Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 37
Found at i:7525292 original size:17 final size:17
Alignment explanation
Indices: 7525270--7525314 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
7525260 TCGGCATGAT
7525270 ATCTGTAATAAACAAAC
1 ATCTGTAATAAACAAAC
7525287 ATCTGTAATAAACAAAC
1 ATCTGTAATAAACAAAC
*
7525304 ATTTGTAATAA
1 ATCTGTAATAA
7525315 GAAAATGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (17 bp):
ATCTGTAATAAACAAAC
Found at i:7530402 original size:14 final size:14
Alignment explanation
Indices: 7530383--7530409 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7530373 ATTATGAATA
7530383 ACAGGAATATGAGG
1 ACAGGAATATGAGG
7530397 ACAGGAATATGAG
1 ACAGGAATATGAG
7530410 ACATGTGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.33, T:0.15
Consensus pattern (14 bp):
ACAGGAATATGAGG
Found at i:7530604 original size:18 final size:18
Alignment explanation
Indices: 7530581--7530616 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7530571 AGGGATTAAC
*
7530581 AGTGGTCCTTCGGGACAT
1 AGTGGTCATTCGGGACAT
*
7530599 AGTGGTCATTTGGGACAT
1 AGTGGTCATTCGGGACAT
7530617 TTCATAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.31
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:7533204 original size:82 final size:81
Alignment explanation
Indices: 7533028--7533271 Score: 262
Period size: 82 Copynumber: 3.0 Consensus size: 81
7533018 TTTGTAAACC
* * * *
7533028 AAATGCCTCTATAGTGCTACTCTATAGCGGCGTTTACTAAAAAACTGTCACTACTGTCCAAGTCT
1 AAATGCCTCTATAGTTCTACTCTATCGCGGCGTTTACTAAAAAA-TGCCACTACTATCCAAGTCT
*
7533093 ATATT--GGCGTTTGTCTA
65 -T-TTGCGGCGTTTGTATA
* * * *
7533110 AAACCGCATCTATAGTTCTACTCTATCGCGGTGTTTACTAAAAAATGCCACTACTATCCAAATCT
1 AAA-TGCCTCTATAGTTCTACTCTATCGCGGCGTTTACTAAAAAATGCCACTACTATCCAAGTCT
7533175 TTTGCGGCGTTTGTATGA
65 TTTGCGGCGTTTGTAT-A
* ** ** *
7533193 AAATGCCTCTATAGTTATACTCTATCATGGCGTTTAC-AGAAAAATGCCAC-AAAATTCCTAGTC
1 AAATGCCTCTATAGTTCTACTCTATCGCGGCGTTTACTA-AAAAATGCCACTACTA-TCCAAGTC
7533256 TTTTGCGGCGTTTGTA
64 TTTTGCGGCGTTTGTA
7533272 AACAAACGCC
Statistics
Matches: 137, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
80 2 0.01
81 4 0.03
82 91 0.66
83 40 0.29
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (81 bp):
AAATGCCTCTATAGTTCTACTCTATCGCGGCGTTTACTAAAAAATGCCACTACTATCCAAGTCTT
TTGCGGCGTTTGTATA
Found at i:7533353 original size:22 final size:22
Alignment explanation
Indices: 7533313--7533356 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7533303 TTCAACTATT
*
7533313 TTGCGGCGTTTTTTGAAAAACA
1 TTGCGGCGTTTTATGAAAAACA
7533335 TTGCGGCGTTTGTAT-AAAAACA
1 TTGCGGCGTTT-TATGAAAAACA
7533357 CCGCTAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (22 bp):
TTGCGGCGTTTTATGAAAAACA
Found at i:7534838 original size:22 final size:22
Alignment explanation
Indices: 7534808--7534856 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7534798 AACGTTTTCA
* *
7534808 AAAGTTATTATTTTCCTATTCG
1 AAAGCTATTATTTTCATATTCG
*
7534830 AAAGCTATTATTTTTATATTCG
1 AAAGCTATTATTTTCATATTCG
7534852 AAAGC
1 AAAGC
7534857 AGTAAAACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (22 bp):
AAAGCTATTATTTTCATATTCG
Found at i:7540023 original size:3 final size:3
Alignment explanation
Indices: 7540015--7540057 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7540005 ATGGTCAAGG
7540015 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7540058 ATCTGCTAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7543807 original size:36 final size:35
Alignment explanation
Indices: 7543692--7543945 Score: 256
Period size: 36 Copynumber: 6.9 Consensus size: 35
7543682 ATATGTATAT
* * *
7543692 TATAGTTTTAAAATATTTTTAAAACCTATATATAATA
1 TATAGTTTTTAAATATTTTGAAAA--TATATATATTA
* *
7543729 TATAGTTTTGAAAACATGTTTGAAAATATTTATATATTA
1 TATAGTTTT-TAAATAT-TTTGAAAATA--TATATATTA
* *
7543768 TATAGTTTTTAAAGTATTTTGAAAATAAATATAATA
1 TATAGTTTTTAAA-TATTTTGAAAATATATATATTA
* *
7543804 TATAGTTTTTACATATTTTTGAAAATATATGTATTA
1 TATAGTTTTTAAATA-TTTTGAAAATATATATATTA
* *
7543840 TATAGTTTTTAAAGTATTTTGAAAATAAATATACTA
1 TATAGTTTTTAAA-TATTTTGAAAATATATATATTA
* * * *
7543876 TATAATTTTTAAAACTTTTTTTTAAAAAATATATATTA
1 TATAGTTTTT-AAA--TATTTTGAAAATATATATATTA
*
7543914 TATAGTTTTTAAACATTTTGAAAATATATATA
1 TATAGTTTTTAAATATTTTGAAAATATATATA
7543946 GTTTTTAAAA
Statistics
Matches: 181, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
35 17 0.09
36 74 0.41
37 19 0.10
38 45 0.25
39 26 0.14
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (35 bp):
TATAGTTTTTAAATATTTTGAAAATATATATATTA
Found at i:7543857 original size:72 final size:72
Alignment explanation
Indices: 7543692--7544130 Score: 304
Period size: 72 Copynumber: 6.1 Consensus size: 72
7543682 ATATGTATAT
* * * * * *
7543692 TATAG-TTTTAAAATATTTTTAAAACCTATATATAATATATAGTTTTGAAAACATGTTTGAAAAT
1 TATAGTTTTTAAAGTATTTTGAAAA--TAAATATAATATATAGTTTT-TAAATATTTTTGAAAAT
7543756 ATTTATATATTA
63 A--TATATATTA
*
7543768 TATAGTTTTTAAAGTATTTTGAAAATAAATATAATATATAGTTTTTACATATTTTTGAAAATATA
1 TATAGTTTTTAAAGTATTTTGAAAATAAATATAATATATAGTTTTTAAATATTTTTGAAAATATA
*
7543833 TGTATTA
66 TATATTA
* * * * *
7543840 TATAGTTTTTAAAGTATTTTGAAAATAAATATACTATATAATTTTTAAAACTTTTTTTTAAAAAA
1 TATAGTTTTTAAAGTATTTTGAAAATAAATATAATATATAGTTTTT-AAA-TATTTTTGAAAATA
7543905 TATATATTA
64 TATATATTA
* * * ***
7543914 TATAGTTTTTAAA-CATTTTGAAAATATATATAGT-T-T--TTAAAAAATATTTTTTGAAGAACA
1 TATAGTTTTTAAAGTATTTTGAAAATAAATATAATATATAGTTTTTAAATA-TTTTTG-A-AA-A
7543974 TATATATATTA
62 TATATATATTA
* ** * * *
7543985 TATAGTTTTTAAA-TCA-TTTCAAAA-ACTTATAATATATAATTTTAAAAAACATTTTT-AAAA-
1 TATAGTTTTTAAAGT-ATTTTGAAAATAAATATAATATATAGTTTT--TAAATATTTTTGAAAAT
*
7544045 A-CTATA-TA
63 ATATATATTA
** * * * * *
7544053 -AT--TTTGGAAA-TGTTTTCAAAAAAACATATAATATATAATTTTAAAATATTTTT-AAAA-AT
1 TATAGTTTTTAAAGTATTTTGAAAATAA-ATATAATATATAGTTTTTAAATATTTTTGAAAATAT
7544112 ATATATTA
65 ATATATTA
7544120 TATAGATTTTT
1 TATAG-TTTTT
7544131 GGAAAATGTT
Statistics
Matches: 298, Mismatches: 42, Indels: 51
0.76 0.11 0.13
Matches are distributed among these distances:
65 30 0.10
66 5 0.02
67 21 0.07
68 12 0.04
69 7 0.02
70 9 0.03
71 37 0.12
72 57 0.19
73 21 0.07
74 48 0.16
75 24 0.08
76 10 0.03
77 17 0.06
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.46
Consensus pattern (72 bp):
TATAGTTTTTAAAGTATTTTGAAAATAAATATAATATATAGTTTTTAAATATTTTTGAAAATATA
TATATTA
Found at i:7544021 original size:34 final size:37
Alignment explanation
Indices: 7543976--7544054 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 37
7543966 GAAGAACATA
* * * *
7543976 TATATATTATATAGTTTT-TAAATCA-TTTCAAAAAC
1 TATATAATATATAATTTTAAAAAACATTTTCAAAAAC
*
7544011 T-TATAATATATAATTTTAAAAAACATTTTTAAAAAC
1 TATATAATATATAATTTTAAAAAACATTTTCAAAAAC
7544047 TATATAAT
1 TATATAAT
7544055 TTTGGAAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
34 14 0.39
35 6 0.17
36 10 0.28
37 6 0.17
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATATATAATTTTAAAAAACATTTTCAAAAAC
Found at i:7544052 original size:64 final size:63
Alignment explanation
Indices: 7543995--7544116 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 63
7543985 TATAGTTTTT
*
7543995 AAATCATTTC-AAAAACTTATAATATATAATTTTAAAAAACATTTTTAAAAACTATATAATTTTG
1 AAATCATTTCAAAAAACATATAATATATAATTTT--AAAACATTTTTAAAAA-TATATAATTTTG
7544059 G
63 G
** *
7544060 AAATGTTTTCAAAAAAACATATAATATATAATTTTAAAATATTTTTAAAAATATATA
1 AAATCATTTC-AAAAAACATATAATATATAATTTTAAAACATTTTTAAAAATATATA
7544117 TTATATAGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
64 6 0.12
65 23 0.45
67 22 0.43
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (63 bp):
AAATCATTTCAAAAAACATATAATATATAATTTTAAAACATTTTTAAAAATATATAATTTTGG
Found at i:7544088 original size:37 final size:37
Alignment explanation
Indices: 7544047--7544142 Score: 104
Period size: 36 Copynumber: 2.6 Consensus size: 37
7544037 TTTTAAAAAC
7544047 TATATAATTTTGGAAATGTTTTCAAAAAAACATATAA
1 TATATAATTTTGGAAATGTTTTCAAAAAAACATATAA
* * * * * *
7544084 TATATAATTTT-AAAATATTTTTAAAAATATATATTA
1 TATATAATTTTGGAAATGTTTTCAAAAAAACATATAA
* *
7544120 TATAGATTTTTGGAAAATGTTTT
1 TATATAATTTTGG-AAATGTTTT
7544143 TTTATTATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
36 28 0.60
37 11 0.23
38 8 0.17
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (37 bp):
TATATAATTTTGGAAATGTTTTCAAAAAAACATATAA
Found at i:7544159 original size:11 final size:11
Alignment explanation
Indices: 7544143--7544213 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 11
7544133 AAAATGTTTT
7544143 TTTATTATTTA
1 TTTATTATTTA
7544154 TTTATTTATTTA
1 TTTA-TTATTTA
*
7544166 CCTTTTGTTATTTA
1 ---TTTATTATTTA
*
7544180 TTTATTATATA
1 TTTATTATTTA
7544191 TTTTACTTATTTTA
1 -TTTA-TTA-TTTA
7544205 TTT-TTATTT
1 TTTATTATTT
7544214 TTATTTTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
10 3 0.06
11 16 0.33
12 11 0.22
13 6 0.12
14 10 0.20
15 3 0.06
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:7544176 original size:29 final size:28
Alignment explanation
Indices: 7544140--7544220 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 28
7544130 TGGAAAATGT
*
7544140 TTTTTTATTATTTATTTATTTA-TTTACC
1 TTTTTTATTATTTATTTATATATTTTA-C
7544168 TTTTGTTATTTATTTA-TTATATATTTTAC
1 TTTT-TTA-TTATTTATTTATATATTTTAC
7544197 TTATTTTATT-TTTATTT-T-TATTTT
1 TT-TTTTATTATTTATTTATATATTTT
7544221 GTTGCAGGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
26 6 0.13
27 5 0.11
28 8 0.17
29 15 0.32
30 13 0.28
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (28 bp):
TTTTTTATTATTTATTTATATATTTTAC
Found at i:7545501 original size:2 final size:2
Alignment explanation
Indices: 7545494--7545524 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7545484 TATTTTTATT
7545494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7545525 TTGACTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7545562 original size:4 final size:4
Alignment explanation
Indices: 7545553--7545609 Score: 50
Period size: 4 Copynumber: 15.0 Consensus size: 4
7545543 CATTTGTTTT
** *
7545553 TTTA TTTA TTTA -ACA TTTA TTTA -TTA -TTA TTGTT TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA
7545599 TTTA TTT- TTTA
1 TTTA TTTA TTTA
7545610 CTAACATTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
3 10 0.23
4 30 0.70
5 3 0.07
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:7546670 original size:17 final size:17
Alignment explanation
Indices: 7546650--7546682 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7546640 CTCACTAACC
*
7546650 CTTTTATTTTTTGTTCT
1 CTTTTATTTTGTGTTCT
7546667 CTTTTATTTTGTGTTC
1 CTTTTATTTTGTGTTC
7546683 ATCGTTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.12, G:0.09, T:0.73
Consensus pattern (17 bp):
CTTTTATTTTGTGTTCT
Found at i:7547336 original size:19 final size:19
Alignment explanation
Indices: 7547302--7547346 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7547292 ATTTATACAT
7547302 TTTGCA-TTTCTTATTTTC
1 TTTGCATTTTCTTATTTTC
*
7547320 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTCTTATTTTC
7547339 TTTGCATT
1 TTTGCATT
7547347 CACATTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.11, C:0.13, G:0.09, T:0.67
Consensus pattern (19 bp):
TTTGCATTTTCTTATTTTC
Found at i:7550926 original size:84 final size:81
Alignment explanation
Indices: 7550695--7551615 Score: 812
Period size: 84 Copynumber: 11.2 Consensus size: 81
7550685 TAAACAAACT
* * * * * *
7550695 ATTTGCAGCTTAGCTCAAGGCCAGAAGGGCTACCTG-CCACCAAGACCTTCGAGTTCGACTACGC
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCA--AAGACCTTCGAGTTCGACTACGC
*
7550759 TCAGCTCCAAGGCACATC
64 TCAGCTTCAAGGCACATC
* * * * * * * *
7550777 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTG-CCAAAGACCCTT-AAGTTCGATTACACT
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCAAAGA-CCTTCGAGTTCGACTACGCT
* *
7550840 CAGCTTCAAGGGCATAAC
65 CAGCTTCAA-GGCACATC
* * * * *
7550858 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGATCTTTGAGTTCGACTACGC
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTG--ACCAAAGACCTTCGAGTTCGACTACGC
*
7550923 TCAGCTCCAAGGCACATC
64 TCAGCTTCAAGGCACATC
* * * * * ** *
7550941 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTG-CCAAAGACCCACGAGTTCGACTACGTTC
