Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 37
Found at i:7354659 original size:37 final size:38
Alignment explanation
Indices: 7354580--7354683 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 38
7354570 CATCGAATGC
*** * *
7354580 ATTTTATTAGGATTCAAA-AAATAAACATAGCGTTAGA
1 ATTTTATTAGGATTCAAACTCCTAAAAATAGCGATAGA
*
7354617 GTTTTATTAGGATTCAAACTCCTAAAAATAG-GATAGA
1 ATTTTATTAGGATTCAAACTCCTAAAAATAGCGATAGA
* *
7354654 ATTTTACTAGGATTCAAACTCCAAAAAATA
1 ATTTTATTAGGATTCAAACTCCTAAAAATA
7354684 AGATCCATAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 49 0.86
38 8 0.14
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (38 bp):
ATTTTATTAGGATTCAAACTCCTAAAAATAGCGATAGA
Found at i:7355309 original size:42 final size:37
Alignment explanation
Indices: 7355249--7355339 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 37
7355239 TTAGAATACA
* *
7355249 TATATATATATATGCTATTTCTTATTATCTGTTTTATTAATT
1 TATATATATATTTACTA-TT-TT-TTATCT-TTTTATTAA-T
* *
7355291 TATATATATATTTACTATTTTTTATGTTTTTATTTAT
1 TATATATATATTTACTATTTTTTATCTTTTTATTAAT
7355328 TATATATATATT
1 TATATATATATT
7355340 ATTTTTACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
37 13 0.29
38 8 0.18
39 5 0.11
40 2 0.04
41 2 0.04
42 15 0.33
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (37 bp):
TATATATATATTTACTATTTTTTATCTTTTTATTAAT
Found at i:7355347 original size:42 final size:44
Alignment explanation
Indices: 7355281--7355376 Score: 98
Period size: 42 Copynumber: 2.3 Consensus size: 44
7355271 TATTATCTGT
*
7355281 TTTATTAATTTATATATA--TATTTACTATT-TT-TTATGT-TTTTA
1 TTTATT-ATATATATATATATATTTACT-TTATTATTAT-TATTTTA
*
7355323 TTTATTATATATATAT-TATTTTTACTTTATTATTATTATTTTA
1 TTTATTATATATATATATATATTTACTTTATTATTATTATTTTA
7355366 TTTA-TATATAT
1 TTTATTATATAT
7355377 TTTTCTTCGT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
41 11 0.23
42 23 0.49
43 13 0.28
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (44 bp):
TTTATTATATATATATATATATTTACTTTATTATTATTATTTTA
Found at i:7355351 original size:25 final size:24
Alignment explanation
Indices: 7355317--7355377 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
7355307 ATTTTTTATG
7355317 TTTTTATTTATTA-TATATATATTA
1 TTTTTATTTATTATTAT-TATATTA
*
7355341 TTTTTACTTTATTATTATTATTTTA
1 TTTTTA-TTTATTATTATTATATTA
* *
7355366 TTTATATATATT
1 TTTTTATTTATT
7355378 TTTCTTCGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 11 0.34
25 18 0.56
26 3 0.09
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTTATTTATTATTATTATATTA
Found at i:7355359 original size:35 final size:33
Alignment explanation
Indices: 7355281--7355380 Score: 87
Period size: 34 Copynumber: 2.9 Consensus size: 33
7355271 TATTATCTGT
* *
7355281 TTTATTAATTTATATATATATTTACTATTTTTTATG
1 TTTATT-ATTTAT-TATATATATATTA-TTTTTATG
*
7355317 TTT-TTATTTATTATATATATATTATTTTTA-C
1 TTTATTATTTATTATATATATATTATTTTTATG
* *
7355348 TTTATTATTATTATTTTATTTATATATATTTTT
1 TTTATTA-T-TTATTATATATATAT-TATTTTT
7355381 CTTCGTTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
31 3 0.05
32 9 0.16
33 12 0.22
34 19 0.35
35 9 0.16
36 3 0.05
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (33 bp):
TTTATTATTTATTATATATATATTATTTTTATG
Found at i:7359044 original size:13 final size:13
Alignment explanation
Indices: 7359026--7359050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7359016 TTTATAAGAA
7359026 AAATGATATGAAT
1 AAATGATATGAAT
7359039 AAATGATATGAA
1 AAATGATATGAA
7359051 CTGTTATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (13 bp):
AAATGATATGAAT
Found at i:7359244 original size:62 final size:62
Alignment explanation
Indices: 7359124--7359246 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
7359114 AGGGTCGAGG
* * *
7359124 GTTTACCTATGTTCTTCGGGACATATGGATTGTTTACCTATGTTCTTCGGGACATATGGACC
1 GTTTACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAACATATGGACC
*
7359186 GTTTACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTTGGAATC-TATGGAC
1 GTTTACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAA-CATATGGAC
7359247 TGGTCCTTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
62 55 0.98
63 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (62 bp):
GTTTACCTATGTTCTTCGGGACATATGGACTGTTTACCTAGGTTCTTCGGAACATATGGACC
Found at i:7359248 original size:31 final size:31
Alignment explanation
Indices: 7359124--7359232 Score: 191
Period size: 31 Copynumber: 3.5 Consensus size: 31
7359114 AGGGTCGAGG
*
7359124 GTTTACCTATGTTCTTCGGGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
7359155 GTTTACCTATGTTCTTCGGGACATATGGACC
1 GTTTACCTATGTTCTTCGGGACATATGGACT
7359186 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
7359217 GTTTACCTAGGTTCTT
1 GTTTACCTATGTTCTT
7359233 TGGAATCTAT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:7359976 original size:21 final size:21
Alignment explanation
Indices: 7359952--7360010 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
7359942 TATGGAAGTT
7359952 ACTGTAGCAGTGCATCGGTAC
1 ACTGTAGCAGTGCATCGGTAC
*
7359973 ACTGTAGCAGTGCATCGGTTC
1 ACTGTAGCAGTGCATCGGTAC
7359994 ACTGTAGCAGTGCATCG
1 ACTGTAGCAGTGCATCG
7360011 ACACACAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGGTAC
Found at i:7360063 original size:21 final size:21
Alignment explanation
Indices: 7360037--7360078 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7360027 CGATGTTTTT
*
7360037 GTGCATCGGTACACTGTAGCA
1 GTGCATCGGTACACTATAGCA
7360058 GTGCATCGGTACACTATAGCA
1 GTGCATCGGTACACTATAGCA
7360079 TTGTTCATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (21 bp):
GTGCATCGGTACACTATAGCA
Found at i:7360129 original size:22 final size:23
Alignment explanation
Indices: 7360078--7360133 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
7360068 ACACTATAGC
*
7360078 ATTGTTCATGATATTGTTCACGAT
1 ATTGTTCAT-ATACTGTTCACGAT
*
7360102 ACTGTTCAT-TACTGTTCAC-AGT
1 ATTGTTCATATACTGTTCACGA-T
7360124 ATTGTTCATA
1 ATTGTTCATA
7360134 CCATATAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 1 0.04
22 18 0.67
24 8 0.30
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (23 bp):
ATTGTTCATATACTGTTCACGAT
Found at i:7362008 original size:28 final size:27
Alignment explanation
Indices: 7361971--7362036 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
7361961 ATTTTTAAAT
*
7361971 TTAAATTAAAAA-TATTAAAGTATGAAGA
1 TTAAAATAAAAATTATTAAAG-AT-AAGA
*
7361999 TTAAAATAAAAATTTATTAAAGATAATA
1 TTAAAATAAAAA-TTATTAAAGATAAGA
*
7362027 ATAAAATAAA
1 TTAAAATAAA
7362037 TAAATAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 23 0.70
29 2 0.06
30 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (27 bp):
TTAAAATAAAAATTATTAAAGATAAGA
Found at i:7365029 original size:25 final size:25
Alignment explanation
Indices: 7364997--7365053 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
7364987 ATAAATGTTA
7364997 AACATTTTAGGTAGTATCCAATATT
1 AACATTTTAGGTAGTATCCAATATT
*
7365022 AACATTTTAGGTAGTGTCCAATATT
1 AACATTTTAGGTAGTATCCAATATT
7365047 AACATTT
1 AACATTT
7365054 CCTATAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (25 bp):
AACATTTTAGGTAGTATCCAATATT
Found at i:7369586 original size:103 final size:103
Alignment explanation
Indices: 7369474--7369691 Score: 393
Period size: 103 Copynumber: 2.1 Consensus size: 103
7369464 AAATTTGAGT
*
7369474 TTTTTTGTATGGTTTCTTCTTCCTTCCGGGTTTGAACTTGATAGAATTTTGAGGACCAATTTTAA
1 TTTTTTGTATGATTTCTTCTTCCTTCCGGGTTTGAACTTGATAGAATTTTGAGGACCAATTTTAA
*
7369539 CATTTGGATGGATGAATTTTACTGCAGTACAATACTGG
66 CATTTGGATGGATGAATTTTACGGCAGTACAATACTGG
7369577 TTTTTTGTATGATTTCTTCTTCCTTCCGGGTTTGAACTTGATAGAATTTTGAGGACCAATTTTAA
1 TTTTTTGTATGATTTCTTCTTCCTTCCGGGTTTGAACTTGATAGAATTTTGAGGACCAATTTTAA
*
7369642 CATTTGGATGGATGAATTTTACGGCAGTTCAATACTGG
66 CATTTGGATGGATGAATTTTACGGCAGTACAATACTGG
*
7369680 TTTATTG-ATGAT
1 TTTTTTGTATGAT
7369692 CCGCTTCCTC
Statistics
Matches: 111, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
102 5 0.05
103 106 0.95
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.44
Consensus pattern (103 bp):
TTTTTTGTATGATTTCTTCTTCCTTCCGGGTTTGAACTTGATAGAATTTTGAGGACCAATTTTAA
CATTTGGATGGATGAATTTTACGGCAGTACAATACTGG
Found at i:7372454 original size:15 final size:15
Alignment explanation
Indices: 7372436--7372468 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7372426 AAATTTTAAA
7372436 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
7372451 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
7372466 TAT
1 TAT
7372469 ATATGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:7379551 original size:104 final size:104
Alignment explanation
Indices: 7379437--7379641 Score: 347
Period size: 104 Copynumber: 2.0 Consensus size: 104
7379427 TATTGGTTCA
** * *
7379437 ATTATAAATTTATTTATTGTCTTGTTTATAAGTTGTCAACTCTTTTATAAATTTGTTTATTCAAT
1 ATTATAAATTTATTTACCGTCTCGTTTATAAGTTGTCAACTCGTTTATAAATTTGTTTATTCAAT
* * *
7379502 TTTAATTTTTCTTCCTTTTATAATTTAAATATTGACTTG
66 TTTAATTTTTCTACCGTCTATAATTTAAATATTGACTTG
7379541 ATTATAAATTTATTTACCGTCTCGTTTATAAGTTGTCAACTCGTTTATAAATTTGTTTATTCAAT
1 ATTATAAATTTATTTACCGTCTCGTTTATAAGTTGTCAACTCGTTTATAAATTTGTTTATTCAAT
7379606 TTTAATTTTTCTACCGTCTATAATTTAAATATTGAC
66 TTTAATTTTTCTACCGTCTATAATTTAAATATTGAC
7379642 GATGATAAAA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
104 94 1.00
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.53
Consensus pattern (104 bp):
ATTATAAATTTATTTACCGTCTCGTTTATAAGTTGTCAACTCGTTTATAAATTTGTTTATTCAAT
TTTAATTTTTCTACCGTCTATAATTTAAATATTGACTTG
