCCCTTGAGACAGTCTCACTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 TCTCCCTTGAGACAGTCTCACTTGAGACAGTTTCCCTTGAAACAAATTTAGTCTCCCTTGAGACA
4846401 GTCTCCCTTGA
66 GTCTCCCTTGA
4846412 GACAGTTTCC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
87 69 0.99
88 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (87 bp):
TCTCCCTTGAGACAGTCTCACTTGAGACAGTTTCCCTTGAAACAAATTTAGTCTCCCTTGAGACA
GTCTCCCTTGAAACAAATTTTA
Found at i:4846440 original size:87 final size:86
Alignment explanation
Indices: 4846262--4846555 Score: 227
Period size: 87 Copynumber: 3.4 Consensus size: 86
4846252 CCTTTGTGAC
* * * *
4846262 AGTCTCCTTTGAGACAGTTTCCCTTGAAACAAGTTTAGTCTCCCTTGAGACAGTTTCCCTTGAAA
1 AGTCTCC-TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTTGAGA
* *
4846327 CAAATTTTATCTCCCTTGAGAC------
65 C--A--GT-T-TCCCTTGAAACAAATTT
4846349 AGTCTCACTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTTGAGA
1 AGTCTC-CTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTTGAGA
4846414 CAGTTTCCCTTGAAACAAATTT
65 CAGTTTCCCTTGAAACAAATTT
* * * *
4846436 AGTCTCCCTTGAGACAGTCTCCCTTGAGAC--A-GTT-T-T-CCTTGAAACAAGTTTTGTCTCCC
1 AGTCT-CCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGAC-A-----GTCTCCC
*
4846495 TTGAGACAGTTTCCCTTTAAACAAATTTT
59 TTGAGACAGTTTCCCTTGAAACAAA-TTT
* *
4846524 A-TCTCTCTTGAGACAGTTTCCATCGAAACAAA
1 AGTCTC-CTTGAGACAGTTTCCCTTGAAACAAA
4846556 AGATTTATCT
Statistics
Matches: 174, Mismatches: 15, Indels: 34
0.78 0.07 0.15
Matches are distributed among these distances:
81 18 0.10
82 3 0.02
83 2 0.01
84 2 0.01
85 2 0.01
86 1 0.01
87 139 0.80
88 6 0.03
89 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (86 bp):
AGTCTCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTTGAGAC
AGTTTCCCTTGAAACAAATTT
Found at i:4846475 original size:15 final size:15
Alignment explanation
Indices: 4846236--4846511 Score: 120
Period size: 15 Copynumber: 16.4 Consensus size: 15
4846226 AGATTTTGTC
*
4846236 TCCCTTGAGACAGTC
1 TCCCTTGAGACAGTT
* * *
4846251 TCCTTTGTGACAGTC
1 TCCCTTGAGACAGTT
*
4846266 TCCTTTGAGACAGTT
1 TCCCTTGAGACAGTT
*
4846281 TCCCTTGAAACAAGTTTAGT
1 TCCCTTGAGAC-AG--T--T
4846301 CTCCCTTGAGACAGTT
1 -TCCCTTGAGACAGTT
* *
4846317 TCCCTTGAAACAAATTTTAT
1 TCCCTTGAGAC--A--GT-T
*
4846337 CTCCCTTGAGACAGTC
1 -TCCCTTGAGACAGTT
*
4846353 TCACTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
4846368 TCCCTTGAAACAAATTTTGTC
1 TCCCTTGAGAC--A----GTT
*
4846389 TCCCTTGAGACAGTC
1 TCCCTTGAGACAGTT
4846404 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
4846419 TCCCTTGAAACAAATTTAGTC
1 TCCCTTGAGAC------AGTT
*
4846440 TCCCTTGAGACAGTC
1 TCCCTTGAGACAGTT
4846455 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
4846470 TTCCTTGAAACAAGTTTTGT
1 TCCCTTGAGAC-AG---T-T
4846490 CTCCCTTGAGACAGTT
1 -TCCCTTGAGACAGTT
4846506 TCCCTT
1 TCCCTT
4846512 TAAACAAATT
Statistics
Matches: 204, Mismatches: 27, Indels: 60
0.70 0.09 0.21
Matches are distributed among these distances:
15 127 0.62
16 6 0.03
17 4 0.02
18 2 0.01
19 4 0.02
20 7 0.03
21 54 0.26
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (15 bp):
TCCCTTGAGACAGTT
Found at i:4846492 original size:36 final size:36
Alignment explanation
Indices: 4846452--4846555 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 36
4846442 CCTTGAGACA
* *
4846452 GTCTCCCTTGAGACAGTTTTCCTTGAAACAAGTTTT
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
*
4846488 GTCTCCCTTGAGACAGTTTCCCTTTAAACAAATTTT
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
* * * *
4846524 ATCTCTCTTGAGACAGTTTCCATCGAAACAAA
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAA
4846556 AGATTTATCT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (36 bp):
GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
Found at i:4846572 original size:38 final size:37
Alignment explanation
Indices: 4846453--4846591 Score: 133
Period size: 36 Copynumber: 3.8 Consensus size: 37
4846443 CTTGAGACAG
* *
4846453 TCTCCCTTGAGACAGTTTTCC-TTGAAAC-AAGTTTTG
1 TCTCCCTTGAGACAG-TTTCCATCGAAACAAAGTTTTA
* **
4846489 TCTCCCTTGAGACAGTTTCCCTTTAAACAAA-TTTTA
1 TCTCCCTTGAGACAGTTTCCATCGAAACAAAGTTTTA
* *
4846525 TCTCTCTTGAGACAGTTTCCATCGAAACAAAAGATTTA
1 TCTCCCTTGAGACAGTTTCCATCGAAAC-AAAGTTTTA
* * *
4846563 TCTCGCTTGAGATAATTT-CACTCGAAACA
1 TCTCCCTTGAGACAGTTTCCA-TCGAAACA
4846592 CAATATTTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
35 5 0.06
36 49 0.56
37 8 0.09
38 26 0.30
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (37 bp):
TCTCCCTTGAGACAGTTTCCATCGAAACAAAGTTTTA
Found at i:4846696 original size:43 final size:43
Alignment explanation
Indices: 4846622--4846719 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
4846612 CCTGATTTTC
4846622 AGGGGTTTCTTGAAGAAAAGCTTAAGAGACCATCGTGATATAT
1 AGGGGTTTCTTGAAGAAAAGCTTAAGAGACCATCGTGATATAT
* * * * * *
4846665 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
1 AGGGGTTTCTTGAAGAAAAGCTTAAGAGACCATCGTGATATAT
*
4846708 AGGGGTTCCTTG
1 AGGGGTTTCTTG
4846720 GTGACAACTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.32, T:0.30
Consensus pattern (43 bp):
AGGGGTTTCTTGAAGAAAAGCTTAAGAGACCATCGTGATATAT
Found at i:4846947 original size:132 final size:131
Alignment explanation
Indices: 4846766--4847011 Score: 438
Period size: 131 Copynumber: 1.9 Consensus size: 131
4846756 TTCTTAATGA
* *
4846766 GTAAGTCCTCTGGGCCATCCATAAGACATTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAAC
1 GTAAGTCCTCTGGGCCATCCATAAGACATTCAGTGCAGGATGTTTTCAAACGAGA-TTTAAAAAC
*
4846831 TAAGCCTTCTGGGGTTTCTTGATTTGTAAGTCCTCCGGGCCATCAATAAGTCTTCCGAGCATGAT
65 TAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTCCGGGCCATCAATAAGTCTTCCGAGCATGAT
4846896 GC
130 GC
*
4846898 GTAAGTCCTCTGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAACGAGATTTAAAAACT
1 GTAAGTCCTCTGGGCCATCCATAAGACATTCAGTGCAGGATGTTTTCAAACGAGATTTAAAAACT
*
4846963 AAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTCCGGGCCATCCATAAG
66 AAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTCCGGGCCATCAATAAG
4847012 ACCTTTGGGC
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
131 56 0.51
132 53 0.49
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (131 bp):
GTAAGTCCTCTGGGCCATCCATAAGACATTCAGTGCAGGATGTTTTCAAACGAGATTTAAAAACT
AAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTCCGGGCCATCAATAAGTCTTCCGAGCATGATG
C
Found at i:4853701 original size:24 final size:25
Alignment explanation
Indices: 4853668--4853715 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
4853658 TAAAAAAGCA
4853668 AAAAATATAAACGTTATAGAAAATT
1 AAAAATATAAACGTTATAGAAAATT
*
4853693 AAAAA-ATAAACTTTATAGAAAAT
1 AAAAATATAAACGTTATAGAAAAT
4853716 CAATTGTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (25 bp):
AAAAATATAAACGTTATAGAAAATT
Found at i:4854168 original size:37 final size:37
Alignment explanation
Indices: 4854092--4854168 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
4854082 TTTTTATATT
*
4854092 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
4854129 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
4854166 TTT
1 TTT
4854169 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:4856752 original size:37 final size:36
Alignment explanation
Indices: 4856676--4856752 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
4856666 TTTTTATATT
*
4856676 TTTAATTTTGTAAAAAAATTTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAA-TTATATAAATATTATCAA
* *
4856713 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
4856750 TTT
1 TTT
4856753 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 13 0.37
37 18 0.51
38 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:4856914 original size:18 final size:18
Alignment explanation
Indices: 4856891--4856953 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
4856881 CCCAGTAATC
4856891 TTATTCCCTAATAATCTT
1 TTATTCCCTAATAATCTT
*
4856909 TTATTCCCTGATAATCTT
1 TTATTCCCTAATAATCTT
* *
4856927 TGATTCTTACTAATAATCTT
1 TTATTC--CCTAATAATCTT
*
4856947 ATATTCC
1 TTATTCC
4856954 GTGAACCAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
18 22 0.61
20 14 0.39
ACGTcount: A:0.27, C:0.21, G:0.03, T:0.49
Consensus pattern (18 bp):
TTATTCCCTAATAATCTT
Found at i:4865375 original size:103 final size:103
Alignment explanation
Indices: 4865047--4865367 Score: 597
Period size: 103 Copynumber: 3.1 Consensus size: 103
4865037 GTCGAGGGTC
*
4865047 TATGTGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
4865112 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
4865150 TATGTGGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
4865215 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
4865253 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
4865318 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
4865356 TATGTGGTCCTT
1 TATGTGGTCCTT
4865368 ATGGACATTA
Statistics
Matches: 212, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 212 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:4865451 original size:23 final size:23
Alignment explanation
Indices: 4865384--4865453 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
4865374 ATTATTATAT
* *
4865384 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTATGA
4865407 GGCACTACGGTGCAATTCTATGA
1 GGCACTACGGTGCAATTCTATGA
* * *
4865430 GGCACTTCGGTGCATTTATATGA
1 GGCACTACGGTGCAATTCTATGA
4865453 G
1 G
4865454 TTGTGGTGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTATGA
Found at i:4872647 original size:15 final size:15
Alignment explanation
Indices: 4872623--4872674 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
4872613 TGAGACCTTA
*
4872623 CCCGCTCCGCATCCG
1 CCCGCCCCGCATCCG
4872638 CCCGCCCCGCATCCG
1 CCCGCCCCGCATCCG
* *
4872653 CCCGCCCCACATCTG
1 CCCGCCCCGCATCCG
4872668 CCCGCCC
1 CCCGCCC
4872675 AGCTAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.08, C:0.65, G:0.17, T:0.10
Consensus pattern (15 bp):
CCCGCCCCGCATCCG
Found at i:4873891 original size:22 final size:22
Alignment explanation
Indices: 4873863--4873907 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
4873853 TCACAAGTAT
*
4873863 TGCCTGAAATTTTAGAATGTTG
1 TGCCTGAAATTTTAAAATGTTG
4873885 TGCCTGAAATTTTAAAATGTTG
1 TGCCTGAAATTTTAAAATGTTG
4873907 T
1 T
4873908 TCCAAAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (22 bp):
TGCCTGAAATTTTAAAATGTTG
Found at i:4878309 original size:25 final size:25
Alignment explanation
Indices: 4878262--4878310 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
4878252 GTTTTTGCAT
* * *
4878262 TCTCTTATAATTTTACAAGTTCACA
1 TCTCTTAAAATCTTACAAATTCACA
*
4878287 TCTCTTAAAATCTTAGAAATTCAC
1 TCTCTTAAAATCTTACAAATTCAC
4878311 TATCCTAACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (25 bp):
TCTCTTAAAATCTTACAAATTCACA
Found at i:4879813 original size:193 final size:193
Alignment explanation
Indices: 4879484--4879870 Score: 747
Period size: 193 Copynumber: 2.0 Consensus size: 193
4879474 TGAGATTTAC
4879484 ATAGGACTTTACAGATTACCCACAAAAAATAAAAGTGGTGAAATTCGAATTTGGCCTCGGCAAGT
1 ATAGGACTTTACAGATTACCCACAAAAAATAAAAGTGGTGAAATTCGAATTTGGCCTCGGCAAGT
*
4879549 GAGGTAGTTTGTTTTAATTAGCTGACCTTATTCCCATATGTAATGGGATAAGTGGAGGTAGGATA
66 GAGGTAGTTTGTTTTAATTAACTGACCTTATTCCCATATGTAATGGGATAAGTGGAGGTAGGATA
* *
4879614 ATAGACTGCCAACGCCAGGTTGAGAGCAACTTCCGTGGGAGACCTCTGACAGTCAGAATTATG
131 ATAGACTGCCAACGCCAGGTTAAGAGCAACTTCCGTGAGAGACCTCTGACAGTCAGAATTATG
4879677 ATAGGACTTTACAGATTACCCACAAAAAATAAAAGTGGTGAAATTCGAATTTGGCCTCGGCAAGT
1 ATAGGACTTTACAGATTACCCACAAAAAATAAAAGTGGTGAAATTCGAATTTGGCCTCGGCAAGT
4879742 GAGGTAGTTTGTTTTAATTAACTGACCTTATTCCCATATGTAATGGGATAAGTGGAGGTAGGATA
66 GAGGTAGTTTGTTTTAATTAACTGACCTTATTCCCATATGTAATGGGATAAGTGGAGGTAGGATA
4879807 ATAGACTGCCAACGCCAGGTTAAGAGCAACTTCCGTGAGAGACCTCTGACAGTCAGAATTATG
131 ATAGACTGCCAACGCCAGGTTAAGAGCAACTTCCGTGAGAGACCTCTGACAGTCAGAATTATG
4879870 A
1 A
4879871 ATTGCCCACC
Statistics
