Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 37
Found at i:6745549 original size:48 final size:48
Alignment explanation
Indices: 6745429--6745541 Score: 154
Period size: 48 Copynumber: 2.4 Consensus size: 48
6745419 TCCTAAATAT
* *
6745429 TGGTGAGGGTAATGATAAGGGTGATTGTAATACTGAAATAACTGTTGC
1 TGGTGAGGGTAATGATAAGGGTGATTGTAATACTGAAATAACTATTAC
* * **
6745477 TGGTAAGGGTAATGATAAGGGTGATTGTACTACTGAAATGCCTATTAC
1 TGGTGAGGGTAATGATAAGGGTGATTGTAATACTGAAATAACTATTAC
* *
6745525 TGGTGAGGCTGATGATA
1 TGGTGAGGGTAATGATA
6745542 TGAGTGATAG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (48 bp):
TGGTGAGGGTAATGATAAGGGTGATTGTAATACTGAAATAACTATTAC
Found at i:6750870 original size:19 final size:20
Alignment explanation
Indices: 6750831--6750870 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6750821 TAACTGTTAA
*
6750831 TGAATTTTAAGATTTTATAT
1 TGAATTTTAAGATTATATAT
6750851 TGAATTTTAA-ATTATATAT
1 TGAATTTTAAGATTATATAT
6750870 T
1 T
6750871 CGATTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (20 bp):
TGAATTTTAAGATTATATAT
Found at i:6752545 original size:15 final size:15
Alignment explanation
Indices: 6752517--6752569 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 15
6752507 GATGGTGAAG
6752517 GAAGATGAAGAAAAA
1 GAAGATGAAGAAAAA
6752532 GAAGA-GAAGAAAAA
1 GAAGATGAAGAAAAA
* *
6752546 CAAGAAGAA-AAAGAA
1 GAAGATGAAGAAA-AA
6752561 GAAGGATGA
1 GAA-GATGA
6752570 GGTAGGCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
14 16 0.50
15 12 0.38
16 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.28, T:0.04
Consensus pattern (15 bp):
GAAGATGAAGAAAAA
Found at i:6752550 original size:9 final size:9
Alignment explanation
Indices: 6752523--6752563 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
6752513 GAAGGAAGAT
6752523 GAAGAAAAA
1 GAAGAAAAA
*
6752532 GAAG-AGAA
1 GAAGAAAAA
6752540 GAA-AAACAA
1 GAAGAAA-AA
6752549 GAAGAAAAA
1 GAAGAAAAA
6752558 GAAGAA
1 GAAGAA
6752564 GGATGAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
8 7 0.26
9 17 0.63
10 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.24, T:0.00
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:6754330 original size:19 final size:20
Alignment explanation
Indices: 6754291--6754330 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6754281 TAAGTGTTAA
*
6754291 TGAATTTTAAGATTTTATAT
1 TGAATTTTAAGATTATATAT
6754311 TGAATTTTAA-ATTATATAT
1 TGAATTTTAAGATTATATAT
6754330 T
1 T
6754331 CGATTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (20 bp):
TGAATTTTAAGATTATATAT
Found at i:6763288 original size:20 final size:20
Alignment explanation
Indices: 6763256--6763329 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
6763246 TTTTCCCAAT
*
6763256 TCGCAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
* ** *
6763276 TCGTAACGCGAATTGGGAAAA
1 TCGCAACGCGAA-TAAGTAAA
* *
6763297 TCACAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
6763317 TCGCAACGCGAAT
1 TCGCAACGCGAAT
6763330 TGGGAAAATC
Statistics
Matches: 40, Mismatches: 13, Indels: 2
0.73 0.24 0.04
Matches are distributed among these distances:
20 26 0.65
21 14 0.35
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAACGCGAATAAGTAAA
Found at i:6763304 original size:41 final size:41
Alignment explanation
Indices: 6763259--6763348 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
6763249 TCCCAATTCG
*
6763259 CAATGCGAATAAGTAAATCGTAACGCGAATTGGGAAAATCA
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
*
6763300 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCG
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
6763341 CAATGCGA
1 CAATGCGA
6763349 TACTGACTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (41 bp):
CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
Found at i:6763307 original size:21 final size:21
Alignment explanation
Indices: 6763256--6763348 Score: 82
Period size: 21 Copynumber: 4.5 Consensus size: 21
6763246 TTTTCCCAAT
** *
6763256 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTGGGAAAA
* *
6763276 TCGTAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTGGGAAAA
* ** *
6763297 TCACAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTGGGAAAA
*
6763317 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTGGGAAAA
6763338 TCGCAATGCGA
1 TCGCAATGCGA
6763349 TACTGACTAT
Statistics
Matches: 54, Mismatches: 17, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
20 25 0.46
21 29 0.54
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (21 bp):
TCGCAATGCGAATTGGGAAAA
Found at i:6763361 original size:41 final size:41
Alignment explanation
Indices: 6763275--6763409 Score: 114
Period size: 41 Copynumber: 3.3 Consensus size: 41
6763265 GAATAAGTAA
* * * *
6763275 ATCGTAACGCGAATTGGGAAAATCACAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
6763316 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
6763357 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
6763398 TTCGCAACGCGA
1 ATCGCAACGCGA
6763410 TACTGACTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
40 4 0.05
41 72 0.92
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:6763362 original size:20 final size:20
Alignment explanation
Indices: 6763337--6763471 Score: 128
Period size: 20 Copynumber: 6.7 Consensus size: 20
6763327 AATTGGGAAA
*
6763337 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
6763357 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* *
6763378 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
6763398 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
6763418 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * *
6763438 TTCGCAACGCGGTTCTGACT
1 ATCGCAACGCGATACTGACT
*
6763458 TTCGCAACGCGATA
1 ATCGCAACGCGATA
6763472 ATACATAATC
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.02
20 82 0.83
21 13 0.13
22 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:6763439 original size:40 final size:40
Alignment explanation
Indices: 6763338--6763471 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
6763328 ATTGGGAAAA
* * * * **
6763338 TCGCAATGCGATACTGACTATCGCAATGCGATAAT-ACAAAA
1 TCGCAACGCGATACTGACTTTCGCAACGCGATACTGAC--TT
* *
6763379 TCGCAACGAGATACTTACTTTCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTTTCGCAACGCGATACTGACTT
* * *
6763419 TCGCAACGCGATTCTGACTTTCGCAACGCGGTTCTGACTT
1 TCGCAACGCGATACTGACTTTCGCAACGCGATACTGACTT
6763459 TCGCAACGCGATA
1 TCGCAACGCGATA
6763472 ATACATAATC
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 47 0.60
41 29 0.37
42 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
TCGCAACGCGATACTGACTTTCGCAACGCGATACTGACTT
Found at i:6763687 original size:22 final size:22
Alignment explanation
Indices: 6763659--6763702 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6763649 CACTCTCTCA
6763659 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
6763681 CCCATCTCCGATGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
6763703 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.43, G:0.14, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:6763991 original size:20 final size:20
Alignment explanation
Indices: 6763966--6764004 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6763956 CGATTCTCTC
6763966 GTTGCGATAGTCATTTTCAT
1 GTTGCGATAGTCATTTTCAT
**
6763986 GTTGCGATTTTCATTTTCA
1 GTTGCGATAGTCATTTTCA
6764005 GAAACTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCAT
Found at i:6764194 original size:25 final size:24
Alignment explanation
Indices: 6764140--6764194 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
6764130 TGTTTATTAT
*
6764140 TGTTTTTGGTATATCTTCACAGTA
1 TGTTTTTGGTATATCTTAACAGTA
6764164 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
6764190 TGTTT
1 TGTTT
6764195 ATTGTTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:6765344 original size:18 final size:18
Alignment explanation
Indices: 6765323--6765367 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
6765313 TCCACTTCGG
*
6765323 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
6765341 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
6765359 GAGCCATCA
1 GAGCCATCA
6765368 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:6765880 original size:20 final size:20
Alignment explanation
Indices: 6765857--6765901 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
6765847 TTTCGCAACA
*
6765857 CGAAAATGACTATTGCAATG
1 CGAAAATGACTATCGCAATG
*
6765877 CGAAAATGGCTATCGCAATG
1 CGAAAATGACTATCGCAATG
6765897 CGAAA
1 CGAAA
6765902 TGAAAATCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (20 bp):
CGAAAATGACTATCGCAATG
Found at i:6765910 original size:19 final size:18
Alignment explanation
Indices: 6765888--6765983 Score: 66
Period size: 19 Copynumber: 5.6 Consensus size: 18
6765878 GAAAATGGCT
6765888 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
6765907 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
6765921 ATCGCAACGCGAAATG-AA
1 ATCGCAA-GCGAAATGAAA
*
6765939 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
*
6765953 ATCACAACGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
6765972 ATCGCAATGCGA
1 ATCGCAA-GCGA
6765984 TTTGTGTTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 22
0.67 0.08 0.25
Matches are distributed among these distances:
14 19 0.32
15 1 0.02
16 6 0.10
17 2 0.03
18 11 0.19
19 20 0.34
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:6765923 original size:14 final size:14