Found at i:7383396 original size:29 final size:29
Alignment explanation
Indices: 7383354--7383413 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
7383344 ATTCTACAGT
7383354 GATCTCGTAGGACGCCATGCAATCCAGGC
1 GATCTCGTAGGACGCCATGCAATCCAGGC
*
7383383 GATCTTGTAGGACGCCATGCAATCCAGGC
1 GATCTCGTAGGACGCCATGCAATCCAGGC
7383412 GA
1 GA
7383414 CATACGGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.18
Consensus pattern (29 bp):
GATCTCGTAGGACGCCATGCAATCCAGGC
Found at i:7383547 original size:32 final size:32
Alignment explanation
Indices: 7383506--7383584 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
7383496 TATACGAGGT
7383506 GAGGTCGCCATGCAGACGAGCCAGCCAATGGA
1 GAGGTCGCCATGCAGACGAGCCAGCCAATGGA
*
7383538 GAGGTCGCCATGCAAACGAGCCAGCCAATGGA
1 GAGGTCGCCATGCAGACGAGCCAGCCAATGGA
7383570 GAGGTCGCCATGCAG
1 GAGGTCGCCATGCAG
7383585 TCTGGGCGAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.28, C:0.28, G:0.34, T:0.10
Consensus pattern (32 bp):
GAGGTCGCCATGCAGACGAGCCAGCCAATGGA
Found at i:7383615 original size:29 final size:29
Alignment explanation
Indices: 7383571--7383665 Score: 163
Period size: 29 Copynumber: 3.3 Consensus size: 29
7383561 GCCAATGGAG
* **
7383571 AGGTCGCCATGCAGTCTGGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
7383600 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
7383629 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
7383658 AGGTCGCC
1 AGGTCGCC
7383666 CCGGCGTCAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.14, C:0.31, G:0.33, T:0.23
Consensus pattern (29 bp):
AGGTCGCCATGTAGTCCCGGCGACCTTGT
Found at i:7383766 original size:50 final size:49
Alignment explanation
Indices: 7383700--7383797 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 49
7383690 CATGCATGCA
7383700 CATGCAGCCAAGATAACTTCACGTGCTCCTGCTCCCCGCTGCATGCCTG
1 CATGCAGCCAAGATAACTTCACGTGCTCCTGCTCCCCGCTGCATGCCTG
7383749 CATGCATGCCAAGATAACTTCACGTGCTCCTGCTCCCCGCTGCATGCCT
1 CATGCA-GCCAAGATAACTTCACGTGCTCCTGCTCCCCGCTGCATGCCT
7383798 ACAGCTATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 6 0.12
50 42 0.88
ACGTcount: A:0.18, C:0.39, G:0.19, T:0.23
Consensus pattern (49 bp):
CATGCAGCCAAGATAACTTCACGTGCTCCTGCTCCCCGCTGCATGCCTG
Found at i:7383994 original size:16 final size:16
Alignment explanation
Indices: 7383973--7384023 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
7383963 GATTGCTCAC
7383973 GAGAAAGAAAGAAAGG
1 GAGAAAGAAAGAAAGG
*
7383989 GAGAAAGAAAGGAAAGT
1 GAGAAAGAAA-GAAAGG
*
7384006 AAG-AAG-AAGAAAGG
1 GAGAAAGAAAGAAAGG
7384020 GAGA
1 GAGA
7384024 TAAGGTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 7 0.24
15 2 0.07
16 13 0.45
17 7 0.24
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (16 bp):
GAGAAAGAAAGAAAGG
Found at i:7384050 original size:16 final size:18
Alignment explanation
Indices: 7384029--7384067 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
7384019 GGAGATAAGG
*
7384029 TAAATTTGTTTA-TATT-
1 TAAATTAGTTTATTATTA
7384045 TAAATTAGTTTATTATTA
1 TAAATTAGTTTATTATTA
7384063 TAAAT
1 TAAAT
7384068 GTTAATTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 4 0.20
18 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TAAATTAGTTTATTATTA
Found at i:7384215 original size:47 final size:47
Alignment explanation
Indices: 7384172--7384262 Score: 127
Period size: 45 Copynumber: 2.0 Consensus size: 47
7384162 TTATATAGTT
7384172 AAAAAA-TAATTAATTAGTTTGTT-TT-GTT-AATAGTTAGTTATATA
1 AAAAAATTAATTAATTAGTTT-TTGTTAGTTAAATAGTTAGTTATATA
*
7384216 AAAAAATTATTTAATTAGTTTTTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAATTAATTAATTAGTTTTTGTTAGTTAAATAGTT-AGTTATAT
7384263 TTGTTTGTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
44 8 0.20
45 15 0.37
46 3 0.07
47 7 0.17
48 8 0.20
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (47 bp):
AAAAAATTAATTAATTAGTTTTTGTTAGTTAAATAGTTAGTTATATA
Found at i:7384339 original size:32 final size:33
Alignment explanation
Indices: 7384303--7384379 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 33
7384293 TTAGTTAGTA
*
7384303 AGTTTATTAGTAG-TATA-TTATAATGAAAAAAT
1 AGTTTATTAGTAGTTATAGTTAT-ATAAAAAAAT
*
7384335 AGTTTATTAGTTAGTTTTAGTTATATAAAAAAAT
1 AGTTTATTAG-TAGTTATAGTTATATAAAAAAAT
*
7384369 ATTTTATTAGT
1 AGTTTATTAGT
7384380 TGTTTAAGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.26
33 4 0.10
34 21 0.54
35 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (33 bp):
AGTTTATTAGTAGTTATAGTTATATAAAAAAAT
Found at i:7384457 original size:16 final size:16
Alignment explanation
Indices: 7384425--7384471 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
7384415 TTTAAAAAGT
*
7384425 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
7384441 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
7384457 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
7384472 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:7384466 original size:15 final size:14
Alignment explanation
Indices: 7384446--7384476 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7384436 GTTTATTAGT
7384446 TTATTATATTATAAG
1 TTATTATATTA-AAG
7384461 TTATTATATTAAAG
1 TTATTATATTAAAG
7384475 TT
1 TT
7384477 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:7386647 original size:17 final size:17
Alignment explanation
Indices: 7386625--7386657 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7386615 CAATGATGTT
*
7386625 TAGTATCAAATCATTAC
1 TAGTATCAAATAATTAC
7386642 TAGTATCAAATAATTA
1 TAGTATCAAATAATTA
7386658 AATATTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.36
Consensus pattern (17 bp):
TAGTATCAAATAATTAC
Found at i:7386886 original size:14 final size:14
Alignment explanation
Indices: 7386867--7386906 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7386857 TAGTAATAAT
7386867 TATTAAATCATTAG
1 TATTAAATCATTAG
*
7386881 TATTAAATCATTAT
1 TATTAAATCATTAG
*
7386895 TA-TAAATAATTA
1 TATTAAATCATTA
7386907 CTAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (14 bp):
TATTAAATCATTAG
Found at i:7386956 original size:12 final size:12
Alignment explanation
Indices: 7386849--7386958 Score: 73
Period size: 13 Copynumber: 8.9 Consensus size: 12
7386839 TTAGTATTCT
7386849 ATAATTATTAGTA
1 ATAATTATTA-TA
7386862 ATAATTATTA-A
1 ATAATTATTATA
* *
7386873 ATCATTAGTATTAA
1 ATAATTATTA-T-A
*
7386887 ATCATTATTATAA
1 ATAATTATTAT-A
*
7386900 ATAATTACTA-A
1 ATAATTATTATA
**
7386911 ATAA-TAACATA
1 ATAATTATTATA
7386922 ATAATTATTATAAA
1 ATAATTATTAT--A
*
7386936 ATCATTATTATA
1 ATAATTATTATA
*
7386948 ATGATTATTAT
1 ATAATTATTAT
7386959 CAAATCATTA
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
10 3 0.04
11 19 0.24
12 15 0.19
13 21 0.27
14 21 0.27
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (12 bp):
ATAATTATTATA
Found at i:7386963 original size:26 final size:26
Alignment explanation
Indices: 7386865--7387092 Score: 165
Period size: 26 Copynumber: 9.2 Consensus size: 26
7386855 ATTAGTAATA
* * *
7386865 ATTATTA-AATCATTAGTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7386890 ATTATTATAA--ATAATTA-CTAAAT-
1 ATTATTATAATGATTATTATC-AAATC
* ** * *
7386913 AATAACATAATAATTATTATAAAATC
1 ATTATTATAATGATTATTATCAAATC
7386939 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7386965 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7386988 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
* *
7387011 ATTTTTATAATGATTATGA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
7387037 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7387063 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
7387089 ATTA
1 ATTA
7387093 CTAAATCATC
Statistics
Matches: 156, Mismatches: 33, Indels: 27
0.72 0.15 0.12
Matches are distributed among these distances:
21 4 0.03
22 2 0.01
23 21 0.13
24 15 0.10
25 23 0.15
26 90 0.58
27 1 0.01
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (26 bp):
ATTATTATAATGATTATTATCAAATC
Found at i:7387089 original size:124 final size:123
Alignment explanation
Indices: 7386881--7387150 Score: 436
Period size: 124 Copynumber: 2.2 Consensus size: 123
7386871 AAATCATTAG
* * * *
7386881 TATTAAATCATTATTATAA--ATAATTACTAAATAATAACATAATAATTATTATAAAATCATTAT
1 TATTAAATCATTTTTATAATGATTATGACTAAATAATAACATAATAATTATTATAAAATCATTAC
7386944 TATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 TATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
* ** * *
7387002 TATTAAATCATTTTTATAATGATTATGACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATGACTAAAT-AATAACATAATAATTATTATAAAATCATTA
7387067 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
65 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
7387126 TATTAAATCATTTTTATAATGATTA
1 TATTAAATCATTTTTATAATGATTA
7387151 ATAAATACAT
Statistics
Matches: 137, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
121 18 0.13
123 11 0.08
124 108 0.79
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.43
Consensus pattern (123 bp):
TATTAAATCATTTTTATAATGATTATGACTAAATAATAACATAATAATTATTATAAAATCATTAC
TATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
Found at i:7390054 original size:26 final size:24
Alignment explanation
Indices: 7389994--7390054 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
7389984 TACTAATATT
*
7389994 ATTAATAATGATTTAATAATTATT
1 ATTAATAATGATTTAATAATTATG
* *
7390018 ATTAATCTAATGATTTGATATTTAATG
1 ATTAA--TAATGATTTAATAATT-ATG
7390045 ATTTAATAAT
1 A-TTAATAAT
7390055 AATATGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 5 0.17
26 18 0.60