Matches: 191, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
193 191 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (193 bp):
ATAGGACTTTACAGATTACCCACAAAAAATAAAAGTGGTGAAATTCGAATTTGGCCTCGGCAAGT
GAGGTAGTTTGTTTTAATTAACTGACCTTATTCCCATATGTAATGGGATAAGTGGAGGTAGGATA
ATAGACTGCCAACGCCAGGTTAAGAGCAACTTCCGTGAGAGACCTCTGACAGTCAGAATTATG
Found at i:4884797 original size:23 final size:23
Alignment explanation
Indices: 4884771--4884815 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
4884761 CACCACAGCT
*
4884771 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
4884794 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
4884816 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:4885033 original size:149 final size:146
Alignment explanation
Indices: 4884791--4885094 Score: 457
Period size: 149 Copynumber: 2.1 Consensus size: 146
4884781 CACCGAAGTG
*
4884791 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACGTATTATTCCTTAAG
1 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAG
* * * * * *
4884856 AATCATATACATATACTAGGGATCAAGTATGTGTCTTTC-AAGACTTCACACATGTTCCACAGAA
66 AATCATATACATATACTAAGGACCAAGTATGTG-C-CTCAAAGACCTCACAAATGTTCCAAAG-A
*
4884920 TATATATATATCCCGAAAGA
128 -ATATACATATCCCGAAAGA
*
4884940 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCCTAAGGACCACATATTATTCCTTAAG
1 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAG
*
4885005 AATCATATACATATACTAAGGACCAAGTATGTGCCTCAAAGACCTCATAAATGTTCCAAAGAATA
66 AATCATATACATATACTAAGGACCAAGTATGTGCCTCAAAGACCTCACAAATGTTCCAAAGAATA
* *
4885070 TACATGTCCCGAAGGA
131 TACATATCCCGAAAGA
4885086 CCGCGTAGA
1 CCGCGTAGA
4885095 CCCTCGACTC
Statistics
Matches: 142, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
146 25 0.18
147 3 0.02
148 20 0.14
149 94 0.66
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (146 bp):
CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAG
AATCATATACATATACTAAGGACCAAGTATGTGCCTCAAAGACCTCACAAATGTTCCAAAGAATA
TACATATCCCGAAAGA
Found at i:4886554 original size:44 final size:45
Alignment explanation
Indices: 4886490--4886592 Score: 156
Period size: 44 Copynumber: 2.3 Consensus size: 45
4886480 TGCACTACAC
*
4886490 CATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTT-AATGG
1 CATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAT-G
* *
4886534 GATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATT
1 CATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATG
4886579 CATGCATCGATGCA
1 CATGCATCGATGCA
4886593 CTGCATGTGC
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
44 29 0.55
45 21 0.40
46 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (45 bp):
CATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATG
Found at i:4902353 original size:14 final size:14
Alignment explanation
Indices: 4902334--4902426 Score: 84
Period size: 14 Copynumber: 6.6 Consensus size: 14
4902324 CTCGAGTACA
4902334 TATTTAATAATAAT
1 TATTTAATAATAAT
*
4902348 TATTTAA-ATTTAAT
1 TATTTAATA-ATAAT
*
4902362 TATTTAACT-TTAAT
1 TATTTAA-TAATAAT
*
4902376 GATTTAATAATAAT
1 TATTTAATAATAAT
*
4902390 TATTTAACT-TTAAT
1 TATTTAA-TAATAAT
*
4902404 GATTTAATAATAAT
1 TATTTAATAATAAT
4902418 TACTTTAAT
1 TA-TTTAAT
4902427 GATTTAACTT
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
13 3 0.05
14 54 0.84
15 7 0.11
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (14 bp):
TATTTAATAATAAT
Found at i:4902433 original size:37 final size:37
Alignment explanation
Indices: 4902386--4902642 Score: 322
Period size: 37 Copynumber: 6.7 Consensus size: 37
4902376 GATTTAATAA
*
4902386 TAATTATTTAACTTTAATGATTTAATAATAATTACTT
1 TAATGATTTAACTTTAATGATTTAATAATAATTACTT
4902423 TAATGATTTAACTTTAATGATTTAATAATAATTACTT
1 TAATGATTTAACTTTAATGATTTAATAATAATTACTT
*
4902460 TAATGATTTAATTTTAATGATTTAATAATAATTACTT
1 TAATGATTTAACTTTAATGATTTAATAATAATTACTT
* *
4902497 TAATGATTTAATTTTAATGATTTAATGAT--TTAACTT
1 TAATGATTTAACTTTAATGATTTAATAATAATT-ACTT
4902533 TAATGATTTAATAATAATTACTTTAATGATTTAATAATAATTACTT
1 TAATGA--T--T--T-A--ACTTTAATGATTTAATAATAATTACTT
* *
4902579 TAATGATTTAACTTTAATGCTTTAATAATAATTGCTT
1 TAATGATTTAACTTTAATGATTTAATAATAATTACTT
*
4902616 TAATAATAATT-ACTTTAATGATTTAAT
1 TAATGAT--TTAACTTTAATGATTTAAT
4902643 GATTTAATAA
Statistics
Matches: 197, Mismatches: 9, Indels: 27
0.85 0.04 0.12
Matches are distributed among these distances:
35 2 0.01
36 10 0.05
37 131 0.66
38 16 0.08
39 3 0.02
40 2 0.01
42 2 0.01
43 1 0.01
44 1 0.01
45 17 0.09
46 10 0.05
47 2 0.01
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (37 bp):
TAATGATTTAACTTTAATGATTTAATAATAATTACTT
Found at i:4902436 original size:14 final size:14
Alignment explanation
Indices: 4902344--4902693 Score: 174
Period size: 14 Copynumber: 27.7 Consensus size: 14
4902334 TATTTAATAA
* *
4902344 TAATTATTTAAATT
1 TAATGATTTAACTT
*
4902358 TAATTATTTAACTT
1 TAATGATTTAACTT
*
4902372 TAATGATTTAA-TAA
1 TAATGATTTAACT-T
*
4902386 TAATTATTTAACTT
1 TAATGATTTAACTT
4902400 TAATGATTTAA---
1 TAATGATTTAACTT
*
4902411 TAAT-AATT-ACTT
1 TAATGATTTAACTT
4902423 TAATGATTTAACTT
1 TAATGATTTAACTT
4902437 TAATGATTTAA---
1 TAATGATTTAACTT
*
4902448 TAAT-AATT-ACTT
1 TAATGATTTAACTT
*
4902460 TAATGATTTAATTT
1 TAATGATTTAACTT
4902474 TAATGATTTAA---
1 TAATGATTTAACTT
*
4902485 TAAT-AATT-ACTT
1 TAATGATTTAACTT
*
4902497 TAATGATTTAATTT
1 TAATGATTTAACTT
4902511 TAATG-----A-TT
1 TAATGATTTAACTT
4902519 TAATGATTTAACTT
1 TAATGATTTAACTT
4902533 TAATGATTTAA---
1 TAATGATTTAACTT
*
4902544 TAAT-AATT-ACTT
1 TAATGATTTAACTT
4902556 TAATGATTTAA---
1 TAATGATTTAACTT
*
4902567 TAAT-AATT-ACTT
1 TAATGATTTAACTT
4902579 TAATGATTTAACTT
1 TAATGATTTAACTT
* *
4902593 TAATGCTTTAA-TAA
1 TAATGATTTAACT-T
*
4902607 TAATTGCTTTAA---
1 TAA-TGATTTAACTT
*
4902619 TAAT-AATT-ACTT
1 TAATGATTTAACTT
*
4902631 TAATGATTTAATGATT
1 TAATGATTTAA--CTT
*
4902647 TAATAATTTAA---
1 TAATGATTTAACTT
*
4902658 TAAT-AATT-ACTT
1 TAATGATTTAACTT
4902670 TAATGATTTAACTT
