Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 37
Found at i:7905725 original size:53 final size:51
Alignment explanation
Indices: 7905668--7905776 Score: 116
Period size: 53 Copynumber: 2.1 Consensus size: 51
7905658 TAAATTTGAT
*
7905668 TAATAATTTATTATATACTATTA-AA-ATT-AAAATATAAATATCTTATATTATTA
1 TAATAATTGATTAT-T-CTATTATAATATTAAAAATAT-AATA--TTATATTATTA
*
7905721 TAATATAATTGATTATTTTATTATAATATTAAAAATATAATATTATATTATTA
1 T-A-ATAATTGATTATTCTATTATAATATTAAAAATATAATATTATATTATTA
7905774 TAA
1 TAA
7905777 ATATTAATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
51 1 0.02
52 1 0.02
53 18 0.37
54 4 0.08
55 18 0.37
56 7 0.14
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (51 bp):
TAATAATTGATTATTCTATTATAATATTAAAAATATAATATTATATTATTA
Found at i:7905767 original size:22 final size:23
Alignment explanation
Indices: 7905739--7905818 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 23
7905729 TTGATTATTT
7905739 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
7905761 TATTATATTATTATAAATATTAA
1 TATTATAATATTAAAAATATTAA
* * * *
7905784 TAAATATAATTTTAAATATTTTAA
1 T-ATTATAATATTAAAAATATTAA
*
7905808 TAAT-TAATATT
1 TATTATAATATT
7905819 TTGATTAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 23 0.49
23 7 0.15
24 17 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:7905772 original size:30 final size:33
Alignment explanation
Indices: 7905712--7905793 Score: 107
Period size: 32 Copynumber: 2.5 Consensus size: 33
7905702 TAAATATCTT
* *
7905712 ATATTATTATAATATAATTGATTATTTTATTAT-A
1 ATATTAATA-AATATAA-TGATTATATTATTATAA
7905746 ATATTAA-AAATATAAT-ATTATATTATTATAA
1 ATATTAATAAATATAATGATTATATTATTATAA
7905777 ATATTAATAAATATAAT
1 ATATTAATAAATATAAT
7905794 TTTAAATATT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
30 12 0.27
31 9 0.20
32 16 0.36
33 1 0.02
34 6 0.14
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (33 bp):
ATATTAATAAATATAATGATTATATTATTATAA
Found at i:7907847 original size:10 final size:10
Alignment explanation
Indices: 7907832--7907872 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
7907822 TGGGAAATGC
7907832 TTTTGTTCAA
1 TTTTGTTCAA
*
7907842 TTTTGTTCCA
1 TTTTGTTCAA
*
7907852 TTTTGTTCCA
1 TTTTGTTCAA
7907862 TTTTGTT-AA
1 TTTTGTTCAA
7907871 TT
1 TT
7907873 ATTGGCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
9 3 0.10
10 26 0.90
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.63
Consensus pattern (10 bp):
TTTTGTTCAA
Found at i:7924368 original size:31 final size:31
Alignment explanation
Indices: 7924323--7924400 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
7924313 TGTTATGGAT
* * * * *
7924323 GAGGTTGCTCGATGAAGGTTGGGAGACTTTG
1 GAGGTTGATTGATGAAGATTGGAAGACTATG
* *
7924354 GAGGTTGTTTGATGAAGATTGGAAGGCTATG
1 GAGGTTGATTGATGAAGATTGGAAGACTATG
*
7924385 GAGGTTGATTGGTGAA
1 GAGGTTGATTGATGAA
7924401 AGAGATGAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.23, C:0.05, G:0.41, T:0.31
Consensus pattern (31 bp):
GAGGTTGATTGATGAAGATTGGAAGACTATG
Found at i:7928837 original size:2 final size:2
Alignment explanation
Indices: 7928830--7928854 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7928820 CTTCATAAAC
7928830 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7928855 GCTTTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7931588 original size:27 final size:27
Alignment explanation
Indices: 7931558--7931612 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7931548 ATATTTTTGT