27 3 0.10
28 4 0.13
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (24 bp):
ATTAATAATGATTTAATAATTATG
Found at i:7390313 original size:18 final size:18
Alignment explanation
Indices: 7390290--7390352 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
7390280 AATATAAATA
7390290 AAACAAAATATTTTTTTT
1 AAACAAAATATTTTTTTT
* ** *
7390308 AAACAACACTAAATATTTT
1 AAACAA-AATATTTTTTTT
*
7390327 AAACACAATATTTTTTTT
1 AAACAAAATATTTTTTTT
7390345 AAACAAAA
1 AAACAAAA
7390353 ATTATCTCGC
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
18 21 0.62
19 13 0.38
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (18 bp):
AAACAAAATATTTTTTTT
Found at i:7390441 original size:14 final size:14
Alignment explanation
Indices: 7390422--7390448 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7390412 CACATACACA
7390422 ACAACAAAAAATAG
1 ACAACAAAAAATAG
7390436 ACAACAAAAAATA
1 ACAACAAAAAATA
7390449 ATAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.15, G:0.04, T:0.07
Consensus pattern (14 bp):
ACAACAAAAAATAG
Found at i:7390441 original size:17 final size:17
Alignment explanation
Indices: 7390419--7390451 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7390409 TTACACATAC
7390419 ACAACAACAAAA-AATAG
1 ACAACAA-AAAATAATAG
7390436 ACAACAAAAAATAATA
1 ACAACAAAAAATAATA
7390452 AATTACTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.73, C:0.15, G:0.03, T:0.09
Consensus pattern (17 bp):
ACAACAAAAAATAATAG
Found at i:7390880 original size:21 final size:21
Alignment explanation
Indices: 7390847--7390895 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7390837 TAATATATAT
*
7390847 ATAACTTAAACTAACCAACTA
1 ATAACTTAAACTAACAAACTA
* *
7390868 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
7390889 ATTAACT
1 A-TAACT
7390896 AGATTTTAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:7391367 original size:35 final size:35
Alignment explanation
Indices: 7391327--7391394 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
7391317 TGGATGCAAC
*
7391327 GCATGCATGAGTGATACAGTTAAAGCTTGGTCGTT
1 GCATGCATGAGTGATACAGTTAAAGCTGGGTCGTT
*
7391362 GCATGCATGAGTGCTACAGTTAAAGCTGGGTCG
1 GCATGCATGAGTGATACAGTTAAAGCTGGGTCG
7391395 CGATGCAGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (35 bp):
GCATGCATGAGTGATACAGTTAAAGCTGGGTCGTT
Found at i:7391451 original size:12 final size:12
Alignment explanation
Indices: 7391434--7391458 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7391424 TCCATGGCGA
7391434 CCTACCACCTAC
1 CCTACCACCTAC
7391446 CCTACCACCTAC
1 CCTACCACCTAC
7391458 C
1 C
7391459 ATGTCGTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.60, G:0.00, T:0.16
Consensus pattern (12 bp):
CCTACCACCTAC
Found at i:7391485 original size:29 final size:29
Alignment explanation
Indices: 7391452--7391522 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
7391442 CTACCCTACC
7391452 ACCTACCATGTCGTAGGGACTCCATGGCG
1 ACCTACCATGTCGTAGGGACTCCATGGCG
*
7391481 ACCTACCATGTCGTCGGGACTCCATGGCG
1 ACCTACCATGTCGTAGGGACTCCATGGCG
7391510 ACCTACCATGTCG
1 ACCTACCATGTCG
7391523 CGATGTCGCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21
Consensus pattern (29 bp):
ACCTACCATGTCGTAGGGACTCCATGGCG
Found at i:7391733 original size:22 final size:22
Alignment explanation
Indices: 7391708--7391759 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
7391698 AAGCAGCATC
7391708 AGCGAGCAACAGCGGCCACCAA
1 AGCGAGCAACAGCGGCCACCAA
7391730 AGCGAGCAACAGCGGCCACCAA
1 AGCGAGCAACAGCGGCCACCAA
7391752 AGC-AGCAA
1 AGCGAGCAA
7391760 ATCTTATAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.38, C:0.35, G:0.27, T:0.00
Consensus pattern (22 bp):
AGCGAGCAACAGCGGCCACCAA
Found at i:7391805 original size:29 final size:29
Alignment explanation
Indices: 7391767--7391852 Score: 172
Period size: 29 Copynumber: 3.0 Consensus size: 29
7391757 CAAATCTTAT
7391767 AGGACGCCGGGCGTGCATGGCGACCTATA
1 AGGACGCCGGGCGTGCATGGCGACCTATA
7391796 AGGACGCCGGGCGTGCATGGCGACCTATA
1 AGGACGCCGGGCGTGCATGGCGACCTATA
7391825 AGGACGCCGGGCGTGCATGGCGACCTAT
1 AGGACGCCGGGCGTGCATGGCGACCTAT
7391853 GTTGCCACTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.14
Consensus pattern (29 bp):
AGGACGCCGGGCGTGCATGGCGACCTATA
Found at i:7397587 original size:16 final size:17
Alignment explanation
Indices: 7397556--7397588 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7397546 ATATGTTTTC
*
7397556 TTTTAAAAAATTATTAT
1 TTTTAAAAAATAATTAT
7397573 TTTTAAAAAA-AATTAT
1 TTTTAAAAAATAATTAT
7397589 ATAATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAAAATAATTAT
Found at i:7402962 original size:4 final size:4
Alignment explanation
Indices: 7402948--7403063 Score: 64
Period size: 4 Copynumber: 29.5 Consensus size: 4
7402938 AATATTATAC
** * * * * *
7402948 AATA AAT- AATA AATA AAT- GTTA AATG AATA AAAA AAGAA AAAA AATG
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA-TA AATA AATA
* * *
7402995 AATGA AATA AAAA AAT- AA-A AATA AA-A GAAGTA AA-A AATG AATG AATA
1 AAT-A AATA AATA AATA AATA AATA AATA -AA-TA AATA AATA AATA AATA
7403042 AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AA
7403064 AATAAAAAGT
Statistics
Matches: 88, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
3 12 0.14
4 66 0.75
5 9 0.10
6 1 0.01
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:7404414 original size:84 final size:84
Alignment explanation
Indices: 7404244--7404861 Score: 637
Period size: 84 Copynumber: 7.4 Consensus size: 84
7404234 ATTTTATTGA
* * * * **
7404244 CAGATAACCCTTCTTGCCTTGAGCTATGCTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
7404309 ACTCGAAGGTCTTCGGTTGG
66 ACTCGAAGGTCTTTGG-TGG
* * * * * * *
7404329 CAGATAACCCTTCTCGACTTAAGTTATACTACAAATGATGTG-CATTGGAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
7404393 ACTCGAAGGTCTTTTGGTGG
66 ACTCGAAGGTC-TTTGGTGG
* * * * *
7404413 CAGATAACCCTTCTAGGCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* *
7404478 ACTCGAGGGTCTTTGACTGG
66 ACTCGAAGGTCTTTG-GTGG
* * * * * * * *
7404498 CAGATAACCCTTCTCGACTTAAGCTATGTTGCAAATGATATGCCGTTGAATC-GAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
**
7404562 ACTC-AGAGGTCTTTTTTGG
66 ACTCGA-AGGTCTTTGGTGG
* * *
7404581 TAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
7404646 ACTCG-AGTGTCTTTGGT--
66 ACTCGAAG-GTCTTTGGTGG
* * * * * * *
7404663 -AGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTTCCTTTG-AGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
7404726 ACTCGAAGGTCTTTGGTGA
66 ACTCGAAGGTCTTTGGTGG
* * * * * * *
7404745 CAGATAACCTTTCTAGCCTTGAGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCAA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* *
7404810 ACTCGAGGGT-ATT--TGG
66 ACTCGAAGGTCTTTGGTGG
* *
7404826 CAGATAACCCTTCTCGACTTAAGCTATGTTGCAAAT
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAAT
7404862 AGTTTCGTTA
Statistics
Matches: 436, Mismatches: 85, Indels: 28
0.79 0.15 0.05
Matches are distributed among these distances:
80 28 0.06
81 74 0.17
83 87 0.20
84 134 0.31
85 113 0.26
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (84 bp):
CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
ACTCGAAGGTCTTTGGTGG
Found at i:7404772 original size:164 final size:165
Alignment explanation
Indices: 7404241--7404861 Score: 827
Period size: 164 Copynumber: 3.7 Consensus size: 165
7404231 ACAATTTTAT
* * *
7404241 TGACAGATAACCCTTCTTGCCTTGAGCTATGCTATAAATGATGTGCCCTCGAAGCTGAGTGTAAT
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
* * * *
7404306 CGAACTCGAAGGTCTTCGGTTGGCAGATAACCCTTCTCGACTTAAGTTATACTACAAATGATGTG
66 CGAACTCGAGGGTCTT---TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* *
7404371 CATTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG
128 CCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGG
* * *
7404410 TGGCAGATAACCCTTCTAGGCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
* *
7404475 CGAACTCGAGGGTCTTTGACTGGCAGATAACCCTTCTCGACTTAAGCTATGTTGCAAATGATATG
66 CGAACTCGAGGGTCTTT---TGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * **
7404540 CCGTTGA-ATCGAGCGTAGTCGAACTC-AGAGGTCTTTTT
128 CCTTTGAGCT-GAGCGTAGTCGAACTCGA-AGGTCTTTGG
** * * * * *
7404578 TGGTAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGTACCCTCGAAGCTGAGTGTAAT
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
* * * *
7404643 CGAACTCGAGTGTC-TTTGGTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTTCCT
66 CGAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT
7404707 TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
131 TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
* *
7404742 TGACAGATAACCTTTCTAGCCTTGAGTTATGATGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
1 TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
* * *
7404807 CAAACTCGAGGGT-ATTTGGCAGATAACCCTTCTCGACTTAAGCTATGTTGCAAAT
66 CGAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAAT
7404862 AGTTTCGTTA
Statistics
Matches: 395, Mismatches: 49, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
164 175 0.44
165 2 0.01
166 1 0.00
167 2 0.01
168 76 0.19
169 139 0.35
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (165 bp):
TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAAT
CGAACTCGAGGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT
TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
Found at i:7408909 original size:22 final size:22
Alignment explanation
Indices: 7408884--7408953 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