1 TAATGATTTAACTT
*
4902684 TAATGTTTTA
1 TAATGATTTA
4902694 GGGTCTGTTT
Statistics
Matches: 261, Mismatches: 28, Indels: 94
0.68 0.07 0.25
Matches are distributed among these distances:
8 7 0.03
9 8 0.03
10 20 0.08
11 25 0.10
12 31 0.12
13 24 0.09
14 125 0.48
15 9 0.03
16 12 0.05
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.50
Consensus pattern (14 bp):
TAATGATTTAACTT
Found at i:4902559 original size:23 final size:23
Alignment explanation
Indices: 4902509--4902642 Score: 137
Period size: 23 Copynumber: 5.6 Consensus size: 23
4902499 ATGATTTAAT
*
4902509 TTTAATGATTTAATGAT--TTAAC
1 TTTAATGATTTAATAATAATT-AC
4902531 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
4902554 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
** *
4902577 TTTAATGATTTAACTTTAATGCTTTAA
1 TTTAATGATTTAA---TAAT-AATTAC
* *
4902604 TAATAATTGCTTTAATAATAATTAC
1 T-TTAA-TGATTTAATAATAATTAC
4902629 TTTAATGATTTAAT
1 TTTAATGATTTAAT
4902643 GATTTAATAA
Statistics
Matches: 93, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
22 16 0.17
23 46 0.49
24 5 0.05
25 4 0.04
26 8 0.09
27 4 0.04
28 3 0.03
29 7 0.08
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTAATGATTTAATAATAATTAC
Found at i:4902616 original size:15 final size:15
Alignment explanation
Indices: 4902596--4902634 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
4902586 TTAACTTTAA
4902596 TGCTTTAATAATAAT
1 TGCTTTAATAATAAT
4902611 TGCTTTAATAATAAT
1 TGCTTTAATAATAAT
*
4902626 TACTTTAAT
1 TGCTTTAAT
4902635 GATTTAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (15 bp):
TGCTTTAATAATAAT
Found at i:4902642 original size:8 final size:8
Alignment explanation
Indices: 4902629--4902680 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
4902619 TAATAATTAC
4902629 TTTAATGA
1 TTTAATGA
4902637 TTTAATGA
1 TTTAATGA
*
4902645 TTTAATAA
1 TTTAATGA
4902653 TTTAAT-A
1 TTTAATGA
* *
4902660 -ATAATTA
1 TTTAATGA
4902667 CTTTAATGA
1 -TTTAATGA
4902676 TTTAA
1 TTTAA
4902681 CTTTAATGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 4 0.11
7 2 0.05
8 26 0.70
9 5 0.14
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (8 bp):
TTTAATGA
Found at i:4902803 original size:42 final size:42
Alignment explanation
Indices: 4902744--4902859 Score: 223
Period size: 42 Copynumber: 2.8 Consensus size: 42
4902734 TTTCCCCGAA
*
4902744 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
4902786 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
4902828 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCC
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCC
4902860 AGAATGTAAT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.46
Consensus pattern (42 bp):
TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
Found at i:4903099 original size:22 final size:23
Alignment explanation
Indices: 4903052--4903112 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
4903042 TAATTATTAA
* *
4903052 AATATTTAAAAT-ATAT-TTATT
1 AATATTTATAATAATATAATATT
4903073 AATATTTATAATAATATAATATT
1 AATATTTATAATAATATAATATT
* *
4903096 -ATATTTTTAATATTATA
1 AATATTTATAATAATATA
4903113 TAAAATAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.32
22 19 0.56
23 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTATAATAATATAATATT
Found at i:4903128 original size:31 final size:32
Alignment explanation
Indices: 4903063--4903141 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 32
4903053 ATATTTAAAA
4903063 TATATTTATTAATATTTATAATAATATAATAT
1 TATATTTATTAATATTTATAATAATATAATAT
*
4903095 TATATTT-TTAATA-TTAT-ATAAAATAATCAAT
1 TATATTTATTAATATTTATAATAATATAAT--AT
*
4903126 TATATTATAATAATAT
1 TATATT-TATTAATAT
4903142 AAGATATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
29 9 0.22
30 4 0.10
31 14 0.35
32 8 0.20
33 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAATATAATAT
Found at i:4903194 original size:29 final size:29
Alignment explanation
Indices: 4903157--4903224 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
4903147 ATTATATTTT
* * *
4903157 TATTTTAATAATATA-AAT-TTTTTTATA
1 TATTTCAATAATAAATAATATTATTTATA
*
4903184 TATTT-AATAATGAATAATATTATTTATA
1 TATTTCAATAATAAATAATATTATTTATA
4903212 TATTTCAATAATA
1 TATTTCAATAATA
4903225 TTTTAGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 7 0.21
27 8 0.24
28 13 0.38
29 6 0.18
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
TATTTCAATAATAAATAATATTATTTATA
Found at i:4903489 original size:20 final size:20
Alignment explanation
Indices: 4903391--4903480 Score: 162
Period size: 20 Copynumber: 4.5 Consensus size: 20
4903381 TTTCCAGATG
4903391 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
4903411 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
4903431 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
4903451 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
4903471 TTTTCCAGAA
1 TTTTCCAGAA
4903481 TTCAAATTCC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:4903499 original size:15 final size:15
Alignment explanation
Indices: 4903463--4903514 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
4903453 TTACAGAAAT
**
4903463 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
4903478 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
4903492 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
4903507 GTAATTCA
1 GTAATTCA
4903515 TTTTCTGGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:4903611 original size:23 final size:23
Alignment explanation
Indices: 4903583--4903925 Score: 102
Period size: 23 Copynumber: 14.6 Consensus size: 23
4903573 GATTTAATGA
4903583 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
** *
4903606 TTTAATGATTTAATTTTAATGA-
1 TTTAATGATTTAATAATAATTAC
* *
4903628 TTTAATGATTTAACT-TTAATGA-
1 TTTAATGATTTAA-TAATAATTAC
* * * *
4903650 TTTAATAATAATTACT-TTAATGA-
1 TTTAATGAT--TTAATAATAATTAC
* * *
4903673 TTTAATAATAATTACTTTAATGATTTAAC