7931558 TCCATGTATATTTAATGAATGTGACTA
1 TCCATGTATATTTAATGAATGTGACTA
7931585 TCCATGTATATTTAATGAATGTGACTA
1 TCCATGTATATTTAATGAATGTGACTA
7931612 T
1 T
7931613 GAAAAATCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (27 bp):
TCCATGTATATTTAATGAATGTGACTA
Found at i:7933445 original size:65 final size:67
Alignment explanation
Indices: 7933310--7933435 Score: 186
Period size: 65 Copynumber: 1.9 Consensus size: 67
7933300 TCGCAACCGC
*
7933310 AAACTAAACACAAAATAAGAATATTTTCCTAAATACAAAAAAACTAGTCACATAAGATCGTTACC
1 AAACTAAACACAAAATAAGAATATTTTCCTAAACACAAAAAAACTAGTCACATAAGATCGTTACC
*
7933375 GT
66 AT
* *
7933377 AAACTAAACACATAATGAA-AATA-TTTCCTAAACAC-AAAAAACTAGTCACTTAAGATCGT
1 AAACTAAACACAAAAT-AAGAATATTTTCCTAAACACAAAAAAACTAGTCACATAAGATCGT
7933436 GCGCATAAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 23 0.42
66 11 0.20
67 19 0.35
68 2 0.04
ACGTcount: A:0.51, C:0.18, G:0.07, T:0.24
Consensus pattern (67 bp):
AAACTAAACACAAAATAAGAATATTTTCCTAAACACAAAAAAACTAGTCACATAAGATCGTTACC
AT
Found at i:7935343 original size:16 final size:14
Alignment explanation
Indices: 7935321--7935357 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
7935311 TCCTCTTCTC
7935321 TTCTTTCCTTTTCTT
1 TTCTTTCCTTTT-TT
7935336 TCTCTTTCCTTTTTT
1 T-TCTTTCCTTTTTT
7935351 TTCTTTC
1 TTCTTTC
7935358 ATAACCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 4 0.19
16 11 0.52
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCTTTCCTTTTTT
Found at i:7935449 original size:24 final size:24
Alignment explanation
Indices: 7935404--7935450 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7935394 ACCTCCAACC
**
7935404 ACCTCATCCCTCTCAATTTAACAT
1 ACCTCATCCCTCTCAAAATAACAT
*
7935428 ACCTTATCCCTCTCAAAATAACA
1 ACCTCATCCCTCTCAAAATAACA
7935451 CACGATAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (24 bp):
ACCTCATCCCTCTCAAAATAACAT
Found at i:7937087 original size:31 final size:32
Alignment explanation
Indices: 7937047--7937138 Score: 111
Period size: 31 Copynumber: 3.0 Consensus size: 32
7937037 CCCGAATGAT
*
7937047 CAGTCCATATAT-TCCGAAGAACATAGGTAAA
1 CAGTTCATATATATCCGAAGAACATAGGTAAA
* *
7937078 CAGTTCATATGTAT-CGAAGAACATAGGTAAT
1 CAGTTCATATATATCCGAAGAACATAGGTAAA
*
7937109 CAG-TC-TATATGTCCCGAAGAACATAGGTAA
1 CAGTTCATATATAT-CCGAAGAACATAGGTAA
7937139 CCCTCGACTC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
29 5 0.09
30 2 0.04
31 45 0.85
32 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.25
Consensus pattern (32 bp):
CAGTTCATATATATCCGAAGAACATAGGTAAA
Found at i:7937995 original size:45 final size:46
Alignment explanation
Indices: 7937903--7938036 Score: 143
Period size: 45 Copynumber: 3.0 Consensus size: 46
7937893 GGTGCACTAA
** ** *
7937903 GAGTGCATCGATGCATGAAATGT--ATTCGATGTTTCAAAATAGC-CT
1 GAGTGCATCGATGCATGGTATGTGCA-TCGATGCATAAAAAT-GCACT
*
7937948 GAGTGCATCGATGCATGGCT-TGTGCATCGATGCAT-CAAATGCACT
1 GAGTGCATCGATGCATGG-TATGTGCATCGATGCATAAAAATGCACT
*
7937993 GAGTGTATCGATGCATGGTATGTGCATCGATGCATAAAAATGCA
1 GAGTGCATCGATGCATGGTATGTGCATCGATGCATAAAAATGCA
7938037 TTCGATGTTC
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
44 3 0.04
45 58 0.76
46 14 0.18
47 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (46 bp):
GAGTGCATCGATGCATGGTATGTGCATCGATGCATAAAAATGCACT
Found at i:7939513 original size:20 final size:20
Alignment explanation
Indices: 7939488--7939528 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7939478 AGTGGAGTAC
7939488 CTACCTCCGGATGGTATAAA
1 CTACCTCCGGATGGTATAAA
*