7408874 AATAAATGTT
7408884 AAATGAATTAAAAGAAAGAAAA
1 AAATGAATTAAAAGAAAGAAAA
* *
7408906 AAATGAATGAAATA-AAA-AAAT
1 AAATGAATTAAA-AGAAAGAAAA
7408927 AAA--AA-TAAAAG-AAGTAAAA
1 AAATGAATTAAAAGAAAG-AAAA
7408946 AAATGAAT
1 AAATGAAT
7408954 AAATAAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
17 3 0.08
18 3 0.08
19 8 0.22
21 8 0.22
22 14 0.38
23 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (22 bp):
AAATGAATTAAAAGAAAGAAAA
Found at i:7408944 original size:23 final size:24
Alignment explanation
Indices: 7408904--7408970 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 24
7408894 AAAGAAAGAA
* *
7408904 AAAAATGAATGAAATAAAAAAAT-
1 AAAAATAAAAGAAATAAAAAAATG
*
7408927 AAAAATAAAAGAAGTAAAAAAATG
1 AAAAATAAAAGAAATAAAAAAATG
*
7408951 AATAAAT-AAATAAATAAAAA
1 AA-AAATAAAAGAAATAAAAA
7408971 TAAAAAGTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.54
24 13 0.35
25 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.16
Consensus pattern (24 bp):
AAAAATAAAAGAAATAAAAAAATG
Found at i:7408977 original size:40 final size:40
Alignment explanation
Indices: 7408892--7408975 Score: 136
Period size: 39 Copynumber: 2.1 Consensus size: 40
7408882 TTAAATGAAT
7408892 TAAAAGAAAGAAAAAAATGAATGAAATAAAAAAATAAAAA
1 TAAAAGAAAGAAAAAAATGAATGAAATAAAAAAATAAAAA
*
7408932 TAAAAG-AAGTAAAAAAATGAAT-AAATAAATAAATAAAAA
1 TAAAAGAAAG-AAAAAAATGAATGAAATAAAAAAATAAAAA
7408971 TAAAA
1 TAAAA
7408976 AGTTAAATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 24 0.57
40 18 0.43
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.15
Consensus pattern (40 bp):
TAAAAGAAAGAAAAAAATGAATGAAATAAAAAAATAAAAA
Found at i:7414547 original size:30 final size:31
Alignment explanation
Indices: 7414512--7414574 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
7414502 ATGACATGAC
* *
7414512 AAGTGATGATGTGG-TAATGTGATGTGTCTA
1 AAGTGATGATGTGGCGAATGTCATGTGTCTA
* *
7414542 AAGTGATGGTGTGGCGCATGTCATGTGTCTA
1 AAGTGATGATGTGGCGAATGTCATGTGTCTA
7414573 AA
1 AA
7414575 ATAATGACAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.33
Consensus pattern (31 bp):
AAGTGATGATGTGGCGAATGTCATGTGTCTA
Found at i:7415012 original size:21 final size:21
Alignment explanation
Indices: 7414968--7415019 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7414958 AATAATTCTC
*
7414968 TTCATGAAAAGATTAAATCAT
1 TTCATGAAAAGATTAAAGCAT
*
7414989 TTCATGAAAAGGTT-AAGCATT
1 TTCATGAAAAGATTAAAGCA-T
*
7415010 TTCATCAAAA
1 TTCATGAAAA
7415020 TGATAAGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
TTCATGAAAAGATTAAAGCAT
Found at i:7415026 original size:21 final size:22
Alignment explanation
Indices: 7414988--7415048 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 22
7414978 GATTAAATCA
* *
7414988 TTTCATGAAAAGGTTAAG-CAT
1 TTTCATCAAAAGGATAAGTCAT
*
7415009 TTTCATCAAAATGATAAGTCAT
1 TTTCATCAAAAGGATAAGTCAT
* *
7415031 TTAC-TCGAAAGGATAAGT
1 TTTCATCAAAAGGATAAGT
7415049 TCTTTAATCG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (22 bp):
TTTCATCAAAAGGATAAGTCAT
Found at i:7415054 original size:21 final size:21
Alignment explanation
Indices: 7415008--7415104 Score: 85
Period size: 21 Copynumber: 4.7 Consensus size: 21
7414998 AGGTTAAGCA
* *
7415008 TTTT-CATCAAAATGATAAGT
1 TTTTACATCGAAAGGATAAGT
*
7415028 CATTTAC-TCGAAAGGATAAGT
1 -TTTTACATCGAAAGGATAAGT
* *
7415049 TCTTTA-ATCGAAAGGTTGAGT
1 T-TTTACATCGAAAGGATAAGT
*
7415070 TTTT-CATCGAAAGGTTAAGT
1 TTTTACATCGAAAGGATAAGT
*
7415090 TTTTTCATCGAAAGG
1 TTTTACATCGAAAGG
7415105 TCTTAACCCT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
20 21 0.33
21 42 0.66
22 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
TTTTACATCGAAAGGATAAGT
Found at i:7415105 original size:21 final size:21
Alignment explanation
Indices: 7415035--7415105 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
7415025 AGTCATTTAC
* * *
7415035 TCGAAAGGATAAGTTCTTTAA
1 TCGAAAGGTTAAGTTTTTTCA
*
7415056 TCGAAAGGTTGAG-TTTTTCA
1 TCGAAAGGTTAAGTTTTTTCA
7415076 TCGAAAGGTTAAGTTTTTTCA
1 TCGAAAGGTTAAGTTTTTTCA
7415097 TCGAAAGGT
1 TCGAAAGGT
7415106 CTTAACCCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 17 0.39
21 27 0.61
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.37
Consensus pattern (21 bp):
TCGAAAGGTTAAGTTTTTTCA
Found at i:7417314 original size:23 final size:23
Alignment explanation
Indices: 7417288--7417351 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
7417278 CAACTCATAT
7417288 AATTGCACCGAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
* * *
7417311 AATTGAACC-AGAGTACCGCGTAG
1 AATTGCACCGA-AGTGCCACGTAG
*
7417334 AATTGCACCGTAGTGCCA
1 AATTGCACCGAAGTGCCA
7417352 TATAATAATG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
22 1 0.03
23 31 0.97
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:7417538 original size:103 final size:103
Alignment explanation
Indices: 7417367--7417584 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
7417357 TAATGTCCAT
* *
7417367 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
7417432 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
7417470 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
7417535 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
7417573 AAGGACCACATA
1 AAGGACCACATA
7417585 GACCATCGAC
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:7422012 original size:39 final size:39
Alignment explanation
Indices: 7421931--7422036 Score: 104
Period size: 39 Copynumber: 2.7 Consensus size: 39
7421921 TATCGAGCCA
* * * * *
7421931 AAGACTCCAAGTTTACCTGGCGTCTTCAAGCCAACCATG
1 AAGACTCCAAGCTTACCTGACGTCTTCAAGCAAAACAAG
* * *
7421970 AAGACTCCAAGCTTACCTGACGTCTTTAGGCAAAATAAG
1 AAGACTCCAAGCTTACCTGACGTCTTCAAGCAAAACAAG
* * * *
7422009 AAGACTCTAATCTTACCTGGCATCTTCA
1 AAGACTCCAAGCTTACCTGACGTCTTCA
7422037 GTCTAGGGTG
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (39 bp):
AAGACTCCAAGCTTACCTGACGTCTTCAAGCAAAACAAG
Found at i:7423674 original size:24 final size:24
Alignment explanation
Indices: 7423647--7423722 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
7423637 AATAAATACT
7423647 ATTTATTTTATAATAAGACATATG
1 ATTTATTTTATAATAAGACATATG
** * *
7423671 ATTT-TGATA-AGGATAATAAATACT-
1 ATTTATTTTATA--ATAAGACATA-TG
*
7423695 ATTTATTTTATAATAAGGCATATG
1 ATTTATTTTATAATAAGACATATG
7423719 ATTT
1 ATTT
7423723 TGATAAGGAT
Statistics
Matches: 37, Mismatches: 9, Indels: 12
0.64 0.16 0.21
Matches are distributed among these distances:
22 1 0.03
23 4 0.11
24 27 0.73
25 4 0.11
26 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTTATTTTATAATAAGACATATG
Found at i:7423686 original size:48 final size:48
Alignment explanation
Indices: 7423634--7423735 Score: 195
Period size: 48 Copynumber: 2.1 Consensus size: 48
7423624 GTACATGTAC
7423634 GATAATAAATACTATTTATTTTATAATAAGACATATGATTTTGATAAG
1 GATAATAAATACTATTTATTTTATAATAAGACATATGATTTTGATAAG
*
7423682 GATAATAAATACTATTTATTTTATAATAAGGCATATGATTTTGATAAG
1 GATAATAAATACTATTTATTTTATAATAAGACATATGATTTTGATAAG
7423730 GATAAT
1 GATAAT
7423736 TACATGAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (48 bp):
GATAATAAATACTATTTATTTTATAATAAGACATATGATTTTGATAAG
Found at i:7429588 original size:35 final size:34
Alignment explanation
Indices: 7429529--7429596 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
7429519 AAAAACATAT
*
7429529 TATATATTTATATTTTCAAAATAATATTATAAAAA
1 TATATATTTATATTTTCAAAATAAT-TAATAAAAA
7429564 TATA-ATTATATATTTT-AAATATAATTAATAAAA
1 TATATATT-TATATTTTCAAA-ATAATTAATAAAA
7429597 CGACTATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 13 0.43
35 17 0.57
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (34 bp):
TATATATTTATATTTTCAAAATAATTAATAAAAA
Found at i:7432136 original size:15 final size:15
Alignment explanation
Indices: 7432116--7432145 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7432106 GCTTCACCAC
7432116 AAGACATAATCAGTG
1 AAGACATAATCAGTG
7432131 AAGACATAATCAGTG
1 AAGACATAATCAGTG
7432146 GAGAAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (15 bp):
AAGACATAATCAGTG
Found at i:7452468 original size:26 final size:28
Alignment explanation
Indices: 7452437--7452489 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
7452427 TATTCTCTAT
7452437 TGTCCTT-TTATT-TTTT-TTTTATATTA
1 TGTCCTTATT-TTCTTTTGTTTTATATTA
7452463 TGTCCTTATTTTCTTTTGTTTTATATT
1 TGTCCTTATTTTCTTTTGTTTTATATT
7452490 TTCAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 9 0.38
27 6 0.25
28 9 0.38
ACGTcount: A:0.13, C:0.09, G:0.06, T:0.72
Consensus pattern (28 bp):
TGTCCTTATTTTCTTTTGTTTTATATTA
Found at i:7454128 original size:22 final size:24
Alignment explanation
Indices: 7454102--7454148 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7454092 TTTCAGTTAG
* *
7454102 TATTTT-TTTTAA-ATAGTTATTA
1 TATTTTATATTAATATAATTATTA
7454124 TATTTTATATTAATATAATTATTA
1 TATTTTATATTAATATAATTATTA
7454148 T
1 T
7454149 TTATTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 5 0.24
24 10 0.48
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTTTATATTAATATAATTATTA
Found at i:7454313 original size:25 final size:24
Alignment explanation
Indices: 7454273--7454331 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 24
7454263 AGCGATATGG
* *
7454273 TAATATTTTTTTTTATAATTAATGT
1 TAATATTTATTGTTATAATTAAT-T
**
7454298 TAATATTTATTGTTATGTTTAATT
1 TAATATTTATTGTTATAATTAATT
7454322 TAA-ATTTATT
1 TAATATTTATT
7454332 ATGAATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 7 0.23
24 4 0.13
25 19 0.63
