Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 37
Found at i:7702702 original size:20 final size:22
Alignment explanation
Indices: 7702673--7702715 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
7702663 CCATAACAAA
*
7702673 TTTATTATTT-TTTTTAT-TTT
1 TTTATAATTTATTTTTATGTTT
7702693 TTTATAATTTATTTTTATGTTT
1 TTTATAATTTATTTTTATGTTT
7702715 T
1 T
7702716 CTTTTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTATAATTTATTTTTATGTTT
Found at i:7702702 original size:27 final size:28
Alignment explanation
Indices: 7702671--7702725 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
7702661 TTCCATAACA
7702671 AATTTATTATTT-T-TTTTATTTTTTTAT
1 AATTTATT-TTTATGTTTTATTTTTTTAT
*
7702698 AATTTATTTTTATGTTTTCTTTTTTTAT
1 AATTTATTTTTATGTTTTATTTTTTTAT
7702726 TCTTAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 3 0.12
27 9 0.36
28 13 0.52
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (28 bp):
AATTTATTTTTATGTTTTATTTTTTTAT
Found at i:7702709 original size:21 final size:20
Alignment explanation
Indices: 7702673--7702715 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
7702663 CCATAACAAA
* *
7702673 TTTATTATTTTTTTTATTTT
1 TTTATAATTTTTTTTATGTT
7702693 TTTATAATTTATTTTTATGTT
1 TTTATAATTT-TTTTTATGTT
7702714 TT
1 TT
7702716 CTTTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTATAATTTTTTTTATGTT
Found at i:7702761 original size:23 final size:23
Alignment explanation
Indices: 7702735--7702785 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
7702725 TTCTTAATAA
* *
7702735 TTCTGTCTTTTTGGCATTTCTTC
1 TTCTGTCTTTTTAGCATGTCTTC
7702758 TTCTGTCTTTTTAGCATGTCTTC
1 TTCTGTCTTTTTAGCATGTCTTC
7702781 TTCTG
1 TTCTG
7702786 CCTCTATGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.06, C:0.22, G:0.14, T:0.59
Consensus pattern (23 bp):
TTCTGTCTTTTTAGCATGTCTTC
Found at i:7703155 original size:25 final size:25
Alignment explanation
Indices: 7703122--7703177 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
7703112 ATGGTCATTG
* **
7703122 TGTGATCTTAAGTGGCTAGTTTTCT
1 TGTGTTCTTAAGTAACTAGTTTTCT
7703147 TGTGTTCTTAAGTAACTAGTTTTCT
1 TGTGTTCTTAAGTAACTAGTTTTCT
7703172 TGTGTT
1 TGTGTT
7703178 TAGGAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.16, C:0.11, G:0.21, T:0.52
Consensus pattern (25 bp):
TGTGTTCTTAAGTAACTAGTTTTCT
Found at i:7703321 original size:13 final size:13
Alignment explanation
Indices: 7703303--7703327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7703293 TATAACAGAT
7703303 TTTAAATTTTAAA
1 TTTAAATTTTAAA
7703316 TTTAAATTTTAA
1 TTTAAATTTTAA
7703328 CTTATAACTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTAAATTTTAAA
Found at i:7707203 original size:24 final size:20
Alignment explanation
Indices: 7707150--7707196 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
7707140 TGGTTGGAAG
7707150 CCTAGGTTATTGAGAGAAAT
1 CCTAGGTTATTGAGAGAAAT
7707170 CCTAGGTTATTGAGAGAAAT
1 CCTAGGTTATTGAGAGAAAT
7707190 CCTAGGT
1 CCTAGGT
7707197 ACCTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (20 bp):
CCTAGGTTATTGAGAGAAAT
Found at i:7716246 original size:6 final size:6
Alignment explanation
Indices: 7716231--7716321 Score: 94
Period size: 6 Copynumber: 15.3 Consensus size: 6
7716221 TTTGTTGAAA
* * * *
7716231 GAAA-G GAAAGG GAAAGG GAAAGA GAAAGA GAAAGA GAAAGA GAAAGG
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG
* * * * *
7716278 GAAAGG GAAAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GA
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GA
7716322 GAGGTAATTT
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
5 4 0.05
6 78 0.95
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:7716620 original size:21 final size:21
Alignment explanation
Indices: 7716587--7716626 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7716577 ACCGAAAATA
* *
7716587 TAAAAAAGTTAATGTTTTAAG
1 TAAAAAAGATAATATTTTAAG
*
7716608 TAAAAATGATAATATTTTA
1 TAAAAAAGATAATATTTTA
7716627 GATAATTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (21 bp):
TAAAAAAGATAATATTTTAAG
Found at i:7717123 original size:2 final size:2
Alignment explanation
Indices: 7717116--7717143 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7717106 TTAACAAATT
7717116 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7717144 CATACACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7724103 original size:14 final size:14
Alignment explanation
Indices: 7724084--7724113 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7724074 AAATACTTTT
*
7724084 AAAAGTATTTTTAA
1 AAAAGTATATTTAA
7724098 AAAAGTATATTTAA
1 AAAAGTATATTTAA
7724112 AA
1 AA
7724114 TTTAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
AAAAGTATATTTAA
Found at i:7725148 original size:20 final size:20
Alignment explanation
Indices: 7725125--7725170 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7725115 TGTAGGGCTG
* *
7725125 GAGCAGGAAATTGACGTGGT
1 GAGCAGGAAATTCACGGGGT
*
7725145 GAGCAGGGAATTCACGGGGT
1 GAGCAGGAAATTCACGGGGT
7725165 GAGCAG
1 GAGCAG
7725171 ATAAAGATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.43, T:0.15
Consensus pattern (20 bp):
GAGCAGGAAATTCACGGGGT
Found at i:7725314 original size:32 final size:30
Alignment explanation
Indices: 7725242--7725314 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 30
7725232 GTCTCGGCGT
* * *
7725242 TTTCTTCAC-TTTGGGTGGATTACTCGACT
1 TTTCTTCACATTAGGGTGGAATACTCGACC
*
7725271 TCTTCTGCACATTGAGGGTGGAATACTCGACGC
1 T-TTCTTCACATT-AGGGTGGAATACTCGAC-C
7725304 TTTCTTCACAT
1 TTTCTTCACAT
7725315 GGGAGGGGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 1 0.03
30 7 0.20
31 2 0.06
32 24 0.69
33 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (30 bp):
TTTCTTCACATTAGGGTGGAATACTCGACC
Found at i:7728066 original size:42 final size:42
Alignment explanation
Indices: 7728008--7728205 Score: 306
Period size: 42 Copynumber: 4.7 Consensus size: 42
7727998 ATATAATTAC
*
7728008 TATTATTAAATTATTAAAGTTAAATCATTAAAGTTAAATAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
* * *
7728050 TATTATTAAATCATTAAAGTTACATCATTAAAGTCAAGTAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
* *
7728092 TATTATTAAATCATTAAAGTTAAATTATTAAAGTTAAGTAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
* * *
7728134 TATTATTAAATTATTTAATTTAAATCATTAAAGTTAAATAAT
1 TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
*
7728176 TATTATTAAATCATTAAAGTTAAATAATTA
1 TATTATTAAATCATTAAAGTTAAATCATTA
7728206 TTATTATATC
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 140 1.00
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (42 bp):
TATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
Found at i:7728227 original size:42 final size:42
Alignment explanation
Indices: 7728181--7728340 Score: 239
Period size: 42 Copynumber: 3.8 Consensus size: 42
7728171 ATAATTATTA
*
7728181 TTAAATCATTAAAGTTAAATAATTATTATTATATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAG
* *
7728223 TTAAATCATTATAGTTAAGTAATTATTATTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAG
* * * * *
7728265 TAAAATCATTAAAGTTAAGTAAATATTATTAAATTATTAAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAG
*
7728307 TTAAATCATTAAATTTAAATAATTATTATTAAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAAT
7728341 ATGTACTCGA
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 106 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (42 bp):
TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAG
Found at i:7728246 original size:70 final size:70
Alignment explanation
Indices: 7728111--7728275 Score: 240
Period size: 70 Copynumber: 2.4 Consensus size: 70
7728101 ATCATTAAAG
* * * * *
7728111 TTAAATTATTAAAGTTAAGTAATTATTATTAAATTATTTAATTTAAATCATTAAAGTTAAATAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
7728176 TATTA
66 TATTA
* * *
7728181 TTAAATCATTAAAGTTAAATAATTATTATTATATCATTAAAGTTAAATCATTATAGTTAAGTAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
7728246 TATTA
66 TATTA
* *
7728251 TTAAATCATTAAAGTAAAATCATTA
1 TTAAATCATTAAAGTTAAATAATTA
7728276 AAGTTAAGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (70 bp):
TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAATAAT
TATTA
Found at i:7728340 original size:28 final size:28
Alignment explanation
Indices: 7728013--7728331 Score: 229
Period size: 28 Copynumber: 11.4 Consensus size: 28
7728003 ATTACTATTA
*
7728013 TTAAATTATTAAAGTTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATCATTAAAG
* *
7728041 TTAAATAATTATTA-TTAAATCATTAAAG
1 TTAAATCATTA-AAGTTAAATCATTAAAG
* * * * *
7728069 TTACATCATTAAAGTCAAGTAATTATTA-
1 TTAAATCATTAAAGTTAAATCATTA-AAG
*
7728097 TTAAATCATTAAAGTTAAATTATTAAAG
1 TTAAATCATTAAAGTTAAATCATTAAAG
* * * * * *