7939508 CTACCTCCGGATGGTCTAAA
1 CTACCTCCGGATGGTATAAA
7939528 C
1 C
7939529 CACCAAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (20 bp):
CTACCTCCGGATGGTATAAA
Found at i:7940743 original size:23 final size:23
Alignment explanation
Indices: 7940713--7940794 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 23
7940703 GCATGGCCTT
7940713 GTGCATCGATGCACATTCAAGGC
1 GTGCATCGATGCACATTCAAGGC
* * *
7940736 GTGCATCGGTGCATC-TTCATGAC
1 GTGCATCGATGCA-CATTCAAGGC
*
7940759 --GAATCGATGCACATTCAAAGG-
1 GTGCATCGATGCACATTC-AAGGC
7940780 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
7940795 TATTAAGTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 11
0.70 0.12 0.17
Matches are distributed among these distances:
20 1 0.02
21 12 0.27
22 2 0.04
23 18 0.40
24 12 0.27
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (23 bp):
GTGCATCGATGCACATTCAAGGC
Found at i:7946302 original size:17 final size:18
Alignment explanation
Indices: 7946256--7946303 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
7946246 AATTGTGTTC
7946256 TTGAAAGCAAAATGAATA
1 TTGAAAGCAAAATGAATA
7946274 TTGAAAGCAAAATGAATA
1 TTGAAAGCAAAATGAATA
*
7946292 TT-AAAGGAAAAT
1 TTGAAAGCAAAAT
7946304 TGGCTTGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.56, C:0.04, G:0.17, T:0.23
Consensus pattern (18 bp):
TTGAAAGCAAAATGAATA
Found at i:7946359 original size:22 final size:22
Alignment explanation
Indices: 7946332--7946385 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
7946322 TTTGATGTTT
7946332 GATGATTTCTCTCTTATTTCTC
1 GATGATTTCTCTCTTATTTCTC
*
7946354 GATGATTTCTCTCTTGTTTCTC
1 GATGATTTCTCTCTTATTTCTC
* *
7946376 AATAATTTCT
1 GATGATTTCT
7946386 TGTTGTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.17, C:0.20, G:0.09, T:0.54
Consensus pattern (22 bp):
GATGATTTCTCTCTTATTTCTC
Found at i:7946393 original size:21 final size:22
Alignment explanation
Indices: 7946336--7946395 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
7946326 ATGTTTGATG
* * *
7946336 ATTTCTCTCTTATTTCTCGATG
1 ATTTCTCTCTTGTTTCTCAATA
7946358 ATTTCTCTCTTGTTTCTCAATA
1 ATTTCTCTCTTGTTTCTCAATA
*
7946380 ATTTCT-TGTTGTTTCT
1 ATTTCTCTCTTGTTTCT
7946396 TGTTGATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 9 0.26
22 25 0.74
ACGTcount: A:0.13, C:0.20, G:0.08, T:0.58
Consensus pattern (22 bp):
ATTTCTCTCTTGTTTCTCAATA
Found at i:7946714 original size:26 final size:26
Alignment explanation
Indices: 7946681--7946746 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
7946671 TGCATGGCTT
7946681 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATGCACTGA
7946707 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATGCACTGA
7946733 GTGCATCGATGCAT
1 GTGCATCGATGCAT
7946747 GGTATGTGCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (26 bp):
GTGCATCGATGCATCAAATGCACTGA
Found at i:7948801 original size:20 final size:20
Alignment explanation
Indices: 7948776--7948826 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
7948766 TCGGTACCAC
*
7948776 ATCGATATTGTTCATGTAGT
1 ATCGATATTGTTCATATAGT
7948796 ATCGATATTGTTCATATAGT
1 ATCGATATTGTTCATATAGT
7948816 ATCGATATTGT
1 ATCGATATTGT
7948827 AAGAACAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (20 bp):
ATCGATATTGTTCATATAGT
Found at i:7953643 original size:26 final size:26
Alignment explanation
Indices: 7953607--7953668 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
7953597 AAAGAGTTTT
7953607 AGGATTTGTTTGCAGTTTGGGATGAA
1 AGGATTTGTTTGCAGTTTGGGATGAA