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCAAAGACCTTCGAGTTCGACTACGCTC
* *
7551005 AGCTTCGAGGGCATATC
66 AGCTTC-AAGGCACATC
* * * * *
7551022 ATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCGTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTG--ACCA-AAGACCTTCGAGTTCGACTACG
*
7551087 CTCAGC-TCAACGGCACATT
63 CTCAGCTTCAA-GGCACATC
* * *
7551106 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTATG
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTG---ACCAAAGACCTTCGAGTTCGACTACG
* *
7551171 CTCAGCTCCAAGGCATATC
63 CTCAGCTTCAAGGCACATC
* * * * * *
7551190 ATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGATTTCGACTACG
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTG---ACCAAAGACCTTCGAGTTCGACTACG
7551255 CTCAGC-TCAACGGCACATC
63 CTCAGCTTCAA-GGCACATC
* * * * * * ** * *
7551274 ATTTCCAGTATAGCTTAAGTCGAGAAGGGCTATCTG-CCAAAGACCCCCGAGTTCGATTACACTC
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCAAAGACCTTCGAGTTCGACTACGCTC
* *
7551338 AGCTTCGAGGGCATATC
66 AGCTTC-AAGGCACATC
* *
7551355 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATC--TGACC-AAAGACCTTCGAGTTCGACTACG
*
7551420 CTCAGCTCCAAGGCACATC
63 CTCAGCTTCAAGGCACATC
* * ** * *
7551439 ATTTGCAGC---A--T-A-GCT-TAAGGGCTATCTG-CCAAAGACCCCCGAGTTCGATTACACTC
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCAAAGACCTTCGAGTTCGACTACGCTC
*
7551495 AGCTTCGAGGGCACATC
66 AGCTTC-AAGGCACATC
* *
7551512 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATC--TGACC-AAAGACCTTCGAGTTCGACTACG
*
7551577 CTCAGCTCCAAGGCACATC
63 CTCAGCTTCAAGGCACATC
*
7551596 ATTTGCAGCATAGCTTAAGG
1 ATTTGCAGCATAACTTAAGG
7551616 GCTATCTGCC
Statistics
Matches: 672, Mismatches: 133, Indels: 66
0.77 0.15 0.08
Matches are distributed among these distances:
72 27 0.04
73 19 0.03
74 2 0.00
76 10 0.01
77 3 0.00
78 1 0.00
79 1 0.00
80 78 0.12
81 121 0.18
82 34 0.05
83 46 0.07
84 245 0.36
85 85 0.13
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (81 bp):
ATTTGCAGCATAACTTAAGGCTAGAAGGGTTATCTGACCAAAGACCTTCGAGTTCGACTACGCTC
AGCTTCAAGGCACATC
Found at i:7551342 original size:333 final size:329
Alignment explanation
Indices: 7550708--7551708 Score: 1308
Period size: 333 Copynumber: 3.1 Consensus size: 329
7550698 TGCAGCTTAG
* * * *
7550708 CTCAAGGCCAGAAGGGCTACCTG-CCAC-CAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* *
7550771 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTT-AAGTTCGATT
66 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGA-CCTTCGAGTTCGATT
* * * *
7550835 ACACTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGC-
130 ACACTCAGCTCCAA-GGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACA
*
7550899 AAAGATCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGA
194 AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGA
* * **
7550964 GAAGGGCTATCTGCCAAAGACCCACGAGTTCGACTACGTTCAGCTTCGAGGGCATATCATTTACA
259 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACA
7551029 ACATAA
324 ACATAA
*
7551035 CTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCGTCGAGTTCGACTACGCTCAGCT-CAACG
1 CTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-G
* * *
7551099 GCACATTATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTC
65 GCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGACCTTCGAGTTC
* ** * * * * * *
7551164 GACTATGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCA
126 GATTACACTCAGCTCCAAGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCA
* * *
7551229 ACAAAAGACCTTTGATTTCGACTACGCTCAGCT-CAACGGCACATCATTTCCAGTATAGCTTAAG
191 ACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGAATAGCTTAAG
7551293 TCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATT
255 TCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATT
*
7551358 TACAGCATAA
320 TACAACATAA
* * *
7551368 CTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
**
7551433 CACATCATTTGCAGCATAGC-T---T----AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
66 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTA
* * * * *
7551490 CACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CACTCAGC-TCCAAGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAA
* *
7551555 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGC-T---T----
195 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * *
7551612 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAACTTTGAGGTCATATCGTTTACAA
260 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAA
*
7551677 CATAG
325 CATAA
* *
7551682 CTCAAGGCAAGAAGGGTTATTTGTCAA
1 CTCAAGGCTAGAAGGGTTATCTGTCAA
7551709 TAAAATTGTC
Statistics
Matches: 592, Mismatches: 69, Indels: 39
0.85 0.10 0.06
Matches are distributed among these distances:
314 87 0.15
318 1 0.00
321 27 0.05
322 92 0.16
323 3 0.01
325 11 0.02
327 20 0.03
328 6 0.01
329 70 0.12
332 48 0.08
333 224 0.38
334 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (329 bp):
CTCAAGGCTAGAAGGGTTATCTGTCAACACAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTA
CACTCAGCTCCAAGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAA
AGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAGA
AGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAAC
ATAA
Found at i:7551522 original size:73 final size:72
Alignment explanation
Indices: 7551397--7551652 Score: 269
Period size: 72 Copynumber: 3.4 Consensus size: 72
7551387 TCTGTGACCA
** * *
7551397 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGGGCT
1 AAAGACCCCCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGGGCT
7551462 ATCTGCC
66 ATCTGCC
* * *
7551469 AAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCT
1 AAAGACCCCCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTTACAGC---A-T--A-GCT
* *
7551534 AGAAGGGTTATCTGTGACC
58 -TAAGGGCTATC--TG-CC
** * *
7551553 AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGGGC
1 -AAAGACCCCCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGGGC
7551618 TATCTGCC
65 TATCTGCC
*
7551626 AAAGACCCCCGAGTTCGATTACACTCA
1 AAAGACCCCCGAGTTCGACTACACTCA
7551653 ACTTTGAGGT
Statistics
Matches: 149, Mismatches: 22, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
72 48 0.32
73 21 0.14
74 2 0.01
76 10 0.07
77 4 0.03
78 1 0.01
79 1 0.01
80 4 0.03
81 10 0.07
83 2 0.01
84 21 0.14
85 25 0.17
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (72 bp):
AAAGACCCCCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGGGCT
ATCTGCC
Found at i:7551523 original size:157 final size:160
Alignment explanation
Indices: 7550736--7551713 Score: 1184
Period size: 157 Copynumber: 6.0 Consensus size: 160
7550726 ACCTGCCACC
*
7550736 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTT-A-T---G
*** * *
7550801 AAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
61 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAG
* *
7550866 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGC-A
126 CATAACTCAAGGCTAGAAGGGTTATCTGTCAACAA
* * *
7550900 AAGATCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTT-A-T---G
* * ** *
7550965 AAGGGCTATCTGCCAAAGACCCACGAGTTCGACTACGTTCAGCTTCGAGGGCATATCATTTACAA
61 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAG
*
7551030 CATAACTCAAGGCTAGAAGGGTTATCTGTCAACAC
126 CATAACTCAAGGCTAGAAGGGTTATCTGTCAACAA
* * *
7551065 AAGACCGTCGAGTTCGACTACGCTCAGCT-CAACGGCACATTATTTGCAGCATAACTTAAGTCGA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAGCTT-A-T---
* ** * ** * *
7551129 GAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTATGCTCAGC-TCCAAGGCATATCATT
60 GAAGGGCTATCTG----CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATT
* * * * * *
7551193 TGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAA
121 TACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAA
* * * *
7551233 AAGACCTTTGATTTCGACTACGCTCAGCT-CAACGGCACATCATTTCCAGTATAGCTTAAGTCGA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAGCTT-A-T---
7551297 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACA
60 GAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACA
* *
7551362 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
125 GCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAA
7551398 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGC-T-T-AAGGG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTATGAAGGG
*
7551460 CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAA
66 CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAA
* *
7551525 CTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CTCAAGGCTAGAAGGGTTATCTGTCAACAA
7551555 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGC-T-T-AAGGG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTATGAAGGG
* * * * * *
7551617 CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAACTTTGAGGTCATATCGTTTACAACATAG
66 CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAA
* * *
7551682 CTCAAGGCAAGAAGGGTTATTTGTCAATAA
131 CTCAAGGCTAGAAGGGTTATCTGTCAACAA
7551712 AA
1 AA
7551714 TTGTCGAGTT
Statistics
Matches: 731, Mismatches: 75, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
157 246 0.34
161 1 0.00
164 180 0.25
165 159 0.22
166 3 0.00
168 115 0.16
169 27 0.04
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (160 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTATGAAGGG
CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAA
CTCAAGGCTAGAAGGGTTATCTGTCAACAA
Found at i:7552395 original size:34 final size:34
Alignment explanation
Indices: 7552258--7552513 Score: 189
Period size: 34 Copynumber: 7.3 Consensus size: 34
7552248 ATATATAGAT
* * *
7552258 ATATGTATATTATAGTTTTAAAATATTTTT-AAA
1 ATATATATAATATAGTTTTTAAATATTTTTGAAA
** * *
7552291 ACCTATATATAATATATAGTTTGAAAACATGTTTGAAA
1 A--TATATAT-A-ATATAGTTTTTAAATATTTTTGAAA
*
7552329 ATATTATATATTTATAGTTTTTAAAGTA--TTTGAAA
1 ATA-TATATA-ATATAGTTTTTAAA-TATTTTTGAAA
* *
7552364 ATAAATATAATATAGTTTTTACATATTTTTGAAA
1 ATATATATAATATAGTTTTTAAATATTTTTGAAA
* *
7552398 ATATGTATTATATAGTTTTTAAAGTA-TTTTGAAA
1 ATATATATAATATAGTTTTTAAA-TATTTTTGAAA
* * * *
7552432 ATAAATATACTATATAATTTTTAAAACTTTTTTTTTAAAA
1 ATATATATA--ATATAGTTTTT-AAA---TATTTTTGAAA
* *
7552472 ATATATATTATATAGTTTTTAAACA-TTTTGAAA
1 ATATATATAATATAGTTTTTAAATATTTTTGAAA
7552505 ATATATATA
1 ATATATATA
7552514 GTTTTAAAAA
Statistics
Matches: 177, Mismatches: 30, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
32 2 0.01
33 28 0.16
34 45 0.25
35 18 0.10
36 26 0.15
37 29 0.16
38 14 0.08
39 1 0.01
40 14 0.08
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (34 bp):
ATATATATAATATAGTTTTTAAATATTTTTGAAA
Found at i:7552588 original size:33 final size:34
Alignment explanation
Indices: 7552546--7552612 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
7552536 AGAACATATA
* * *
7552546 TATATATATAGTTTTTAAATCA-TTTCAAAAACT
1 TATATATATAATTTTAAAAACATTTTCAAAAACT
*
7552579 TATATATATAATTTTAAAAACATTTTTAAAAACT
1 TATATATATAATTTTAAAAACATTTTCAAAAACT
7552613 ATAATTTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 19 0.66
34 10 0.34
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.45
Consensus pattern (34 bp):
TATATATATAATTTTAAAAACATTTTCAAAAACT
Found at i:7552700 original size:34 final size:33
Alignment explanation
Indices: 7552612--7552700 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 33
7552602 TTTTAAAAAC
*
7552612 TATAATTTTGGAAATGTTTTCAAAAAACATATAA
1 TATAATTTTGGAAATGTTTT-TAAAAACATATAA
* * * * *
7552646 TATATAATTT-AAAATATTTTTAAAAATATATTA
1 TATA-ATTTTGGAAATGTTTTTAAAAACATATAA
7552679 TATAGATTTTGGAAATGTTTTT
1 TATA-ATTTTGGAAATGTTTTT
7552701 TTTATTTTTA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
33 18 0.42
34 21 0.49
35 4 0.09
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (33 bp):
TATAATTTTGGAAATGTTTTTAAAAACATATAA
Found at i:7552728 original size:26 final size:27
Alignment explanation
Indices: 7552699--7552771 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
7552689 GGAAATGTTT
7552699 TTTTTATTTTTATTTATTTA-TTTACC
1 TTTTTATTTTTATTTATTTATTTTACC
* *
7552725 TTTTGT-TATTTTA-TTATATATTTTACT
1 TTTT-TAT-TTTTATTTATTTATTTTACC
*
7552752 TATTTTATTTTTTTTTATTT
1 T-TTTTATTTTTATTTATTT