Alignment explanation
Indices: 6765904--6765961 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
6765894 ATGCGAAATG
6765904 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
6765918 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
6765934 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
6765950 AAAATCACAACG
1 AAAATCGCAACG
6765962 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:6765946 original size:32 final size:33
Alignment explanation
Indices: 6765888--6765978 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
6765878 GAAAATGGCT
*
6765888 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6765921 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
*
6765953 ATCACAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
6765979 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:6766014 original size:14 final size:14
Alignment explanation
Indices: 6765995--6766052 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6765985 TTGTGTTTCG
6765995 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
6766009 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
6766025 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
6766041 CGTTGCGATTTT
1 CGTTGCGATTTT
6766053 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:6766029 original size:32 final size:33
Alignment explanation
Indices: 6765990--6766068 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
6765980 GCGATTTGTG
6765990 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
6766022 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
6766055 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
6766069 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:6766087 original size:20 final size:19
Alignment explanation
Indices: 6766053--6766108 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
6766043 TTGCGATTTT
*
6766053 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
6766072 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
6766092 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
6766109 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:6767997 original size:14 final size:14
Alignment explanation
Indices: 6767978--6768013 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
6767968 ATTGTTTAAT
6767978 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
6767992 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
6768006 TGATTTGT
1 TGATTTGT
6768014 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:6768152 original size:19 final size:19
Alignment explanation
Indices: 6768130--6768217 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
6768120 ATCGCAACGA
6768130 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
*
6768149 GAAAATCGCAATGTGAAAT
1 GAAAATCGCAATGCGAAAT
6768168 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
6768187 GAAAATCGCAA--CGAAA-
1 GAAAATCGCAATGCGAAAT
6768203 -AAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
6768218 TTTTCATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
15 10 0.15
17 8 0.12
19 47 0.72
ACGTcount: A:0.49, C:0.16, G:0.20, T:0.15
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:6768181 original size:38 final size:35
Alignment explanation
Indices: 6768101--6768217 Score: 141
Period size: 38 Copynumber: 3.3 Consensus size: 35
6768091 AAAACAGACT
* ***
6768101 ATCGCAACGCGAAATGGCTATCGCAACG--AGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAGAAA
*
6768134 ATCGCAATGCGAAATGAAAATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA--CGAAA-GAAA
6768172 ATCGCAATGCGAAATGAAAATCGCAACGAAA-AAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAGAAA
6768206 ATCGCAATGCGA
1 ATCGCAATGCGA
6768218 TTTTCATTTC
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
33 22 0.30
34 15 0.21
35 1 0.01
36 4 0.05
37 1 0.01
38 30 0.41
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.15
Consensus pattern (35 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAAGAAA
Found at i:6768261 original size:20 final size:20
Alignment explanation
Indices: 6768236--6768273 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
6768226 TCGCATTGGG
6768236 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
6768256 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
6768274 TCAAATGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:6769357 original size:24 final size:24
Alignment explanation
Indices: 6769330--6769383 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
6769320 GTATTCGAAA
*
6769330 TTTGATCTTGGTCAATA-ACCGGAC
1 TTTGATATTGGTCAATATA-CGGAC
*
6769354 TTTGATATTGGTCAATATACGGAT
1 TTTGATATTGGTCAATATACGGAC
6769378 TTTGAT
1 TTTGAT
6769384 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATATACGGAC
Found at i:6771831 original size:19 final size:19
Alignment explanation
Indices: 6771809--6771867 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
6771799 GGAAATTACT
6771809 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6771828 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
6771842 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6771861 ATCGCAA
1 ATCGCAA
6771868 CGCTAATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 10 0.30
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.52
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:6771851 original size:33 final size:33
Alignment explanation
Indices: 6771809--6771935 Score: 175
Period size: 33 Copynumber: 3.8 Consensus size: 33
6771799 GGAAATTACT
6771809 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
6771842 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * * * *
6771874 TTTCGAAATGCGAAATAAAAATTGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
6771908 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
6771936 CGAATTTAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
32 1 0.01
33 77 0.97
34 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6771920 original size:66 final size:66
Alignment explanation
Indices: 6771814--6771942 Score: 222
Period size: 66 Copynumber: 2.0 Consensus size: 66
6771804 TTACTATCGC
* *
6771814 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAATTTCG
1 AATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTTCG
6771879 A
66 A
* *
6771880 AATGCGAAATAAAAATTGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTT
1 AATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTT
6771943 AATTTCGCGT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (66 bp):
AATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTTCG
A
Found at i:6772117 original size:14 final size:14
Alignment explanation
Indices: 6772098--6772134 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
6772088 CATCAATTAA
6772098 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
6772112 ACAAATCACCTTTT
1 ACAAATCAACTTTT
6772126 ACAAATCAA
1 ACAAATCAA
6772135 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:6773556 original size:21 final size:21
Alignment explanation
Indices: 6773490--6773556 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
6773480 GTGAATCGGG
*
6773490 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
6773510 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
6773532 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
6773553 CTCT
1 CTCT
6773557 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:6773575 original size:42 final size:42
Alignment explanation
Indices: 6773529--6773608 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
6773519 CGATGACAGT
* * *
6773529 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAAG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAAG
* * *
6773571 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
6773609 CAGGCGAGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.24, C:0.17, G:0.38, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAAG
Found at i:6775687 original size:14 final size:14
Alignment explanation
Indices: 6775668--6775700 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6775658 ATGACTATCG
6775668 CAACGAGAGAATCA
1 CAACGAGAGAATCA
*
6775682 CAACGAGAGAATCG
1 CAACGAGAGAATCA
6775696 CAACG
1 CAACG
6775701 CGAAATGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.24, T:0.06
Consensus pattern (14 bp):
CAACGAGAGAATCA
Found at i:6775715 original size:47 final size:48
Alignment explanation
Indices: 6775641--6775733 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 48
6775631 CGAGATAATT
* *
6775641 AGAATCGCAACGCGGAAATGACTATCGCAACGAGAGAATCACAACGAG
1 AGAATCGCAACGCGGAAATGACTATCGCAACAAGACAATCACAACGAG
* *
6775689 AGAATCGCAACGC-GAAATGACTATCGCGACAAGACAATCGCAACG
1 AGAATCGCAACGCGGAAATGACTATCGCAACAAGACAATCACAACG
6775734 CGAAATGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 28 0.68
48 13 0.32
ACGTcount: A:0.41, C:0.25, G:0.24, T:0.11
Consensus pattern (48 bp):
AGAATCGCAACGCGGAAATGACTATCGCAACAAGACAATCACAACGAG
Found at i:6775757 original size:20 final size:19
Alignment explanation
Indices: 6775724--6775794 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
6775714 GCGACAAGAC
6775724 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6775743 AATCGCAACCGCGAAATAAA
1 AATCGCAA-CGCGAAATGAA
6775763 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6775782 AATCGCAATGCGA
1 AATCGCAACGCGA
6775795 TTTTTGTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