7728125 TTAAGTAATTATTA-TTAAATTATTTAAT
1 TTAAATCATTA-AAGTTAAATCATTAAAG
* *
7728153 TTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATCATTA-AAG
* *
7728181 TTAAATCATTAAAGTTAAATAATTATTA-
1 TTAAATCATTAAAGTTAAATCATTA-AAG
* *
7728209 TTATATCATTAAAGTTAAATCATTATAG
1 TTAAATCATTAAAGTTAAATCATTAAAG
* * *
7728237 TTAAGTAATTATTA-TTAAATCATTAAAG
1 TTAAATCATTA-AAGTTAAATCATTAAAG
* * * * *
7728265 TAAAATCATTAAAGTTAAGTAAATATTA-
1 TTAAATCATTAAAGTTAAATCATTA-AAG
* * *
7728293 TTAAATTATTAAATTTAAATCATTAAAT
1 TTAAATCATTAAAGTTAAATCATTAAAG
*
7728321 TTAAATAATTA
1 TTAAATCATTA
7728332 TTATTAAATA
Statistics
Matches: 231, Mismatches: 48, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
27 7 0.03
28 218 0.94
29 6 0.03
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (28 bp):
TTAAATCATTAAAGTTAAATCATTAAAG
Found at i:7731638 original size:84 final size:81
Alignment explanation
Indices: 7731524--7731708 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 81
7731514 TTGTTTTTAT
* * *
7731524 TTTTGCTTTTACTTTGTTTTATGCTATTTTGTGTTCAAT-TTTCGATGGATA-ATTGCCCATTAT
1 TTTTACTTTTACTTTATTTTATGCTATTTTGTGTT--ATGTTT---TAGATAGATTGCCCATTAT
**
7731587 CACATGCATTATTACCCTTTC
61 CACATGCATTATTACAATTTC
* * * * *
7731608 TTTTACTTTTGCTTTATTTTATGTTGTTTTGTGTTATGTTTTAGATAGATTGTCTATTATCACAT
1 TTTTACTTTTACTTTATTTTATGCTATTTTGTGTTATGTTTTAGATAGATTGCCCATTATCACAT
7731673 GCATTATTACAATTTC
66 GCATTATTACAATTTC
*
7731689 TTTTACTTTTTCTTTATTTT
1 TTTTACTTTTACTTTATTTT
7731709 GTGCGGGCCA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
80 5 0.06
81 48 0.55
82 2 0.02
83 3 0.03
84 30 0.34
ACGTcount: A:0.19, C:0.14, G:0.11, T:0.57
Consensus pattern (81 bp):
TTTTACTTTTACTTTATTTTATGCTATTTTGTGTTATGTTTTAGATAGATTGCCCATTATCACAT
GCATTATTACAATTTC
Found at i:7732958 original size:2 final size:2
Alignment explanation
Indices: 7732953--7732977 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7732943 TATGAAGATA
7732953 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7732978 CACAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7745925 original size:30 final size:28
Alignment explanation
Indices: 7745889--7745951 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 28
7745879 TCCGAAAAAT
7745889 CACCGGT-GACTGATATATTTACCAATCTAA
1 CACCGGTAGACT-ATAT-TTT-CCAATCTAA
*
7745919 CACCGGTCAGACTATATTTTCCGATCTAA
1 CACCGGT-AGACTATATTTTCCAATCTAA
7745948 CACC
1 CACC
7745952 CTTAGCAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 4 0.13
32 4 0.13
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (28 bp):
CACCGGTAGACTATATTTTCCAATCTAA
Found at i:7746205 original size:10 final size:10
Alignment explanation
Indices: 7746190--7746219 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7746180 TTCATCACAC
7746190 CAAATTCTCT
1 CAAATTCTCT
*
7746200 CAAATTCTTT
1 CAAATTCTCT
7746210 CAAATTCTCT
1 CAAATTCTCT
7746220 TATAATCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:7746277 original size:9 final size:9
Alignment explanation
Indices: 7746265--7746316 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
7746255 AAATATTTTG
7746265 TATTTAATT
1 TATTTAATT
*
7746274 TATTTAA-G
1 TATTTAATT
7746282 TATTTAATT
1 TATTTAATT
7746291 TATTTAA--
1 TATTTAATT
* *
7746298 TATTTTACT
1 TATTTAATT
7746307 TATTTAATT
1 TATTTAATT
7746316 T
1 T
7746317 TTTTGCAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.17
8 7 0.20
9 22 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TATTTAATT
Found at i:7746286 original size:17 final size:17
Alignment explanation
Indices: 7746264--7746313 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
7746254 TAAATATTTT
7746264 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
7746281 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
* *
7746298 -TATTTTACTTATTTAA
1 GTATTTAATTTATTTAA
7746314 TTTTTTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:7746309 original size:16 final size:16
Alignment explanation
Indices: 7746273--7746318 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
7746263 TGTATTTAAT
* *
7746273 TTATTTAAGTATTTAAT
1 TTATTTAA-TATTTTAC
7746290 TTATTTAATATTTTAC
1 TTATTTAATATTTTAC
7746306 TTATTTAAT-TTTT
1 TTATTTAATATTTT
7746319 TTGCAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATTTAATATTTTAC
Found at i:7750145 original size:23 final size:22
Alignment explanation
Indices: 7750101--7750145 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7750091 GAATGTCAAG
*
7750101 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
7750123 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
7750146 AAATTGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:7751841 original size:103 final size:103
Alignment explanation
Indices: 7751616--7751833 Score: 427
Period size: 103 Copynumber: 2.1 Consensus size: 103
7751606 GTCGAGGGTC
7751616 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
7751681 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
7751719 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAATATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
7751784 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
7751822 TATGTGGTCCTT
1 TATGTGGTCCTT
7751834 ATGGACATTA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 114 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:7751907 original size:23 final size:23
Alignment explanation
Indices: 7751849--7751909 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
7751839 CATTATTATA
*
7751849 TGGCACTACGGTACAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
7751872 CGGCACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTACG
*
7751895 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
7751910 TTTATATGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:7751917 original size:23 final size:23
Alignment explanation
Indices: 7751840--7751917 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
7751830 CCTTATGGAC
* *
7751840 ATTATTATATGGCACTACGGTACA
1 ATTA-TATGTGGCACTACGGTGCA
* * *
7751864 ATTCTACGCGGCACTACGGTGCA
1 ATTATATGTGGCACTACGGTGCA
* *
7751887 ATTCTATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
7751910 TTTATATG
1 ATTATATG
7751918 AGCTGTGGTT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 41 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:7755166 original size:23 final size:22
Alignment explanation
Indices: 7755118--7755166 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7755108 ACAGAATGTC
7755118 AAGG-GGGAACCGATACCCCCA
1 AAGGAGGGAACCGATACCCCCA
* *
7755139 CAGGAGGGAACCGATTCCCCCTA
1 AAGGAGGGAACCGATACCCCC-A
7755162 AAGGA
1 AAGGA
7755167 AATTATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 5 0.22
ACGTcount: A:0.33, C:0.31, G:0.29, T:0.08
Consensus pattern (22 bp):
AAGGAGGGAACCGATACCCCCA
Found at i:7756809 original size:103 final size:103
Alignment explanation
Indices: 7756629--7756846 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
7756619 GTCGAGGGTC
* *
7756629 TATGTGGTCCTTTGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
7756694 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
7756732 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
7756797 TTGATCCTTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
7756835 TATGTGGTCCTT
1 TATGTGGTCCTT
7756847 ATGGACATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:7756914 original size:23 final size:23
Alignment explanation
Indices: 7756862--7756922 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
7756852 CATTATTATA
7756862 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* * *
7756885 CGACACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTACG
*
7756908 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
7756923 TTTATATGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:7768898 original size:17 final size:16
Alignment explanation
Indices: 7768876--7768909 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7768866 TAAAAACAGT
7768876 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
7768893 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
7768909 A
1 A
7768910 TCCTAACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:7772113 original size:23 final size:22
Alignment explanation
Indices: 7772065--7772113 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7772055 ACAGAATGTC
7772065 AAGG-GGGAACCGATACCCCCA
1 AAGGAGGGAACCGATACCCCCA
* *
7772086 CAGGAGGGAACCGATTCCCCCTA
1 AAGGAGGGAACCGATACCCCC-A
7772109 AAGGA
1 AAGGA
7772114 AATTATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 5 0.22
ACGTcount: A:0.33, C:0.31, G:0.29, T:0.08
Consensus pattern (22 bp):
AAGGAGGGAACCGATACCCCCA
Found at i:7773745 original size:23 final size:23
Alignment explanation