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (24 bp):
TAATATTTATTGTTATAATTAATT
Found at i:7455988 original size:21 final size:21
Alignment explanation
Indices: 7455962--7456030 Score: 113
Period size: 21 Copynumber: 3.3 Consensus size: 21
7455952 TCATCTTCGT
7455962 AGGGTTACATTCCTAGCCCGC
1 AGGGTTACATTCCTAGCCCGC
7455983 AGGGTTACATTCCTAGCCCGCC
1 AGGGTTACATTCCTAGCCCG-C
*
7456005 A-GGTTACATGCCTAGCCCGC
1 AGGGTTACATTCCTAGCCCGC
7456025 AGGGTT
1 AGGGTT
7456031 TTATACCATA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 2 0.04
21 41 0.91
22 2 0.04
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (21 bp):
AGGGTTACATTCCTAGCCCGC
Found at i:7456582 original size:34 final size:34
Alignment explanation
Indices: 7456543--7456649 Score: 169
Period size: 34 Copynumber: 3.1 Consensus size: 34
7456533 ATAAATTTTT
7456543 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
* * *
7456577 TTAAAATACAAATAATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
* *
7456611 TTAAAATATAAATTATAGTATTCGAAATTTAACA
1 TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
7456645 TTAAA
1 TTAAA
7456650 TTCAACTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (34 bp):
TTAAAATAAAAATTATAGTATTCGAAATTTAAAA
Found at i:7457298 original size:127 final size:127
Alignment explanation
Indices: 7457072--7457703 Score: 1077
Period size: 127 Copynumber: 5.0 Consensus size: 127
7457062 ACGCTTTAAA
* *
7457072 GTCCCCTAAGAAATAGTAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
*
7457137 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCACGCCCCCGGGAACGCGCCTTCACG
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACG
*
7457199 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTAACATAATAGGG
1 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
7457264 CAATGATAACATATTCTCTGACAAAATAATGGAA-GCGCGCCCCCGGGAACGCGCCTTCACG
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACG
* *
7457325 GTCCCCTAAGGAATAATAGGTATTGAGATGAATAGTTCCCAGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
* * *
7457390 CAATGATAACATATTCTCTGACAAAATAATGGAAGGTGCGCCCCCGAGAACGCGGCTTCACG
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACG
* *
7457452 GTGCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCTGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
* * * ** * *
7457517 CAATGATAATATATTCTCTGAAAAAATAATGGAAGGCACGCCCCCAAGAACGCACCTTCATG
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACG
**
7457579 GTCCCCTAAAAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
7457644 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCA
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCA
7457704 AATGAATAGT
Statistics
Matches: 472, Mismatches: 32, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
126 122 0.26
127 350 0.74
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (127 bp):
GTCCCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACG
Found at i:7457520 original size:253 final size:254
Alignment explanation
Indices: 7457072--7457703 Score: 1086
Period size: 253 Copynumber: 2.5 Consensus size: 254
7457062 ACGCTTTAAA
*
7457072 GTCCCCTAAGAAATAGTAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
*
7457137 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCACGCCCCCGGGAACGCGCCTTCACGGTC
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACGGTC
7457202 CCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTAACATAATAGGGCAA
131 CCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTAACATAATAGGGCAA
* * ** *
7457267 TGATAACATATTCTCTGACAAAATAATGGAA-GCGCGCCCCCGGGAACGCGCCTTCACG
196 TGATAACATATTCTCTGAAAAAATAATGGAAGGCACGCCCCCAAGAACGCACCTTCACG
* * *
7457325 GTCCCCTAAGGAATAATAGGTATTGAGATGAATAGTTCCCAGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
* * * *
7457390 CAATGATAACATATTCTCTGACAAAATAATGGAAGGTGCGCCCCCGAGAACGCGGCTTCACGGTG
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACGGTC
* *
7457455 CCCTAAGGAATAATAGGTATTGACATGAATAGTTCCTGGGGGACATAAGTGACATAATAGGGCAA
131 CCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTAACATAATAGGGCAA
* *
7457520 TGATAATATATTCTCTGAAAAAATAATGGAAGGCACGCCCCCAAGAACGCACCTTCATG
196 TGATAACATATTCTCTGAAAAAATAATGGAAGGCACGCCCCCAAGAACGCACCTTCACG
*
7457579 GTCCCCTAAAAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
1 GTCCCCTAAGAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
7457644 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCA
66 CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCA
7457704 AATGAATAGT
Statistics
Matches: 353, Mismatches: 25, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
253 213 0.60
254 140 0.40
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (254 bp):
GTCCCCTAAGAAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTGACATAATAGGG
CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCACGGTC
CCCTAAGGAATAATAGGTATTGACATGAATAGTTCCCGGGGGACATAAGTAACATAATAGGGCAA
TGATAACATATTCTCTGAAAAAATAATGGAAGGCACGCCCCCAAGAACGCACCTTCACG
Found at i:7462537 original size:21 final size:21
Alignment explanation
Indices: 7462495--7462547 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7462485 ATTCTGACTA
7462495 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
7462516 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
* *
7462537 TAGCAATGCGA
1 TCGCATTGCGA
7462548 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:7462609 original size:20 final size:20
Alignment explanation
Indices: 7462539--7462610 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
7462529 TTCCTAATTA
*
7462539 GCAATGCGAATACGTAAATC
1 GCAATGCGATTACGTAAATC
* * *
7462559 GTAACGCGAATTTA-GAAAATC
1 GCAATGCG-A-TTACGTAAATC
7462580 GCAATGCGATTACGTAAATC
1 GCAATGCGATTACGTAAATC
7462600 GCAATGCGATT
1 GCAATGCGATT
7462611 TACATAGCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.07
20 24 0.57
21 13 0.31
22 2 0.05
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (20 bp):
GCAATGCGATTACGTAAATC
Found at i:7462812 original size:22 final size:22
Alignment explanation
Indices: 7462787--7462848 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 22
7462777 GGCGACATCC
7462787 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
*
7462809 GTCCCCA----CGACGATATCA
1 GTCCCCATCTCCGACGAAATCA
* *
7462827 GTCTCCATCTCCGGCGAAATCA
1 GTCCCCATCTCCGACGAAATCA
7462849 TTCACGGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 16 0.50
22 16 0.50
ACGTcount: A:0.26, C:0.39, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:7463266 original size:20 final size:20
Alignment explanation
Indices: 7463218--7463267 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7463208 CGATTATTGC
**
7463218 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
7463238 GTTGCGATTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
*
7463258 GTTGTGATTT
1 GTTGCGATTT
7463268 AAAGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:7463275 original size:20 final size:20
Alignment explanation
Indices: 7463232--7463275 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7463222 CGATAGTCAT
** *
7463232 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTAAAG
*
7463252 TTTCGTGTTGTGATTTAAAG
1 TTTCGTGTTGCGATTTAAAG
7463272 TTTC
1 TTTC
7463276 AGAAACTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.11, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTAAAG
Found at i:7465184 original size:20 final size:20
Alignment explanation
Indices: 7465159--7465242 Score: 99
Period size: 20 Copynumber: 4.5 Consensus size: 20
7465149 AGAATAGTTT
7465159 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
7465179 ACTATCACAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
*
7465195 A--ATCGCAATGCGAAAATA
1 ACTATCGCAATGCGAAAATG
7465213 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
7465233 ACTATCGCAA
1 ACTATCGCAA
7465243 CGAAAGAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
14 6 0.12
16 4 0.08
17 4 0.08
18 3 0.06
20 35 0.67
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:7465244 original size:54 final size:53
Alignment explanation
Indices: 7465159--7465264 Score: 176
Period size: 54 Copynumber: 2.0 Consensus size: 53
7465149 AGAATAGTTT
* *
7465159 ACTATCGCAATGCGAAAATGACTATCACAACGAGAGAATCGCAATGCGAAAATA
1 ACTATCGCAATGCGAAAATGACTATCACAACGAAAGAATCGAAATGC-AAAATA
*
7465213 ACTATCGCAATGCGAAAATGACTATCGCAACGAAAGAATCGAAATGCAAAAT
1 ACTATCGCAATGCGAAAATGACTATCACAACGAAAGAATCGAAATGCAAAAT
7465265 GAAAATCGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.10
54 44 0.90
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (53 bp):
ACTATCGCAATGCGAAAATGACTATCACAACGAAAGAATCGAAATGCAAAATA
Found at i:7465314 original size:20 final size:20
Alignment explanation
Indices: 7465289--7465335 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7465279 GATTCTCTCG
7465289 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
7465309 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
7465329 TTGCGAT
1 TTGCGAT
7465336 TTTGTTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:7465366 original size:33 final size:34
Alignment explanation
Indices: 7465309--7465405 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
7465299 CAAATTCGCA
* *
7465309 TTGCGATAGTCATTTTCGCGTTGCGATTTTGTTG
1 TTGCGATAGTCATTTTCGCGTTGCGATTTTCTCG
** * *
7465343 TTGCGATTTTCA-TTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTTCGCGTTGCGATTTTCTCG
7465376 TTGCGATAGTCATTTTCGCGTTGCGATTTT
1 TTGCGATAGTCATTTTCGCGTTGCGATTTT