1 TTTAATGAT--TTA--ATAAT-AATT-AC
*
4903702 TTTAATGCTTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
** *
4903725 TTTAATGATTTAATTTTAATGA-
1 TTTAATGATTTAATAATAATTAC
* *
4903747 TTTAATGATTTAACT-TTAATGA-
1 TTTAATGATTTAA-TAATAATTAC
* * * *
4903769 TTTAATAATAATTACT-TTAATGA-
1 TTTAATGAT--TTAATAATAATTAC
* * *
4903792 TTTAATAATAATTACTTTAATGATTTAAC
1 TTTAATGAT--TTA--ATAAT-AATT-AC
*
4903821 TTTAATGCTTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
* * *
4903844 TTTAATGATTGAATGAT--TTAA
1 TTTAATGATTTAATAATAATTAC
* * *
4903865 TAATAATTACTTTAATGAT--TTAAC
1 T-TTAATGA-TTTAATAATAATT-AC
*
4903889 TTTAATGCTTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
4903912 TTTAATGATTTAAT
1 TTTAATGATTTAAT
4903926 GATTTAATAA
Statistics
Matches: 257, Mismatches: 40, Indels: 46
0.75 0.12 0.13
Matches are distributed among these distances:
21 4 0.02
22 69 0.27
23 130 0.51
24 16 0.06
25 10 0.04
26 2 0.01
27 10 0.04
28 2 0.01
29 14 0.05
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTAATGATTTAATAATAATTAC
Found at i:4903633 original size:37 final size:37
Alignment explanation
Indices: 4903553--4903981 Score: 458
Period size: 37 Copynumber: 11.4 Consensus size: 37
4903543 AAACAGACCC
4903553 TTAATAATAATTACTTTAATGATTTAATGATTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAAT--TTTAATGAT
4903592 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
*
4903629 TTAATGAT--TTAACTTTAATGATTTAATAATAATTACTTTAATGAT
1 TTAATAATAATT-ACTTTAATGA--T--T--TAA-T--TTTAATGAT
* *
4903674 TTAATAATAATTACTTTAATGATTTAACTTTAATGCT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
4903711 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
*
4903748 TTAATGAT--TTAACTTTAATGATTTAATAATAATTACTTTAATGAT
1 TTAATAATAATT-ACTTTAATGA--T--T--TAA-T--TTTAATGAT
* *
4903793 TTAATAATAATTACTTTAATGATTTAACTTTAATGCT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
*
4903830 TTAATAATAATTACTTTAATG-----A-TTGAATGAT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
* *
4903861 TTAATAATAATTACTTTAATGATTTAACTTTAATGCT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
4903898 TTAATAATAATTACTTTAATG-----A-TTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
*
4903929 TTAATAATAATTACTTTAATGATTTAATTTTAATAAT
1 TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
4903966 TTAATAATAATTACTT
1 TTAATAATAATTACTT
4903982 AATTTTAATG
Statistics
Matches: 338, Mismatches: 16, Indels: 74
0.79 0.04 0.17
Matches are distributed among these distances:
31 57 0.17
32 2 0.01
35 4 0.01
36 22 0.07
37 147 0.43
38 2 0.01
39 28 0.08
40 8 0.02
42 8 0.02
43 2 0.01
44 2 0.01
45 32 0.09
46 20 0.06
47 4 0.01
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (37 bp):
TTAATAATAATTACTTTAATGATTTAATTTTAATGAT
Found at i:4903715 original size:68 final size:66
Alignment explanation
Indices: 4903620--4904009 Score: 386
Period size: 68 Copynumber: 6.0 Consensus size: 66
4903610 ATGATTTAAT
*
4903620 TTTAATGATTTAATGATTTAA--CTTTAATGATTTAATAATAATTACTTTAATGATTTAATAATA
1 TTTAATGATTTAA--CTTTAATGCTTTAAT-ATTTAAT-ATAATTACTTTAATGATTTAATAATA
4903683 ATTAC
62 ATTAC
** *
4903688 TTTAATGATTTAACTTTAATGCTTT-A-A--T-A-ATAATTACTTTAATGATTTAATTTTAATGA
1 TTTAATGATTTAACTTTAATGCTTTAATATTTAATATAATTACTTTAATGATTTAATAATAATTA
4903747 -
66 C
*
4903747 TTTAATGATTTAACTTTAATGATTT-A-A--T-A-ATAATTACTTTAATGATTTAATAATAATTA
1 TTTAATGATTTAACTTTAATGCTTTAATATTTAATATAATTACTTTAATGATTTAATAATAATTA
4903806 C
66 C
* * * *
4903807 TTTAATGATTTAACTTTAATGCTTTAATAATAATTACTTTAATGA-TTGAATGATTTAATAATAA
1 TTTAATGATTTAACTTTAATGCTTTAAT-AT--TTAATATAATTACTTTAATGATTTAATAATAA
4903871 TTAC
63 TTAC
* * *
4903875 TTTAATGATTTAACTTTAATGCTTTAATAATAATTACTTTAATGA-TTTAATGATTTAATAATAA
1 TTTAATGATTTAACTTTAATGCTTTAAT-AT--TTAATATAATTACTTTAATGATTTAATAATAA
4903939 TTAC
63 TTAC
* ** * * *
4903943 TTTAATGATTTAATTTTAATAATTTAATA-ATAAT-TACTTAATTTTAATGATTTAATAATAATT
1 TTTAATGATTTAACTTTAATGCTTTAATATTTAATATAATT-ACTTTAATGATTTAATAATAATT
4904006 AC
65 AC
4904008 TT
1 TT
4904010 GACTTTAATG
Statistics
Matches: 287, Mismatches: 21, Indels: 31
0.85 0.06 0.09
Matches are distributed among these distances:
59 55 0.19
60 51 0.18
61 1 0.00
62 1 0.00
63 5 0.02
64 4 0.01
65 26 0.09
66 5 0.02
67 3 0.01
68 131 0.46
69 5 0.02
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (66 bp):
TTTAATGATTTAACTTTAATGCTTTAATATTTAATATAATTACTTTAATGATTTAATAATAATTA
C
Found at i:4903946 original size:23 final size:23
Alignment explanation
Indices: 4903620--4904009 Score: 228
Period size: 23 Copynumber: 17.1 Consensus size: 23
4903610 ATGATTTAAT
*
4903620 TTTAATGATTTAATGAT--TTAAC
1 TTTAATGATTTAATAATAATT-AC
4903642 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
4903665 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
* *
4903688 TTTAATGATTTAACT-TTAA-TGC
1 TTTAATGATTTAA-TAATAATTAC
* * * *
4903710 TTTAATAATAATTACT-TTAATGA-
1 TTTAATGAT--TTAATAATAATTAC
*
4903733 TTTAAT--TTTAATGATTTAATGATTTAAC
1 TTTAATGATTT-A--A--TAAT-AATT-AC
4903761 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
4903784 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
* *
4903807 TTTAATGATTTAACT-TTAA-TGC
1 TTTAATGATTTAA-TAATAATTAC
* * * *
4903829 TTTAATAATAATTACT-TTAATGA-
1 TTTAATGAT--TTAATAATAATTAC
*
4903852 TTGAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
* *
4903875 TTTAATGATTTAACT-TTAA-TGC
1 TTTAATGATTTAA-TAATAATTAC
* * * *
4903897 TTTAATAATAATTACT-TTAATGA-
1 TTTAATGAT--TTAATAATAATTAC
4903920 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
** *
4903943 TTTAATGATTTAATTTTAA-TAA
1 TTTAATGATTTAATAATAATTAC
* * *
4903965 TTTAAT-A-ATAAT--TACTTAAT
1 TTTAATGATTTAATAATAATT-AC
4903985 TTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATAATAATTAC
4904008 TT
1 TT
4904010 GACTTTAATG
Statistics
Matches: 290, Mismatches: 43, Indels: 69
0.72 0.11 0.17
Matches are distributed among these distances:
18 2 0.01
19 3 0.01
20 12 0.04
21 11 0.04
22 68 0.23