Indices: 7773715--7773766 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
7773705 ATTATTATAT
*
7773715 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGATGCAATTCTACGC
* *
7773738 GGCACTACGATGCAATTCTATGT
1 GGCACTACGATGCAATTCTACGC
7773761 GGCACT
1 GGCACT
7773767 TCAGTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGATGCAATTCTACGC
Found at i:7777883 original size:24 final size:24
Alignment explanation
Indices: 7777846--7777906 Score: 95
Period size: 25 Copynumber: 2.5 Consensus size: 24
7777836 TGATGTTTAG
**
7777846 AAAAAAAAAATTTTGTGATGAAAT
1 AAAAAAAAGTTTTTGTGATGAAAT
7777870 AAAAAAAAGTTTTTTGTGATGAAAT
1 AAAAAAAAG-TTTTTGTGATGAAAT
7777895 AAAAAAAAGTTT
1 AAAAAAAAGTTT
7777907 GGTGTTTAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 11 0.32
25 23 0.68
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (24 bp):
AAAAAAAAGTTTTTGTGATGAAAT
Found at i:7777903 original size:25 final size:25
Alignment explanation
Indices: 7777856--7777906 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7777846 AAAAAAAAAA
7777856 TTTTGTGATGAAATAAAAAAAAGTT
1 TTTTGTGATGAAATAAAAAAAAGTT
7777881 TTTTGTGATGAAATAAAAAAAAGTT
1 TTTTGTGATGAAATAAAAAAAAGTT
7777906 T
1 T
7777907 GGTGTTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (25 bp):
TTTTGTGATGAAATAAAAAAAAGTT
Found at i:7781464 original size:11 final size:11
Alignment explanation
Indices: 7781448--7781473 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7781438 TTATTCATTG
7781448 GACAATATAAA
1 GACAATATAAA
7781459 GACAATATAAA
1 GACAATATAAA
7781470 GACA
1 GACA
7781474 GAATGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.15
Consensus pattern (11 bp):
GACAATATAAA
Found at i:7798137 original size:16 final size:16
Alignment explanation
Indices: 7798116--7798146 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7798106 TTTTACAATT
7798116 AATATAAATTAATAAA
1 AATATAAATTAATAAA
*
7798132 AATATAAATTTATAA
1 AATATAAATTAATAA
7798147 GTTCTCTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAATTAATAAA
Found at i:7803117 original size:27 final size:27
Alignment explanation
Indices: 7803087--7803139 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
7803077 ACAATGATAA
*
7803087 AATGAATTTGAAGTAAGGAAGGTGCAC
1 AATGAATTTGAAATAAGGAAGGTGCAC
7803114 AATGAATTTGAAATAAGGAAGGTGCA
1 AATGAATTTGAAATAAGGAAGGTGCA
7803140 TCCATCTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.06, G:0.28, T:0.23
Consensus pattern (27 bp):
AATGAATTTGAAATAAGGAAGGTGCAC
Found at i:7804886 original size:14 final size:14
Alignment explanation
Indices: 7804867--7804894 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7804857 CTCTTTACTC
7804867 TCTTTATCATAATA
1 TCTTTATCATAATA
7804881 TCTTTATCATAATA
1 TCTTTATCATAATA
7804895 GAGTGGAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
TCTTTATCATAATA
Found at i:7809173 original size:19 final size:19
Alignment explanation
Indices: 7809146--7809209 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
7809136 TCTTCTACAT
*
7809146 TTACTCCAAAAATCTTTAA
1 TTACCCCAAAAATCTTTAA
7809165 TTACCCCAAAAATC-----
1 TTACCCCAAAAATCTTTAA
7809179 --ACCCCAAAAATCTTTAA
1 TTACCCCAAAAATCTTTAA
*
7809196 TTACCCCTAAAATC
1 TTACCCCAAAAATC
7809210 AGGATCAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
12 12 0.33
19 24 0.67
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (19 bp):
TTACCCCAAAAATCTTTAA
Found at i:7809189 original size:31 final size:31
Alignment explanation
Indices: 7809151--7809210 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
7809141 TACATTTACT
7809151 CCAAAAATCTTTAATTACCCCAAAAATCACC
1 CCAAAAATCTTTAATTACCCCAAAAATCACC
*
7809182 CCAAAAATCTTTAATTACCCCTAAAATCA
1 CCAAAAATCTTTAATTACCCCAAAAATCA
7809211 GGATCAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (31 bp):
CCAAAAATCTTTAATTACCCCAAAAATCACC
Found at i:7810911 original size:25 final size:25
Alignment explanation
Indices: 7810880--7810929 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7810870 AGTGGTTAAG
7810880 GAATTGCTTCTCAACCATTTGATAA
1 GAATTGCTTCTCAACCATTTGATAA
*
7810905 GAATTGCTTCTCAACCGTTTGATAA
1 GAATTGCTTCTCAACCATTTGATAA
7810930 TGAACTCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (25 bp):
GAATTGCTTCTCAACCATTTGATAA
Found at i:7812443 original size:26 final size:24
Alignment explanation
Indices: 7812412--7812469 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 24
7812402 TTACTTGAAA
*
7812412 GTATTTAAATATAATGTTTTTTTTT
1 GTATTTAAATATAAT-TTTTTATTT
* *
7812437 GTTATTTAAGTTTAATTTTTTATTT
1 G-TATTTAAATATAATTTTTTATTT
7812462 G-ATTTAAA
1 GTATTTAAA
7812470 ATCTGATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 6 0.21
25 10 0.36
26 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (24 bp):
GTATTTAAATATAATTTTTTATTT
Found at i:7815247 original size:18 final size:19
Alignment explanation
Indices: 7815224--7815259 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7815214 ACAGGTGCAT
*
7815224 CTGGTGGTGGT-GGAGGGG
1 CTGGTGGTCGTGGGAGGGG
7815242 CTGGTGGTCGTGGGAGGG
1 CTGGTGGTCGTGGGAGGG
7815260 ACCGTGGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.06, C:0.08, G:0.64, T:0.22
Consensus pattern (19 bp):
CTGGTGGTCGTGGGAGGGG
Found at i:7817873 original size:18 final size:18
Alignment explanation
Indices: 7817836--7817874 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7817826 AAACTAAAGA
*
7817836 GTTTTGGAGTGTATTGAT
1 GTTTTGGAGTGTATTAAT
*
7817854 GTTTTGGAGTGTCTTAAT
1 GTTTTGGAGTGTATTAAT
7817872 GTT
1 GTT
7817875 CTAGTAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.31, T:0.51
Consensus pattern (18 bp):
GTTTTGGAGTGTATTAAT
Found at i:7819662 original size:3 final size:3
Alignment explanation
Indices: 7819656--7819738 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
7819646 GTTTTTGTTG
7819656 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7819704 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7819739 TATTGGAGGG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7821054 original size:16 final size:16
Alignment explanation
Indices: 7821033--7821065 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7821023 GTTCGATTTA
7821033 ATTTAATTTAATTTTG
1 ATTTAATTTAATTTTG
*
7821049 ATTTAATTTTATTTTG
1 ATTTAATTTAATTTTG
7821065 A
1 A
7821066 GTATACGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
ATTTAATTTAATTTTG
Found at i:7822327 original size:21 final size:19
Alignment explanation
Indices: 7822278--7822330 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
7822268 ATGCAATACC
7822278 GACTATCGCAACGAACTTG
1 GACTATCGCAACGAACTTG
*
7822297 GAATAAATCGCAACGCGAACTTG
1 GACT--ATCGCAA--CGAACTTG
7822320 GACTATCGCAA
1 GACTATCGCAA
7822331 TGCTTGCGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 3 0.11
21 14 0.50
23 11 0.39
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.19
Consensus pattern (19 bp):
GACTATCGCAACGAACTTG
Found at i:7823474 original size:2 final size:2
Alignment explanation
Indices: 7823467--7823516 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
7823457 AGATATGTGG
7823467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7823509 AT AT AT AT
1 AT AT AT AT
7823517 TCTTCGTGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7824052 original size:2 final size:2
Alignment explanation
Indices: 7824045--7824084 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7824035 TGTTTGACAT
7824045 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7824085 AAAGATGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7824459 original size:2 final size:2
Alignment explanation
Indices: 7824452--7824487 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7824442 AATATCATTG
7824452 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7824488 CATGTGGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7827733 original size:21 final size:20
Alignment explanation
Indices: 7827615--7827733 Score: 69
Period size: 21 Copynumber: 5.8 Consensus size: 20
7827605 AAATGACCAA
***
7827615 CAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
7827635 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
7827655 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
7827676 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
7827697 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
7827717 CAAGAATCGCAACGCGA
1 CAA-AATCGCAACGCGA
7827734 ACACATAAAT
Statistics
Matches: 73, Mismatches: 21, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
19 1 0.01
20 30 0.41
21 42 0.58
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:7827762 original size:20 final size:20
Alignment explanation
Indices: 7827721--7827929 Score: 208
Period size: 20 Copynumber: 10.4 Consensus size: 20
7827711 GATTTTCAAG