7465406 AAGTTTCAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 27 0.52
34 25 0.48
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (34 bp):
TTGCGATAGTCATTTTCGCGTTGCGATTTTCTCG
Found at i:7467393 original size:13 final size:13
Alignment explanation
Indices: 7467346--7467398 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
7467336 TTGATTGTTT
7467346 AATTGATTTGTAA
1 AATTGATTTGTAA
*
7467359 AAGATGATTTGTAA
1 AA-TTGATTTGTAA
**
7467373 ATATTGATTTGTTT
1 A-ATTGATTTGTAA
*
7467387 AATTGATGTGTA
1 AATTGATTTGTA
7467399 CATAATATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
13 11 0.34
14 20 0.62
15 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (13 bp):
AATTGATTTGTAA
Found at i:7467574 original size:34 final size:33
Alignment explanation
Indices: 7467486--7467581 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 33
7467476 AAAACAGACT
* **
7467486 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
* *
7467520 ATCGCAATTCGAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
7467553 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
7467582 CAAAATTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 30 0.55
34 25 0.45
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:7467633 original size:33 final size:34
Alignment explanation
Indices: 7467587--7467653 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
7467577 CAACGCAAAA
*
7467587 TTTCATTTTCGCATTGCGATTCACTCGTTGCGAT
1 TTTCATTTTCGCATTGCGATTCACTCATTGCGAT
*
7467621 TTTCA-TTTCGCATTGCGATTCTCTCATTGCGAT
1 TTTCATTTTCGCATTGCGATTCACTCATTGCGAT
7467654 AGTATTTCCG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.15, C:0.24, G:0.16, T:0.45
Consensus pattern (34 bp):
TTTCATTTTCGCATTGCGATTCACTCATTGCGAT
Found at i:7467670 original size:33 final size:33
Alignment explanation
Indices: 7467593--7467672 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
7467583 AAAATTTCAT
* **
7467593 TTTCGCATTGCGATTCACTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCACTCATTGCGATAGTCA
*
7467626 TTTCGCATTGCGATTCTCTCATTGCGATAGT-A
1 TTTCGCATTGCGATTCACTCATTGCGATAGTCA
*
7467658 TTTCCGCGTTGCGAT
1 TTT-CGCATTGCGAT
7467673 AGTCAATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
32 4 0.10
33 37 0.90
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (33 bp):
TTTCGCATTGCGATTCACTCATTGCGATAGTCA
Found at i:7467691 original size:20 final size:20
Alignment explanation
Indices: 7467647--7467732 Score: 115
Period size: 20 Copynumber: 4.3 Consensus size: 20
7467637 GATTCTCTCA
7467647 TTGCGATAGT-ATTTCCGCG
1 TTGCGATAGTCATTTCCGCG
*
7467666 TTGCGATAGTCAATTT-CGCA
1 TTGCGATAGTC-ATTTCCGCG
*
7467686 TTGCGATAGTCATTTCCGTG
1 TTGCGATAGTCATTTCCGCG
7467706 TTGCGATAGTCATATT-CGCG
1 TTGCGATAGTCAT-TTCCGCG
7467726 TTGCGAT
1 TTGCGAT
7467733 TTCCGCGTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
19 14 0.24
20 39 0.66
21 6 0.10
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCGCG
Found at i:7467709 original size:40 final size:39
Alignment explanation
Indices: 7467645--7467751 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
7467635 GCGATTCTCT
7467645 CATTGCGATAGTATTTCCGCGTTGCGATAGTCA-ATTTCG
1 CATTGCGATAGTATTTCCGCGTTGCGATAGTCATA-TTCG
*
7467684 CATTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCG
1 CATTGCGATAGT-ATTTCCGCGTTGCGATAGTCATATTCG
*
7467724 CGTTGC----G-ATTTCCGCGTTGCGATAGTCA
1 CATTGCGATAGTATTTCCGCGTTGCGATAGTCA
7467752 AATGAATGTC
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
34 20 0.32
36 1 0.02
39 12 0.19
40 29 0.46
41 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (39 bp):
CATTGCGATAGTATTTCCGCGTTGCGATAGTCATATTCG
Found at i:7470065 original size:24 final size:24
Alignment explanation
Indices: 7470014--7470065 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7470004 ATCTGAGTAT
** *
7470014 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
7470038 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
7470062 TGAC
1 TGAC
7470066 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:7470909 original size:20 final size:20
Alignment explanation
Indices: 7470884--7470930 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7470874 AAATTCAGTA
*
7470884 TTGCGATAGACAGAATCTCG
1 TTGCGATACACAGAATCTCG
* *
7470904 TTGCGATTCACAGATTCTCG
1 TTGCGATACACAGAATCTCG
7470924 TTGCGAT
1 TTGCGAT
7470931 TCACGTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (20 bp):
TTGCGATACACAGAATCTCG
Found at i:7470931 original size:20 final size:20
Alignment explanation
Indices: 7470893--7470934 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7470883 ATTGCGATAG
7470893 ACAGAATCTCGTTGCGATTC
1 ACAGAATCTCGTTGCGATTC
*
7470913 ACAGATTCTCGTTGCGATTC
1 ACAGAATCTCGTTGCGATTC
7470933 AC
1 AC
7470935 GTAATCGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (20 bp):
ACAGAATCTCGTTGCGATTC
Found at i:7470947 original size:20 final size:20
Alignment explanation
Indices: 7470924--7470969 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
7470914 CAGATTCTCG
7470924 TTGCGATTCACGTAATCGCA
1 TTGCGATTCACGTAATCGCA
*
7470944 TTGCGATTTACGTAATCGCA
1 TTGCGATTCACGTAATCGCA
7470964 TTGCGA
1 TTGCGA
7470970 ATTTGGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (20 bp):
TTGCGATTCACGTAATCGCA
Found at i:7470981 original size:21 final size:21
Alignment explanation
Indices: 7470957--7471032 Score: 116
Period size: 21 Copynumber: 3.6 Consensus size: 21
7470947 CGATTTACGT
** *
7470957 AATCGCATTGCGAATTTGGAA
1 AATCGCAACGCGAATTTGGGA
7470978 AATCGCAACGCGAATTTGGGA
1 AATCGCAACGCGAATTTGGGA
7470999 AATCGCAACGCGAATTTGGGA
1 AATCGCAACGCGAATTTGGGA
*
7471020 AATCGCAATGCGA
1 AATCGCAACGCGA
7471033 TAGTCAGAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (21 bp):
AATCGCAACGCGAATTTGGGA
Found at i:7475905 original size:24 final size:24
Alignment explanation
Indices: 7475852--7475913 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
7475842 GAAAAACTTG
* *
7475852 ATAAACGAACTTATAAATAATTCA
1 ATAAATGAACTTATAAACAATTCA
* *
7475876 ACAAATGAGCTTATAAACAA-TCTA
1 ATAAATGAACTTATAAACAATTC-A
*
7475900 ATAAATGAATTTAT
1 ATAAATGAACTTAT
7475914 TCACGAACAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
23 2 0.07
24 28 0.93
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (24 bp):
ATAAATGAACTTATAAACAATTCA
Found at i:7480338 original size:20 final size:20
Alignment explanation
Indices: 7480313--7480358 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
7480303 GTTGTTATGG
7480313 CTGTTAAGGAATGTTGGAAT
1 CTGTTAAGGAATGTTGGAAT
*
7480333 CTGTTAAGGAATGTTGGAGT
1 CTGTTAAGGAATGTTGGAAT
7480353 CTGTTA
1 CTGTTA
7480359 TGAATTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.07, G:0.30, T:0.37
Consensus pattern (20 bp):
CTGTTAAGGAATGTTGGAAT
Found at i:7481320 original size:35 final size:34
Alignment explanation
Indices: 7481272--7481409 Score: 161
Period size: 36 Copynumber: 4.0 Consensus size: 34
7481262 TGAATAAGAA
* **
7481272 GAACGAAATGAAGCATCGGCACTTTCGATTCAAG
1 GAACGAAAGGAAGCATCAACACTTTCGATTCAAG
*
7481306 TGAACGGAAGGAAGCATCAACACTTTCGATTCAAG
1 -GAACGAAAGGAAGCATCAACACTTTCGATTCAAG
* *
7481341 AAGAACGAAAAGAAGCATCAACACTTTTGATTCAAG
1 --GAACGAAAGGAAGCATCAACACTTTCGATTCAAG
* *
7481377 GAACGGAAGAAAGCAT-AAGCACTTTCGATTCAA
1 GAACGAAAGGAAGCATCAA-CACTTTCGATTCAA
7481410 TTGTTCATCT
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
33 2 0.02
34 26 0.29
35 30 0.34
36 31 0.35
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.20
Consensus pattern (34 bp):
GAACGAAAGGAAGCATCAACACTTTCGATTCAAG
Found at i:7481566 original size:20 final size:20
Alignment explanation
Indices: 7481541--7481590 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
7481531 GTTGTTATGG
7481541 CTGTTAATGAATGTTGGAAT
1 CTGTTAATGAATGTTGGAAT
* *
7481561 CTGTTAAGGAATGTTGGAGT
1 CTGTTAATGAATGTTGGAAT
7481581 CTGTT-ATGAA
1 CTGTTAATGAA
7481591 CTTGTTATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (20 bp):
CTGTTAATGAATGTTGGAAT
Found at i:7482544 original size:35 final size:34
Alignment explanation
Indices: 7482500--7482631 Score: 165
Period size: 36 Copynumber: 3.8 Consensus size: 34
7482490 AGAAGAACAA
*
7482500 AAGGAAGCATCGGCACTTTTGATTCAAGTGAACGG
1 AAGGAAGCATCGGCACTTTCGATTCAAG-GAACGG
* *
7482535 AAGGAAGCATCGGCACTTTCGATTCAAGAAGGACGA
1 AAGGAAGCATCGGCACTTTCGATTCAAG--GAACGG
* *
7482571 AAGGAAGCATCGACACTTTTGATTCAAGGAACGG
1 AAGGAAGCATCGGCACTTTCGATTCAAGGAACGG
* * *
7482605 AAGAAAACATCAGCACTTTCGATTCAA
1 AAGGAAGCATCGGCACTTTCGATTCAA
7482632 TTGTTCATCT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
34 26 0.31
35 27 0.33
36 30 0.36
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (34 bp):
AAGGAAGCATCGGCACTTTCGATTCAAGGAACGG
Found at i:7494035 original size:2 final size:2
Alignment explanation
Indices: 7494022--7494053 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7494012 GTATCTCTAA
*
7494022 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7494054 TATTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7494216 original size:16 final size:17
Alignment explanation
Indices: 7494185--7494217 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7494175 TATGAAATCT
*
7494185 TTCAAATTTTATTTTTA
1 TTCAAATTTAATTTTTA
7494202 TTCAAA-TTAATTTTTA
1 TTCAAATTTAATTTTTA
7494218 AAAGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
TTCAAATTTAATTTTTA
Found at i:7494905 original size:31 final size:29
Alignment explanation
Indices: 7494870--7494935 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