7552772 TGTTGCAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
26 11 0.30
27 17 0.46
28 9 0.24
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.75
Consensus pattern (27 bp):
TTTTTATTTTTATTTATTTATTTTACC
Found at i:7554208 original size:12 final size:13
Alignment explanation
Indices: 7554191--7554220 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7554181 TCGAATCGAG
7554191 TAATTTAAA-TTT
1 TAATTTAAATTTT
7554203 TAATTTAAATTTT
1 TAATTTAAATTTT
7554216 TAATT
1 TAATT
7554221 CTTCGCAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTTAAATTTT
Found at i:7557534 original size:20 final size:20
Alignment explanation
Indices: 7557509--7557557 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7557499 AATTAAGTAA
*
7557509 TAAAAATTAACAAATAAAAT
1 TAAAAATTAAAAAATAAAAT
*
7557529 TAAAAATTAAAAAATTAAAT
1 TAAAAATTAAAAAATAAAAT
*
7557549 AAAAAATTA
1 TAAAAATTA
7557558 CAATTCTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAATTAAAAAATAAAAT
Found at i:7557707 original size:3 final size:3
Alignment explanation
Indices: 7557692--7557730 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
7557682 TTATTATGAC
*
7557692 TCA TCA CTC- TCA TCA TCA TCA TCA TCA CCA TCA TCA TCA
1 TCA TCA -TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
7557731 GTAGCATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.88
4 2 0.06
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:7559803 original size:15 final size:15
Alignment explanation
Indices: 7559778--7559821 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
7559768 CTGTAAAAAT
7559778 TAATAAAAATTTAATA
1 TAAT-AAAATTTAATA
7559794 TAATAAAATTTAATA
1 TAATAAAATTTAATA
*
7559809 AAATAATAATTTA
1 TAATAA-AATTTA
7559822 TTAATTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAAAATTTAATA
Found at i:7559882 original size:17 final size:17
Alignment explanation
Indices: 7559862--7559904 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
7559852 CCTTTTTAAT
7559862 AGAATTTGAATTTTACG
1 AGAATTTGAATTTTACG
7559879 AGAATTTGAATTTTACG
1 AGAATTTGAATTTTACG
7559896 AGAATTTGA
1 AGAATTTGA
7559905 GCGGGTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.40
Consensus pattern (17 bp):
AGAATTTGAATTTTACG
Found at i:7560953 original size:20 final size:19
Alignment explanation
Indices: 7560930--7560976 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
7560920 CGATATACCA
7560930 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
7560950 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
*
7560970 GATAAAA
1 GGTAAAA
7560977 CGTTACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.11, G:0.15, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7561133 original size:20 final size:19
Alignment explanation
Indices: 7561110--7561156 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
7561100 CGATATAACA
7561110 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
7561130 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
7561150 GGTAAAA
1 GGTAAAA
7561157 CGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7561141 original size:180 final size:182
Alignment explanation
Indices: 7560718--7561189 Score: 705
Period size: 180 Copynumber: 2.6 Consensus size: 182
7560708 GATCCAAATT
* * * * * **
7560718 AAAAATGTGTCGATCCAAAACAATATAACAGGTAAAACTATGACAAAACCGATATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
7560783 AAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATAGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATAGACACTTC
*
7560848 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTTA
*
7560900 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
7560965 AAACCGATAAAACGTTACCGGATATATTGAAAGTGTCGATA-TTTTATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATAGACACTTC
** *
7561029 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATAC-TTTA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTTA
* *
7561080 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
*
7561145 AAACCGGTAAAACGATACCGGATATATTGAAAGTATCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
7561190 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
180 104 0.40
181 66 0.25
182 92 0.35
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATAGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTTA
Found at i:7561161 original size:17 final size:19
Alignment explanation
Indices: 7561121--7561161 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7561111 GTAAAAATAT
*
7561121 GATAAAACCGGTATCAAAAT
1 GATAAAACCGG-ATCAAAAC
7561141 GATAAAACCGG-T-AAAAC
1 GATAAAACCGGATCAAAAC
7561158 GATA
1 GATA
7561162 CCGGATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 1 0.05
20 11 0.55
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (19 bp):
GATAAAACCGGATCAAAAC
Found at i:7563412 original size:21 final size:21
Alignment explanation
Indices: 7563388--7563431 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7563378 AAGACAATCA
7563388 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
7563409 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
7563430 AG
1 AG
7563432 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:7563504 original size:33 final size:33
Alignment explanation
Indices: 7563462--7563529 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
7563452 GAAAAATAGA
*
7563462 TGGAGTGGTGAAAGAAGTAGAGG-TGTTGAGGGG
1 TGGAGTGGTGAAAGAAGTAG-GGTTGTTAAGGGG
*
7563495 TGGAGTGGTGAAAGAAGTTGGGTTGTTAAGGGG
1 TGGAGTGGTGAAAGAAGTAGGGTTGTTAAGGGG
7563528 TG
1 TG
7563530 ATATTAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.25, C:0.00, G:0.50, T:0.25
Consensus pattern (33 bp):
TGGAGTGGTGAAAGAAGTAGGGTTGTTAAGGGG
Found at i:7565349 original size:19 final size:19
Alignment explanation
Indices: 7565325--7565373 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
7565315 AATGTAGGGT
7565325 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
7565344 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
7565363 TAATTTTGTAT
1 TAATTTTGTAT
7565374 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:7566272 original size:200 final size:200
Alignment explanation
Indices: 7565607--7566572 Score: 1680
Period size: 200 Copynumber: 4.8 Consensus size: 200
7565597 AATTTACAAT
* *
7565607 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAGAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
7565672 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
7565737 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
7565802 AATGA
196 AATGA
*
7565807 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
7565872 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
7565937 ATAAAAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCC
131 AT--GAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCC
7566002 AGAATGA
194 AGAATGA
* * *
7566009 ATGGTAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTAGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
7566074 CGAAACCCATAAGTATAATATAATAGGTAATTTTTTAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
7566139 ATGAGAGAATAGGTCTAAATAATGTTTCAACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
7566204 AATGA
196 AATGA
7566209 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
7566274 TGAAACCCATAAGTATAATGTAATAGGTAATTTTTTAATCTAACCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * * *
7566339 ATGAGAGAATAAGTCTAAATAATGTGTCGATACTTTTGTAGTTTGTGTCTATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
*
7566404 ATTGA
196 AATGA
*
7566409 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
7566474 CTAAACCCATAAGTATAATGTATTAGGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
7566539 ATGAGAGAATAGGTCTAAATAATGTATCGACACT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACT
7566573 GTTTAATGTT
Statistics
Matches: 727, Mismatches: 37, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
200 532 0.73
202 195 0.27
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:7568093 original size:12 final size:12
Alignment explanation
Indices: 7568071--7568110 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
7568061 CAAGCAGTCA
*
7568071 ATGAAGATGAAG
1 ATGACGATGAAG
*
7568083 CTGACGATGAAG
1 ATGACGATGAAG
*
7568095 ATGACGATGATG
1 ATGACGATGAAG
7568107 ATGA
1 ATGA
7568111 TGATCCAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:7568109 original size:18 final size:18
Alignment explanation
Indices: 7568071--7568110 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7568061 CAAGCAGTCA
*
7568071 ATGAAGATGAAGCTGACG
1 ATGAAGATGAAGATGACG
* *
7568089 ATGAAGATGACGATGATG
1 ATGAAGATGAAGATGACG
7568107 ATGA
1 ATGA
7568111 TGATCCAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (18 bp):
ATGAAGATGAAGATGACG
Found at i:7569622 original size:120 final size:120
Alignment explanation
Indices: 7569406--7569652 Score: 413
Period size: 120 Copynumber: 2.1 Consensus size: 120
7569396 ACATCGGAAC
7569406 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
*
7569471 GAATAGGTCTACAACCTATGTCGACACTTTTTAATTTTGTGTCAGTACTTTATGT
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCAGTACTTTATGT
* * * * *
7569526 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATATCGATTTTATTAGT
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
* *
7569591 GAATAGGTCTACAACCTATGTCGACATTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCAGTACTTTATGT
*
7569646 CGAGAAT
1 CCAGAAT
7569653 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.39
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCAGTACTTTATGT
Found at i:7569892 original size:303 final size:303
Alignment explanation
Indices: 7569340--7570724 Score: 2504
Period size: 303 Copynumber: 4.6 Consensus size: 303
7569330 TTTAATATTG
* *
7569340 TGTCCAGAATGGAAGAAAAATGTGTCGATACATTGTCAAAAAGTGTCGAAATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
7569405 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
* *
7569470 CGAATAGGTCTACAACCTATGTCGACACTTTTTAATTTTGTGTCAGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* *
7569535 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATATCGATTTTATTAGTGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
*
7569600 TACAACCTATGTCGACATTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
*
7569643 TGTCGAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
7569708 CCCAGAACTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
7569773 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
*
7569838 TAATGTACTAGATAAGTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
7569903 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
* *
7569946 TGTCCAGAATGGAAGAAAAATGTGTCAATACATTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
7570011 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
7570076 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* * *
7570141 TAATGTAATAGATAATTTTGTAATATAACCGGTATATGTATACCGGTTTTATTAGCGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
7570206 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
7570249 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
7570314 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
7570379 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTAC-TT-TGTCCAGAATTA
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
* * * * *
7570442 TAATGTACTAGATAATTTTATAATATAATCGGTATAAGTATACTGGTTTTATTAACGAATAGGTC
196 TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
*
7570507 TACAACCTATGTCGACATTTTTTAATATTGTGTCGGTACTTTA
261 TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
* *
7570550 TATCCAGAATGTAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
1 TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
*
7570615 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAG
66 CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
*
7570680 CGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCG
131 CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCG
7570725 CTAATTTTAA
Statistics
Matches: 1046, Mismatches: 36, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
301 283 0.27
302 2 0.00
303 761 0.73