* *
7827721 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
7827741 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
7827761 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
7827781 AATAGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7827801 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7827821 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7827841 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
7827861 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
* *
7827881 AATCGCAACG-ATAATCCGGA
1 AATCGCAACGCGT-ATCCGTA
* * *
7827901 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
7827921 AATCACAAC
1 AATCGCAAC
7827930 ACTGAAATTT
Statistics
Matches: 159, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
19 1 0.01
20 156 0.98
21 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:7828666 original size:24 final size:24
Alignment explanation
Indices: 7828622--7828668 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7828612 AAATTTGGTC
*
7828622 TTGGTCAATATCTGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
7828646 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
7828669 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:7828860 original size:12 final size:12
Alignment explanation
Indices: 7828843--7828867 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7828833 ATATAATCCT
7828843 GAAGAAGAAAAA
1 GAAGAAGAAAAA
7828855 GAAGAAGAAAAA
1 GAAGAAGAAAAA
7828867 G
1 G
7828868 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:7831229 original size:53 final size:54
Alignment explanation
Indices: 7831166--7831394 Score: 230
Period size: 53 Copynumber: 4.2 Consensus size: 54
7831156 GCAACGAGAG
*
7831166 AATCGCAATGCGAAATGAAAATCCCAA-C-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAAGCAATGAAAATCGCAATGC-GAAATGAA
*
7831219 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAAAATCGCAA-GC--AATGAAAATCGCAATGCGAAATGAA
7831271 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGC-GAAATGAAAATCGCAA-GC--AATGAAAATCGCAATGCGAAATGAA
*
7831329 AATCGCAA--CG--A-GAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA-GC---AATGAAAATCGCAATGCGAAATGAA
*
7831382 AATCGCATTGCGA
1 AATCGCAATGCGA
7831395 TTCTCTCGTT
Statistics
Matches: 156, Mismatches: 5, Indels: 27
0.83 0.03 0.14
Matches are distributed among these distances:
52 26 0.17
53 97 0.62
55 7 0.04
56 2 0.01
57 1 0.01
58 23 0.15
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (54 bp):
AATCGCAATGCGAAATGAAAATCGCAAGCAATGAAAATCGCAATGCGAAATGAA
Found at i:7831235 original size:19 final size:19
Alignment explanation
Indices: 7831166--7831394 Score: 290
Period size: 19 Copynumber: 12.7 Consensus size: 19
7831156 GCAACGAGAG
7831166 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7831185 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
7831199 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
7831219 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7831238 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7831257 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
7831271 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
7831291 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7831310 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7831329 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
7831343 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
7831363 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7831382 AATCGCATTGCGA
1 AATCGCAATGCGA
7831395 TTCTCTCGTT
Statistics
Matches: 185, Mismatches: 7, Indels: 36
0.81 0.03 0.16
Matches are distributed among these distances:
14 32 0.17
15 2 0.01
16 3 0.02
17 7 0.04
19 99 0.54
20 42 0.23
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:7831259 original size:72 final size:72
Alignment explanation
Indices: 7831166--7831394 Score: 415
Period size: 72 Copynumber: 3.2 Consensus size: 72
7831156 GCAACGAGAG
* *
7831166 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGCGGAAATGAAAATCGCAATGC
7831230 GAAATGAA
65 GAAATGAA
7831238 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
7831303 AAATGAA
66 AAATGAA
7831310 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
7831375 AAATGAA
66 AAATGAA
*
7831382 AATCGCATTGCGA
1 AATCGCAATGCGA
7831395 TTCTCTCGTT
Statistics
Matches: 153, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
72 152 0.99
73 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (72 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
AAATGAA
Found at i:7831452 original size:54 final size:52
Alignment explanation
Indices: 7831384--7831501 Score: 218
Period size: 54 Copynumber: 2.2 Consensus size: 52
7831374 GAAATGAAAA
7831384 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
7831437 TCCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 T-CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
7831490 TCGCATTGCGAT
1 TCGCATTGCGAT
7831502 AGTCATTTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
52 11 0.17
53 20 0.31
54 33 0.52
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.44
Consensus pattern (52 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
Found at i:7831509 original size:19 final size:19
Alignment explanation
Indices: 7831403--7831501 Score: 136
Period size: 19 Copynumber: 5.4 Consensus size: 19
7831393 GATTCTCTCG
7831403 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
7831423 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
*
7831443 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
7831457 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7831476 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7831495 TTGCGAT
1 TTGCGAT
7831502 AGTCATTTTT
Statistics
Matches: 72, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 5 0.07
17 6 0.08
18 3 0.04
19 26 0.36
20 26 0.36
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7831627 original size:14 final size:14
Alignment explanation
Indices: 7831608--7831658 Score: 84
Period size: 14 Copynumber: 3.6 Consensus size: 14
7831598 CATCAATTAC
7831608 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
7831622 ACAAATCATCTTTT
1 ACAAATCAACTTTT
*
7831636 ACAAATCATCTTTT
1 ACAAATCAACTTTT
7831650 ACAAATCAA
1 ACAAATCAA
7831659 TTAAACAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:7833624 original size:19 final size:19
Alignment explanation
Indices: 7833582--7833735 Score: 139
Period size: 19 Copynumber: 8.6 Consensus size: 19
7833572 TAGTTTACTT
* *
7833582 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
*
7833602 TCGCAACGCGAAATGAGAA
1 TCGCAACGCGAAATGAAAA
* **
7833621 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
7833640 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
7833659 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
7833673 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
7833692 TCGCAA--C--AA-GAGAA
1 TCGCAACGCGAAATGAAAA
7833706 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
7833725 TCGCAATGCGA
1 TCGCAACGCGA
7833736 TTTTGGTTTC
Statistics
Matches: 109, Mismatches: 15, Indels: 21
0.75 0.10 0.14
Matches are distributed among these distances:
14 18 0.17
15 2 0.02
16 6 0.06
17 6 0.06
18 2 0.02
19 63 0.58
20 12 0.11
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:7833684 original size:33 final size:33
Alignment explanation
Indices: 7833600--7833730 Score: 172
Period size: 33 Copynumber: 3.8 Consensus size: 33
7833590 CGAAACTTAA
* *
7833600 AATCGCAACGCGAAATGAGAATCGCAACGAGAAACCAA
1 AATCGCAACGCGAAATGAAAATCGCAAC--G--A-CAG
7833638 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
* * *
7833671 AATCGCAATGCGAAATGAAAATCGCAACAAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
7833704 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
7833731 TGCGATTTTG
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
33 58 0.67
34 1 0.01
36 1 0.01
38 27 0.31
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:7833727 original size:52 final size:51
Alignment explanation
Indices: 7833599--7833735 Score: 132
Period size: 52 Copynumber: 2.6 Consensus size: 51
7833589 ACGAAACTTA
* * * **
7833599 AAATCGCAACGCGAAATGAGAATCGCAACGAGAAACCAAAATCGCAACGCG
1 AAATCGCAACGCGAAATGAAAATCGCAATGCGAAACCAAAATCGCAACAAG
* ** * * **
7833650 AAAT-GAAAATCGCAACGACAGAATCGCAATGCGAAATGAAAATCGCAACAAG
1 AAATCGCAACGCGAAATGA-A-AATCGCAATGCGAAACCAAAATCGCAACAAG
7833702 AGAATCGCAACGCGAAATGAAAATCGCAATGCGA
1 A-AATCGCAACGCGAAATGAAAATCGCAATGCGA
7833736 TTTTGGTTTC
Statistics
Matches: 65, Mismatches: 17, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
50 9 0.14
51 4 0.06
52 39 0.60
53 4 0.06
54 9 0.14