23 153 0.53
24 22 0.08
25 5 0.02
26 2 0.01
27 2 0.01
28 6 0.02
29 1 0.00
30 3 0.01
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTAATGATTTAATAATAATTAC
Found at i:4903983 original size:28 final size:28
Alignment explanation
Indices: 4903952--4904024 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
4903942 CTTTAATGAT
*
4903952 TTAATTTTAATAATTTAATAATAATTAC
1 TTAATTTTAATGATTTAATAATAATTAC
4903980 TTAATTTTAATGATTTAATAATAATTAC
1 TTAATTTTAATGATTTAATAATAATTAC
* *
4904008 TTGACTTTAATGATTTA
1 TTAATTTTAATGATTTA
4904025 TATTTACTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (28 bp):
TTAATTTTAATGATTTAATAATAATTAC
Found at i:4904513 original size:6 final size:6
Alignment explanation
Indices: 4904498--4904540 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
4904488 GGTGAGAAGA
*
4904498 ACTCCT ACTCCC ACTCCC ACTCCC ACTCCC ACTCCC ACTCCC A
1 ACTCCC ACTCCC ACTCCC ACTCCC ACTCCC ACTCCC ACTCCC A
4904541 GTCCTTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.19, C:0.63, G:0.00, T:0.19
Consensus pattern (6 bp):
ACTCCC
Found at i:4906585 original size:172 final size:173
Alignment explanation
Indices: 4906286--4906612 Score: 559
Period size: 172 Copynumber: 1.9 Consensus size: 173
4906276 AATATAATAT
*
4906286 GATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTTGCAATTTAATCACTAAATTTATAA
1 GATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATTTATAA
* *
4906351 ATTCTTTCAAATTTAACCAATTAAGCATATTAATACTAAATTCAAGCATAGTATACCAACTTTTT
66 ATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAACTTTTA
4906416 ATAATTTACTCTAATTCCTTAAATTCTTCAAATTTTACAAAAC
131 ATAATTTACTCTAATTCCTTAAATTCTTCAAATTTTACAAAAC
*
4906459 GATCCCTAATTACTATTTGGTTCTCAACATTTTCAAACTTAGCAATTTAATC-CATAAATTT-TA
1 GATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCAC-TAAATTTATA
* * *
4906522 AATTCTTTCTAATTTAACCAATTAAGCATACTAATACTAAATTCCAGCATAGTATAGCAACTTTT
65 AATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAACTTTT
*
4906587 AATAATTTACTCTTATTCCTTAAATT
130 AATAATTTACTCTAATTCCTTAAATT
4906613 TTACAAAACG
Statistics
Matches: 145, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
172 88 0.61
173 57 0.39
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (173 bp):
GATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATTTATAA
ATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAACTTTTA
ATAATTTACTCTAATTCCTTAAATTCTTCAAATTTTACAAAAC
Found at i:4906930 original size:41 final size:41
Alignment explanation
Indices: 4906873--4906950 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
4906863 CCCTCTCAGG
4906873 CTCTCACTGCTTCTGTAATTGTGAATTGCCTCAGCCCCAAA
1 CTCTCACTGCTTCTGTAATTGTGAATTGCCTCAGCCCCAAA
4906914 CTCTCACTGCTTCTGTAATTGTGAATTGCCTCAGCCC
1 CTCTCACTGCTTCTGTAATTGTGAATTGCCTCAGCCC
4906951 GAGCAGTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.33
Consensus pattern (41 bp):
CTCTCACTGCTTCTGTAATTGTGAATTGCCTCAGCCCCAAA
Found at i:4907235 original size:34 final size:34
Alignment explanation
Indices: 4907192--4907276 Score: 152
Period size: 34 Copynumber: 2.5 Consensus size: 34
4907182 CATGCACAGC
*
4907192 ACTGAAGACGCCGAGATTTCCTACGAAGAATCCA
1 ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
*
4907226 ACTGAAGACGCCGAGAGTTCCTATGAAGAATCCA
1 ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
4907260 ACTGAAGACGCCGAGAG
1 ACTGAAGACGCCGAGAG
4907277 ATCAATCATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (34 bp):
ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
Found at i:4907365 original size:3 final size:3
Alignment explanation
Indices: 4907357--4907406 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
4907347 TTTTTACCCA
*
4907357 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4907405 TA
1 TA
4907407 AATATATATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:4908895 original size:13 final size:13
Alignment explanation
Indices: 4908879--4908925 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
4908869 ATATAATAAA
4908879 TAAATATTTATTT
1 TAAATATTTATTT
*
4908892 TAAATAAATTATTT
1 TAAAT-ATTTATTT
4908906 T-AATATTTAGTTT
1 TAAATATTTA-TTT
*
4908919 TCAATAT
1 TAAATAT
4908926 CAAAGAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 4 0.14
13 12 0.41
14 13 0.45
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:4909005 original size:97 final size:97
Alignment explanation
Indices: 4908891--4909086 Score: 222
Period size: 98 Copynumber: 2.0 Consensus size: 97
4908881 AATATTTATT
*
4908891 TTAAATAAATTATTTTAATATT-TAGTTT-TCAATATCAAAGAAAAG-GACAGTCTTAAAACAAC
1 TTAAACAAATTATTTTAA-ATTATA-TTTATCAATATCAAAGAAAAGAG-CAGTCTTAAAACAAC
* *
4908953 TGGATGTCCTATTCTGATATTTTAAAATTAAA-AAA
63 TAGAAGTCCTATTCTGATATTTTAAAA-TAAATAAA
* * *
4908988 TTAAACAATATTA-TTTAAATTAATATTTATCAATATCAAAGAAAAGAGCTGTCTTAAGACACCT
1 TTAAACAA-ATTATTTTAAATT-ATATTTATCAATATCAAAGAAAAGAGCAGTCTTAAAACAACT
* * *
4909052 AGAAGTTCTTTTCTGATATTTTTAAATAAATAAA
64 AGAAGTCCTATTCTGATATTTTAAAATAAATAAA
4909086 T
1 T
4909087 ATTTTTTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
96 3 0.04
97 19 0.23
98 61 0.73
99 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.38
Consensus pattern (97 bp):
TTAAACAAATTATTTTAAATTATATTTATCAATATCAAAGAAAAGAGCAGTCTTAAAACAACTAG
AAGTCCTATTCTGATATTTTAAAATAAATAAA
Found at i:4909518 original size:30 final size:30
Alignment explanation
Indices: 4909482--4909538 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
4909472 AAATTGCGTT
*
4909482 AAAGACGCCGAGATATCCA-GCCTTCCATGC
1 AAAGACGCCGAGAGATCCACG-CTTCCATGC
4909512 AAAGACGCCGAGAGATCCACGCTTCCA
1 AAAGACGCCGAGAGATCCACGCTTCCA
4909539 CATCTGCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.32, C:0.33, G:0.21, T:0.14
Consensus pattern (30 bp):
AAAGACGCCGAGAGATCCACGCTTCCATGC
Found at i:4913189 original size:21 final size:21
Alignment explanation
Indices: 4913148--4913205 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