19 30 0.62
20 18 0.38
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:6775826 original size:19 final size:19
Alignment explanation
Indices: 6775790--6775834 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
6775780 AAAATCGCAA
*
6775790 TGCGATTTTTGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
6775809 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
6775828 TGCGATT
1 TGCGATT
6775835 CTCTCGTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.07, C:0.16, G:0.24, T:0.53
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:6776452 original size:20 final size:20
Alignment explanation
Indices: 6776427--6776480 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
6776417 GATTTTGTAT
6776427 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
* * *
6776447 TATCGCGTTACGATAGTCAG
1 TATCGCATTGCGATAGTAAG
6776467 TATCGCATTGCGAT
1 TATCGCATTGCGAT
6776481 TTTCCCAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:6776493 original size:21 final size:20
Alignment explanation
Indices: 6776469--6776520 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
6776459 ATAGTCAGTA
*
6776469 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
6776490 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
6776510 TCGCATTGCGA
1 TCGCATTGCGA
6776521 ATTGGGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:6776499 original size:61 final size:61
Alignment explanation
Indices: 6776387--6776501 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
6776377 CGCTATGTAA
* * * ** *
6776387 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGT
1 ATCGCGTTACGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
* *
6776448 ATCGCGTTACGATAGTCAGTATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCGTTACGAAAGTCAGTATCGCATTGCGATTTT-CCAATATCGCATTGCGAT
6776502 TTACTTATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
61 43 0.96
62 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (61 bp):
ATCGCGTTACGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
Found at i:6776591 original size:21 final size:21
Alignment explanation
Indices: 6776551--6776591 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6776541 ACTGTATACA
**
6776551 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
6776572 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
6776592 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:6777227 original size:229 final size:228
Alignment explanation
Indices: 6776826--6777316 Score: 903
Period size: 229 Copynumber: 2.1 Consensus size: 228
6776816 GTTATATTGT
* *
6776826 AAAGTATATATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
*
6776891 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
6776956 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-A
6777021 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
6777055 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
6777120 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
* *
6777184 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAGCATGAAACACTATTA
130 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
6777249 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
*
6777283 AAAGTATATATCAATTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
6777317 GTATAAAAGT
Statistics
Matches: 255, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
228 68 0.27
229 113 0.44
230 74 0.29
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:6777763 original size:181 final size:182
Alignment explanation
Indices: 6777386--6777859 Score: 711
Period size: 181 Copynumber: 2.6 Consensus size: 182
6777376 CGATCCAAAT
* * * *
6777386 AAAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGT-TACAAAATGA
* * * * *
6777450 TAAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACT
65 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACT
* *
6777515 TCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTT
130 TCGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
* *
6777568 AAAAAATGTATCGATCCAAAACGATATACCAGGAAAAAATATGATAAAACCGGTTACAAAATGAT
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGAT
*
6777633 AAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
66 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* ** *
6777697 TGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTA
131 CGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
* *
6777749 AAAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGG-TATCAAAATGA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTA-CAAAATGA
* *
6777813 TAAAACCGGTAAAATGATACCTGATATATTGAAAGTGTCGATACTTT
65 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
6777860 CGTAAGTACG
Statistics
Matches: 266, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
180 2 0.01
181 167 0.63
182 97 0.36
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (182 bp):
AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGAT
AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
CGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
Found at i:6777803 original size:20 final size:19
Alignment explanation
Indices: 6777780--6777826 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
6777770 CGATATAACA
6777780 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
6777800 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
6777820 GGTAAAA
1 GGTAAAA
6777827 TGATACCTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:6777828 original size:17 final size:19
Alignment explanation
Indices: 6777789--6777831 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
6777779 AGGTAAAAAT
6777789 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
6777809 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
6777826 ATGATA
1 ATGATA
6777832 CCTGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:6779645 original size:149 final size:149
Alignment explanation
Indices: 6779388--6779689 Score: 577
Period size: 149 Copynumber: 2.0 Consensus size: 149
6779378 AAGTGCCCCA
*
6779388 TAGAATTGCACCGTAGTGCCATATAATGATGTACATAAGGACCACATAGAATTCTTTAAGAATCA
1 TAGAATTGCACCGTAGTGCCATATAATAATGTACATAAGGACCACATAGAATTCTTTAAGAATCA
*
6779453 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACATATGTTCCAAAGAATATACA
66 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
6779518 TATGTCCCGAAGAACCGCG
131 TATGTCCCGAAGAACCGCG
*
6779537 TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAATCA
1 TAGAATTGCACCGTAGTGCCATATAATAATGTACATAAGGACCACATAGAATTCTTTAAGAATCA
6779602 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
66 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
6779667 TATGTCCCGAAGAACCGCG
131 TATGTCCCGAAGAACCGCG
6779686 TAGA
1 TAGA
6779690 CCCTCGACTC
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (149 bp):
TAGAATTGCACCGTAGTGCCATATAATAATGTACATAAGGACCACATAGAATTCTTTAAGAATCA
TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
TATGTCCCGAAGAACCGCG
Found at i:6780217 original size:2 final size:2
Alignment explanation
Indices: 6780210--6780237 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6780200 CTTCTCTTAG
6780210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6780238 TCACATGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6780584 original size:18 final size:18
Alignment explanation
Indices: 6780563--6780597 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6780553 TCCCATCTAG
6780563 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
6780581 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
6780598 AATCTCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:6781208 original size:21 final size:21
Alignment explanation
Indices: 6781178--6781222 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6781168 ATTTTGTCGT
* *
6781178 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
6781199 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
6781220 TTG
1 TTG
6781223 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:6784518 original size:23 final size:23
Alignment explanation
Indices: 6784492--6784536 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
6784482 CACCACAGCT
*
6784492 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
6784515 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
6784537 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:6784774 original size:149 final size:149
Alignment explanation
Indices: 6784515--6784818 Score: 590
Period size: 149 Copynumber: 2.0 Consensus size: 149
6784505 CGAAGTGCCC
*
6784515 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
*
6784580 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCTAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
6784645 CATATGTCCCGAAGAACCG
131 CATATGTCCCGAAGAACCG
6784664 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
6784729 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
6784794 CATATGTCCCGAAGAACCG
131 CATATGTCCCGAAGAACCG
6784813 CGTAGA
1 CGTAGA
6784819 CCCTCGACTC
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCGAAGAACCG
Found at i:6785360 original size:2 final size:2
Alignment explanation
Indices: 6785353--6785416 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
6785343 CTTCTCTTAG
6785353 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6785395 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