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (51 bp):
AAATCGCAACGCGAAATGAAAATCGCAATGCGAAACCAAAATCGCAACAAG
Found at i:7833785 original size:19 final size:19
Alignment explanation
Indices: 7833731--7833826 Score: 103
Period size: 19 Copynumber: 5.3 Consensus size: 19
7833721 AAAATCGCAA
7833731 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
7833750 TGCGATTTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
*
7833764 TGCGATTCTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
**
7833783 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
7833802 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
7833822 TGCGA
1 TGCGA
7833827 AAGTAAACTA
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
14 11 0.17
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 37 0.58
20 12 0.19
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:7834083 original size:93 final size:93
Alignment explanation
Indices: 7833924--7834239 Score: 623
Period size: 93 Copynumber: 3.4 Consensus size: 93
7833914 TCAGGGTATT
7833924 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
7833989 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
7834017 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
7834082 TATTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
7834110 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
7834175 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
7834203 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
7834240 AAGCAATCTA
Statistics
Matches: 221, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 221 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (93 bp):
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACAC
Found at i:7835956 original size:20 final size:20
Alignment explanation
Indices: 7835925--7836021 Score: 100
Period size: 20 Copynumber: 5.2 Consensus size: 20
7835915 TTTTGGTTGA
7835925 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
***
7835945 AATGACTGTCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
7835965 AAATGAAAATCGCAAC--GAG
1 -AATGAAAATCGCAACGAGAG
*
7835984 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
7835999 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
7836019 AAT
1 AAT
7836022 CGCAACGCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
14 9 0.15
16 4 0.06
17 2 0.03
19 15 0.24
20 20 0.32
21 12 0.19
ACGTcount: A:0.46, C:0.18, G:0.25, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:7835977 original size:21 final size:21
Alignment explanation
Indices: 7835923--7835987 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
7835913 TCTTTTGGTT
7835923 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
***
7835944 G-AATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
7835964 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
7835985 GAA
1 GAA
7835988 TCGCAACGCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.48, C:0.15, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:7835991 original size:14 final size:14
Alignment explanation
Indices: 7835972--7836028 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7835962 GAGAAATGAA
7835972 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7835986 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7836005 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7836019 AATCGCAACG
1 AATCGCAACG
7836029 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7836004 original size:33 final size:33
Alignment explanation
Indices: 7835923--7836044 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
7835913 TCTTTTGGTT
*
7835923 GAAATGAAAATCGCAACGAGAGAATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
7835964 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7835997 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7836030 GAAATG-AAATCGCAA
1 GAAATGAAAATCGCAA
7836045 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
32 9 0.11
33 40 0.50
35 7 0.09
38 1 0.01
40 1 0.01
41 22 0.28
ACGTcount: A:0.46, C:0.19, G:0.25, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7836080 original size:14 final size:14
Alignment explanation
Indices: 7836061--7836117 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7836051 TTTGGTTTCG
7836061 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7836075 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TCT
7836092 CGCATTGCGATTCTCT
1 CG--TTGCGATTCTCT
7836108 CGTTGCGATT
1 CGTTGCGATT
7836118 TTCATTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
16 7 0.19
17 7 0.19
19 6 0.17
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7836093 original size:33 final size:33
Alignment explanation
Indices: 7836045--7836124 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
7836035 GAAATCGCAA
** *
7836045 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
7836078 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
7836111 TGCGATTTTCATTT
1 TGCGATTTTCATTT
7836125 TTCTCGTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:7836130 original size:21 final size:21
Alignment explanation
Indices: 7836105--7836178 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
7836095 ATTGCGATTC
7836105 TCTCGTTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCATTTT
**
7836126 TCTCGTTGCAGATAGTCA-TTT
1 TCTCGTTGC-GATTTTCATTTT
* *
7836147 TCACGTTGCGATTTTCATTTA
1 TCTCGTTGCGATTTTCATTTT
7836168 TCTCGTTGCGA
1 TCTCGTTGCGA
7836179 CTCTTCTGCA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 6 0.14
21 32 0.73
22 6 0.14
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (21 bp):
TCTCGTTGCGATTTTCATTTT
Found at i:7836300 original size:33 final size:33
Alignment explanation
Indices: 7836258--7836361 Score: 181
Period size: 33 Copynumber: 3.2 Consensus size: 33
7836248 AATACTAACT
7836258 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
*
7836291 TGAAAATCGCAACGAGAGAATAACAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
7836324 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
7836357 TGAAA
1 TGAAA
7836362 TCTAAGTGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:7836304 original size:19 final size:19
Alignment explanation
Indices: 7836280--7836337 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 19
7836270 CGAGAGAATA
7836280 GCAACGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
*
7836299 GCAA--CGAGA-GAATAA--
1 GCAACGCGAAATGAA-AATC
7836314 -CAACGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
7836332 GCAACG
1 GCAACG
7836338 AGAGAATCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
14 3 0.10
16 9 0.30
17 9 0.30
19 9 0.30
ACGTcount: A:0.48, C:0.21, G:0.22, T:0.09
Consensus pattern (19 bp):
GCAACGCGAAATGAAAATC
Found at i:7836766 original size:20 final size:20
Alignment explanation
Indices: 7836741--7836933 Score: 246
Period size: 20 Copynumber: 9.6 Consensus size: 20
7836731 CTTTAAAAAT
7836741 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7836761 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
7836781 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
*
7836802 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
7836822 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
7836842 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7836862 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7836882 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
7836902 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
7836922 CGCGTTGCGATT
1 CGCGTTGCGATT
7836934 CTGGAAAATC
Statistics
Matches: 152, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
20 134 0.88
21 18 0.12
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7848048 original size:49 final size:49
Alignment explanation
Indices: 7847987--7848085 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
7847977 TTAAACATCA
7847987 TGTTATAAATATATGTATAAAGGAAATAGTGTACTTAAAATATTAAATT
1 TGTTATAAATATATGTATAAAGGAAATAGTGTACTTAAAATATTAAATT
*
7848036 TGTTATATATATATGTATAAAGGAAATAGTGTACTTAAAATATTAAATT
1 TGTTATAAATATATGTATAAAGGAAATAGTGTACTTAAAATATTAAATT
7848085 T
1 T
7848086 TGTGAAACTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.40
Consensus pattern (49 bp):
TGTTATAAATATATGTATAAAGGAAATAGTGTACTTAAAATATTAAATT
Found at i:7848319 original size:29 final size:29
Alignment explanation
Indices: 7848286--7848343 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
7848276 ACATCCATAT
*
7848286 GTAAACTATAATTGATCCAATAAATAAGC
1 GTAAACAATAATTGATCCAATAAATAAGC
7848315 GTAAACAATAATTGATCCAATAAATAAGC
1 GTAAACAATAATTGATCCAATAAATAAGC
7848344 AATTCATACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (29 bp):
GTAAACAATAATTGATCCAATAAATAAGC
Found at i:7859177 original size:17 final size:18