7953633 AGGATTTGTTTGCAGTTTGGGATGAA
1 AGGATTTGTTTGCAGTTTGGGATGAA
7953659 AGGATTTGTT
1 AGGATTTGTT
7953669 AGGACCTGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.23, C:0.03, G:0.34, T:0.40
Consensus pattern (26 bp):
AGGATTTGTTTGCAGTTTGGGATGAA
Found at i:7957415 original size:3 final size:3
Alignment explanation
Indices: 7957407--7957435 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7957397 ATAGAAAGTA
7957407 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7957436 AGGAAATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7958285 original size:2 final size:2
Alignment explanation
Indices: 7958280--7958306 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7958270 ACACACACAC
7958280 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7958307 CATACATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7962240 original size:13 final size:13
Alignment explanation
Indices: 7962222--7962257 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
7962212 GAGGTGTTAC
7962222 ATTGACTTTTCCA
1 ATTGACTTTTCCA
7962235 ATTGACTTTTCCA
1 ATTGACTTTTCCA
7962248 ATTGACTTTT
1 ATTGACTTTT
7962258 TTAAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.50
Consensus pattern (13 bp):
ATTGACTTTTCCA
Found at i:7962880 original size:32 final size:31
Alignment explanation
Indices: 7962800--7962983 Score: 205
Period size: 32 Copynumber: 5.9 Consensus size: 31
7962790 GAATGACCTA
*
7962800 TCCATATGTTCCGAAGAACATGGGTAA-CTG
1 TCCATATGTTCCGAAGAACATAGGTAATCTG
* **
7962830 TTCATATGTT-TTAGAGAACATAGGTAATCATG
1 TCCATATGTTCCGA-AGAACATAGGTAATC-TG
*
7962862 TCCATATGTTCCGAAGAACATATGTAATCCTG
1 TCCATATGTTCCGAAGAACATAGGTAAT-CTG
* *
7962894 TCCATATGTTCTGAAGAACATATGTAATCTTG
1 TCCATATGTTCCGAAGAACATAGGTAATC-TG
* *
7962926 TCCATATGTTCCGAAGAATATAGGTAATCTA
1 TCCATATGTTCCGAAGAACATAGGTAATCTG
7962957 TCCATATG-TCTCGAA-AGACATAGGTAA
1 TCCATATGTTC-CGAAGA-ACATAGGTAA
7962984 CTCTCGACTC
Statistics
Matches: 132, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
29 1 0.01
30 24 0.18
31 24 0.18
32 81 0.61
33 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (31 bp):
TCCATATGTTCCGAAGAACATAGGTAATCTG
Found at i:7962921 original size:64 final size:63
Alignment explanation
Indices: 7962800--7962983 Score: 230
Period size: 64 Copynumber: 2.9 Consensus size: 63
7962790 GAATGACCTA
* * *
7962800 TCCATATGTTCCGAAGAACATGGGTAA-CTGTTCATATGTTTTAGAGAACATAGGTAATCATG
1 TCCATATGTTCCGAAGAACATAGGTAATCTGTCCATATGTTTGAGAGAACATAGGTAATCATG
* * *
7962862 TCCATATGTTCCGAAGAACATATGTAATCCTGTCCATATGTTCTGA-AGAACATATGTAATCTTG
1 TCCATATGTTCCGAAGAACATAGGTAAT-CTGTCCATATGTT-TGAGAGAACATAGGTAATCATG
* * * *
7962926 TCCATATGTTCCGAAGAATATAGGTAATCTATCCATATGTCTCGAAAG-ACATAGGTAA
1 TCCATATGTTCCGAAGAACATAGGTAATCTGTCCATATGT-TTGAGAGAACATAGGTAA
7962984 CTCTCGACTC
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
62 25 0.24
63 22 0.21
64 57 0.54
65 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (63 bp):
TCCATATGTTCCGAAGAACATAGGTAATCTGTCCATATGTTTGAGAGAACATAGGTAATCATG
Found at i:7964558 original size:21 final size:21
Alignment explanation
Indices: 7964532--7964576 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7964522 GATTTCTGGG
* *
7964532 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
7964553 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
7964574 CAA
1 CAA
7964577 ACGAACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:7965500 original size:62 final size:62
Alignment explanation