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (303 bp):
TGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA
CCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAG
CGAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATTA
TAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGCGAATAGGTC
TACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTA
Found at i:7569922 original size:120 final size:120
Alignment explanation
Indices: 7569709--7569955 Score: 422
Period size: 120 Copynumber: 2.1 Consensus size: 120
7569699 ACATCGGAAC
* * *
7569709 CCAGAACTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAAGTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
*
7569774 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * *
7569829 CCAGAATTATAATGTACTAGATAAGTTTGTAATATAACCGGTATAAGTATACCGATTTTATTAGC
1 CCAGAATTATAATGTAATAGATAAGTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
*
7569894 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
7569949 CCAGAAT
1 CCAGAAT
7569956 GGAAGAAAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAAGTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:7570225 original size:120 final size:120
Alignment explanation
Indices: 7570012--7570258 Score: 440
Period size: 120 Copynumber: 2.1 Consensus size: 120
7570002 ACATCGGAAC
*
7570012 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
*
7570077 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
** *
7570132 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATATGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
*
7570197 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
7570252 CCAGAAT
1 CCAGAAT
7570259 GGAAGAAAAA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:7570523 original size:118 final size:118
Alignment explanation
Indices: 7570315--7570548 Score: 369
Period size: 118 Copynumber: 2.0 Consensus size: 118
7570305 ACATCGGAAC
* *
7570315 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTATAATATAACCGGTATAAATATACCAGTTTTATGAAC
*
7570380 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGT
* * * ** *
7570433 CCAGAATTATAATGTACTAGATAATTTTATAATATAATCGGTATAAGTATACTGGTTTTATTAAC
1 CCAGAATTATAATGTAATAGATAATTTTATAATATAACCGGTATAAATATACCAGTTTTATGAAC
* *
7570498 GAATAGGTCTACAACCTATGTCGACATTTTTTAATATTGTGTCGGTACTTT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTT
7570549 ATATCCAGAA
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (118 bp):
CCAGAATTATAATGTAATAGATAATTTTATAATATAACCGGTATAAATATACCAGTTTTATGAAC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTGT
Found at i:7573480 original size:23 final size:23
Alignment explanation
Indices: 7573449--7573521 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
7573439 ATAGGTAAAA
*
7573449 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
7573472 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
7573495 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
7573518 ATAT
1 ATAT
7573522 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:7573970 original size:23 final size:23
Alignment explanation
Indices: 7573939--7574011 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
7573929 ATAGGTAAAA
*
7573939 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
7573962 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
7573985 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
7574008 ATAT
1 ATAT
7574012 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:7574461 original size:23 final size:23
Alignment explanation
Indices: 7574430--7574502 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
7574420 ATAGGTAAAA
*
7574430 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
**
7574453 ATATAATGTAATAGGTAGCATTT
1 ATATAATGTAATAGGTAGCGCTT
*
7574476 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
7574499 ATAT
1 ATAT
7574503 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:7574626 original size:491 final size:489
Alignment explanation
Indices: 7573263--7574903 Score: 2980
Period size: 490 Copynumber: 3.4 Consensus size: 489
7573253 GACCCAAATT
* * * *
7573263 AATATTATTTTGTAAAATATCAAAACAATCAAATAATTTTTTTTGTAAATGGAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
7573328 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAA
66 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAA
* *
7573393 AAAAGTATCGATCATTTTTATAAAAAGTATGAATACTTTCAATATAATAGGTAAAAATATGATGT
131 AAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
7573458 AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
196 AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
* *
7573523 GTAAAGTATCTATCCTTTTTATAAAAGTGTACATACTTTTTTCACTGTGGAAAACATTAATTTAA
261 GTAAAGTATCTATCCTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAATATTAATTTAA
*
7573588 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
326 GGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
7573653 TTATGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTAT
391 TTATGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTAT
*
7573718 TATCTTTGGTTAATATTGTTAAATTTAAAATCTA
456 TATCTTTGGTTAATATTGTTAAATTTAAATTCTA
* *
7573752 AATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
* *
7573817 ATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
66 ATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTAAAACATAAATTACATAACTTTAA
7573882 AAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
130 AAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
7573947 TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
195 TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
*
7574012 TGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATTAATTTA
260 TGTAAAGTATCTATCCTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAATATTAATTTA
7574077 AGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTT
325 AGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTT
* *
7574142 TTTACGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTA
390 TTTATGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTA
7574207 TTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
455 TTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
*
7574242 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTACAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
*
7574307 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
66 ATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTAAAACATAAATTACATAACTTT-A
7574372 AAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
129 AAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
*
7574437 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCATTTATATAATGTAATAGGTAGTGCTTATA
194 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
*
7574502 TTGTAAAGTATATATCCTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAATATTAATTT
259 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAATATTAATTT
* **
7574567 AAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATT
324 AAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATT
*
7574632 TTTTATGTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATT
389 TTTTATGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATT
7574697 ATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
454 ATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
7574733 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
1 AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
* *
7574798 ATATTGTAGGTGAAAAACATGAAACACTATT--AAAAATTAAAATATAAATTACATAACTTTAAA
66 ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAA
*
7574861 AAAAGTATCGATCCTTTTTATAAAAAAGTATGGACACTTTCAA
131 AAAAGTATCGATCATTTTTAT-AAAAAGTATGGACACTTTCAA
7574904 CATATTATAA
Statistics
Matches: 1116, Mismatches: 33, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
487 23 0.02
488 48 0.04
489 91 0.08
490 507 0.45
491 447 0.40
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (489 bp):
AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTAAAACATAAATTACATAACTTTAAA
AAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGT
AATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATT
GTAAAGTATCTATCCTTTTTATAAAAGTGTACATACTTATTTCACTGTGGAAAATATTAATTTAA
GGTTATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
TTATGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTAT
TATCTTTGGTTAATATTGTTAAATTTAAATTCTA
Found at i:7575707 original size:112 final size:112
Alignment explanation
Indices: 7575539--7575743 Score: 331
Period size: 112 Copynumber: 1.8 Consensus size: 112
7575529 AAAAAATATC
* *
7575539 GATCCATAACAATATAACATGTAAAAATATGATAAAACTGGTCTAAAAAATGACAAAACCGGAAA
1 GATCCATAACAATATAACAGGTAAAAATATGATAAAACTGGTATAAAAAATGACAAAACCGGAAA
*
7575604 AAATTACCGGATATATTGAAAGTGTCGACACTTTATGAAATTGTATT
66 AAATTACCGGATATATTAAAAGTGTCGACACTTTATGAAATTGTATT
* * *
7575651 GATCCTTACCAATATAACAGGTAAAAATATGATAAAACAT-GTATCAAAAATGACAAAACCGGAA
1 GATCCATAACAATATAACAGGTAAAAATATGATAAAAC-TGGTATAAAAAATGACAAAACCGGAA
*
7575715 AAAATTACCGGATATGTTAAAAGTGTCGA
65 AAAATTACCGGATATATTAAAAGTGTCGA
7575744 TAATTTAATA
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
112 84 0.99
113 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.25
Consensus pattern (112 bp):
GATCCATAACAATATAACAGGTAAAAATATGATAAAACTGGTATAAAAAATGACAAAACCGGAAA
AAATTACCGGATATATTAAAAGTGTCGACACTTTATGAAATTGTATT
Found at i:7575977 original size:183 final size:183
Alignment explanation
Indices: 7575622--7576146 Score: 691
Period size: 183 Copynumber: 2.9 Consensus size: 183
7575612 GGATATATTG
* * * * *
7575622 AAAGTGTCGACACTTTATGAAATTGTATTGATCCTTACCAATATAACAGGTAAAAATATGATAAA
1 AAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGATAAA
* * * * * *
7575687 ACATGTATCAAAAATGACAAAACC-GGAAAAA-ATTACCGGATATGTTAAAAGTGTCGATAATTT
66 ACAAGTCTCAAAATTGACAAAACCAGTAAAAAGA-TACTGGATATGTTGAAAGTGTCGATAATTT
7575750 AATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAAAAGTTATTA-C-GCTTAA
130 AATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAAAAGTTA-TAGCGGC-TAA
*
7575804 AAAGTGTCGACACTTTATGAAAATGTATCGATTCATAACAATATAACATGTAAAAATATGATAAA
1 AAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGATAAA
* * * *
7575869 AAAAGTCTCAAAATTGACAAAACCAGTAAAACGCTACTGGATATATTGAAAGTGTCGATAATTTA
66 ACAAGTCTCAAAATTGACAAAACCAGTAAAAAGATACTGGATATGTTGAAAGTGTCGATAATTTA
* * *
7575934 ATATAAGTATCGAAACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGGCTAT
131 ATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAAAAGTTATAGCGGCTAA
* * ** ** * *
7575987 AAAGTGTCGATACTTCAAAAAAAAATATCGATCCACAACAATATAACATGTAAAAATATAATAAA
1 AAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGATAAA
* * *
7576052 ACAGGTCCCAAAATTGACAAAACCAGTAAAATGATA-TCGGATATGTTGAAAGTGTCGATAATTT
66 ACAAGTCTCAAAATTGACAAAACCAGTAAAAAGATACT-GGATATGTTGAAAGTGTCGATAATTT
* *
7576116 AATATAAGTATCGGCACTTTCTGAAATTAAA
130 AATATAAGTATCGACACTTTCTGAATTTAAA
7576147 CTAAAAAATG
Statistics
Matches: 301, Mismatches: 37, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
182 82 0.27
183 217 0.72
184 2 0.01
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (183 bp):
AAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGATAAA
ACAAGTCTCAAAATTGACAAAACCAGTAAAAAGATACTGGATATGTTGAAAGTGTCGATAATTTA
ATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAAAAGTTATAGCGGCTAA
Found at i:7576227 original size:21 final size:20
Alignment explanation
Indices: 7576199--7576238 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7576189 CAATATAACA
* *
7576199 GGTAAAAATATGATAAAACT
1 GGTAAAAAAATGACAAAACT
7576219 GGTATAAAAAATGACAAAAC
1 GGTA-AAAAAATGACAAAAC
7576239 CAAAAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (20 bp):
GGTAAAAAAATGACAAAACT
Found at i:7576462 original size:182 final size:182
Alignment explanation
Indices: 7576148--7576646 Score: 759
Period size: 182 Copynumber: 2.7 Consensus size: 182
7576138 GAAATTAAAC
*
7576148 TAAAAAATGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT
1 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT
* * * *
7576213 AAAAC-TGGTATAAAAAATGACAAAACCAAAAAAAGTTACCGGATATATTGAAAGTGTCGATAAT