6785417 CACATGTTCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6785762 original size:18 final size:18
Alignment explanation
Indices: 6785741--6785775 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6785731 TCCCATCTAG
6785741 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
6785759 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
6785776 AATCTCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:6786386 original size:21 final size:21
Alignment explanation
Indices: 6786356--6786400 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6786346 ATTTTGTCGT
* *
6786356 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
6786377 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
6786398 TTG
1 TTG
6786401 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:6788482 original size:21 final size:21
Alignment explanation
Indices: 6788458--6788501 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6788448 AAGACAATCA
6788458 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
6788479 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
6788500 AG
1 AG
6788502 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:6788577 original size:33 final size:33
Alignment explanation
Indices: 6788535--6788600 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
6788525 AAATAGATGG
*
6788535 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
6788568 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
6788601 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:6788839 original size:14 final size:13
Alignment explanation
Indices: 6788800--6788842 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
6788790 AGAAAAGAGG
6788800 GAGGAGGAAGAAA
1 GAGGAGGAAGAAA
*
6788813 AAGAGATGGAAGAAA
1 GAG-GA-GGAAGAAA
6788828 TGAGGAGGAAGAAA
1 -GAGGAGGAAGAAA
6788842 G
1 G
6788843 TCAATGTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 3 0.12
14 10 0.40
15 10 0.40
16 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (13 bp):
GAGGAGGAAGAAA
Found at i:6790416 original size:19 final size:19
Alignment explanation
Indices: 6790392--6790440 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
6790382 AATATAGGGT
6790392 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
6790411 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
6790430 TATTTTTGTAT
1 TAATTTTGTAT
6790441 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:6791249 original size:198 final size:198
Alignment explanation
Indices: 6790559--6791526 Score: 1814
Period size: 198 Copynumber: 4.9 Consensus size: 198
6790549 CAATATGGCC
*
6790559 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
*
6790624 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACTGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
6790689 GAATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
6790754 TGGAA
194 TGGAA
*
6790759 AATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
6790824 CAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
6790889 AATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTT--TCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
6790952 GGAA
195 GGAA
6790956 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
6791021 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
6791086 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
6791151 GAA
196 GAA
6791154 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
6791219 CAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
6791284 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
6791349 GAA
196 GAA
*
6791352 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
6791417 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
6791482 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
6791527 CTAATTTAAA
Statistics
Matches: 754, Mismatches: 12, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
196 23 0.03
197 171 0.23
198 383 0.51
199 117 0.16
200 60 0.08
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAA
Found at i:6793012 original size:12 final size:12
Alignment explanation
Indices: 6792995--6793087 Score: 60
Period size: 12 Copynumber: 7.2 Consensus size: 12
6792985 GGTCGCAGAA
*
6792995 GATGAAGCTGAT
1 GATGAAGATGAT
* *
6793007 GATGAAGACGAC
1 GATGAAGATGAT
* *
6793019 GATGATGATGAC
1 GATGAAGATGAT
*
6793031 GATGACGATGAAGCT
1 GATGAAGATG-A--T
6793046 GACGATGAAGATGAT
1 G---ATGAAGATGAT
* *
6793061 GACGATGATGAT
1 GATGAAGATGAT
6793073 GATGAAGATGAT
1 GATGAAGATGAT
6793085 GAT
1 GAT
6793088 CCAAACAAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
12 50 0.79
13 1 0.02
15 3 0.05
17 1 0.02
18 8 0.13
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.22
Consensus pattern (12 bp):
GATGAAGATGAT
Found at i:6793013 original size:18 final size:18
Alignment explanation
Indices: 6792992--6793087 Score: 59
Period size: 18 Copynumber: 5.0 Consensus size: 18
6792982 AGCGGTCGCA
6792992 GAAGATGAAGCTGATGAT
1 GAAGATGAAGCTGATGAT
* *
6793010 GAAGACGACGATGATGATGACGAT
1 GAAGATGA--A-GCTGAT---GAT
* *
6793034 GACGATGAAGCTGACGAT
1 GAAGATGAAGCTGATGAT
*
6793052 GAAGATGATGAC-GATGAT
1 GAAGATGAAG-CTGATGAT
* *
6793070 GATGATGAAGATGATGAT
1 GAAGATGAAGCTGATGAT
6793088 CCAAACAAGT
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
18 37 0.64
19 1 0.02
20 1 0.02
21 9 0.16
22 1 0.02
24 9 0.16
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGCTGATGAT
Found at i:6793024 original size:15 final size:15
Alignment explanation
Indices: 6793004--6793087 Score: 80
Period size: 15 Copynumber: 5.6 Consensus size: 15
6792994 AGATGAAGCT
*
6793004 GATGATGAAGACGAC
1 GATGATGATGACGAC
*
6793019 GATGATGATGACGAT
1 GATGATGATGACGAC
* *
6793034 GACGATGAAG-CTGAC
1 GATGATGATGAC-GAC
* *
6793049 GATGAAGATGATGAC
1 GATGATGATGACGAC
* *
6793064 GATGATGATGATGAA
1 GATGATGATGACGAC
6793079 GATGATGAT
1 GATGATGAT
6793088 CCAAACAAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 1 0.02
15 55 0.98
ACGTcount: A:0.37, C:0.08, G:0.33, T:0.21
Consensus pattern (15 bp):
GATGATGATGACGAC
Found at i:6793034 original size:6 final size:6
Alignment explanation
Indices: 6793016--6793083 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
6793006 TGATGAAGAC
* * * * * *
6793016 GACGAT GATGAT GACGAT GACGAT GAAGCT GACGAT GAAGAT GATGAC
1 GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT GACGAT
* * *
6793064 GATGAT GATGAT GAAGAT GA
1 GACGAT GACGAT GACGAT GA
6793084 TGATCCAAAC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.37, C:0.09, G:0.34, T:0.21
Consensus pattern (6 bp):
GACGAT
Found at i:6794313 original size:16 final size:16
Alignment explanation
Indices: 6794281--6794314 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6794271 TATCCACAAC
* *
6794281 AAAGTGTCGATTTAAA
1 AAAGTGTCGACTGAAA
6794297 AAAGTGTCGACTGAAA
1 AAAGTGTCGACTGAAA
6794313 AA
1 AA
6794315 TGTAATAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (16 bp):
AAAGTGTCGACTGAAA
Found at i:6794707 original size:23 final size:23
Alignment explanation
Indices: 6794676--6794748 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
6794666 ATAGGTAAAA
*
6794676 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6794699 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6794722 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6794745 ATAT
1 ATAT
6794749 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6794773 original size:46 final size:45
Alignment explanation
Indices: 6794676--6794773 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 45
6794666 ATAGGTAAAA
* * *
6794676 ATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATATCTATCCTTT
* *
6794722 ATATAATGTAATAGGTAGTGGTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TATCTATCCTTT
*
6794768 TTATAA
1 ATATAA
6794774 AAGTGTCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.05
46 39 0.89
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATATCTATCCTTT
Found at i:6795404 original size:183 final size:182
Alignment explanation
Indices: 6795129--6795621 Score: 878
Period size: 183 Copynumber: 2.7 Consensus size: 182
6795119 GCAATGCTAT
6795129 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
6795194 ATGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTCAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTGTCGACA
*
6795259 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTATAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
6795312 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
6795377 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGATA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTGTCGACA
* *
6795442 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
* * *
6795495 CGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
6795560 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGTGTCG
6795622 GTAATTTTAA
Statistics
Matches: 299, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
183 295 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTGTCGACAT
TTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
Found at i:6798112 original size:25 final size:25
Alignment explanation
Indices: 6798084--6798148 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
6798074 TTATCATTAA
6798084 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
6798109 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
* *
6798134 ATTTATGTATATACA
1 ATTTAGGTATGTACA