Indices: 7965380--7965504 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 62
7965370 AGGGTCGAGG
* * * * *
7965380 GTTTACCTATGTTCTTCGGGACATATGGACTGTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTCCTTCGGGACATATGGACTGATTACCTAGGTTCTTCAGAACATATGGACT
7965442 GTTTACCTATGTCCTTCGGGACATATGGACTGATTACCTAGGTTCTTCAGAATC-TATGGACT
1 GTTTACCTATGTCCTTCGGGACATATGGACTGATTACCTAGGTTCTTCAGAA-CATATGGACT
7965504 G
1 G
7965505 GTCCTTCGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
62 56 0.98
63 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (62 bp):
GTTTACCTATGTCCTTCGGGACATATGGACTGATTACCTAGGTTCTTCAGAACATATGGACT
Found at i:7965504 original size:31 final size:31
Alignment explanation
Indices: 7965380--7965489 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
7965370 AGGGTCGAGG
7965380 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
7965411 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
7965442 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
7965473 GATTACCTAGGTTCTTC
1 GTTTACCTATGTTCTTC
7965490 AGAATCTATG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:7965797 original size:17 final size:17
Alignment explanation
Indices: 7965777--7965812 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7965767 TATGTGTATG
7965777 TATGTATTTACTGTAAT
1 TATGTATTTACTGTAAT
7965794 TATGTATTTACTGTAAT
1 TATGTATTTACTGTAAT
7965811 TA
1 TA
7965813 ATCTGATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (17 bp):
TATGTATTTACTGTAAT
Found at i:7974434 original size:165 final size:165
Alignment explanation
Indices: 7974162--7974651 Score: 757
Period size: 165 Copynumber: 3.0 Consensus size: 165
7974152 TGCAGTCCGA
* * *
7974162 TCTCTTTCGGAGGAAATGCAGAATATCCATCTT-GAAGTTAAGCAACCTCTAGAATTACGAATCA
1 TCTCTTTCAGAGGAAATGCAGAATATCCAT-TTCGAAGTTAAGCAACCTCAAGAATTACGAACCA
* * *
7974226 ACGAGCTCGAACCAAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATTAAAAATGGCAACAGAA
65 AAGAGCTCGAACCGAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATCAAAAATGGCAACAGAA
*
7974291 AGTTCTGAAATGTCACAACAAATGCCAATTGTCTGG
130 AGTTCTGAAATGTCACAACAAATGCCAATGGTCTGG
**
7974327 TCTCTTTCAGAGGAAATGCAGAATATCCATTTCGAAGTTAAGCAACCTCAAGAATTAATAACCAA
1 TCTCTTTCAGAGGAAATGCAGAATATCCATTTCGAAGTTAAGCAACCTCAAGAATTACGAACCAA
7974392 AGAGCTCGAACCGAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATCAAAAATGGCAACAGAAA
66 AGAGCTCGAACCGAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATCAAAAATGGCAACAGAAA
*
7974457 GTTTTGAAATGTCACAACAAATGCCAATGGTCTGG
131 GTTCTGAAATGTCACAACAAATGCCAATGGTCTGG
* *
7974492 TCTCTTTCAGAGGAAATGCAGAATGTCCATTTCGAAGTTAAGCACCCTCAAGAATTACGAACCAA
1 TCTCTTTCAGAGGAAATGCAGAATATCCATTTCGAAGTTAAGCAACCTCAAGAATTACGAACCAA
** * * * *
7974557 AGAGCTCGAACCGAAGATATCTTTTGCAACAAAACAACCTAAGAAATCAAAAATGGGAATAGAAA
66 AGAGCTCGAACCGAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATCAAAAATGGCAACAGAAA
* * * * *
7974622 ATTCTCAAATGCCACAAGAATTGCCAATGG
131 GTTCTGAAATGTCACAACAAATGCCAATGG
7974652 AATCAGTCCA
Statistics
Matches: 298, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
164 2 0.01
165 296 0.99
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (165 bp):
TCTCTTTCAGAGGAAATGCAGAATATCCATTTCGAAGTTAAGCAACCTCAAGAATTACGAACCAA
AGAGCTCGAACCGAAGATGCCTTTTGCAACAGAACAGCCTAAGAAATCAAAAATGGCAACAGAAA
GTTCTGAAATGTCACAACAAATGCCAATGGTCTGG
Found at i:7995488 original size:18 final size:18
Alignment explanation
Indices: 7995447--7995491 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7995437 AAAAAGTATA