66 AAAACAT-GTCTCAAAAATGACAAAACCAGAAAAAGTTACCGGATATGTTGAAAGTGTCGATAAT
* *
7576277 TTAATATTAGTATCTACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCACT
130 TTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCACT
* * * *
7576330 TAAAAAGTGTCGACACTTTATTAAAATGTATCGATCCTTACCAATATAACAGGTAAAAATATCAT
1 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT
* *
7576395 AAAACATGTCTCAAAAATAACAAAACCAGAAAAAGTTACCAGATATGTTGAAAGTGTCGATAATT
66 AAAACATGTCTCAAAAATGACAAAACCAGAAAAAGTTACCGGATATGTTGAAAGTGTCGATAATT
*
7576460 TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCT
131 TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCACT
* *
7576512 TAAAAAGTGTCGACACTTTATGAAAATGCATCGATCCATAACAATATAACATGTAAAAATATGAT
1 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT
* * * * * * *
7576577 AAAACATATCTC-AAATTGACAAAATCGGTAAATAGATACCGGATATGTTGAAAGTGTCGATACT
66 AAAACATGTCTCAAAAATGACAAAACCAG-AAAAAGTTACCGGATATGTTGAAAGTGTCGATAAT
7576641 TTAATA
130 TTAATA
7576647 AGTACGCGTA
Statistics
Matches: 286, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
181 12 0.04
182 273 0.95
183 1 0.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (182 bp):
TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT
AAAACATGTCTCAAAAATGACAAAACCAGAAAAAGTTACCGGATATGTTGAAAGTGTCGATAATT
TAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCACT
Found at i:7576710 original size:529 final size:528
Alignment explanation
Indices: 7575631--7576646 Score: 1461
Period size: 529 Copynumber: 1.9 Consensus size: 528
7575621 GAAAGTGTCG
* * * * * *
7575631 ACACTTTATGAAATTGTATTGATCCTTACCAATATAACAGGTAAAAATATGATAAAACATGTATC
1 ACACTCTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACATGTATA
* *
7575696 AAAAATGACAAAACCGGAAAAAATTACCGGATATGTTAAAAGTGTCGATAATTTAATATAAGTAT
66 AAAAATGACAAAACCGAAAAAAATTACCGGATATATTAAAAGTGTCGATAATTTAATATAAGTAT
*
7575761 CGACACTTTCTGAATTTAAAAGAGAAAAAGTTATTACGCTTAAAAAGTGTCGACACTTTATGAAA
131 CGACACTTTCTGAATTTAAAAGAGAAAAAGTTATTACACTTAAAAAGTGTCGACACTTTATGAAA
* * * * *
7575826 ATGTATCGATTCATAACAATATAACATGTAAAAATATGATAAAAAAAGTCTCAAAATTGACAAAA
196 ATGTATCGATCCATAACAATATAACAGGTAAAAATATCATAAAAAAAGTCTCAAAAATAACAAAA
* **
7575891 CCAGTAAAACGCTACTGGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTG
261 CCAGTAAAAAGCTACCAGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTG
* * *
7575956 AATTTAAAAGAGAAGAAGTTATAGCGGCTATAAAGTGTCGATACTTCAAAAAAAAATATCGATCC
326 AATTTAAAAGAGAAGAAGTTATAGCGGCTAAAAAGTGTCGACACTTCAAAAAAAAACATCGATCC
*
7576021 ACAACAATATAACATGTAAAAATATAATAAAACAGGTCCCAAAATTGACAAAACCAGTAAAATGA
391 ACAACAATATAACATGTAAAAATATAATAAAACAGATCCCAAAATTGACAAAACCAGTAAAATGA
* * **
7576086 TATCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGGCACTTTCTGAAATTAAACTAA
456 TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGG-ACGTAATGAAATTAAACTAA
**
7576151 AAAATGTCG
520 AAAATGTAA
*
7576160 ACACTTTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAAC-TGGTAT
1 ACACTCTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAT-GTAT
* *
7576224 AAAAAATGACAAAACC-AAAAAAAGTTACCGGATATATTGAAAGTGTCGATAATTTAATATTAGT
65 AAAAAATGACAAAACCGAAAAAAA-TTACCGGATATATTAAAAGTGTCGATAATTTAATATAAGT
* * *
7576288 ATCTACACTTTCTGAATTTAAAAGAGAAGAAGTTA-TAGCACTTAAAAAGTGTCGACACTTTATT
129 ATCGACACTTTCTGAATTTAAAAGAGAAAAAGTTATTA-CACTTAAAAAGTGTCGACACTTTATG
* * * *
7576352 AAAATGTATCGATCCTTACCAATATAACAGGTAAAAATATCATAAAACATGTCTCAAAAATAACA
193 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATCATAAAAAAAGTCTCAAAAATAACA
* * *
7576417 AAACCAG-AAAAAGTTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
258 AAACCAGTAAAAAGCTACCAGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTT
* ** **
7576481 CTGAATTTAAAAGAGAAGAAGTTATAGC-GCTTAAAAAGTGTCGACACTTTATGAAAATGCATCG
323 CTGAATTTAAAAGAGAAGAAGTTATAGCGGC-TAAAAAGTGTCGACACTTCAAAAAAAAACATCG
* * * * * *
7576545 ATCCATAACAATATAACATGTAAAAATATGATAAAACATATCTC-AAATTGACAAAATCGGT-AA
387 ATCCACAACAATATAACATGTAAAAATATAATAAAACAGATCCCAAAATTGACAAAACCAGTAAA
*
7576608 ATAGATACCGGATATGTTGAAAGTGTCGATACTTTAATA
452 AT-GATACCGGATATGTTGAAAGTGTCGATAATTTAATA
7576647 AGTACGCGTA
Statistics
Matches: 437, Mismatches: 45, Indels: 12
0.88 0.09 0.02
Matches are distributed among these distances:
526 4 0.01
527 51 0.12
528 152 0.35
529 230 0.53
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (528 bp):
ACACTCTATGAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACATGTATA
AAAAATGACAAAACCGAAAAAAATTACCGGATATATTAAAAGTGTCGATAATTTAATATAAGTAT
CGACACTTTCTGAATTTAAAAGAGAAAAAGTTATTACACTTAAAAAGTGTCGACACTTTATGAAA
ATGTATCGATCCATAACAATATAACAGGTAAAAATATCATAAAAAAAGTCTCAAAAATAACAAAA
CCAGTAAAAAGCTACCAGATATATTGAAAGTGTCGATAATTTAATATAAGTATCGAAACTTTCTG
AATTTAAAAGAGAAGAAGTTATAGCGGCTAAAAAGTGTCGACACTTCAAAAAAAAACATCGATCC
ACAACAATATAACATGTAAAAATATAATAAAACAGATCCCAAAATTGACAAAACCAGTAAAATGA
TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGGACGTAATGAAATTAAACTAAA
AAATGTAA
Found at i:7577056 original size:18 final size:19
Alignment explanation
Indices: 7577033--7577077 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7577023 TAGTTAATAT
7577033 TTATAGGTA-AAAATGATA
1 TTATAGGTAGAAAATGATA
7577051 TTATAGGTAGAAAATGATA
1 TTATAGGTAGAAAATGATA
*
7577070 TTTTAGGT
1 TTATAGGT
7577078 TGTATAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (19 bp):
TTATAGGTAGAAAATGATA
Found at i:7577365 original size:18 final size:18
Alignment explanation
Indices: 7577330--7577368 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7577320 TTGAAATGAT
7577330 AATTGGATTAAAACTTTA
1 AATTGGATTAAAACTTTA
*
7577348 AATT-GATTACAAATTTTA
1 AATTGGATTA-AAACTTTA
7577366 AAT
1 AAT
7577369 GTTGACAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (18 bp):
AATTGGATTAAAACTTTA
Found at i:7577548 original size:25 final size:25
Alignment explanation
Indices: 7577515--7577570 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
7577505 GACAAAAGAT
*
7577515 GTGAGGTCGAAATGGAATTCGATGA
1 GTGATGTCGAAATGGAATTCGATGA
7577540 GTGATGTCGAAATGGAATTCGATGA
1 GTGATGTCGAAATGGAATTCGATGA
7577565 GTGATG
1 GTGATG
7577571 CCAAAAAGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.36, T:0.27
Consensus pattern (25 bp):
GTGATGTCGAAATGGAATTCGATGA
Found at i:7577581 original size:25 final size:25
Alignment explanation
Indices: 7577528--7577581 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
7577518 AGGTCGAAAT
* * *
7577528 GGAATTCGATGAGTGATGTCGAAAT
1 GGAATTCGATGAGTGATGCCAAAAA
7577553 GGAATTCGATGAGTGATGCCAAAAA
1 GGAATTCGATGAGTGATGCCAAAAA
7577578 GGAA
1 GGAA
7577582 CCTTACATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.09, G:0.31, T:0.22
Consensus pattern (25 bp):
GGAATTCGATGAGTGATGCCAAAAA
Found at i:7580601 original size:19 final size:19
Alignment explanation
Indices: 7580575--7580623 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
7580565 AAATGCATGG
7580575 TTAA-TTTGTATAAGATTT
1 TTAATTTTGTATAAGATTT
*
7580593 TTAATTTTGTATACGATTT
1 TTAATTTTGTATAAGATTT
*
7580612 ATAATTTTGTAT
1 TTAATTTTGTAT
7580624 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TTAATTTTGTATAAGATTT
Found at i:7581309 original size:199 final size:199
Alignment explanation
Indices: 7580969--7581663 Score: 1201
Period size: 199 Copynumber: 3.5 Consensus size: 199
7580959 GTAAACTTAT
7580969 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
** * * *
7581034 GGTAAATTAGCAATATAACTAGTCTAAATATACCGGTTTTTGAGAAAACAAGTGTAAAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
7581099 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
7581164 AAAA
196 AAAA
7581168 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
*
7581233 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAATAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
* *
7581298 TCGACACAAATCGAATAAGTGTCGATACTTTTTGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
7581363 AAAA
196 AAAA
* *
7581367 GTGTCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * *
7581432 GGTAAATTAGCAATATAATCGGTCTAAATATATCAGTTTTTGAGAAAACCGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
7581497 TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
7581562 AAAA
196 AAAA
* * *
7581566 GTGTTGATACATTTATAACAAGTGTCGATCCCAAAAAAATCGAAAACCATAATTATAATATAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
* * *
7581631 TGTAAATTAACAATATAACTGGTCTAAATATAC
66 GGTAAATTAGCAATATAACCGGTCTAAATATAC
7581664 TGGTTTAAAT
Statistics
Matches: 468, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
199 468 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.28
Consensus pattern (199 bp):
GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
TCGACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
AAAA
Found at i:7582037 original size:15 final size:15
Alignment explanation
Indices: 7582017--7582058 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
7582007 TTTCTCAAAT
7582017 CTCTTCTCAACCCAC
1 CTCTTCTCAACCCAC
* *
7582032 CTCTTCCCAACCCAG
1 CTCTTCTCAACCCAC
7582047 CTCTTCTCAACC
1 CTCTTCTCAACC
7582059 ACAATCTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.19, C:0.52, G:0.02, T:0.26
Consensus pattern (15 bp):
CTCTTCTCAACCCAC
Found at i:7584434 original size:15 final size:15
Alignment explanation
Indices: 7584414--7584455 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
7584404 TTTCTCAAAT
7584414 CTCTTCTCAACCCAC
1 CTCTTCTCAACCCAC
* *
7584429 CTCTTCCCAACCCAG
1 CTCTTCTCAACCCAC
7584444 CTCTTCTCAACC
1 CTCTTCTCAACC
7584456 ACAATCTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.19, C:0.52, G:0.02, T:0.26
Consensus pattern (15 bp):
CTCTTCTCAACCCAC
Found at i:7586830 original size:15 final size:15
Alignment explanation
Indices: 7586810--7586851 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
7586800 TTTCTCAAAT
7586810 CTCTTCTCAACCCAC
1 CTCTTCTCAACCCAC
* *
7586825 CTCTTCCCAACCCAG
1 CTCTTCTCAACCCAC
7586840 CTCTTCTCAACC
1 CTCTTCTCAACC
7586852 ACAATCTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.19, C:0.52, G:0.02, T:0.26
Consensus pattern (15 bp):
CTCTTCTCAACCCAC
Found at i:7589463 original size:21 final size:21
Alignment explanation
Indices: 7589439--7589484 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7589429 ACAAAATGTA
7589439 TCGACACAAATAAAACAAGTG
1 TCGACACAAATAAAACAAGTG
* **
7589460 TCGATACATTTAAAACAAGTG
1 TCGACACAAATAAAACAAGTG
7589481 TCGA
1 TCGA
7589485 TCCTGAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (21 bp):
TCGACACAAATAAAACAAGTG
Found at i:7589495 original size:19 final size:21
Alignment explanation
Indices: 7589450--7589495 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7589440 CGACACAAAT
* *
7589450 AAAACAAGTGTCGATACATTT
1 AAAACAAGTGTCGATACACTG
7589471 AAAACAAGTGTCGAT-C-CTG
1 AAAACAAGTGTCGATACACTG
7589490 AAAACA
1 AAAACA
7589496 TCGAAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 7 0.30
20 1 0.04
21 15 0.65
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (21 bp):
AAAACAAGTGTCGATACACTG
Found at i:7589795 original size:199 final size:198
Alignment explanation
Indices: 7589455--7590312 Score: 1191
Period size: 199 Copynumber: 4.3 Consensus size: 198
7589445 CAAATAAAAC
* **
7589455 AAGTGTCGATACATTTAAAACAAGTGTCGATCCTGAAAACATCGAAAAACATAATTATAATGTAA
1 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
** *
7589520 TAGGTAAATTATTCATGTAAAATGTCTAAATATACCGGTTTTTTAGAAAACAGGTGTACAAAAAG
66 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAG
* *
7589585 TATCGACACAAATCTAACAAGTGTCGATACTTTTTCTCCAGATTGTATTTCAAAACCAAGTGCAC
131 TATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
7589650 TAAA
196 -AAA
* * *
7589654 AAGTGTCGATACATATATAACAAGTGTCGATCCCAAAAACATTGAAAACCATAATTATAATGTAA
1 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* * * * * *
7589719 TAGGTAAATTA-GCAATATAACCGGTCTAAATATACCGATTTTTGATAAAACAGGTGTACAAACA
66 TAGGTAAATTATTC-ATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAA
* ** * * *
7589783 GTATCGACACAAATAGAACAAGTGTCGATACTTTTGGTCTAGAATGGATTTCAGAACCAAGTGCA
130 GTATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCA
7589848 CATAA
195 CA-AA
* *
7589853 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAA
1 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* *
7589918 TAGGTAAATTATTCATGTAAACAGTCTAAATATATCGGTTTTTGAGAAAACAGGTGTACAAAAAG
66 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAG
*
7589983 TATCTACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
131 TATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
7590048 TAAA
196 -AAA
7590052 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCG-AAAACTATAATTATAATGTA
1 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAAC-ATAATTATAATGTA
* * * * * * * **
7590116 ATAGGTAAATTA-ACAATGTAATCGGTCTAAATGTATCGGTTTATGAGAAAACATGTATACATGA
65 ATAGGTAAATTATTC-ATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAA
* * * * * * * *
7590180 AGTATCGACACAAATACATCAAGTTTCGATACTTTTTTGTCTAGACTATATTTTAAAAACCAAGT
129 AGTATCGACACAAATATAACAAGTGTCGATAC-TTTTTCTCCAGAATGTA-TTTCAAAACCAAGT
7590245 GCACAACA
192 GCACAA-A
* *
7590253 AAGTTTCGATACATTTATAACAATTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
1 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
7590313 CCAAATGTCT
Statistics
Matches: 584, Mismatches: 65, Indels: 18
0.88 0.10 0.03
Matches are distributed among these distances:
198 8 0.01
199 484 0.83
200 17 0.03
201 70 0.12
202 5 0.01
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (198 bp):
AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAG
TATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
AAA
Found at i:7590191 original size:398 final size:400
Alignment explanation
Indices: 7589455--7590312 Score: 1357
Period size: 398 Copynumber: 2.1 Consensus size: 400
7589445 CAAATAAAAC
*
7589455 AAGTGTCGATACATTTAAAACAAGTGTCGATCCTGAAAACATCGAAAAACATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAA
*
7589520 TAGGTAAATTATTCATGTAAAATGTCTAAATATACCGGTTTTTTAGAAAACAGGTGTACAAAAAG
66 TAGGTAAATTATTCATGTAAAATGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAG
* *
7589585 TATCGACACAAATCTAACAAGTGTCGATACTTTTTCTCCAGATTGTATTTCAAAACCAAGTGCAC
131 TATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
*
7589650 TAAAAAGTGTCGATACATATATAACAAGTGTCGATCCCAAAAACATTGAAAACCATAATTATAAT
196 TAAAAAGTGTCGATACATATATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAAT
* * * *
7589715 GTAATAGGTAAATTAGCAATATAACCGGTCTAAATATACCGATTTTTGATAAAACAGGTGTACAA
261 GTAATAGGTAAATTAACAATATAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTATACAA
* * * *
7589780 ACAGTATCGACACAAATAGAACAAGTGTCGATAC-TTTTGGTCTAGAATGGA-TTTCAGAACCAA
326 ACAGTATCGACACAAATACAACAAGTGTCGATACTTTTTGGTCTAGAATAGATTTTAAAAACCAA
7589843 GTGCACATA-A
391 GTGCACA-ACA
7589853 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAA
*
7589918 TAGGTAAATTATTCATGTAAACA-GTCTAAATATATCGGTTTTTGAGAAAACAGGTGTACAAAAA
66 TAGGTAAATTATTCATGTAAA-ATGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAA
*
7589982 GTATCTACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCA
130 GTATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCA
* *
7590047 CTAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAA
195 CTAAAAAGTGTCGATACATATATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAA
* * * * * *
7590112 TGTAATAGGTAAATTAACAATGTAATCGGTCTAAATGTATCGGTTTATGAGAAAACATGTATACA
260 TGTAATAGGTAAATTAACAATATAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTATACA
* * * * * *
7590177 TGA-AGTATCGACACAAATACATCAAGTTTCGATACTTTTTTGTCTAGACTATATTTTAAAAACC
325 -AACAGTATCGACACAAATACAACAAGTGTCGATACTTTTTGGTCTAGAATAGATTTTAAAAACC
7590241 AAGTGCACAACA
389 AAGTGCACAACA
* * * *
7590253 AAGTTTCGATACATTTATAACAATTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAA
7590313 CCAAATGTCT
Statistics
Matches: 422, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
398 332 0.79
399 16 0.04
400 74 0.18
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (400 bp):
AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAA
TAGGTAAATTATTCATGTAAAATGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAG
TATCGACACAAATATAACAAGTGTCGATACTTTTTCTCCAGAATGTATTTCAAAACCAAGTGCAC
TAAAAAGTGTCGATACATATATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAAT
GTAATAGGTAAATTAACAATATAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTATACAA
ACAGTATCGACACAAATACAACAAGTGTCGATACTTTTTGGTCTAGAATAGATTTTAAAAACCAA
GTGCACAACA
Found at i:7593566 original size:23 final size:23
Alignment explanation
Indices: 7593516--7593560 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7593506 TGCCTATTTT
* * *
7593516 ATTATATAAGCGTTACCTATTAC
1 ATTATATAAACGCTACCTAATAC
7593539 ATTATATAAACGCTACCTAATA
1 ATTATATAAACGCTACCTAATA
7593561 TGTTATTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.36
Consensus pattern (23 bp):
ATTATATAAACGCTACCTAATAC
Found at i:7606907 original size:60 final size:60
Alignment explanation
Indices: 7606787--7606907 Score: 136
Period size: 60 Copynumber: 2.0 Consensus size: 60
7606777 ATGAATTTTG
* * * * * * * *
7606787 AGATGAAATTGAAAGATTTAAAAGATTAGAGACTATTTTAGAATGATAGTCATAATTTGA
1 AGATGAAATTGAAAGATTTAAAAGATTAAAAACTAATTTAGAATAAAAATAATAAGTTGA
* *
7606847 AGATTAAATTGAAATATTTACAAA-ATTAAAAACTAATTTAGAATAAAAATAATAAGTTGA
1 AGATGAAATTGAAAGATTTA-AAAGATTAAAAACTAATTTAGAATAAAAATAATAAGTTGA
7606907 A
1 A
7606908 AGCATATAAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 47 0.94
61 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.13, T:0.32
Consensus pattern (60 bp):
AGATGAAATTGAAAGATTTAAAAGATTAAAAACTAATTTAGAATAAAAATAATAAGTTGA
Found at i:7611031 original size:13 final size:13
Alignment explanation
Indices: 7611013--7611056 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
7611003 ATAAATAATA
*
7611013 AAAAAATTACAAT
1 AAAAAACTACAAT
* *
7611026 AAAAAAGTCCAAT
1 AAAAAACTACAAT
*
7611039 AAACAACTACAAT
1 AAAAAACTACAAT
7611052 AAAAA
1 AAAAA
7611057 GTATTAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.68, C:0.14, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAAAACTACAAT
Found at i:7613409 original size:22 final size:21
Alignment explanation
Indices: 7613378--7613443 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
7613368 CTTTCATGTC
7613378 TTTTTTTTCGAACAGTTTTTT
1 TTTTTTTTCGAACAGTTTTTT
* *
7613399 TTTCTTTTTCGAACTGCTATTATT
1 TTT-TTTTTCGAACAG-T-TTTTT
7613423 TTTTTTTTC-AACA-TTTTTT
1 TTTTTTTTCGAACAGTTTTTT
7613442 TT
1 TT
7613444 GTGATGGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 6 0.16
20 1 0.03
21 3 0.08
22 14 0.37
23 7 0.18
24 7 0.18
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (21 bp):
TTTTTTTTCGAACAGTTTTTT
Found at i:7620692 original size:21 final size:21
Alignment explanation
Indices: 7620663--7620724 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
7620653 ATCAGCAAAA
*
7620663 AAATTAATTAAATAAAATATT
1 AAATAAATTAAATAAAATATT
7620684 AAATAAATTAAATACAAAATATT
1 AAATAAATTAAAT--AAAATATT
7620707 -AA-AAA-TATAATAAAATAT
1 AAATAAATTA-AATAAAATAT
7620725 ACCTTAGACA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
19 7 0.19
20 2 0.05
21 18 0.49
22 2 0.05
23 8 0.22
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATAAATTAAATAAAATATT
Found at i:7629599 original size:15 final size:15
Alignment explanation
Indices: 7629581--7629654 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
7629571 GTGAAATTCT
7629581 AATTATTTAAATAAA
1 AATTATTTAAATAAA
*
7629596 AATTATTTATATAAA
1 AATTATTTAAATAAA
*
7629611 AATTCA--TCAAT-AA
1 AATT-ATTTAAATAAA
*
7629624 TA-TATTTAAATAAA
1 AATTATTTAAATAAA
*
7629638 AATTATTTATATAAA
1 AATTATTTAAATAAA
7629653 AA
1 AA
7629655 ATTCATCGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 1 0.02
12 1 0.02
13 7 0.15
14 6 0.13
15 31 0.66
16 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTATTTAAATAAA
Found at i:7629610 original size:19 final size:19
Alignment explanation
Indices: 7629583--7629652 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
7629573 GAAATTCTAA
*
7629583 TTATTTAAATAAAAATTAT
1 TTATATAAATAAAAATTAT
*
7629602 TTATATAAA-AATTCATCAATAAT
1 TTATATAAATAA---A--AATTAT
* *
7629625 ATATTTAAATAAAAATTAT
1 TTATATAAATAAAAATTAT
7629644 TTATATAAA
1 TTATATAAA
7629653 AAATTCATCG
Statistics
Matches: 38, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
18 2 0.05
19 20 0.53
21 2 0.05
23 12 0.32
24 2 0.05
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATATAAATAAAAATTAT
Found at i:7629613 original size:21 final size:21
Alignment explanation
Indices: 7629589--7629654 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
7629579 CTAATTATTT
7629589 AAATAAAAATTATTTATATAA
1 AAATAAAAATTATTTATATAA
** * **
7629610 AAATTCATCAA-TA-ATATATTT
1 AAA-T-AAAAATTATTTATATAA
7629631 AAATAAAAATTATTTATATAA
1 AAATAAAAATTATTTATATAA
7629652 AAA
1 AAA
7629655 ATTCATCGAT
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 19 0.61
22 3 0.10
23 3 0.10
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATAAAAATTATTTATATAA
Found at i:7629631 original size:42 final size:43
Alignment explanation
Indices: 7629580--7629672 Score: 163
Period size: 42 Copynumber: 2.2 Consensus size: 43
7629570 AGTGAAATTC
7629580 TAAT-TATTTAAATAAAAATTATTTATAT-AAAAATTCATCAA
1 TAATATATTTAAATAAAAATTATTTATATAAAAAATTCATCAA
*
7629621 TAATATATTTAAATAAAAATTATTTATATAAAAAATTCATCGA
1 TAATATATTTAAATAAAAATTATTTATATAAAAAATTCATCAA
7629664 TAATATATT
1 TAATATATT
7629673 ATTTTATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
41 4 0.08
42 24 0.49
43 21 0.43
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (43 bp):
TAATATATTTAAATAAAAATTATTTATATAAAAAATTCATCAA
Found at i:7631763 original size:3 final size:3
Alignment explanation
Indices: 7631755--7631795 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
7631745 CATCTCGTTC
*
7631755 TTA TTA TTA TTA -TA TGTA TTA TTA TTA TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
7631796 TTACATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7631803 original size:12 final size:12
Alignment explanation
Indices: 7631755--7631804 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
7631745 CATCTCGTTC
*
7631755 TTATTATTATTA
1 TTATTATTAATA
*
7631767 -TATGTATTATTA
1 TTAT-TATTAATA
7631779 TTATTATTAATA
1 TTATTATTAATA
7631791 TTATT-TTACATA
1 TTATTATTA-ATA
7631803 TT
1 TT
7631805 TGGCAGGCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
11 6 0.18
12 25 0.74
13 3 0.09
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATTATTAATA
Found at i:7644760 original size:14 final size:15
Alignment explanation
Indices: 7644724--7644754 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7644714 ATGAAAAATG
7644724 AAAG-AAAGAAAAAA
1 AAAGAAAAGAAAAAA
7644738 AAAGAAAAGAAAAAA
1 AAAGAAAAGAAAAAA
7644753 AA
1 AA
7644755 TAAAAGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAA
Found at i:7645970 original size:48 final size:48
Alignment explanation
Indices: 7645894--7646463 Score: 637
Period size: 48 Copynumber: 12.3 Consensus size: 48
7645884 CAACTCCCCC
*
7645894 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
7645942 AGATTTGATATTCCCTTTAGAGTAAGTGGAACAAG----TC-T-GCC-
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * * *
7645983 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTATTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
7646031 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
7646079 AGATTTGATATTCCCTTTAGAGTAAGTGGAACAAG----TC-T-GCC-
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
7646120 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
** * *
7646168 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTATCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
** *
7646216 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTATCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
7646264 AGATCTGATATTTCCTTCAGAGTAAGCGGAACAGGTCTCTCTTCTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* *
7646312 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAG----TC-T-ACC-
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * *
7646353 AGATCTGACATTCCCTTCAGAGTAAGTGGAACAGGTCTCT-TTTTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
* * ** * *
7646400 TGATTTGATATTCCCTTCAGAAG-AAGCGGAACATATCTCTTTTTTCCA
1 AGATTTGATATTCCCTTCAG-AGTAAGTGGAACAGGTCTCTCTTCTCCA
* *
7646448 AGGTTTGGTATTCCCT