7494860 TTAACTTTTA
7494870 ATAATCAGATAACTCAATAAATTAGTGTCCT
1 ATAATCAGA-AACT-AATAAATTAGTGTCCT
* * * *
7494901 ATAATCGGAGAGTTATAAATTAGTGTCCT
1 ATAATCAGAAACTAATAAATTAGTGTCCT
7494930 ATAATC
1 ATAATC
7494936 GGATGACCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 21 0.68
30 2 0.06
31 8 0.26
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (29 bp):
ATAATCAGAAACTAATAAATTAGTGTCCT
Found at i:7496104 original size:26 final size:26
Alignment explanation
Indices: 7496068--7496125 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
7496058 TATCACAGCC
7496068 GTCGTCATCGACGAACAACCACTTCA
1 GTCGTCATCGACGAACAACCACTTCA
7496094 GTCGTCATCGACGAACAACCACTTCA
1 GTCGTCATCGACGAACAACCACTTCA
7496120 GTCGTC
1 GTCGTC
7496126 GTCGCGCACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (26 bp):
GTCGTCATCGACGAACAACCACTTCA
Found at i:7496190 original size:23 final size:25
Alignment explanation
Indices: 7496156--7496216 Score: 83
Period size: 22 Copynumber: 2.6 Consensus size: 25
7496146 CCATTGTCTC
7496156 AATCCCTTAAATTCTTAAAC-TT-A
1 AATCCCTTAAATTCTTAAACATTCA
* *
7496179 AATCCC-TAAAATATTAAACATTCA
1 AATCCCTTAAATTCTTAAACATTCA
7496203 AATCCCTTAAATTC
1 AATCCCTTAAATTC
7496217 CTTTGAACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 11 0.35
23 8 0.26
24 7 0.23
25 5 0.16
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (25 bp):
AATCCCTTAAATTCTTAAACATTCA
Found at i:7499933 original size:24 final size:23
Alignment explanation
Indices: 7499898--7499981 Score: 73
Period size: 26 Copynumber: 3.5 Consensus size: 23
7499888 TAAAATAAAT
7499898 AAAAATATATAAAAAATAAAGAA
1 AAAAATATATAAAAAATAAAGAA
* *
7499921 AAAGAATATATAAATAAAACAAACAA
1 AAA-AATATAT-AA-AAAATAAAGAA
*
7499947 ATAAAATA-AT-AATAATAAAGTAA
1 A-AAAATATATAAAAAATAAAG-AA
7499970 AAATAATATATA
1 AAA-AATATATA
7499982 TATATATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
22 8 0.17
23 11 0.23
24 9 0.19
25 4 0.08
26 14 0.29
27 2 0.04
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (23 bp):
AAAAATATATAAAAAATAAAGAA
Found at i:7499998 original size:49 final size:48
Alignment explanation
Indices: 7499891--7500042 Score: 118
Period size: 49 Copynumber: 3.1 Consensus size: 48
7499881 TAGTAAGTAA
* * * * *
7499891 AATAAATAAAAATATATAAAAAATAAAGAAAAAGAATATATAAATA-AAACA
1 AATAAAT-AAAATACAT--AAAATAAAGAAAAATAATATATATATATATA-T
*
7499942 AACAAATAAAATA-ATAATAATAAAGTAAAAATAATATATATATATATAT
1 AATAAATAAAATACATAA-AATAAAG-AAAAATAATATATATATATATAT
* *
7499991 AATAAATAAAA-ACATAAAA-AATAG-GATAT-ATATATATATATATATT
1 AATAAATAAAATACATAAAATAA-AGAAAAATAATATATATATATATA-T
7500037 AATAAA
1 AATAAA
7500043 ACAGATAATA
Statistics
Matches: 87, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
45 15 0.17
46 10 0.11
47 4 0.05
48 12 0.14
49 32 0.37
50 8 0.09
51 6 0.07
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (48 bp):
AATAAATAAAATACATAAAATAAAGAAAAATAATATATATATATATAT
Found at i:7500495 original size:37 final size:37
Alignment explanation
Indices: 7500445--7500589 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
7500435 TTGTGGATCT
*
7500445 TATTTTTAGGAGTTTGAATCATAGTAGAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
*
7500482 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCC
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
* * *
7500519 TATTTTTAGAAGTTTGAATCCTAATAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
*
7500556 TATTTTTAGGAGTTTGAATCATAGTAAAATTCTA
1 TATTTTTAGGAGTTTGAATCATAGTAAAACTCTA
7500590 ACATTATGTT
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATAGTAAAACTCTATCA
Found at i:7501579 original size:190 final size:190
Alignment explanation
Indices: 7501350--7501717 Score: 655
Period size: 190 Copynumber: 1.9 Consensus size: 190
7501340 AAATCCAAGT
*
7501350 AAGTTGTATTGTTTTGAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGATCTGAAACTGGGAA
1 AAGTTGTATTGTTTTGAGTACAATATCCTCCGCCGTGAAGTTGAAATTGGATCTGAAACTGGGAA
* * * *
7501415 GCCCCTTCGTCGTGAAATTGAGCCTTAAATGGCACGATATCCTCCGTCATGGAGTTGAAATCGTG
66 GCCCATTCGTCGTGAAATTGAGCCTCAAATGGCACAATATCCTCCATCATGGAGTTGAAATCGTG
* *
7501480 GATGTGTGGATACGATATCCTCCGTTGTGGAGTTGAAATCGTTGATGGAACCTTGATGTG
131 GATGTATGGATACGATATCCTCCGTTGTGGAGTTGAAATCGTGGATGGAACCTTGATGTG
7501540 AAGTTGTATTGTTTTGAGTACAATATCCTCCGCCGTGAAGTTGAAATTGGATCTGAAACTGGGAA
1 AAGTTGTATTGTTTTGAGTACAATATCCTCCGCCGTGAAGTTGAAATTGGATCTGAAACTGGGAA
*
7501605 GCCCATTCGTCGTGAAATTGAGCCTCAAATGGCACAATATCCTCCATCGTGGAGTTGAAATCGTG
66 GCCCATTCGTCGTGAAATTGAGCCTCAAATGGCACAATATCCTCCATCATGGAGTTGAAATCGTG
*
7501670 GATGTATGGATACGATATCCTCCGTTGTGGAGTTGAAATTGTGGATGG
131 GATGTATGGATACGATATCCTCCGTTGTGGAGTTGAAATCGTGGATGG
7501718 CCCCTTCGTC
Statistics
Matches: 169, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
190 169 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (190 bp):
AAGTTGTATTGTTTTGAGTACAATATCCTCCGCCGTGAAGTTGAAATTGGATCTGAAACTGGGAA
GCCCATTCGTCGTGAAATTGAGCCTCAAATGGCACAATATCCTCCATCATGGAGTTGAAATCGTG
GATGTATGGATACGATATCCTCCGTTGTGGAGTTGAAATCGTGGATGGAACCTTGATGTG
Found at i:7502116 original size:110 final size:110
Alignment explanation
Indices: 7501920--7502314 Score: 562
Period size: 110 Copynumber: 3.7 Consensus size: 110
7501910 TTGTCTCACT
* * **
7501920 TCGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTCATTTGT
1 TCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
*
7501985 TGACAGTCAGTCGC-CCATTCGCTGTGAAGTTGAACTTGTGTTGTC
66 TGACAGTCAGTCGCTCC-TTCGCTGTGAAGTTGAGCTTGTGTTGTC
* *
7502030 TCGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
1 TCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
*
7502095 TGACAGTCAGTCGCTCCTTCGCTGTGAAGTTGAGTTTGTGTTGTC
66 TGACAGTCAGTCGCTCCTTCGCTGTGAAGTTGAGCTTGTGTTGTC
* *
7502140 TCGAGTCCACTATCATTCACTGTGAAGTTGAAATTGA--C----T----CTGAAAAGTTGTTTGT
1 TCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
* *
7502195 TGATAGTCAGTC-ATCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTC
66 TGACAGTCAGTCGCT-CCTTCGCTGTGAAGTTGAGCTTGTGTTGTC
* *
7502240 TCGAGTCCAATATCATTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTAGTTTGT
1 TCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
7502305 TGACAGTCAG
66 TGACAGTCAG
7502315 CTTGTCTCGA
Statistics
Matches: 255, Mismatches: 18, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
99 1 0.00
100 90 0.35
102 1 0.00
104 1 0.00
106 1 0.00
108 1 0.00
110 158 0.62
111 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (110 bp):
TCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGT
TGACAGTCAGTCGCTCCTTCGCTGTGAAGTTGAGCTTGTGTTGTC
Found at i:7502196 original size:100 final size:100
Alignment explanation
Indices: 7502079--7502283 Score: 340
Period size: 100 Copynumber: 2.0 Consensus size: 100
7502069 CTGAATGAAA
* *
7502079 CTGAAAAGTTGTTTGTTGACAGTCAGTC-GCTCCTTCGCTGTGAAGTTGAGTTTGTGTTGTCTCG
1 CTGAAAAGTTGTTTGTTGACAGTCAGTCATC-CCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCG
*
7502143 AGTCCACTATCATTCACTGTGAAGTTGAAATTGACT
65 AGTCCAATATCATTCACTGTGAAGTTGAAATTGACT
*
7502179 CTGAAAAGTTGTTTGTTGATAGTCAGTCATCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGA
1 CTGAAAAGTTGTTTGTTGACAGTCAGTCATCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGA
**
7502244 GTCCAATATCATTCGTTGTGAAGTTGAAATTGACT
66 GTCCAATATCATTCACTGTGAAGTTGAAATTGACT
7502279 CTGAA
1 CTGAA
7502284 TGAAACTGAA
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 97 0.99
101 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (100 bp):
CTGAAAAGTTGTTTGTTGACAGTCAGTCATCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGA
GTCCAATATCATTCACTGTGAAGTTGAAATTGACT
Found at i:7507106 original size:31 final size:32
Alignment explanation
Indices: 7507063--7507123 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
7507053 ATGTTAGATA
*
7507063 AAAATGTAAGAAATAAATAAA-TAAATAAAATT
1 AAAATGTAAGAAA-AAACAAATTAAATAAAATT
7507095 AAAATG-AAGAAAAAACAAATTAAATAAAA
1 AAAATGTAAGAAAAAACAAATTAAATAAAA
7507124 GATAAGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.22
31 15 0.56
32 6 0.22
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (32 bp):
AAAATGTAAGAAAAAACAAATTAAATAAAATT
Found at i:7507167 original size:4 final size:4
Alignment explanation
Indices: 7507160--7507324 Score: 69
Period size: 4 Copynumber: 41.5 Consensus size: 4
7507150 ATAGTAAGTA
* * * *
7507160 AAAT AAAT AAA- AAAT ATAT AAA- AAAT AAAG AAAA ATAAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT
* *
7507207 AAAAT AAAT AAAT AAA- ATAAT -AAT AAA- AAAGT AAAA ATAAT ATAT
1 -AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAA-T AAAT A-AAT AAAT
* * * * * *
7507252 ATAT ATAAT AAAT AAA- AACAT AAAA AAAT -AGT ATAT ATAT ATAT AAAT
1 AAAT A-AAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* *
7507300 TAAT AAAAC AAAT -AAT AAA- AAAT AA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AA
7507325 CATATATATA
Statistics
Matches: 123, Mismatches: 21, Indels: 34
0.69 0.12 0.19
Matches are distributed among these distances:
3 23 0.19
4 80 0.65
5 20 0.16
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:7507246 original size:33 final size:34
Alignment explanation
Indices: 7507207--7507299 Score: 86
Period size: 34 Copynumber: 2.7 Consensus size: 34
7507197 ATATATAAAT
7507207 AAAATAAATAAATA-AAATAAT-AATAAAAA-AGTA
1 AAAAT-AATAAATATAAATAATAAATAAAAACA-TA
* *
7507240 AAAATAATATATATATATAATAAATAAAAACATA
1 AAAATAATAAATATAAATAATAAATAAAAACATA
* *
7507274 AAAA-AATAGTATATATATATATAAAT
1 AAAATAATA-AATATAAATA-ATAAAT