7995447 AAAAAATATTTAAATTAT
1 AAAAAATATTTAAATTAT
* *
7995465 ATAAAAT-TTTAAACTTTT
1 AAAAAATATTTAAA-TTAT
7995483 AAAAAATAT
1 AAAAAATAT
7995492 ATAACTGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 15 0.68
19 1 0.05
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAAATATTTAAATTAT
Found at i:7998722 original size:17 final size:17
Alignment explanation
Indices: 7998700--7998734 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7998690 TCAAGATAAA
7998700 AAAATTAGCCACTTAAG
1 AAAATTAGCCACTTAAG
7998717 AAAATTAGCCACTTAAG
1 AAAATTAGCCACTTAAG
7998734 A
1 A
7998735 TCATATATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (17 bp):
AAAATTAGCCACTTAAG
Found at i:7999065 original size:17 final size:15
Alignment explanation
Indices: 7999020--7999062 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
7999010 TCTAATCATA
*
7999020 AAAAAAATAAACGAC
1 AAAAAAATAAACTAC
7999035 AAAAAAATCAAACTAC
1 AAAAAAAT-AAACTAC
7999051 AAAAAATATAAA
1 AAAAAA-ATAAA
7999063 ACTGAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 8 0.32
16 15 0.60
17 2 0.08
ACGTcount: A:0.74, C:0.12, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAAAAATAAACTAC
Found at i:7999071 original size:17 final size:16
Alignment explanation
Indices: 7999020--7999071 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
7999010 TCTAATCATA
7999020 AAAAAAATAAAC-GAC
1 AAAAAAATAAACTGAC
7999035 AAAAAAATCAAACT-AC
1 AAAAAAAT-AAACTGAC
7999051 AAAAAATATAAAACTGA-
1 AAAAAA-AT-AAACTGAC
7999068 AAAA
1 AAAA
7999072 TATGTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.25
16 12 0.38
17 11 0.34
18 1 0.03
ACGTcount: A:0.73, C:0.12, G:0.04, T:0.12
Consensus pattern (16 bp):
AAAAAAATAAACTGAC
Found at i:8008839 original size:15 final size:15
Alignment explanation
Indices: 8008821--8008850 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8008811 CCACGGTGCT
8008821 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
8008836 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
8008851 GATTGTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.47, G:0.27, T:0.13
Consensus pattern (15 bp):
CCCGGAATCCTGCGC
Found at i:8010751 original size:14 final size:15
Alignment explanation
Indices: 8010732--8010760 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8010722 GTCATCTTCC
8010732 CATATATAT-ATACA
1 CATATATATAATACA
8010746 CATATATATAATACA
1 CATATATATAATACA
8010761 TGTTCCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
CATATATATAATACA
Found at i:8015868 original size:31 final size:31
Alignment explanation
Indices: 8015830--8015891 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8015820 CGTTTTTATA
8015830 CTCAAAATTATTATAATATCAAATCGAATCC
1 CTCAAAATTATTATAATATCAAATCGAATCC
8015861 CTCAAAATTATTATAATATCAAATCGAATCC
1 CTCAAAATTATTATAATATCAAATCGAATCC
8015892 GAGTATGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (31 bp):
CTCAAAATTATTATAATATCAAATCGAATCC
Found at i:8016961 original size:29 final size:29
Alignment explanation
Indices: 8016928--8016991 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
8016918 AAAATATATG
* *
8016928 AATAGTCGGATGATCATTTTATAATTTTT
1 AATAGTCAGATAATCATTTTATAATTTTT
*
8016957 AATAGTTAGATAATCATTTTATAATTTTT
1 AATAGTCAGATAATCATTTTATAATTTTT
8016986 AATAGT
1 AATAGT
8016992 TGAGAGACTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (29 bp):
AATAGTCAGATAATCATTTTATAATTTTT
Found at i:8019468 original size:200 final size:200
Alignment explanation