4913138 AAGAAAAAGA
* *
4913148 GAAGTAGAAGAAAGGAAGGAAG
1 GAAGAAGAAG-AAGAAAGGAAG
*
4913170 GAAGAAGAATAAGAAAGGAAG
1 GAAGAAGAAGAAGAAAGGAAG
4913191 GAAGAAGAAGAAGAA
1 GAAGAAGAAGAAGAA
4913206 GAAAGAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 24 0.75
22 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.36, T:0.03
Consensus pattern (21 bp):
GAAGAAGAAGAAGAAAGGAAG
Found at i:4913443 original size:18 final size:19
Alignment explanation
Indices: 4913420--4913465 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
4913410 GCGATGGTGT
4913420 TATTATTATTTAATAA-AA
1 TATTATTATTTAATAATAA
4913438 TATTATTATTTAATAATAA
1 TATTATTATTTAATAATAA
4913457 -ATTATTATT
1 TATTATTATT
4913466 AAATTACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTATTATTTAATAATAA
Found at i:4921359 original size:29 final size:30
Alignment explanation
Indices: 4921306--4921378 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
4921296 AGATGAGATA
* *
4921306 AAAAAATATATATATTTATATTAAATAAGAAT
1 AAAAAAT-TATAT-TTTATAATAAATAACAAT
4921338 AAAAAATTATATTTT-TAATAAATAACAAT
1 AAAAAATTATATTTTATAATAAATAACAAT
*
4921367 AAAATA-TATATT
1 AAAAAATTATATT
4921379 AAGTTAAGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 6 0.16
29 17 0.45
30 3 0.08
31 5 0.13
32 7 0.18
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (30 bp):
AAAAAATTATATTTTATAATAAATAACAAT
Found at i:4922271 original size:2 final size:2
Alignment explanation
Indices: 4922264--4922324 Score: 108
Period size: 2 Copynumber: 31.5 Consensus size: 2
4922254 CTTGTTTCAT
4922264 TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4922304 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
4922325 TGTTATACCT
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 55 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4924548 original size:2 final size:2
Alignment explanation
Indices: 4924543--4924572 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4924533 ACACACACAC
4924543 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4924573 CTAAAAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4925233 original size:44 final size:41
Alignment explanation
Indices: 4925174--4925305 Score: 138
Period size: 44 Copynumber: 3.0 Consensus size: 41
4925164 TTATTAAATA
4925174 ATTTTAAATAATTTAATAAGGTTATTTATTTTTAAAAATAATTT
1 ATTTTAAATAATTTAATAAGGTTATTTA-TTTT-AAAAT-ATTT
* *
4925218 ATTTTAAATATTTTAAAAATATGGTTATTTATTTTAAAATATTT
1 ATTTTAAATAATTT---AATAAGGTTATTTATTTTAAAATATTT
*
4925262 ATTTTAAATAATTTATTATTATGGATTGATTTATTTTAAAATAT
1 ATTTTAAATAATTTA--A-TAAGG-TT-ATTTATTTTAAAATAT
4925306 GGTAGATTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
41 1 0.01
43 1 0.01
44 35 0.45
45 7 0.09
46 20 0.26
47 13 0.17
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (41 bp):
ATTTTAAATAATTTAATAAGGTTATTTATTTTAAAATATTT
Found at i:4925248 original size:25 final size:23
Alignment explanation
Indices: 4925188--4925256 Score: 58
Period size: 25 Copynumber: 3.0 Consensus size: 23
4925178 TAAATAATTT
*
4925188 AATAAGGTTATTT-ATTTTTAAA
1 AATATGGTTATTTAATTTTTAAA
4925210 AATAAT--TTATTTTAAATATTTTAAA
1 AAT-ATGGTTA-TTT-AAT-TTTTAAA
4925235 AATATGGTTATTT-A-TTTTAAA
1 AATATGGTTATTTAATTTTTAAA
4925256 A
1 A
4925257 TATTTATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
21 11 0.28
22 6 0.15
23 2 0.05
24 4 0.10
25 13 0.33
26 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (23 bp):
AATATGGTTATTTAATTTTTAAA
Found at i:4925278 original size:18 final size:15
Alignment explanation
Indices: 4925242--4925303 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 15
4925232 AAAAATATGG
4925242 TTATTTATTTTAAAA
1 TTATTTATTTTAAAA
4925257 -TATTTATTTT-AAA
1 TTATTTATTTTAAAA
* **
4925270 TAATTTATTATTATGGA
1 TTATTTATT-TTA-AAA
4925287 TTGATTTATTTTAAAA
1 TT-ATTTATTTTAAAA
4925303 T
1 T
4925304 ATGGTAGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
13 3 0.08
14 17 0.47
15 2 0.06
16 2 0.06
17 5 0.14
18 7 0.19
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (15 bp):
TTATTTATTTTAAAA
Found at i:4925351 original size:51 final size:53
Alignment explanation
Indices: 4925258--4925699 Score: 323
Period size: 51 Copynumber: 8.8 Consensus size: 53
4925248 ATTTTAAAAT
*
4925258 ATTTATTTTAAATAATTTATTATTATGGATTGATTTATTTTAAAATATGGTAG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGTAG
4925311 ATTTATTTTAAATAA-TTATTA-TATGGATTGATTTATTTTAAAATATGG-ATG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGTA-G
*
4925362 ATTTA--TTAAATAA-TTATTAGTAT-GATTGATTTA-TTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGG-TAG
*
4925411 ATTTA-TTTAAATAATTTATTAATAT-GATTGA-TTATTTTAAAATAT-G--G
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGTAG
* *
4925458 ATTGATTTT---T-ATTGTATT-GTATGGATTGATTTATTTT-AAATAAT--T-T
1 ATTTATTTTAAATAATT-TATTAGTATGGATTGATTTATTTTAAAAT-ATGGTAG
* * * * * * *** *
4925504 A-TTAGTATGAATGATTATTTTAAATATGGA-TGATTTATTATGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATT-TATT-AGTATGGATTGATTTATT-T-TA-AAATATGG-TAG
*
4925561 ATTTATTTTAAATAATTTATTAGTAT-GA-TGA-TTA-TTTAAAATA-GATTA-
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG-GTAG
*
4925609 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTA-TTTAAAATA---TAG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGTAG
* *
4925658 A-TTAATTT--ATTATTGTAGTT-GTATGGATTGATTTATTTTAAA
1 ATTTATTTTAAATAATT-TA-TTAGTATGGATTGATTTATTTTAAA
4925700 TAATTTATTA
Statistics
Matches: 324, Mismatches: 29, Indels: 77
0.75 0.07 0.18
Matches are distributed among these distances:
44 6 0.02
45 19 0.06
46 15 0.05
47 21 0.06
48 58 0.18
49 41 0.13
50 30 0.09
51 79 0.24
52 8 0.02
53 18 0.06
54 4 0.01
55 5 0.02
56 5 0.02
57 4 0.01
58 11 0.03
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (53 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGTAG
Found at i:4925488 original size:75 final size:75
Alignment explanation