7507300 TAATAAAACA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
32 7 0.13
33 15 0.28
34 24 0.45
35 7 0.13
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (34 bp):
AAAATAATAAATATAAATAATAAATAAAAACATA
Found at i:7507262 original size:49 final size:49
Alignment explanation
Indices: 7507158--7507269 Score: 158
Period size: 49 Copynumber: 2.3 Consensus size: 49
7507148 AAATAGTAAG
7507158 TAAAATAAAT-AAAAAATATATAAAAAATAAAGAAAAATAATATATAAA
1 TAAAATAAATAAAAAAATATATAAAAAATAAAGAAAAATAATATATAAA
* *
7507206 TAAAATAAATAAATAAAATA-ATAATAAA-AAAGTAAAAATAATATATATA
1 TAAAATAAATAAA-AAAATATATAAAAAATAAAG-AAAAATAATATATAAA
*
7507255 TATAATAAATAAAAA
1 TAAAATAAATAAAAA
7507270 CATAAAAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
48 16 0.28
49 36 0.62
50 6 0.10
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (49 bp):
TAAAATAAATAAAAAAATATATAAAAAATAAAGAAAAATAATATATAAA
Found at i:7507265 original size:53 final size:52
Alignment explanation
Indices: 7507160--7507278 Score: 156
Period size: 52 Copynumber: 2.3 Consensus size: 52
7507150 ATAGTAAGTA
7507160 AAATAAATAAAAAATATATAAAAAATAAAGAAAAATAATATATAAATAAAAT
1 AAATAAATAAAAAATATATAAAAAATAAAGAAAAATAATATATAAATAAAAT
*
7507212 AAATAAATAAAATAATA-ATAAAAAAGTAAA-AATAATATATATATATAAT-AAAT
1 AAATAAATAAAA-AATATATAAAAAA-TAAAGAAAAATA-ATATATA-AATAAAAT
7507265 AAA-AACATAAAAAA
1 AAATAA-ATAAAAAA
7507279 ATAGTATATA
Statistics
Matches: 61, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
52 30 0.49
53 28 0.46
54 3 0.05
ACGTcount: A:0.74, C:0.01, G:0.02, T:0.24
Consensus pattern (52 bp):
AAATAAATAAAAAATATATAAAAAATAAAGAAAAATAATATATAAATAAAAT
Found at i:7507276 original size:34 final size:34
Alignment explanation
Indices: 7507223--7507299 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
7507213 AATAAATAAA
7507223 ATAAT-AATAAAAAAGTAAAAATAATA-TATATAT
1 ATAATAAATAAAAAAGTAAAAA-AATAGTATATAT
7507256 ATAATAAATAAAAACA-TAAAAAAATAGTATATAT
1 ATAATAAATAAAAA-AGTAAAAAAATAGTATATAT
7507290 ATATATAAAT
1 ATA-ATAAAT
7507300 TAATAAAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
33 9 0.22
34 24 0.60
35 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (34 bp):
ATAATAAATAAAAAAGTAAAAAAATAGTATATAT
Found at i:7507276 original size:42 final size:40
Alignment explanation
Indices: 7507221--7507336 Score: 100
Period size: 38 Copynumber: 3.0 Consensus size: 40
7507211 TAAATAAATA
*
7507221 AAATAATA-ATAAAAAAGTAAAAATAATATATATATATAAT
1 AAATAAAACATAAAAAA-TAAAAATAATATATATATATAAT
* *
7507261 AAATAAAAACAT-AAAAA-AATAGT-ATATATATATATAAAT
1 AAAT-AAAACATAAAAAATAAAAATAATATATATATAT-AAT
* * *
7507300 TAATAAAAC--AAATAATAAAAAATAACATATATATATA
1 AAATAAAACATAAAAAAT-AAAAATAATATATATATATA
7507337 TATGTATGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
37 4 0.07
38 17 0.28
39 15 0.25
40 15 0.25
41 8 0.13
42 2 0.03
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (40 bp):
AAATAAAACATAAAAAATAAAAATAATATATATATATAAT
Found at i:7507337 original size:42 final size:40
Alignment explanation
Indices: 7507171--7507338 Score: 160
Period size: 42 Copynumber: 4.0 Consensus size: 40
7507161 AATAAATAAA
* * *
7507171 AAATATAT-AAAAAATAAAGAAAAATAATATATAAATAAAAT
1 AAATAAATAAAAAAATAAA-AAAAATAATATATATAT-ATAT
* *
7507212 AAATAAATAAAATAATAATAAAAAAGTAAAAATAATATATATAT
1 AAATAAATAAAAAAATAA-AAAAAA-T-AATAT-ATATATATAT
* *
7507256 ATAATAAATAAAAACAT-AAAAAAATAGTATATATATATAT
1 A-AATAAATAAAAAAATAAAAAAAATAATATATATATATAT
* *
7507296 AAATTAATAAAACAAATAATAAAAAATAACATATATATATAT
1 AAATAAATAAAA-AAATAA-AAAAAATAATATATATATATAT
7507338 A
1 A
7507339 TGTATGTAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
39 10 0.10
40 14 0.13
41 11 0.10
42 35 0.33
43 8 0.08
44 9 0.09
45 18 0.17
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (40 bp):
AAATAAATAAAAAAATAAAAAAAATAATATATATATATAT
Found at i:7507363 original size:42 final size:42
Alignment explanation
Indices: 7507246--7507365 Score: 115
Period size: 44 Copynumber: 2.9 Consensus size: 42
7507236 AGTAAAAATA
* *
7507246 ATATATATATAT-AA-TAA-ATAAAAACATAAAAA-AATAGT
1 ATATATATATATAAATTAATATAAAAAAATAAAAATAACAGT
*
7507284 ATATATATATATAAATTAATAAAACAAATAATAAAAAATAACA-T
1 ATATATATATATAAATTAATATAA-AAA-AAT-AAAAATAACAGT
** *
7507328 ATATATATATATGTATGTAATCTAAAAAAATAAAAATA
1 ATATATATATATAAAT-TAATATAAAAAAATAAAAATA
7507366 TATACTAAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
38 12 0.18
39 2 0.03
40 3 0.04
41 3 0.04
42 10 0.15
43 5 0.07
44 23 0.34
45 9 0.13
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (42 bp):
ATATATATATATAAATTAATATAAAAAAATAAAAATAACAGT
Found at i:7507387 original size:24 final size:23
Alignment explanation
Indices: 7507360--7507405 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
7507350 TAAAAAAATA
7507360 AAAATATATACTAAA-GTAAAAAAG
1 AAAATATATA--AAATGTAAAAAAG
*
7507384 AAAATGTATAAAATGTAAAAAA
1 AAAATATATAAAATGTAAAAAA
7507406 ATATTATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 3 0.15
23 8 0.40
24 9 0.45
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (23 bp):
AAAATATATAAAATGTAAAAAAG
Found at i:7510906 original size:6 final size:6
Alignment explanation
Indices: 7510895--7510927 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
7510885 CTTTGAAGAC
7510895 GCAATG GCAATG GCAATG GCAATG GCAAATG GC
1 GCAATG GCAATG GCAATG GCAATG GC-AATG GC
7510928 GACTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.15
Consensus pattern (6 bp):
GCAATG
Found at i:7513941 original size:60 final size:60
Alignment explanation
Indices: 7513818--7513930 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
7513808 TCACGTGATA
* * * *
7513818 ATTTTATAACTTTTCATAGTTAAAGGACTCAACAAAATCATTGTCTATAGTTGAGAGACC
1 ATTTTGTAACTTTTAATAGTTAAAGGACTCAACAAAATAATTGACTATAGTTGAGAGACC
*
7513878 ATTTTGTAACTTTTAATAG-TATAAGGACTCAATAAAATAATAT-ACTATAGTTG
1 ATTTTGTAACTTTTAATAGTTA-AAGGACTCAACAAAATAAT-TGACTATAGTTG
7513931 TGGAACCATT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.04
60 43 0.93
61 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (60 bp):
ATTTTGTAACTTTTAATAGTTAAAGGACTCAACAAAATAATTGACTATAGTTGAGAGACC
Found at i:7515209 original size:17 final size:18
Alignment explanation
Indices: 7515176--7515209 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7515166 CCGCTATTAG
7515176 TGAACCGGTCAGAACCGT
1 TGAACCGGTCAGAACCGT
*
7515194 TGAACC-GTCCGAACCG
1 TGAACCGGTCAGAACCG
7515210 GACCGGCTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.15
Consensus pattern (18 bp):
TGAACCGGTCAGAACCGT
Found at i:7523005 original size:59 final size:60
Alignment explanation
Indices: 7522911--7523023 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 60
7522901 TTAAGCACCA
* *
7522911 CAAAAAACACTTGCGGCGATATGACAAATGCCGCAAAAAGTGTA-GGGAAAATAGCTTCG
1 CAAAAAACACTTGCGGCGATATGACAAATGACGCAAAAAGCGTAGGGGAAAATAGCTTCG
7522970 CAAAAAACACTTGCGGCGATATGACAAATGACGCAAAAAGCGTAGGGGAAAATA
1 CAAAAAACACTTGCGGCGATATGACAAATGACGCAAAAAGCGTAGGGGAAAATA
7523024 ACGCCACTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
59 42 0.82
60 9 0.18
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.15
Consensus pattern (60 bp):
CAAAAAACACTTGCGGCGATATGACAAATGACGCAAAAAGCGTAGGGGAAAATAGCTTCG
Found at i:7523173 original size:43 final size:43
Alignment explanation
Indices: 7523062--7523178 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
7523052 ACAAAAAATG
** * * *
7523062 CCGCAATAGGTAATGAGATATAGCGACATTTGTCCCACAAACA
1 CCGCAATAGGTGTTGAGATTTAGCGGCGTTTGTCCCACAAACA
*
7523105 CCGCAATAGGTGTTGAGATTTAGCGGTGTTTGTCCCACAAACGA
1 CCGCAATAGGTGTTGAGATTTAGCGGCGTTTGTCCCACAAAC-A
* * *
7523149 -CGTAATTGGTTTTGAGATTTAGCGGCGTTT
1 CCGCAATAGGTGTTGAGATTTAGCGGCGTTT
7523179 TTATAAATGC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 62 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
CCGCAATAGGTGTTGAGATTTAGCGGCGTTTGTCCCACAAACA
Found at i:7523296 original size:44 final size:43
Alignment explanation
Indices: 7523211--7523339 Score: 145
Period size: 44 Copynumber: 3.0 Consensus size: 43
7523201 AGATATTTCA
* * * *
7523211 CGGCATTTTTCGGATACAAACGCCGCCAAAGGTCTGGTATATAG
1 CGGCATTTTTCGGATATAAACGTCG-CAAAAGTCTGATATATAG
* * *
7523255 CGGCGTTTGTCGGATATAAACGTCGCTAAAAGTGTGATATATAG
1 CGGCATTTTTCGGATATAAACGTCGC-AAAAGTCTGATATATAG
*
7523299 CGGCATTTTTC--ATATAAACGTCGCAAAATGTCTGGTATATA
1 CGGCATTTTTCGGATATAAACGTCGCAAAA-GTCTGATATATA
7523340 ACTGCGTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 23 0.32
43 1 0.01
44 44 0.61
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
CGGCATTTTTCGGATATAAACGTCGCAAAAGTCTGATATATAG
Found at i:7523382 original size:86 final size:87
Alignment explanation
Indices: 7523211--7523404 Score: 198
Period size: 86 Copynumber: 2.2 Consensus size: 87
7523201 AGATATTTCA
* * *
7523211 CGGCATTTTTCGGATACAAACGCCGCCAAAGGTCTGGTATATAGCGGCGTTTGTCGGATATAAAC
1 CGGCATTTTTC-GATACAAACGCCGCAAAAGGTCTGGTATATAACGGCGTTTGTAGGATATAAAC
* *
7523276 GTCGCTAAAAGTGTGATATATAG
65 GCCGCTAAAAGTATGATATATAG
* * * *
7523299 CGGCATTTTTC-ATATAAACGTCGCAAAATGTCTGGTATATAACTGCGTTT-TAAGGATACT-AA
1 CGGCATTTTTCGATACAAACGCCGCAAAAGGTCTGGTATATAACGGCGTTTGT-AGGATA-TAAA
*
7523361 CGCCGC-AAAAGGTATGGTATATAG
64 CGCCGCTAAAA-GTATGATATATAG
* * * *
7523385 CAGCGTTTTTTGTTACAAAC
1 CGGCATTTTTCGATACAAAC
7523405 ACCGGTATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
85 5 0.06
86 64 0.74
87 7 0.08
88 11 0.13
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (87 bp):
CGGCATTTTTCGATACAAACGCCGCAAAAGGTCTGGTATATAACGGCGTTTGTAGGATATAAACG
CCGCTAAAAGTATGATATATAG
Done.