Alignment explanation
Indices: 7859150--7859183 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7859140 TCATGAAAAG
*
7859150 TGGGAAAATATCAATAAC
1 TGGGAAAATATAAATAAC
7859168 TGGG-AAATATAAATAA
1 TGGGAAAATATAAATAA
7859184 GTTGAACGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.24
Consensus pattern (18 bp):
TGGGAAAATATAAATAAC
Found at i:7869331 original size:16 final size:16
Alignment explanation
Indices: 7869310--7869342 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7869300 GGATCAGATG
7869310 TTTTTCATTTTAAATT
1 TTTTTCATTTTAAATT
7869326 TTTTTCATTTTAAATT
1 TTTTTCATTTTAAATT
7869342 T
1 T
7869343 AAATTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTCATTTTAAATT
Found at i:7870458 original size:21 final size:21
Alignment explanation
Indices: 7870419--7870458 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7870409 GATACTAATG
* *
7870419 TGACAATTCACAGTGCTGACA
1 TGACAATTCACAATACTGACA
7870440 TGACAATTCACAATACTGA
1 TGACAATTCACAATACTGA
7870459 TGTAACAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (21 bp):
TGACAATTCACAATACTGACA
Found at i:7871086 original size:25 final size:25
Alignment explanation
Indices: 7871052--7871179 Score: 143
Period size: 25 Copynumber: 5.1 Consensus size: 25
7871042 GATACTAGTC
7871052 ATAGTACTTTGTATAAATGTTGATG
1 ATAGTACTTTGTATAAATGTTGATG
*
7871077 ATAGTACTTTGTATAAGTGTTGATG
1 ATAGTACTTTGTATAAATGTTGATG
* * * * ** *
7871102 ATA-TAGTTATATTTAGATACT-AGTC
1 ATAGTACTT-TGTATAAATGTTGA-TG
7871127 ATAGTACTTTGTATAAATGTTGATG
1 ATAGTACTTTGTATAAATGTTGATG
*
7871152 ATAGTACTTTGTATAAGTGTTGATG
1 ATAGTACTTTGTATAAATGTTGATG
7871177 ATA
1 ATA
7871180 CGACTATTTG
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
24 5 0.06
25 72 0.88
26 5 0.06
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.44
Consensus pattern (25 bp):
ATAGTACTTTGTATAAATGTTGATG
Found at i:7871153 original size:75 final size:75
Alignment explanation
Indices: 7871030--7871179 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
7871020 CGATGTTTCT
7871030 TAGTTATATTTAGATACTAGTCATAGTACTTTGTATAAATGTTGATGATAGTACTTTGTATAAGT
1 TAGTTATATTTAGATACTAGTCATAGTACTTTGTATAAATGTTGATGATAGTACTTTGTATAAGT
7871095 GTTGATGATA
66 GTTGATGATA
7871105 TAGTTATATTTAGATACTAGTCATAGTACTTTGTATAAATGTTGATGATAGTACTTTGTATAAGT
1 TAGTTATATTTAGATACTAGTCATAGTACTTTGTATAAATGTTGATGATAGTACTTTGTATAAGT
7871170 GTTGATGATA
66 GTTGATGATA
7871180 CGACTATTTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (75 bp):
TAGTTATATTTAGATACTAGTCATAGTACTTTGTATAAATGTTGATGATAGTACTTTGTATAAGT
GTTGATGATA
Found at i:7873110 original size:23 final size:22
Alignment explanation
Indices: 7873076--7873133 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
7873066 TATAGTTTTT
*
7873076 ATTTTTAGTATTTTTATATTTA
1 ATTTTTAATATTTTTATATTTA
7873098 ATTTTTGAATATTTTTATATTTA
1 ATTTTT-AATATTTTTATATTTA
*
7873121 GAATTTTAA-ATTT
1 -ATTTTTAATATTT
7873134 AAAATAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 10 0.31
23 17 0.53
24 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTTTTAATATTTTTATATTTA
Found at i:7875382 original size:2 final size:2
Alignment explanation
Indices: 7875375--7875421 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7875365 TGTATTAATA
7875375 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7875417 AT AT A
1 AT AT A
7875422 AGTGGTTGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7875855 original size:22 final size:22
Alignment explanation
Indices: 7875820--7875891 Score: 108
Period size: 22 Copynumber: 3.3 Consensus size: 22
7875810 GAGGAAAAGT
* *
7875820 GAATTTCATTTATTCTATGATG
1 GAATTCCATCTATTCTATGATG
*
7875842 GAATTCCATCTATTTTATGATG
1 GAATTCCATCTATTCTATGATG
7875864 GAATTCCATCTATTCTATGATG
1 GAATTCCATCTATTCTATGATG
*
7875886 AAATTC
1 GAATTC
7875892 AATTCCCTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.44
Consensus pattern (22 bp):
GAATTCCATCTATTCTATGATG
Found at i:7876449 original size:231 final size:225
Alignment explanation
Indices: 7876020--7876462 Score: 642
Period size: 231 Copynumber: 1.9 Consensus size: 225
7876010 CATATATTCG
*
7876020 GGTCGGGTCGGGTCAATTTTTTGAAGTGTGATATTCGGGTCGGGTCGAGTTTGGGTTTAGGGTGA
1 GGTCGGGTCGGGTCAATTTTTTGAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTGA
* * * *
7876085 AAAATACCCGACCCGAAAATATATATAATTTTATCTTATATATTTAAGAATAATTACAATAATAC
66 AAAATACCCGACCCCAAAAAATATATAATTTTACCTTATATATTTAAGAATAATTACAACAATAC
7876150 CCTTCTATATATATATATATATTTCAATTAAGTCATTGTTTTTATTGAATAAAAATAATTTTTTT
131 CCTTCTATATATATATATATATTTCAATTAAGTCATTGTTTTTATTGAATAAAAATAATTTTTTT
*
7876215 ATTATTTCGGGTCGGGTGAAACTTTATTTT
196 ATTATTTCAGGTCGGGTGAAACTTTATTTT
* ** * * *
7876245 GGTCGGGTCTGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGTGTCGGGTTCGGGTTTAGGGTGA
1 GGTCGGGTCGGGTCAATTTTTTGAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTG-
*
7876310 AAAATACTCAACCCGACCTGACCCAAAAAATATATAATTTTACCTTATATATTTAGGAATAATTA
65 AAAA-A-T--ACCCGA-C---CCCAAAAAATATATAATTTTACCTTATATATTTAAGAATAATTA
*
7876375 CAACAATACTCC-TCTATATATA-AT-T-TTTTTCAATTAAGTCATTGTTTTTATTGAATAAAAA
122 CAACAATAC-CCTTCTATATATATATATATATTTCAATTAAGTCATTGTTTTTATTGAATAAAAA
7876436 TAATTTTTTTATTATTTCAGGTCGGGT
186 TAATTTTTTTATTATTTCAGGTCGGGT
7876463 CGGGTTTCTA
Statistics
Matches: 194, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
225 57 0.29
226 4 0.02
227 1 0.01
228 1 0.01
230 6 0.03
231 62 0.32
232 1 0.01
233 2 0.01
234 58 0.30
235 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (225 bp):
GGTCGGGTCGGGTCAATTTTTTGAAGTGTGATATTCGGGTCGGGTCGAGTTCGGGTTTAGGGTGA
AAAATACCCGACCCCAAAAAATATATAATTTTACCTTATATATTTAAGAATAATTACAACAATAC
CCTTCTATATATATATATATATTTCAATTAAGTCATTGTTTTTATTGAATAAAAATAATTTTTTT
ATTATTTCAGGTCGGGTGAAACTTTATTTT
Found at i:7879206 original size:21 final size:21
Alignment explanation
Indices: 7879177--7879223 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7879167 ATTCTGACTA
7879177 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
7879198 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
7879219 TCGCA
1 TCGCA
7879224 ATGTGAATAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:7879312 original size:20 final size:20
Alignment explanation
Indices: 7879231--7879313 Score: 121
Period size: 20 Copynumber: 4.1 Consensus size: 20
7879221 GCAATGTGAA
7879231 TACGTAAATCGCAACGCGAAT
1 TACGTAAATCGCAACGCG-AT
** *
7879252 TTGGAAAATCGCAACGCGAT
1 TACGTAAATCGCAACGCGAT
7879272 TACGTAAATCGCAACGCGAT
1 TACGTAAATCGCAACGCGAT
*
7879292 TACGTAAATCGCAACGAGAT
1 TACGTAAATCGCAACGCGAT
7879312 TA
1 TA
7879314 TGACTATCGC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 40 0.73
21 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (20 bp):
TACGTAAATCGCAACGCGAT
Found at i:7879811 original size:15 final size:15
Alignment explanation
Indices: 7879791--7879847 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
7879781 AACCGGGTAT
7879791 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
**
7879806 CGGGTACCCGTAAAATC
1 CGGGTACCCG-ATTA-C
*
7879823 TGGGTACCCGATTAC
1 CGGGTACCCGATTAC
7879838 CGGGTACCCG
1 CGGGTACCCG
7879848 TAACATCCGG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:7879833 original size:32 final size:32
Alignment explanation
Indices: 7879791--7879859 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
7879781 AACCGGGTAT
7879791 CGGGTACCCGATTACCGGGTACCCGTAAAATC
1 CGGGTACCCGATTACCGGGTACCCGTAAAATC
* *
7879823 TGGGTACCCGATTACCGGGTACCCGTAACATC
1 CGGGTACCCGATTACCGGGTACCCGTAAAATC
7879855 CGGGT
1 CGGGT
7879860 CGGGACACGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (32 bp):
CGGGTACCCGATTACCGGGTACCCGTAAAATC
Found at i:7879859 original size:17 final size:17
Alignment explanation
Indices: 7879805--7879859 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
7879795 TACCCGATTA
7879805 CCGGGTACCCGTAAAAT
1 CCGGGTACCCGTAAAAT
* **
7879822 CTGGGTACCCG-ATTA-
1 CCGGGTACCCGTAAAAT
*
7879837 CCGGGTACCCGTAACAT
1 CCGGGTACCCGTAAAAT
7879854 CCGGGT
1 CCGGGT
7879860 CGGGACACGG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 10 0.33
16 4 0.13
17 16 0.53
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (17 bp):
CCGGGTACCCGTAAAAT
Found at i:7880705 original size:24 final size:24
Alignment explanation
Indices: 7880678--7880731 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7880668 GTATTCGAAA
7880678 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
7880702 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
7880726 TTTGAT
1 TTTGAT
7880732 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:7883303 original size:33 final size:33
Alignment explanation
Indices: 7883261--7883449 Score: 227
Period size: 33 Copynumber: 5.5 Consensus size: 33
7883251 TTGCAACGCG