6798149 TCTTTTGAGT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.43
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:6798520 original size:23 final size:23
Alignment explanation
Indices: 6798489--6798561 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6798479 ATAGGTAAAA
*
6798489 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6798512 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6798535 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6798558 ATAT
1 ATAT
6798562 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6798873 original size:25 final size:25
Alignment explanation
Indices: 6798835--6798884 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
6798825 AAATCAATTA
*
6798835 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
6798860 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
6798885 GAAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:6799292 original size:18 final size:18
Alignment explanation
Indices: 6799271--6799307 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6799261 GTAATTGGAG
6799271 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
6799289 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
6799307 T
1 T
6799308 ATATATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:6799315 original size:24 final size:24
Alignment explanation
Indices: 6799263--6799309 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6799253 TTTCATATGT
* *
6799263 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
6799287 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
6799310 ATATTTTGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:6799665 original size:39 final size:39
Alignment explanation
Indices: 6799578--6799668 Score: 155
Period size: 39 Copynumber: 2.3 Consensus size: 39
6799568 TCCGATGCTC
* *
6799578 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCTAAAGCTCATATGATGCCAAGCAAAAGGAA
*
6799617 ATCAAAATCTAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCTAAAGCTCATATGATGCCAAGCAAAAGGAA
6799656 ATCAAAATCTAAA
1 ATCAAAATCTAAA
6799669 ACTTGAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.49, C:0.19, G:0.13, T:0.19
Consensus pattern (39 bp):
ATCAAAATCTAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:6800116 original size:23 final size:23
Alignment explanation
Indices: 6800085--6800157 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
6800075 ATAGGTAAAA
*
6800085 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6800108 ATATAATGTAATAGATATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6800131 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6800154 ATAT
1 ATAT
6800158 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6800547 original size:23 final size:23
Alignment explanation
Indices: 6800516--6800588 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
6800506 ATAGGTAAAA
*
6800516 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6800539 ATATAATGTAATAAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
6800562 ATAAAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6800585 ATAT
1 ATAT
6800589 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6800979 original size:23 final size:23
Alignment explanation
Indices: 6800948--6801020 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
6800938 ATAGGTAAAA
*
6800948 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
6800971 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
6800994 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
6801017 ATAT
1 ATAT
6801021 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6801404 original size:23 final size:23
Alignment explanation
Indices: 6801378--6801450 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
6801368 ATAGGTAAAA
* *
6801378 ATATGATGTAATAAGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
6801401 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
6801424 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
6801447 ATAT
1 ATAT
6801451 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6801524 original size:430 final size:431
Alignment explanation
Indices: 6799883--6801801 Score: 3583
Period size: 430 Copynumber: 4.5 Consensus size: 431
6799873 GTTAATGTTG
* *
6799883 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
* *
6799947 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATTGTT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
6800011 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
* *
6800076 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGATATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
* *
6800141 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTCTTCACTG
261 ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
* * *
6800206 TGGAAAACATTAATTTAATGTTATCATTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATATG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
6800271 CGTCTAATGATTTATTTTTTACATTACGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
6800312 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6800377 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
6800442 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
* * *
6800507 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATAAAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
* *
6800572 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACATTTTTCACTG
261 ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
6800637 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
6800702 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
6800743 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6800808 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAAATTGAAACA
6800873 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
130 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
6800938 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGT
*
6801003 AATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACT
260 AATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
6801068 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
6801133 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
6801175 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6801240 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
6801304 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
6801369 TAGGTAAAAATATGATGTAATAAGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
*
6801434 ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTG
261 ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
6801499 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
6801564 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
6801605 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6801670 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
* *
6801735 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
6801800 TA
196 TA
6801802 TAATGTAATA
Statistics
Matches: 1461, Mismatches: 25, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
429 7 0.00
430 528 0.36
431 501 0.34
432 425 0.29
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.39
Consensus pattern (431 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTA
ATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:6802016 original size:862 final size:855
Alignment explanation
Indices: 6799883--6801801 Score: 3062
Period size: 862 Copynumber: 2.2 Consensus size: 855
6799873 GTTAATGTTG
* *
6799883 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
* *
6799947 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATTGTT--AAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
*
6800010 TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATA
131 TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATA
* * * * * *
6800075 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGATATCGTTTATATAATGT
196 ATAGGTAAAAATATGATGTAATAGCTAGCGCGTATATAATATAATAGGTAGCG-TTATAAAATGT
* * * * **
6800140 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACT-T-TCTTCA
260 AATA-GTAGCGCTTATATTATAAAGTAGCTATCCTTAGTATAAAAGTGTCCATA-TATAT-TTCA
** * * **
6800203 CTGTGGAAAACATTAATTTAATGTTATCATTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
322 CTGTGGAAAACATTAACATAACG-TATC--TTGA--GAATTTTAAGATATTAATTTAG-AACGAT
* ***
6800268 ATG-CGTCTAATGATTTATTTTTTACATTACGATATATATTATTATTAAATTAAAAATTCTAAAT
381 A-GCCGTATAATGAACCATTTTTTACATTACGATATATATTATTATTAAATTAAAAATTCTAAAT
6800332 AATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
445 AATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
6800397 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
510 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
6800462 AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
575 AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
* * *
6800527 TAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATAAAATGTAATAGGTAGTGGTTATATTGT
640 TAAGTAGCGCTTATATAATGTAATAAGTAGCGTTTATAAAATGTAATAGGTAGTGCTTATATTGT
6800592 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTAATTTAAGG
705 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTAATTTAAGG
*
6800657 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTT
770 TTATCTTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTT
6800722 ACGTTACGATATATATTATTA
835 ACGTTACGATATATATTATTA