Indices: 4925402--4925603 Score: 324
Period size: 75 Copynumber: 2.7 Consensus size: 75
4925392 TTATTTAAAA
*
4925402 TATGGATTGATTTA-TTTAAATAATTTATTAATATGATTGATTATTTTAAAATATGGATTGATTT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGA-TGATTATTTTAAAATATGGA-TGATTT
4925466 -TTATTGTA-TTG
64 ATTA-TGTAGTTG
4925477 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATGATTATTTT-AAATATGGATGATTTA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATG-ATGATTATTTTAAAATATGGATGATTTA
4925541 TTATGTAGTTG
65 TTATGTAGTTG
4925552 TATGGATTGATTTATTTTAAATAATTTATTAGTATGATGATTA-TTTAAAATA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGATGATTATTTTAAAATA
4925604 GATTAATTTA
Statistics
Matches: 121, Mismatches: 1, Indels: 11
0.91 0.01 0.08
Matches are distributed among these distances:
73 3 0.02
74 22 0.18
75 65 0.54
76 30 0.25
77 1 0.01
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (75 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGATGATTATTTTAAAATATGGATGATTTAT
TATGTAGTTG
Found at i:4925506 original size:36 final size:37
Alignment explanation
Indices: 4925465--4925586 Score: 126
Period size: 36 Copynumber: 3.3 Consensus size: 37
4925455 TGGATTGATT
4925465 TTTATT-GTATTGTATGGATTGATTTATTTTAAATAA
1 TTTATTAGTATTGTATGGATTGATTTATTTTAAATAA
* * * ** *
4925501 TTTATTAGTA-TGAAT-GATT-ATTTTAAATATGGATGA
1 TTTATTAGTATTGTATGGATTGA-TTT-ATTTTAAATAA
4925537 TTTATTATGTAGTTGTATGGATTGATTTATTTTAAATAA
1 TTTATTA-GTA-TTGTATGGATTGATTTATTTTAAATAA
4925576 TTTATTAGTAT
1 TTTATTAGTAT
4925587 GATGATTATT
Statistics
Matches: 66, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
34 1 0.02
35 7 0.11
36 23 0.35
37 7 0.11
38 3 0.05
39 17 0.26
40 7 0.11
41 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (37 bp):
TTTATTAGTATTGTATGGATTGATTTATTTTAAATAA
Found at i:4925619 original size:48 final size:53
Alignment explanation
Indices: 4925556--4925668 Score: 182
Period size: 48 Copynumber: 2.2 Consensus size: 53
4925546 TAGTTGTATG
*
4925556 GATTGATTTATTTTAAATAATTTATTAGTAT-GA-TGA-TTATTT-AAA-ATA
1 GATTAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTAAAATATA
4925604 GATTAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTAAAATATA
1 GATTAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTAAAATATA
4925657 GATTAATTTATT
1 GATTAATTTATT
4925669 ATTGTAGTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
48 30 0.51
49 2 0.03
50 3 0.05
51 6 0.10
52 3 0.05
53 15 0.25
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (53 bp):
GATTAATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTAAAATATA
Found at i:4925814 original size:31 final size:31
Alignment explanation
Indices: 4925777--4925835 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
4925767 AGTTGTATGG
* *
4925777 ATTATTTCAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATTTCAGTATTGCAAAACTAAA
4925808 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTGCAAAACT
4925836 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTGCAAAACTAAA
Found at i:4927717 original size:16 final size:16
Alignment explanation
Indices: 4927698--4927756 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
4927688 CCAACGTTTA
*
4927698 TGTTCGTTTATGGTCG
1 TGTTCGTTTATGTTCG
*
4927714 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
4927730 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
4927746 TGTTCGTTTAT
1 TGTTCGTTTAT
4927757 TTATTAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.08, C:0.12, G:0.24, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:4935895 original size:2 final size:2
Alignment explanation
Indices: 4935884--4935914 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4935874 ACTTAGATAA
4935884 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4935915 TGACATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:4937387 original size:3 final size:3
Alignment explanation
Indices: 4937379--4937441 Score: 69
Period size: 3 Copynumber: 21.7 Consensus size: 3
4937369 TAAAATTATT
* * *
4937379 TAA TAA TAA TAA TAA TAA T-A TAA TAA TTA TAA TTA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4937426 TAA -AA T-A TAAA TAA TA
1 TAA TAA TAA T-AA TAA TA
4937442 TTCAAATGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 6 0.12
3 42 0.84
4 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:4937396 original size:29 final size:30
Alignment explanation
Indices: 4937363--4937429 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 30
4937353 TGTAATAGTA
4937363 AATAAATAA-AATTAT-TTAATAATAATAAT
1 AATAAATAATAATTATATT-ATAATAATAAT
*
4937392 AATAATATAATAATTATAATTATAATTATAAT
1 AATAA-ATAATAATTAT-ATTATAATAATAAT
4937424 AATAAA
1 AATAAA
4937430 ATATAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 5 0.15
30 4 0.12
31 7 0.21
32 15 0.45
33 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
AATAAATAATAATTATATTATAATAATAAT
Found at i:4937432 original size:29 final size:28
Alignment explanation
Indices: 4937367--4937432 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
4937357 ATAGTAAATA
*
4937367 AATAAAATTATTTAATAATAATAATAAT
1 AATAAAATAATTTAATAATAATAATAAT
* * *
4937395 AATATAATAATTATAATTATAATTATAAT
1 AATAAAATAATT-TAATAATAATAATAAT
4937424 AATAAAATA
1 AATAAAATA
4937433 TAAATAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 10 0.31
29 22 0.69
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAAAATAATTTAATAATAATAATAAT
Found at i:4937439 original size:29 final size:31
Alignment explanation
Indices: 4937381--4937440 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
4937371 AAATTATTTA
*
4937381 ATAATAATAATAATAATATAATAATTATAATT
1 ATAATAATAATAATAAAATAATAA-TATAATT
*
4937413 ATAATTATAATAATAAAAT-ATAA-ATAAT
1 ATAATAATAATAATAAAATAATAATATAAT
4937441 ATTCAAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 5 0.19
31 4 0.15
32 17 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
ATAATAATAATAATAAAATAATAATATAATT
Done.