1 AGATTTGATATTCCCT
7646464 GTGACAGCGG
Statistics
Matches: 445, Mismatches: 54, Indels: 46
0.82 0.10 0.08
Matches are distributed among these distances:
41 94 0.21
42 6 0.01
43 3 0.01
44 6 0.01
45 5 0.01
46 4 0.01
47 33 0.07
48 294 0.66
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (48 bp):
AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
Found at i:7646043 original size:89 final size:90
Alignment explanation
Indices: 7645894--7646420 Score: 597
Period size: 89 Copynumber: 5.8 Consensus size: 90
7645884 CAACTCCCCC
7645894 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
* *
7645959 TAGAGTAAGTGGAACAAGTCTGCC-
66 CAGAGTAAGTGGAACAAGTCTTCCA
* * *
7645983 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTATTCTCAAAGATTTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
*
7646048 CAGAGTAAGTGGAACAGGTCTCTCTTCTCCA
66 CAGAGTAAGTGGAACAAG----TC-T-TCCA
* * * * *
7646079 AGATTTGATATTCCCTTTAGAGTAAGTGGAACAAG----TC-T-GCC-AGATCTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
* *
7646137 CAGAGTAAGCGGAACAGGTCTCTCTTCTCAA
66 CAGAGTAAGTGGAACAAG----TCTTC-C-A
* ** * *
7646168 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTATCTTCTCAAAGATTTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
*
7646233 CAGAGTAAGTGGAACAAATCTATCTTCTCCA
66 CAGAGTAAGTGGAAC-AA---GTC-T-TCCA
* *
7646264 AGATCTGATATTTCCTTCAGAGTAAGCGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
*
7646329 CAGAGTAAGTGGAACAAGTCTACC-
66 CAGAGTAAGTGGAACAAGTCTTCCA
* * *
7646353 AGATCTGACATTCCCTTCAGAGTAAGTGGAACAGGTCTCT-TTTTCCATGATTTGATATTCCCTT
1 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
7646417 CAGA
66 CAGA
7646421 AGAAGCGGAA
Statistics
Matches: 379, Mismatches: 37, Indels: 45
0.82 0.08 0.10
Matches are distributed among these distances:
87 2 0.01
88 28 0.07
89 188 0.50
90 3 0.01
91 2 0.01
92 3 0.01
93 4 0.01
94 2 0.01
95 5 0.01
96 137 0.36
97 3 0.01
98 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (90 bp):
AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
CAGAGTAAGTGGAACAAGTCTTCCA
Found at i:7646145 original size:137 final size:137
Alignment explanation
Indices: 7645894--7646349 Score: 741
Period size: 137 Copynumber: 3.3 Consensus size: 137
7645884 CAACTCCCCC
* *
7645894 AGATCTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCCAAGATTTGATATTCCCTT
*
7645959 TAGAGTAAGTGGAACAAGTCTGCCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTA
66 TAGAGTAAGTGGAACAAGTCTGCCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTC
7646024 TTCTCAA
131 TTCTCAA
*
7646031 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAGGTCTCTCTTCTCCAAGATTTGATATTCCCTT
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCCAAGATTTGATATTCCCTT
7646096 TAGAGTAAGTGGAACAAGTCTGCCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTC
66 TAGAGTAAGTGGAACAAGTCTGCCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTC
7646161 TTCTCAA
131 TTCTCAA
* * *
7646168 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAATCTATCTTCTCAAAGATTTGATATTCCCTT
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCCAAGATTTGATATTCCCTT
* * * *
7646233 CAGAGTAAGTGGAACAAATCTATCTTCTCCAAGATCTGATATTTCCTTCAGAGTAAGCGGAACAG
66 TAGAGTAAGTGGAAC-AA---GTC-T-GCC-AGATCTGATATTCCCTTCAGAGTAAGCGGAACAG
*
7646298 GTCTCTCTTCTCCA
124 GTCTCTCTTCTCAA
7646312 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
7646350 ACCAGATCTG
Statistics
Matches: 300, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
137 210 0.70
138 2 0.01
141 2 0.01
142 1 0.00
143 2 0.01
144 83 0.28
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (137 bp):
AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCCAAGATTTGATATTCCCTT
TAGAGTAAGTGGAACAAGTCTGCCAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTC
TTCTCAA
Found at i:7646707 original size:3 final size:3
Alignment explanation
Indices: 7646699--7646739 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
7646689 CATCTCGTTC
*
7646699 TTA TTA TTA TTA -TA TGTA TTA TTA TTA TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
7646740 TTACATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7646747 original size:12 final size:12
Alignment explanation
Indices: 7646699--7646748 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
7646689 CATCTCGTTC
*
7646699 TTATTATTATTA
1 TTATTATTAATA
*
7646711 -TATGTATTATTA
1 TTAT-TATTAATA
7646723 TTATTATTAATA
1 TTATTATTAATA
7646735 TTATT-TTACATA
1 TTATTATTA-ATA
7646747 TT
1 TT
7646749 TGGCAGGCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
11 6 0.18
12 25 0.74
13 3 0.09
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATTATTAATA
Found at i:7650969 original size:22 final size:22
Alignment explanation
Indices: 7650944--7651021 Score: 138
Period size: 22 Copynumber: 3.5 Consensus size: 22
7650934 TGACTATTAT
7650944 GTCCCGAAGGACCACTAGATAC
1 GTCCCGAAGGACCACTAGATAC
7650966 GTCCCGAAGGACCACTAGATAC
1 GTCCCGAAGGACCACTAGATAC
* *
7650988 GTCCCGAATGACCACTGGATAC
1 GTCCCGAAGGACCACTAGATAC
7651010 GTCCCGAAGGAC
1 GTCCCGAAGGAC
7651022 TAATATACCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.29, C:0.32, G:0.24, T:0.14
Consensus pattern (22 bp):
GTCCCGAAGGACCACTAGATAC
Found at i:7651735 original size:2 final size:2
Alignment explanation
Indices: 7651728--7651752 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7651718 TACAAATTCC
7651728 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7651753 CTAACTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7652527 original size:19 final size:19
Alignment explanation
Indices: 7652503--7652553 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
7652493 TTTAAATGAG
*
7652503 TGCATCGATGCACTGCTTA
1 TGCATCGATGCACTCCTTA
7652522 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
7652541 TGCATCGATGCAC
1 TGCATCGATGCAC
7652554 CTTCAACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (19 bp):
TGCATCGATGCACTCCTTA
Found at i:7662121 original size:19 final size:21
Alignment explanation
Indices: 7662089--7662135 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
7662079 ATTTAATATA
* *
7662089 TATATATATATATG-GATAAT
1 TATAAATATATATGAGAAAAT
*
7662109 T-TAAATATTTATGAGAAAAT
1 TATAAATATATATGAGAAAAT
7662129 TATAAAT
1 TATAAAT
7662136 TATCATCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 10 0.45
20 7 0.32
21 5 0.23
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (21 bp):
TATAAATATATATGAGAAAAT
Found at i:7670520 original size:26 final size:26
Alignment explanation
Indices: 7670486--7670537 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7670476 TGTTATTTAA
7670486 GTAAAACTCGAGATTTAATTCAGTTG
1 GTAAAACTCGAGATTTAATTCAGTTG
7670512 GTAAAACTCGAGATTTAATTCAGTTG
1 GTAAAACTCGAGATTTAATTCAGTTG
7670538 ATTCATGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (26 bp):
GTAAAACTCGAGATTTAATTCAGTTG
Found at i:7673404 original size:2 final size:2
Alignment explanation
Indices: 7673397--7673467 Score: 110
Period size: 2 Copynumber: 36.0 Consensus size: 2
7673387 ACTTGTTCGC
7673397 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7673439 AT AT AT AT AT AT GAT A- AT GT AT AT -T AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
7673468 TTTCAATGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
1 2 0.03
2 60 0.94
3 2 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7673759 original size:23 final size:23
Alignment explanation
Indices: 7673704--7673759 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
7673694 AAGTGTTTGT
* **
7673704 TTTTATCTGTGTTTATGACACGG
1 TTTTATATGTGTTTATGACACAA
*
7673727 TTGTTCATATGTTTTTATGACACAA
1 TT-TT-ATATGTGTTTATGACACAA
7673752 TTTTATAT
1 TTTTATAT
7673760 TTTGTTAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
23 6 0.22
24 4 0.15
25 17 0.63
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (23 bp):
TTTTATATGTGTTTATGACACAA
Found at i:7674519 original size:23 final size:23
Alignment explanation
Indices: 7674493--7674540 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7674483 ATAAAGTACA
*
7674493 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
7674516 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7674539 AT
1 AT
7674541 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7675325 original size:23 final size:23
Alignment explanation
Indices: 7675299--7675361 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
7675289 ATATAACCAC
7675299 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
7675322 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
7675345 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7675362 GTTACCTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7675824 original size:39 final size:39
Alignment explanation
Indices: 7675770--7675855 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
7675760 CAAGTTGTAG
* *
7675770 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTGA
* *
7675809 ATTTTGATTTCCTTTTGCTTGACACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTGA
7675848 ATTTTGAT
1 ATTTTGAT
7675856 GAGCATCGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGACACCATATGAGATTTGA
Found at i:7676137 original size:18 final size:18
Alignment explanation
Indices: 7676114--7676150 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7676104 CGAAATATAT
7676114 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
7676132 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
7676150 A
1 A
7676151 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:7676571 original size:25 final size:25
Alignment explanation
Indices: 7676537--7676587 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7676527 TTTTTCCAAA
*
7676537 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
7676562 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
7676587 T
1 T
7676588 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:7676877 original size:21 final size:22
Alignment explanation
Indices: 7676852--7676903 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
7676842 ACACTTTACA
*
7676852 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
7676875 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
7676898 ATATAA
1 ATATAA
7676904 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:7676888 original size:23 final size:23
Alignment explanation
Indices: 7676862--7676924 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7676852 ATATAACCAC
7676862 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
7676885 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
7676908 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7676925 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7677322 original size:25 final size:25
Alignment explanation
Indices: 7677265--7677330 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
7677255 TCACTCAAAG
*
7677265 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
7677290 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
7677315 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
7677331 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:7680061 original size:183 final size:183
Alignment explanation
Indices: 7679753--7680305 Score: 1034
Period size: 183 Copynumber: 3.0 Consensus size: 183
7679743 GTACATATAA
*
7679753 ATATTTATACCGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
1 ATATTTATAACGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
* *
7679818 TGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTTCAATATGGACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAC
*
7679883 AATATTAAAAAGTGTCGATATAGGTTGTAGAACTATTCGCGCATAAAACCGGT
131 AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
7679936 ATATTTATAACGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
1 ATATTTATAACGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
* *
7680001 TGTTGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAG
66 TGTCGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAC
*
7680066 AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACTGGT
131 AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
*