6800743 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6800808 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
* *
6800873 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
131 TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATA
* * * *
6800938 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGT
196 ATAGGTAAAAATATGATGTAATAGCTAGCGCGTATATAATATAATAGGTAGCG-TTATAAAATGT
* * * ** * *
6801003 AATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACT
260 AATA-GTAGCGCTTATATTATAAAGTAGCTATCCTTAGTATAAAAGTGTCCATATATATTTCACT
** * * **
6801068 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
324 GTGGAAAACATTAACATAACG-TATC--TTGA--GAATTTTAAGATATTAATTTAG-AACGATAG
* * *** *
6801133 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAAT
383 CCGTATAATGAACCATTTTTTACATTACGATATATATTATTATTAAATTAAAAATTCTAAATAAT
6801198 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
448 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
6801263 TAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAG
513 TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAG
6801327 TATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAA
578 TATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAA
* *
6801392 GTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAA
643 GTAGCGCTTATATAATGTAATAAGTAGCGTTTATAAAATGTAATAGGTAGTGCTTATATTGTAAA
**
6801457 GTATCTATCCTTTTTATAAAAGTGTCCATATTTTTTTCACTGTGGAAAACATTAATTTAAGGTTA
708 GTATCTATCCTTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTAATTTAAGGTTA
6801522 TCTTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
773 TCTTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACG
6801587 TTACGATATATATTATTA
838 TTACGATATATATTATTA
*
6801605 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
6801670 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
6801734 TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATA
131 TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATA
6801799 ATA
196 ATA
6801802 TAATGTAATA
Statistics
Matches: 1031, Mismatches: 22, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
860 7 0.01
861 183 0.18
862 423 0.41
863 417 0.40
864 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.39
Consensus pattern (855 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAAATTGAAACA
TAAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATA
ATAGGTAAAAATATGATGTAATAGCTAGCGCGTATATAATATAATAGGTAGCGTTATAAAATGTA
ATAGTAGCGCTTATATTATAAAGTAGCTATCCTTAGTATAAAAGTGTCCATATATATTTCACTGT
GGAAAACATTAACATAACGTATCTTGAGAATTTTAAGATATTAATTTAGAACGATAGCCGTATAA
TGAACCATTTTTTACATTACGATATATATTATTATTAAATTAAAAATTCTAAATAATATTTTATA
AAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGA
AAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATC
CTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAAGTAGCGCT
TATATAATGTAATAAGTAGCGTTTATAAAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTAT
CCTTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGA
GTGAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATA
TATATTATTA
Found at i:6807288 original size:26 final size:26
Alignment explanation
Indices: 6807252--6807308 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
6807242 TCTCACACCC
*
6807252 TAGACTAAGATTATCTATTATTTTGA
1 TAGAGTAAGATTATCTATTATTTTGA
6807278 TAGAGTAAGATTATCTATTATTTTGA
1 TAGAGTAAGATTATCTATTATTTTGA
6807304 TAGAG
1 TAGAG
6807309 AGAAAGAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (26 bp):
TAGAGTAAGATTATCTATTATTTTGA
Found at i:6812547 original size:6 final size:6
Alignment explanation
Indices: 6812536--6812568 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
6812526 TTTGCATTAG
6812536 AAATTC AAATTC AAATTC AAATTC AAATTC AAA
1 AAATTC AAATTC AAATTC AAATTC AAATTC AAA
6812569 CTTTGATTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTC
Found at i:6818382 original size:4 final size:4
Alignment explanation
Indices: 6818373--6818399 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6818363 TTCAACTCCT
6818373 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
6818400 TTAGGTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6822179 original size:16 final size:16
Alignment explanation
Indices: 6822151--6822189 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6822141 TTGGTTCTCT
*
6822151 TTTTAT-AATTATTAA
1 TTTTATAAAATATTAA
6822166 TTTTATAAAATATTAA
1 TTTTATAAAATATTAA
*
6822182 ATTTATAA
1 TTTTATAA
6822190 CAAAAGCAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTTATAAAATATTAA
Found at i:6833859 original size:149 final size:142
Alignment explanation
Indices: 6833342--6833967 Score: 843
Period size: 140 Copynumber: 4.4 Consensus size: 142
6833332 TCGGGATGAA
*
6833342 ATAAAAGAAATCGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATT-A
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTAA
*
6833406 TTATTT-TT-AAATAAACAAATAGTATTTAATTA-CTATCTCAAAAATGTCAAAAAAATATTAAA
66 TT-TTTATTAAAATAAACAAATAGTAATTAATTATC-ATCTCAAAAATGTCAAAAAAATATTAAA
6833468 GCACACAAAAATAT
129 GCACACAAAAATAT
* *
6833482 ATAAAAGAAATGGACTCCTAATTTTAAAAAATTATAAAAAATATATAGTGTAAAATTGATATTAA
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTAA
* * *
6833547 TTTTTTTTATTAAAATAAACAAATAATAATTAATTATCATCTCAAAAATATCAAAAAGAAAAAAA
66 ---TTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAAATGTC----A-AAAAAAT
6833612 ATTTAAAGCACACAAAAATAT
123 A-TTAAAGCACACAAAAATAT
* ** *
6833633 ATAAAAGAAATGGGCATCTACTTTT-AAAAA--AT------TATATAGTATAAAATTGATATTAA
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTAA
6833689 TTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAAAATGTCAAAAAAATATATATT
66 TTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTC-AAAAATGTC--AAAAA-A-ATATT
6833754 AAAGCACACAAAAATAT
126 AAAGCACACAAAAATAT
* *
6833771 ATAAATGAAAT-GAGTCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTA
1 ATAAAAGAAATGGA-CCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTA
6833835 ATTTTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAAATGTCAAAAAAATATTAA
65 A--TTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAAATGTCAAAAAAATATTAA
*
6833900 AGCACATAAAAATAT
128 AGCACACAAAAATAT
6833915 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTAT-AAAAA-ATATAGTATAAAA
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAA
6833968 CTTTTACGGG
Statistics
Matches: 433, Mismatches: 24, Indels: 56
0.84 0.05 0.11
Matches are distributed among these distances:
137 5 0.01
138 40 0.09
139 46 0.11
140 68 0.16
141 3 0.01
142 36 0.08
143 8 0.02
144 55 0.13
145 38 0.09
146 6 0.01
147 24 0.06
148 11 0.03
149 41 0.09
150 12 0.03
151 40 0.09
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (142 bp):
ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTAA
TTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAAATGTCAAAAAAATATTAAAGC
ACACAAAAATAT
Found at i:6833961 original size:289 final size:286
Alignment explanation
Indices: 6833342--6833967 Score: 902
Period size: 289 Copynumber: 2.2 Consensus size: 286
6833332 TCGGGATGAA
*
6833342 ATAAAAGAAATCGACCCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATTGATATTAT
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTAT-AAAAA-ATATAGTATAAAATTGATATTAT
*
6833407 TATTTTTAAATAAACAAATAGTATTTAATTACTATCTCAAAAATGTCAAAAAAATATTAAAGCAC
64 TATTTTTAAATAAACAAATAGTAATTAATTACTATCTCAAAAATGTCAAAAAAATATTAAAGCAC
*
6833472 ACAAAAATATATAAAAGAAATGGACTCCTAATTTTAAAAAATTATAAAAAATATATAGTGTAAAA
129 ACAAAAATATATAAAAGAAATGGACTCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAA
6833537 TTGATATTAATTTTTTTTATTAAAATAAACAAATAATAATTAATTATCATCTCAAAAATATCAAA
194 TTGATATTAATTTTTTTTATTAAAATAAACAAATAATAATTAATTATCATCTCAAAAATATC---
6833602 AAGAAAAAAAATTTAAAGCACACAAAAATAT
256 AAGAAAAAAAATTTAAAGCACACAAAAATAT
* ** *
6833633 ATAAAAGAAATGGGCATCTACTTTTAAAAAA-T-T-----ATATAGTATAAAATTGATATTAATT
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATAGTATAAAATTGATATT-ATT
6833691 -TTTATTAAAATAAACAAATAGTAATTAATTA-TCATCTCAAAAAATGTCAAAAAAATATATATT
65 ATTT-TT-AAATAAACAAATAGTAATTAATTACT-ATCTC-AAAAATGTC--AAAAA-A-ATATT
* *
6833754 AAAGCACACAAAAATATATAAATGAAAT-GAGTCCCTAATTTTAAAAAATTATAAAAAATATATA
122 AAAGCACACAAAAATATATAAAAGAAATGGACT-CCTAATTTTAAAAAATTATAAAAAATATATA
*
6833818 GTATAAAATTGATATTAA-TTTTTTTATTAAAATAAACAAATAGTAATTAATTATCATCTCAAAA
186 GTATAAAATTGATATTAATTTTTTTTATTAAAATAAACAAATAATAATTAATTATCATCTCAAAA
* * *
6833882 ATGTC-A-AAAAAATA-TTAAAGCACATAAAAATAT
251 ATATCAAGAAAAAAAATTTAAAGCACACAAAAATAT
6833915 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATAGTATAAAA
1 ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATAGTATAAAA
6833968 CTTTTACGGG
Statistics
Matches: 301, Mismatches: 17, Indels: 36
0.85 0.05 0.10
Matches are distributed among these distances:
282 69 0.23
283 14 0.05
284 30 0.10
285 9 0.03
287 5 0.02
288 53 0.18
289 94 0.31
290 1 0.00
291 26 0.09
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (286 bp):
ATAAAAGAAATGGACCCCTAATTTTAAAAAATTATAAAAAATATAGTATAAAATTGATATTATTA
TTTTTAAATAAACAAATAGTAATTAATTACTATCTCAAAAATGTCAAAAAAATATTAAAGCACAC
AAAAATATATAAAAGAAATGGACTCCTAATTTTAAAAAATTATAAAAAATATATAGTATAAAATT
GATATTAATTTTTTTTATTAAAATAAACAAATAATAATTAATTATCATCTCAAAAATATCAAGAA
AAAAAATTTAAAGCACACAAAAATAT
Found at i:6837121 original size:64 final size:64
Alignment explanation
Indices: 6837016--6837177 Score: 172
Period size: 63 Copynumber: 2.5 Consensus size: 64
6837006 ATTGTTCAAG
* * ** *