7883261 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
* * *
7883294 GAAATGAAAATCGCAACGACAAAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
* *
7883327 GAAACT-AAAATCACAACGCGGAAATGACTATCGCAATGC
1 GAAA-TGAAAATCGCAA--C-GAGA-GA--ATCGCAATGC
*
7883366 GAAATGAAAATCGCAACGAGAGAATCACAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
* * *
7883399 GAAATAAAAATCGCAACGAGGGAATCGCAAAGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
7883432 GAAATGAAAATCGCAACG
1 GAAATGAAAATCGCAACG
7883450 CGAATTTAGT
Statistics
Matches: 133, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
33 98 0.74
34 1 0.01
35 3 0.02
36 6 0.05
37 2 0.02
38 1 0.01
39 22 0.17
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.12
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:7883368 original size:72 final size:66
Alignment explanation
Indices: 7883254--7883449 Score: 223
Period size: 72 Copynumber: 2.9 Consensus size: 66
7883244 ATGTTTATTG
* * *
7883254 CAACGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGACAAAAT
1 CAACGC-GAAATAAAAATCACAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGACAAAAT
*
7883319 CG
65 CA
*
7883321 CAACGCGAAACT-AAAATCACAACGCGGAAATGACTATCGCAATGCGAAATGAAAATCGCAACGA
1 CAACGCGAAA-TAAAAATCACAACGAGG----GA--ATCGCAATGCGAAATGAAAATCGCAACGA
* *
7883385 GAGAATCA
59 CAAAATCA
* * *
7883393 CAATGCGAAATAAAAATCGCAACGAGGGAATCGCAAAGCGAAATGAAAATCGCAACG
1 CAACGCGAAATAAAAATCACAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACG
7883450 CGAATTTAGT
Statistics
Matches: 111, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
66 43 0.39
67 7 0.06
68 2 0.02
70 2 0.02
71 1 0.01
72 56 0.50
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.11
Consensus pattern (66 bp):
CAACGCGAAATAAAAATCACAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGACAAAATC
A
Found at i:7883443 original size:105 final size:105
Alignment explanation
Indices: 7883261--7883451 Score: 303
Period size: 105 Copynumber: 1.8 Consensus size: 105
7883251 TTGCAACGCG
* * *
7883261 GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACG
1 GAAATGAAAATCGCAACGAGAGAATCACAATGCGAAATAAAAATCGCAACGACAAAATCGCAAAG
7883326 CGAAACTAAAATCACAACGCGGAAATGACTATCGCAATGC
66 CGAAACTAAAATCACAACGCGGAAATGACTATCGCAATGC
***
7883366 GAAATGAAAATCGCAACGAGAGAATCACAATGCGAAATAAAAATCGCAACGAGGGAATCGCAAAG
1 GAAATGAAAATCGCAACGAGAGAATCACAATGCGAAATAAAAATCGCAACGACAAAATCGCAAAG
*
7883431 CGAAA-TGAAAATCGCAACGCG
66 CGAAACT-AAAATCACAACGCG
7883452 AATTTAGTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
104 1 0.01
105 77 0.99
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.12
Consensus pattern (105 bp):
GAAATGAAAATCGCAACGAGAGAATCACAATGCGAAATAAAAATCGCAACGACAAAATCGCAAAG
CGAAACTAAAATCACAACGCGGAAATGACTATCGCAATGC
Found at i:7883471 original size:19 final size:19
Alignment explanation
Indices: 7883449--7883523 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
7883439 AAATCGCAAC
*
7883449 GCGAATTT-AGTTTCGCGTT
1 GCGAATTTCA-TTTCGCATT
*
7883468 GCGATTTTCATTTCGCATT
1 GCGAATTTCATTTCGCATT
*
7883487 GCG-A-TTC-TCTCG--TT
1 GCGAATTTCATTTCGCATT
*
7883501 GCGATTTTCATTTCGCATT
1 GCGAATTTCATTTCGCATT
7883520 GCGA
1 GCGA
7883524 TAGTCATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
14 5 0.11
16 7 0.16
17 7 0.16
19 24 0.55
20 1 0.02
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (19 bp):
GCGAATTTCATTTCGCATT
Found at i:7883532 original size:19 final size:19
Alignment explanation
Indices: 7883459--7883524 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
7883449 GCGAATTTAG
*
7883459 TTTCGCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
7883478 TTTCGCATTGCGA--TTC-
1 TTTCGCATTGCGATTTTCA
*
7883494 TCTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
7883511 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
7883525 AGTCATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 6 0.15
16 7 0.18
17 7 0.18
19 19 0.49
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:7883640 original size:13 final size:12
Alignment explanation
Indices: 7883622--7883651 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
7883612 TTATGTTCAC
7883622 ATCAATTAAACAA
1 ATCAATTAAAC-A
7883635 ATCAATTAAACA
1 ATCAATTAAACA
7883647 ATCAA
1 ATCAA
7883652 AAAATAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (12 bp):
ATCAATTAAACA
Found at i:7885062 original size:21 final size:21
Alignment explanation
Indices: 7884996--7885062 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7884986 TTGAATCGGG
*
7884996 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
7885016 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
7885038 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
7885059 CTCT
1 CTCT
7885063 CGAGGAATTA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:7886972 original size:20 final size:20
Alignment explanation
Indices: 7886942--7887003 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
7886932 TTTTGGTTGA
7886942 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
** *
7886962 AATGACTATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
7886981 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
7887001 AAT
1 AAT
7887004 CACAACGCGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 16 0.46
20 19 0.54
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.13
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:7886983 original size:39 final size:38
Alignment explanation
Indices: 7886940--7887046 Score: 127
Period size: 33 Copynumber: 2.9 Consensus size: 38
7886930 TCTTTTGGTT
7886940 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATGAC-ATCGCAACGC
7886979 GAAATGAAAATCGCAACGAGAGAAT--CA---CAACGC
1 GAAATGAAAATCGCAACGAGAGAATGACATCGCAACGC
* * *
7887012 GAAATTAAAATCGCAACGCGA-AATGAAAATCGCAA
1 GAAATGAAAATCGCAACGAGAGAATG-ACATCGCAA
7887047 TTTTCATTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
32 3 0.05
33 25 0.42
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.05
39 25 0.42
ACGTcount: A:0.48, C:0.20, G:0.21, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGAGAGAATGACATCGCAACGC
Found at i:7886991 original size:19 final size:19
Alignment explanation
Indices: 7886940--7887046 Score: 116
Period size: 19 Copynumber: 5.8 Consensus size: 19
7886930 TCTTTTGGTT
*
7886940 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
**
7886959 GAGAATGACTATCGCAACGC
1 GA-AATGAAAATCGCAACGC
7886979 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
* *
7886996 G--A-GAGAATCACAACGC
1 GAAATGAAAATCGCAACGC
*
7887012 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
7887031 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7887047 TTTTCATTTC
Statistics
Matches: 71, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
14 9 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.56
20 16 0.23
ACGTcount: A:0.48, C:0.20, G:0.21, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:7887015 original size:33 final size:36
Alignment explanation
Indices: 7886940--7887029 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 36
7886930 TCTTTTGGTT
7886940 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAAT-ACTA-C-CAACGC
7886979 GAAATGAAAATCGCAACGAGAGAAT-C-A-CAACGC
1 GAAATGAAAATCGCAACGAGAGAATACTACCAACGC
*
7887012 GAAATTAAAATCGCAACG
1 GAAATGAAAATCGCAACG
7887030 CGAAATGAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
33 23 0.46
36 1 0.02
37 1 0.02
39 25 0.50
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.12
Consensus pattern (36 bp):
GAAATGAAAATCGCAACGAGAGAATACTACCAACGC
Found at i:7887087 original size:20 final size:20
Alignment explanation
Indices: 7887062--7887108 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
7887052 ATTTCTCTCA
*
7887062 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGTCATTTTCATG
**
7887082 TTGCGATTTTCATTTTCATG
1 TTGCGATAGTCATTTTCATG
7887102 TTGCGAT
1 TTGCGAT
7887109 TTTAAGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.49
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCATG
Found at i:7887109 original size:20 final size:20
Alignment explanation
Indices: 7887071--7887111 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7887061 ATTGCGATAG
*
7887071 TCATTTTCGTGTTGCGATTT
1 TCATTTTCATGTTGCGATTT
7887091 TCATTTTCATGTTGCGATTT
1 TCATTTTCATGTTGCGATTT
7887111 T
1 T
7887112 AAGTTTAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.56
Consensus pattern (20 bp):
TCATTTTCATGTTGCGATTT
Found at i:7887755 original size:40 final size:41
Alignment explanation
Indices: 7887669--7887855 Score: 288
Period size: 40 Copynumber: 4.6 Consensus size: 41
7887659 TTAAAAATCG
* *
7887669 CGTTGCGATTTACGGATACGTGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