7680119 ATATTTATATCGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
1 ATATTTATAACGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
7680184 TGTCGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAC
7680249 AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
131 AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
7680302 ATAT
1 ATAT
7680306 ATGGACATAA
Statistics
Matches: 359, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 359 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (183 bp):
ATATTTATAACGGTTATATTATAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAA
TGTCGACACTTTTTTAAAACGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACAC
AATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGT
Found at i:7680355 original size:78 final size:78
Alignment explanation
Indices: 7680226--7680383 Score: 316
Period size: 78 Copynumber: 2.0 Consensus size: 78
7680216 TTTTCTTCCA
7680226 ATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGC
1 ATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGC
7680291 ATAAAACCGGTAT
66 ATAAAACCGGTAT
7680304 ATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGC
1 ATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGC
7680369 ATAAAACCGGTAT
66 ATAAAACCGGTAT
7680382 AT
1 AT
7680384 TTATACCGGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (78 bp):
ATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGC
ATAAAACCGGTAT
Found at i:7681855 original size:3 final size:3
Alignment explanation
Indices: 7681847--7681900 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
7681837 ACTTGTTTGG
* * *
7681847 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
*
7681895 TTC ATC
1 ATC ATC
7681901 GTCAGCTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:7681864 original size:12 final size:12
Alignment explanation
Indices: 7681847--7681904 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
7681837 ACTTGTTTGG
* *
7681847 ATCATCATCTTC
1 ATCATCGTCATC
*
7681859 ATCATCATCATC
1 ATCATCGTCATC
7681871 ATCATCGTCATC
1 ATCATCGTCATC
7681883 ATCATCGTCATC
1 ATCATCGTCATC
*
7681895 TTCATCGTCA
1 ATCATCGTCA
7681905 GCTTCATCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.05, T:0.36
Consensus pattern (12 bp):
ATCATCGTCATC
Found at i:7681870 original size:18 final size:18
Alignment explanation
Indices: 7681847--7681915 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
7681837 ACTTGTTTGG
* *
7681847 ATCATCATCTTCATCATC
1 ATCATCATCATCTTCATC
*
7681865 ATCATCATCATCGTCATC
1 ATCATCATCATCTTCATC
*
7681883 ATCATCGTCATCTTCATC
1 ATCATCATCATCTTCATC
* * *
7681901 GTCAGCTTCATCTTC
1 ATCATCATCATCTTC
7681916 TGAGACCGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.38
Consensus pattern (18 bp):
ATCATCATCATCTTCATC
Found at i:7681909 original size:12 final size:12
Alignment explanation
Indices: 7681860--7681912 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
7681850 ATCATCTTCA
* *
7681860 TCATCATCATCA
1 TCATCGTCATCT
*
7681872 TCATCGTCATCA
1 TCATCGTCATCT
7681884 TCATCGTCATCT
1 TCATCGTCATCT
*
7681896 TCATCGTCAGCT
1 TCATCGTCATCT
7681908 TCATC
1 TCATC
7681913 TTCTGAGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.23, C:0.34, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:7684121 original size:395 final size:397
Alignment explanation
Indices: 7683376--7684345 Score: 1863
Period size: 395 Copynumber: 2.4 Consensus size: 397
7683366 TTTAAATTAG
7683376 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAAC-ATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
7683441 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
65 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
7683506 TGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
130 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
7683571 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGG
195 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGG
7683636 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
260 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
7683701 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
325 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
7683766 -AAAAAAA
390 AAAAAAAA
*
7683773 TATCGACACAAAC-TATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATAA
1 TATCGACACAAACATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAA
*
7683837 TTGTAGCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATC
7683902 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
131 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
*
7683967 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAATCGGT
196 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGT
7684032 ATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
261 ATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
7684097 GATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGA
326 GATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-
7684162 AAAAAAAA
390 AAAAAAAA
7684170 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAAC-ATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
7684235 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
65 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
7684300 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
130 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
7684346 GGCCATATTG
Statistics
Matches: 563, Mismatches: 6, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
395 371 0.66
397 33 0.06
399 159 0.28
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (397 bp):
TATCGACACAAACATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAA
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATC
GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
AAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGT
ATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
GATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGA
AAAAAAA
Found at i:7684290 original size:200 final size:199
Alignment explanation
Indices: 7683376--7684345 Score: 1865
Period size: 199 Copynumber: 4.9 Consensus size: 199
7683366 TTTAAATTAG
*
7683376 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
7683441 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
7683506 TGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
7683571 AAAA
196 AAAA
7683575 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
7683640 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
7683705 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
7683769 AAAA
196 AAAA
7683773 TATCGACACAAAC--TATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
*
7683836 ATTGTAGCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
7683901 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
7683966 AAAA
196 AAAA
*
7683970 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
7684035 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
7684100 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AAA
7684165 AAAAA
195 AAAAA
*
7684170 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
7684235 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
7684300 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
7684346 GGCCATATTG
Statistics
Matches: 760, Mismatches: 7, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
196 175 0.23
197 20 0.03
198 20 0.03
199 363 0.48
200 182 0.24
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAA
Found at i:7684510 original size:19 final size:19
Alignment explanation
Indices: 7684463--7684512 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
7684453 ATTATATTCA
*
7684463 TATACAAAAATATAAATCG
1 TATACAAAATTATAAATCG
*
7684482 TATACAAAATTATAAATCT
1 TATACAAAATTATAAATCG
7684501 TATACAAAATTA
1 TATACAAAATTA
7684513 ACCCTACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (19 bp):
TATACAAAATTATAAATCG
Found at i:7686344 original size:33 final size:33
Alignment explanation
Indices: 7686307--7686372 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7686297 CATCTTAATA
*
7686307 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
7686340 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
7686373 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:7686431 original size:21 final size:21
Alignment explanation
Indices: 7686406--7686447 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7686396 CCCCTTATGC
*
7686406 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTGTATCTACGACT
*
7686427 CTCTCGAGTTTATCTACGACT
1 CTCTCGAGTGTATCTACGACT
7686448 TGATCAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.38
Consensus pattern (21 bp):
CTCTCGAGTGTATCTACGACT
Found at i:7688712 original size:17 final size:18
Alignment explanation
Indices: 7688690--7688733 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
7688680 AATATATCCG
7688690 TTATCATTT-TACCGGTT
1 TTATCATTTATACCGGTT
7688707 TTATCATTTTGATACCGGTT
1 TTATCA-TTT-ATACCGGTT
7688727 TTATCAT
1 TTATCAT
7688734 ATTTTTACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.25
18 3 0.12
19 1 0.04
20 14 0.58
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.52
Consensus pattern (18 bp):
TTATCATTTATACCGGTT
Found at i:7688751 original size:20 final size:19
Alignment explanation
Indices: 7688696--7688742 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
7688686 TCCGTTATCA
7688696 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
7688715 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
7688736 TTTTACC
1 TTTTACC
7688743 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:7688890 original size:20 final size:20
Alignment explanation
Indices: 7688864--7688909 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
7688854 CACTTTTAAA
7688864 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
7688883 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
7688904 TTTACC
1 TTTACC
7688910 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:7690920 original size:17 final size:17
Alignment explanation
Indices: 7690897--7690939 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
7690887 AAATATAATG
7690897 TGATAAAAATAT-ATAT
1 TGATAAAAATATCATAT
7690913 TAGATAAAAA-ATCATAT
1 T-GATAAAAATATCATAT
*
7690930 TTATAAAAAT
1 TGATAAAAAT
7690940 TATTTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (17 bp):
TGATAAAAATATCATAT
Found at i:7692036 original size:2 final size:2
Alignment explanation
Indices: 7692029--7692073 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7692019 ATATTCTAAT
7692029 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7692071 TA T
1 TA T
7692074 TAGTTAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7692327 original size:2 final size:2
Alignment explanation
Indices: 7692320--7692357 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7692310 ATATTCTAAT
7692320 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7692358 TAGTTAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7692359 original size:21 final size:21
Alignment explanation
Indices: 7692320--7692359 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7692310 ATATTCTAAT
7692320 TATATATATATATATATTATA
1 TATATATATATATATATTATA
7692341 TATATATATATATATATTA
1 TATATATATATATATATTA
7692360 GTTAAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TATATATATATATATATTATA
Found at i:7692648 original size:17 final size:18
Alignment explanation
Indices: 7692628--7692661 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7692618 ATTTTATCAA
7692628 TTAAATAAT-TTAATTAC
1 TTAAATAATATTAATTAC
*
7692645 TTAAGTAATATTAATTA
1 TTAAATAATATTAATTA
7692662 AAATCATCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TTAAATAATATTAATTAC
Found at i:7696797 original size:17 final size:18
Alignment explanation
Indices: 7696763--7696805 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
7696753 TACTAGCATA
*
7696763 ATAA-TAATGATTTTAAT
1 ATAATTAATGATTTGAAT
*
7696780 ATTATTAAT-ATTTGAAT
1 ATAATTAATGATTTGAAT
7696797 ATAATTAAT
1 ATAATTAAT
7696806 TATGTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
ATAATTAATGATTTGAAT
Done.