6837016 GTGTATCGATGCACATGAAGTGCATCGATGCACTAATTTAAAATAAAAACATCGAAT-GTCA-TC
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCACTT-AAATAAAAACATCGAATAG-CATTC
6837079 A
64 A
* * * *
6837080 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAATACAAACATCGAATAGGATTTA
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCACTTAAATAAAAACATCGAATAGCATTCA
6837144 -TGTATCGAT--ACATAGATAGTGCATCGATGCACCC
1 GTGTATCGATGCACA-AG-TAGTGCATCGATGCACCC
6837178 GTCAAGGGAT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
61 3 0.04
62 2 0.02
63 44 0.52
64 36 0.42
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (64 bp):
GTGTATCGATGCACAAGTAGTGCATCGATGCACCCACTTAAATAAAAACATCGAATAGCATTCA
Found at i:6837855 original size:23 final size:23
Alignment explanation
Indices: 6837824--6837881 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
6837814 TGTTATATGA
*
6837824 CACTACGGTGCAATTCTACGCGG
1 CACTTCGGTGCAATTCTACGCGG
* *
6837847 CATTTCGGTGCAATTCTACGTGG
1 CACTTCGGTGCAATTCTACGCGG
*
6837870 CGCTTCGGTGCA
1 CACTTCGGTGCA
6837882 TTTATACGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (23 bp):
CACTTCGGTGCAATTCTACGCGG
Found at i:6844767 original size:23 final size:23
Alignment explanation
Indices: 6844741--6844800 Score: 86
Period size: 23 Copynumber: 2.6 Consensus size: 23
6844731 AATCTTATAT
6844741 GGCACTAT-GGTGCAATTCTACGC
1 GGCACT-TCGGTGCAATTCTACGC
*
6844764 GGCACTTCGGTGCAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
*
6844787 GGCATTTCGGTGCA
1 GGCACTTCGGTGCA
6844801 TTTATACAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 1 0.03
23 33 0.97
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.28
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:6849747 original size:29 final size:29
Alignment explanation
Indices: 6849705--6849790 Score: 163
Period size: 29 Copynumber: 3.0 Consensus size: 29
6849695 AGTGTTGGCC
*
6849705 GTAGGTCGCCATGCACTCCGGGCGATCTT
1 GTAGGTCGCCATGCACTCCGGGCGACCTT
6849734 GTAGGTCGCCATGCACTCCGGGCGACCTT
1 GTAGGTCGCCATGCACTCCGGGCGACCTT
6849763 GTAGGTCGCCATGCACTCCGGGCGACCT
1 GTAGGTCGCCATGCACTCCGGGCGACCT
6849791 ACCCTTGCTC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.21
Consensus pattern (29 bp):
GTAGGTCGCCATGCACTCCGGGCGACCTT
Found at i:6849904 original size:29 final size:29
Alignment explanation
Indices: 6849870--6849925 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
6849860 TCCCAACACA
6849870 TAGGTCGACATGCCCTCCGGGCGACCTTG
1 TAGGTCGACATGCCCTCCGGGCGACCTTG
*
6849899 TAGGTCGCCATGCCCTCCGGGCGACCT
1 TAGGTCGACATGCCCTCCGGGCGACCT
6849926 ACCCTCGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (29 bp):
TAGGTCGACATGCCCTCCGGGCGACCTTG
Found at i:6849966 original size:33 final size:33
Alignment explanation
Indices: 6849929--6850013 Score: 118
Period size: 33 Copynumber: 2.6 Consensus size: 33
6849919 GCGACCTACC
*
6849929 CTCGCTCGGCTT-CCCTCGGATTCCCTCGCATAG
1 CTCGCTCGG-TTGCCCTCGGATGCCCTCGCATAG
6849962 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
1 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
* * *
6849995 CTCGTTCGGATGGCCTCGG
1 CTCGCTCGGTTGCCCTCGG
6850014 TCGGATGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
32 2 0.04
33 45 0.96
ACGTcount: A:0.08, C:0.39, G:0.27, T:0.26
Consensus pattern (33 bp):
CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
Found at i:6850017 original size:14 final size:14
Alignment explanation
Indices: 6849995--6850027 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6849985 CCTCGCATAG
*
6849995 CTCGTTCGGATGGC
1 CTCGGTCGGATGGC
6850009 CTCGGTCGGATGGC
1 CTCGGTCGGATGGC
6850023 CTCGG
1 CTCGG
6850028 ATGCCCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.30, G:0.39, T:0.24
Consensus pattern (14 bp):
CTCGGTCGGATGGC
Found at i:6850107 original size:29 final size:29
Alignment explanation
Indices: 6850070--6850127 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
6850060 GCAATCTCTT
*
6850070 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
* *
6850099 GTAGGTCGCCCGGAAGGCATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
6850128 CGGCCAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGGCGACCTA
Found at i:6850849 original size:35 final size:37
Alignment explanation
Indices: 6850741--6850874 Score: 220
Period size: 36 Copynumber: 3.7 Consensus size: 37
6850731 TTTTTATTTT
*
6850741 TAATATATAATTTTGAAAACATTTTTGAAAACATATA
1 TAATATATAGTTTTGAAAACATTTTTGAAAACATATA
* *
6850778 TACTATATAGTTTT-AAAACATTTTTTAAAACATATA
1 TAATATATAGTTTTGAAAACATTTTTGAAAACATATA
6850814 TAATATATAGTTTT-AAAACATTTTTGAAAAC-TATA
1 TAATATATAGTTTTGAAAACATTTTTGAAAACATATA
6850849 TAATATATAGTTTTGAAAACATTTTT
1 TAATATATAGTTTTGAAAACATTTTT
6850875 TTCCGACTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
35 18 0.20
36 61 0.67
37 12 0.13
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (37 bp):
TAATATATAGTTTTGAAAACATTTTTGAAAACATATA
Found at i:6851730 original size:12 final size:12
Alignment explanation
Indices: 6851713--6851739 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6851703 CAAAACAATT
6851713 AAATTATTTAAC
1 AAATTATTTAAC
6851725 AAATTATTTAAC
1 AAATTATTTAAC
6851737 AAA
1 AAA
6851740 GATCAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATTATTTAAC
Found at i:6852038 original size:20 final size:20
Alignment explanation
Indices: 6852013--6852052 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6852003 ATTTGACTAT
6852013 GCGAATATGTAAATCGCAAC
1 GCGAATATGTAAATCGCAAC
*
6852033 GCGAATATGTAGATCGCAAC
1 GCGAATATGTAAATCGCAAC
6852053 ACATAAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (20 bp):
GCGAATATGTAAATCGCAAC
Found at i:6852149 original size:20 final size:19
Alignment explanation
Indices: 6852126--6852194 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
6852116 ATTTTCTAAA
6852126 TCGCAACACGAATTTTATTT
1 TCGCAACACGAATTTTA-TT
* * *
6852146 TCGCAACTC-TATTTTCGAAT
1 TCGCAACACGAATTTT--ATT
6852166 TCGCAACACGAATTTTAATT
1 TCGCAACACGAATTTT-ATT
6852186 TCGCAACAC
1 TCGCAACAC
6852195 AAATGTTTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 5 0.13
20 28 0.72
21 6 0.15
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (19 bp):
TCGCAACACGAATTTTATT
Found at i:6852160 original size:40 final size:40
Alignment explanation
Indices: 6852116--6852192 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
6852106 TCGCAACAAG
* *
6852116 ATTTTCTAAATCGCAACACGAATTTTATTTTCGCAACTCT
1 ATTTTCGAAATCGCAACACGAATTTTAATTTCGCAACTCT
*
6852156 ATTTTCGAATTCGCAACACGAATTTTAATTTCGCAAC
1 ATTTTCGAAATCGCAACACGAATTTTAATTTCGCAAC
6852193 ACAAATGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (40 bp):
ATTTTCGAAATCGCAACACGAATTTTAATTTCGCAACTCT
Found at i:6852367 original size:16 final size:15
Alignment explanation
Indices: 6852332--6852370 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
6852322 TCCCCATCTC
*
6852332 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
6852347 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
6852363 TAATTTTT
1 TAATTTTT
6852371 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:6852982 original size:12 final size:12
Alignment explanation
Indices: 6852961--6852994 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6852951 ACCACATTTC
*
6852961 CAATACCAAACA
1 CAATATCAAACA
6852973 CAATATCAAACA
1 CAATATCAAACA
*
6852985 CAATCTCAAA
1 CAATATCAAA
6852995 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:6854177 original size:18 final size:18
Alignment explanation
Indices: 6854154--6854189 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6854144 AAGCAAAAAG
*
6854154 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
6854172 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
6854190 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:6854789 original size:31 final size:31
Alignment explanation
Indices: 6854753--6854816 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
6854743 GTACTTAACC
6854753 AAACATTTTCAAACCAACAAGTATATATGTT
1 AAACATTTTCAAACCAACAAGTATATATGTT
6854784 AAACATTTTCAAACCAACAAGTATATATGTT
1 AAACATTTTCAAACCAACAAGTATATATGTT
6854815 AA
1 AA
6854817 CAACACTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.31
Consensus pattern (31 bp):
AAACATTTTCAAACCAACAAGTATATATGTT
Found at i:6855992 original size:21 final size:21
Alignment explanation
Indices: 6855966--6856063 Score: 128
Period size: 21 Copynumber: 4.7 Consensus size: 21
6855956 GTGAATCGGG
* *
6855966 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGATGAGAGAGGC
*
6855987 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGATGAGAGAGGC
6856008 CTCTTGAACGATGAGATGA-GC
1 CTCTTGAACGATGAGA-GAGGC
*
6856029 CTCTTGAACGAT-AGGAGGGGC
1 CTCTTGAACGATGA-GAGAGGC
6856050 CTCTTGAACGATGA
1 CTCTTGAACGATGA
6856064 CAGATGAATC
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.03
21 64 0.94
22 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.21
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGAGGC
Found at i:6856031 original size:42 final size:42
Alignment explanation
Indices: 6855966--6856063 Score: 146
Period size: 42 Copynumber: 2.3 Consensus size: 42
6855956 GTGAATCGGG
* *
6855966 CTCTTGAACGGTGGGAGAGGCCTCTTGAACGAT-GAGAGGGGC
1 CTCTTGAACGATGAGAGAGGCCTCTTGAACGATAG-GAGGGGC
6856008 CTCTTGAACGATGAGATGA-GCCTCTTGAACGATAGGAGGGGC
1 CTCTTGAACGATGAGA-GAGGCCTCTTGAACGATAGGAGGGGC
6856050 CTCTTGAACGATGA
1 CTCTTGAACGATGA
6856064 CAGATGAATC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