7887710 CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
7887750 TGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
7887790 CGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
7887831 CGTTGCGATTTACGGATACTCGTTG
1 CGTTGCGATTTACGGATACGCGTTG
7887856 TGATAGTCAG
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 73 0.54
41 61 0.46
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:7887853 original size:20 final size:20
Alignment explanation
Indices: 7887669--7887855 Score: 196
Period size: 20 Copynumber: 9.2 Consensus size: 20
7887659 TTAAAAATCG
7887669 CGTTGCGATTTACGGATACGT
1 CGTTGCGATTTACGGATAC-T
* **
7887690 -GTTGCGATTTTACGTATTGT
1 CGTTGCGA-TTTACGGATACT
*
7887710 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGGATACT
* * *
7887730 CATTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACT
* * *
7887750 TGTTGCGATTTACAGATACG
1 CGTTGCGATTTACGGATACT
* *
7887770 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACT
*
7887790 CGTTGCGATTTACGGATACA
1 CGTTGCGATTTACGGATACT
* **
7887810 CGTTGCGATTTTACGTATTGT
1 CGTTGCGA-TTTACGGATACT
7887831 CGTTGCGATTTACGGATACT
1 CGTTGCGATTTACGGATACT
7887851 CGTTG
1 CGTTG
7887856 TGATAGTCAG
Statistics
Matches: 131, Mismatches: 32, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
20 100 0.76
21 31 0.24
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.39
Consensus pattern (20 bp):
CGTTGCGATTTACGGATACT
Found at i:7887875 original size:81 final size:80
Alignment explanation
Indices: 7887669--7887882 Score: 236
Period size: 81 Copynumber: 2.6 Consensus size: 80
7887659 TTAAAAATCG
* * * * *
7887669 CGTTGCGATTTACGGATACGTGTTGCGATTTTACGT-ATTGTCGTTGCGATTTACGGATACGCAT
1 CGTTGCGATTTACAGATACGCGTTGCGA-TTCACGTAATCG-CGTTGCGATTTACGGATACACAT
7887733 TGCGATTTACGTATTCT
64 TGCGATTTACGTATTCT
* * * * *
7887750 TGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACACGTTG
1 CGTTGCGATTTACAGATACGCGTTGCGATTCACGTAATCGCGTTGCGATTTACGGATACACATTG
*
7887815 CGATTTTACGTATTGT
66 CGA-TTTACGTATTCT
* * *
7887831 CGTTGCGATTTACGGATACTCGTTGTGATAGTCA-G-AATCGCGTTGCGATTTA
1 CGTTGCGATTTACAGATACGCGTTGCGAT--TCACGTAATCGCGTTGCGATTTA
7887883 TATGTTCGCA
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
80 33 0.29
81 77 0.68
82 1 0.01
83 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (80 bp):
CGTTGCGATTTACAGATACGCGTTGCGATTCACGTAATCGCGTTGCGATTTACGGATACACATTG
CGATTTACGTATTCT
Found at i:7887891 original size:20 final size:20
Alignment explanation
Indices: 7887868--7887920 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
7887858 ATAGTCAGAA
*
7887868 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
*
7887888 TCGCATTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
7887908 TCGCGTTGCGATT
1 TCGCGTTGCGATT
7887921 ATGGAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.15, C:0.19, G:0.23, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:7887897 original size:121 final size:121
Alignment explanation
Indices: 7887666--7887920 Score: 327
Period size: 121 Copynumber: 2.1 Consensus size: 121
7887656 GCTTTAAAAA
**
7887666 TCGCGTTGCGATTTACGGATACGTGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGC
1 TCGCGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGC
* * ** * *
7887731 ATTGCGATTTACGTATTCTTGTTGCGATTTACAGATACGCGTTGCGATTTACGTAT
66 ATTGCGATTCACGTAATCGCGTTGCGATTTACAGATACGCATTGCGATTTACATAT
* *
7887787 TCTCGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACTC
1 TCGCGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGC
* * * * *
7887852 GTTGTGATAGTCA-G-AATCGCGTTGCGATTTATATG-TTCGCATTGCGATTTTCATAT
66 ATTGCGAT--TCACGTAATCGCGTTGCGATTTACA-GATACGCATTGCGATTTACATAT
7887908 TCGCGTTGCGATT
1 TCGCGTTGCGATT
7887921 ATGGAAAATC
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
121 111 0.97
122 2 0.02
123 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (121 bp):
TCGCGTTGCGATTTACGGATACACGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGC
ATTGCGATTCACGTAATCGCGTTGCGATTTACAGATACGCATTGCGATTTACATAT
Found at i:7887973 original size:21 final size:21
Alignment explanation
Indices: 7887866--7887983 Score: 75
Period size: 21 Copynumber: 5.7 Consensus size: 21
7887856 TGATAGTCAG
* *
7887866 AATCGCGTTGCGATTTAT-AT
1 AATCGCATTGCGATTTGTAAT
** *
7887886 GTTCGCATTGCGATTT-TCAT
1 AATCGCATTGCGATTTGTAAT
* * *
7887906 ATTCGCGTTGCGATTATGGAA-
1 AATCGCATTGCGATT-TGTAAT
* *
7887927 AATCGCAATGCGAATTTGTACT
1 AATCGCATTGCG-ATTTGTAAT
7887949 -ATCGCATTGCGATTCT-TAAT
1 AATCGCATTGCGATT-TGTAAT
*
7887969 AATCGCGTTGCGATT
1 AATCGCATTGCGATT
7887984 CTGGTAACTG
Statistics
Matches: 76, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
19 1 0.01
20 34 0.45
21 37 0.49
22 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (21 bp):
AATCGCATTGCGATTTGTAAT
Found at i:7888521 original size:61 final size:63
Alignment explanation
Indices: 7888420--7888552 Score: 189
Period size: 61 Copynumber: 2.1 Consensus size: 63
7888410 CACGTGTACA
* * * *
7888420 CAATATTAACGTCATCTTCGTCATGATCACTGTATTGGCAGCCATAGTTTAAGC-C-CCATAGC
1 CAATA-TAACGTCATCTTCATCATGATCACAGTATAGGCAGCCAAAGTTTAAGCTCTCCATAGC
*
7888482 CAATATAACGTCATCTTCATCATGATCACAGTATAGGCAGCCAAAGTTTAAGCTTCTCCATTGC
1 CAATATAACGTCATCTTCATCATGATCACAGTATAGGCAGCCAAAGTTTAAGC-TCTCCATAGC
7888546 CAATATA
1 CAATATA
7888553 TTTCTTCTCT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
61 44 0.70
62 5 0.08
63 1 0.02
64 13 0.21
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (63 bp):
CAATATAACGTCATCTTCATCATGATCACAGTATAGGCAGCCAAAGTTTAAGCTCTCCATAGC
Found at i:7891679 original size:99 final size:99
Alignment explanation
Indices: 7891508--7891710 Score: 370
Period size: 99 Copynumber: 2.1 Consensus size: 99
7891498 AGCAGCCTTG
7891508 TCAAGCAAGTATCAGATGATAGCAAACTGGAAACTGGAACCATCACATCTGACTCCGGTTCTTCT
1 TCAAGCAAGTATCAGATGATAGCAAACTGGAAACTGGAACCATCACATCTGACTCCGGTTCTTCT
*
7891573 GCACCAACAACCGGCAAAGATGATCGTGAACCTC
66 GCACCAACAACCAGCAAAGATGATCGTGAACCTC
7891607 TCAAGCAAGTATCAGATGATAGCAAACTGGAAACTGGAACCATCACATCTGACTCCGGTTCTTCT
1 TCAAGCAAGTATCAGATGATAGCAAACTGGAAACTGGAACCATCACATCTGACTCCGGTTCTTCT
* * *
7891672 GCGCCAACCACCAGCAAAGATGATCGTGAACTTC
66 GCACCAACAACCAGCAAAGATGATCGTGAACCTC
7891706 TCAAG
1 TCAAG
7891711 ACCGGGAGAA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (99 bp):
TCAAGCAAGTATCAGATGATAGCAAACTGGAAACTGGAACCATCACATCTGACTCCGGTTCTTCT
GCACCAACAACCAGCAAAGATGATCGTGAACCTC
Found at i:7892554 original size:20 final size:21
Alignment explanation
Indices: 7892525--7892563 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
7892515 TCTCTAGACC
7892525 GAGATCGAGAT-AAAGATGTT
1 GAGATCGAGATAAAAGATGTT
*
7892545 GAGATTGAGATAAAAGATG
1 GAGATCGAGATAAAAGATG
7892564 GCACTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.44, C:0.03, G:0.31, T:0.23
Consensus pattern (21 bp):
GAGATCGAGATAAAAGATGTT
Found at i:7894206 original size:2 final size:2
Alignment explanation
Indices: 7894199--7894224 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7894189 ACAAATATGA
7894199 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7894225 TGTTAGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7895103 original size:3 final size:3
Alignment explanation
Indices: 7895095--7895143 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
7895085 AACGAATAAT
* * *
7895095 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTT TTA ATA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7895142 TT
1 TT
7895144 GTTGAGTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7905397 original size:23 final size:26
Alignment explanation
Indices: 7905332--7905418 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 26
7905322 TTATAAATAT
* **
7905332 TAAATATAATAAATAATATTATTTACAA
1 TAAATATTA-AAATAAT-TTATTTATTA
*
7905360 TAAA-ACTTAATATAA-TTATTT-TTA
1 TAAATA-TTAAAATAATTTATTTATTA
7905384 -AAATATTAAAATAATTTATTTATTA
1 TAAATATTAAAATAATTTATTTATTA
7905409 TTAAATATTA
1 -TAAATATTA
7905419 TTTTTATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
23 11 0.23
24 8 0.17
25 9 0.19
27 14 0.29
28 6 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
TAAATATTAAAATAATTTATTTATTA
Found at i:7905490 original size:31 final size:29
Alignment explanation
Indices: 7905422--7905491 Score: 70
Period size: 33 Copynumber: 2.2 Consensus size: 29
7905412 AATATTATTT
*
7905422 TTATAATTTTATAAATAAAAATATTAATAT
1 TTAT-ATTTTATAAATAAAAATATTAATAA
7905452 TGGTATATTTTATTGAAATAAAAATATT-ATAAA
1 T--TATATTTTA-T-AAATAAAAATATTAAT-AA
7905485 TTATATT
1 TTATATT
7905492 AATTATTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
30 1 0.03
31 12 0.35
32 6 0.18
33 15 0.44
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (29 bp):
TTATATTTTATAAATAAAAATATTAATAA
Done.