42 49 0.94
43 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGATGAGAGAGGCCTCTTGAACGATAGGAGGGGC
Found at i:6856486 original size:63 final size:63
Alignment explanation
Indices: 6856393--6856513 Score: 138
Period size: 63 Copynumber: 1.9 Consensus size: 63
6856383 TTACGTAAAG
** * *
6856393 CACCATTGTCATCGTGTAAAATATCTACCTCACCACGTAAAG-ACCGTACCTCATCACGCCATA
1 CACCATTGTCATCACGTAAAATATCTACCTCACAACATAAAGTACCG-ACCTCATCACGCCATA
* * * *
6856456 CACCATTGTCGTCACGTAAAGTA-CTGACCTCATAACATAAAGTACTGACCTCATCACG
1 CACCATTGTCATCACGTAAAATATCT-ACCTCACAACATAAAGTACCGACCTCATCACG
6856514 TAACTCCCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
62 2 0.04
63 43 0.90
64 3 0.06
ACGTcount: A:0.32, C:0.31, G:0.12, T:0.24
Consensus pattern (63 bp):
CACCATTGTCATCACGTAAAATATCTACCTCACAACATAAAGTACCGACCTCATCACGCCATA
Found at i:6858245 original size:20 final size:19
Alignment explanation
Indices: 6858207--6858261 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
6858197 AAATCGCAAC
*
6858207 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCACGTT
*
6858226 GCGATTTTCATTTTCACGTT
1 GCGATTTT-AGTTTCACGTT
*
6858246 GCGAATTTAAGTTTCA
1 GCG-ATTTTAGTTTCA
6858262 AAAACTATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 8 0.27
20 18 0.60
21 4 0.13
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.45
Consensus pattern (19 bp):
GCGATTTTAGTTTCACGTT
Found at i:6858613 original size:22 final size:22
Alignment explanation
Indices: 6858582--6858628 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
6858572 AGGAGGGTCA
*
6858582 CCGGATATGGGAACAGATGTCG
1 CCGGAGATGGGAACAGATGTCG
* *
6858604 CCGGAGATGGGGACGGATGTCG
1 CCGGAGATGGGAACAGATGTCG
6858626 CCG
1 CCG
6858629 TAGAGAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.43, T:0.15
Consensus pattern (22 bp):
CCGGAGATGGGAACAGATGTCG
Found at i:6858818 original size:20 final size:20
Alignment explanation
Indices: 6858776--6858821 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6858766 TAAGCGCTCT
* **
6858776 TTGCGAATTTGACTTTTTTG
1 TTGCGAATTTGACTTCTGAG
6858796 TTGCGAATTTGACTTCTGAG
1 TTGCGAATTTGACTTCTGAG
6858816 TTGCGA
1 TTGCGA
6858822 TTTACATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.24, T:0.46
Consensus pattern (20 bp):
TTGCGAATTTGACTTCTGAG
Found at i:6878305 original size:19 final size:19
Alignment explanation
Indices: 6878273--6878321 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
6878263 ATGACCAACA
* * * *
6878273 AATTCACAATGCGATCTCG
1 AATTCGCAACGCGAACTCC
6878292 AATTCGCAACGCGAACTCC
1 AATTCGCAACGCGAACTCC
6878311 AATTTCGCAAC
1 AA-TTCGCAAC
6878322 TCAGTTTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.22
Consensus pattern (19 bp):
AATTCGCAACGCGAACTCC
Found at i:6878382 original size:41 final size:40
Alignment explanation
Indices: 6878291--6878433 Score: 103
Period size: 40 Copynumber: 3.5 Consensus size: 40
6878281 ATGCGATCTC
* * ** * *
6878291 GAATTCGCAACGCGAACTCCAATTTCGCAACTC-AGTTTCC
1 GAATTCGCAACACGAATTTTAAATTCGCAACTCGA-TTTCT
* *
6878331 AAATTTGCAACACTGAATTTTAAATTCGCAACTCGATTTCT
1 GAATTCGCAACAC-GAATTTTAAATTCGCAACTCGATTTCT
* ** **
6878372 GAATTCGCAACGCGAATTTT-GTTGTATCAACTCGATTT-T
1 GAATTCGCAACACGAATTTTAAAT-TCGCAACTCGATTTCT
*
6878411 CGAATTCGCAACACAAATTTTAA
1 -GAATTCGCAACACGAATTTTAA
6878434 TTTCTAGTTT
Statistics
Matches: 80, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
39 2 0.03
40 47 0.59
41 30 0.38
42 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.32
Consensus pattern (40 bp):
GAATTCGCAACACGAATTTTAAATTCGCAACTCGATTTCT
Found at i:6878607 original size:14 final size:15
Alignment explanation
Indices: 6878588--6878625 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
6878578 TCCCCATCTC
6878588 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
6878602 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
6878618 TAATTTTT
1 TAATTTTT
6878626 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:6879612 original size:12 final size:12
Alignment explanation
Indices: 6879595--6879619 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6879585 ATATAACCCT
6879595 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6879607 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6879619 G
1 G
6879620 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:6881691 original size:18 final size:18
Alignment explanation
Indices: 6881657--6881692 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6881647 AAGAAAAAGG
**
6881657 AAATCAAAATCGTAATCA
1 AAATCAAAATCCCAATCA
6881675 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
6881693 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:6882065 original size:20 final size:20
Alignment explanation
Indices: 6881938--6882065 Score: 130
Period size: 20 Copynumber: 6.2 Consensus size: 20
6881928 AAATCGCAAC
*
6881938 GCGAAGTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
* *
6881958 GCGAATTTGGCTTTCACGTT
1 GCGAATTTGACTTTCGCGTT
6881978 GCGAATTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
* * ***
6881998 GCGAATTTAACTATCGCAAC
1 GCGAATTTGACTTTCGCGTT
**
6882018 GCGAATTTGACTTTCGCAACCAT
1 GCGAATTTGACTTTCG---CGTT
*
6882041 GCGAATTTGAATTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
6882061 GCGAA
1 GCGAA
6882066 AGTGTACCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
20 71 0.81
23 17 0.19
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (20 bp):
GCGAATTTGACTTTCGCGTT
Found at i:6882221 original size:63 final size:64
Alignment explanation
Indices: 6882130--6882270 Score: 230
Period size: 64 Copynumber: 2.2 Consensus size: 64
6882120 AAACAAAAAA
*
6882130 CAACTTTTACAAATCAATTAAACAAGC-AAAAATAAGAATTATTTACACATCAATTAAACAAAT
1 CAACTTTTACAAATCAAATAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAACAAAT
** * *
6882193 CAACTTTTACAAATCAAATAAACAAGCAAAAAATAATTATTATTTCCTCATCAATTAAACAAAT
1 CAACTTTTACAAATCAAATAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAACAAAT
6882257 CAACTTTTACAAAT
1 CAACTTTTACAAAT
6882271 ACATCAATTT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
63 26 0.36
64 46 0.64
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (64 bp):
CAACTTTTACAAATCAAATAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAACAAAT
Found at i:6883650 original size:21 final size:20
Alignment explanation
Indices: 6883621--6883734 Score: 79
Period size: 21 Copynumber: 5.5 Consensus size: 20
6883611 GTGAATCGGG
*
6883621 CTCTCGAACGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGG-C
* *
6883642 CTCTTGAACGAT-GCAGGGGC
1 CTCTTGAACGGTGGGA-GGGC
* *
6883662 CTCTTGAACGGTGAGATGGGT
1 CTCTTGAACGGTGGGA-GGGC
**
6883683 CTCTTGAA-GGATGATAGGGGC
1 CTCTTGAACGG-TGGGA-GGGC
* *
6883704 CTCTTGAACGATAGGAGAGGC
1 CTCTTGAACGGTGGGAG-GGC
6883725 CTCTTGAACG
1 CTCTTGAACG
6883735 ATGACAAGTG
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
20 17 0.23
21 55 0.75
22 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (20 bp):
CTCTTGAACGGTGGGAGGGC
Found at i:6883729 original size:42 final size:41
Alignment explanation
Indices: 6883621--6883740 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 41
6883611 GTGAATCGGG
* * *
6883621 CTCTCGAACGGTGGGAGGGACCTCTTGAACGATG-CAGGGGC
1 CTCTTGAACGATGAGAGGG-CCTCTTGAACGATGACAGGGGC
* * * *
6883662 CTCTTGAACGGTGAGATGGGTCTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGATGAGA-GGGCCTCTTGAACGATGACAGGGGC
6883704 CTCTTGAACGAT-AGGAGAGGCCTCTTGAACGATGACA
1 CTCTTGAACGATGA-GAG-GGCCTCTTGAACGATGACA
6883741 AGTGCTTCGG
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 28 0.42
42 38 0.58
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGATGAGAGGGCCTCTTGAACGATGACAGGGGC
Found at i:6883735 original size:21 final size:20
Alignment explanation
Indices: 6883641--6883737 Score: 88
Period size: 21 Copynumber: 4.7 Consensus size: 20
6883631 GTGGGAGGGA
* *
6883641 CCTCTTGAACGATGCAGGGG
1 CCTCTTGAACGATGGAGAGG
*
6883661 CCTCTTGAACGGT-GAGATGGG
1 CCTCTTGAACGATGGAGA--GG
* * * *
6883682 TCTCTTGAAGGATGATAGGGG
1 CCTCTTGAACGATG-GAGAGG
6883703 CCTCTTGAACGATAGGAGAGG
1 CCTCTTGAACGAT-GGAGAGG
6883724 CCTCTTGAACGATG
1 CCTCTTGAACGATG
6883738 ACAAGTGCTT
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.03
20 13 0.22
21 42 0.70
22 1 0.02
23 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.24
Consensus pattern (20 bp):
CCTCTTGAACGATGGAGAGG
Found at i:6883901 original size:12 final size:12
Alignment explanation
Indices: 6883882--6883923 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
6883872 AGGCTGCTAA
*
6883882 AAATAAATTAAT
1 AAATAAATCAAT
*
6883894 ACATAAATCAAT
1 AAATAAATCAAT
6883906 AAATAAA-CAAAT
1 AAATAAATC-AAT
6883918 AAATAA
1 AAATAA
6883924 TGCCGAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATAAATCAAT
Found at i:6884110 original size:21 final size:21
Alignment explanation
Indices: 6884055--6884129 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 21
6884045 GTAAAGTAGA
*
6884055 TACCTCACCACGTAAAGCACCA
1 TACCTCACCACGTAAAG-ACCC
** * *
6884077 T-TGTCATCGCGTAAA-ACCTC
1 TACCTCACCACGTAAAGACC-C
*
6884097 TACCTCACCACGTAAAGACCG
1 TACCTCACCACGTAAAGACCC
*
6884118 TACCTCATCACG
1 TACCTCACCACG
6884130 CCATGAACCA
Statistics
Matches: 39, Mismatches: 11, Indels: 7
0.68 0.19 0.12
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 31 0.79
22 4 0.10
ACGTcount: A:0.31, C:0.37, G:0.12, T:0.20
Consensus pattern (21 bp):
TACCTCACCACGTAAAGACCC
Done.