Indices: 8019118--8019920 Score: 1525
Period size: 200 Copynumber: 4.0 Consensus size: 200
8019108 TTGAGCAAGT
*
8019118 TTTCTTCTGCAGTACTTTTCACTAATGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
1 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
* *
8019183 ATGTAAATACGTTGCTATTGGATCGCTGTATGTTTTGTTTATCTGAATTTATCTTTGGGCTACTC
66 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
*
8019248 AATGGGGTATAGCTCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
131 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
8019313 TTTTG
196 TTTTG
8019318 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
1 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
8019383 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
66 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
8019448 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
131 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
8019513 TTTTG
196 TTTTG
8019518 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
1 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
8019583 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
66 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
8019648 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
131 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
8019713 TTTTG
196 TTTTG
8019718 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
1 TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
* *
8019783 ATGTAAATACGTTGCTATTGGATCGCTGTATGTTTTGTTTATCTGAATTTATCTTTGGGCTACTC
66 ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
* * *
8019848 AATGGGGTACAGCTCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTTCCTT
131 AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
8019913 TTTTG
196 TTTTG
8019918 TTT
1 TTT
8019921 GAATCCTTGA
Statistics
Matches: 594, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 594 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (200 bp):
TTTCTTCTGCAGTACTTTTCACTATTGTAATAATCCATTTGACTTTTAATGAAAGTTTGTTGTCT
ATGTAAATACGTTGCTATTGGAACGCTGTATGTTTTGTTTATCTGAATTTATATTTGGGCTACTC
AATGGGGTATAGCCCTGTTTCTTCCTTGAACTATGTCAAAGTCAACTGTAGATCCTATTTCCCTT
TTTTG
Found at i:8022857 original size:2 final size:2
Alignment explanation
Indices: 8022850--8022883 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8022840 CATATTGCTC
8022850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8022884 TACTAAAACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8024670 original size:6 final size:6
Alignment explanation
Indices: 8024659--8024683 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8024649 CTTCTTTCCC
8024659 CCCCTT CCCCTT CCCCTT CCCCTT C
1 CCCCTT CCCCTT CCCCTT CCCCTT C
8024684 TATGGTCGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CCCCTT
Found at i:8035580 original size:24 final size:23
Alignment explanation
Indices: 8035543--8035587 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8035533 AAATTATATA
* *
8035543 TTTAACTTGTAAATATTTATCTAT
1 TTTAACTCGAAAAT-TTTATCTAT
8035567 TTTAACTCGAAAATTTTATCT
1 TTTAACTCGAAAATTTTATCT
8035588 CATCCGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.51
Consensus pattern (23 bp):
TTTAACTCGAAAATTTTATCTAT
Found at i:8036729 original size:21 final size:21
Alignment explanation
Indices: 8036705--8036748 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
8036695 ATAATTTAAG
8036705 ATTA-ATTTAATTTAAAATATT
1 ATTATATTTAATTTAAAA-ATT
*
8036726 ATTATGTTTAATTTAAAAATT
1 ATTATATTTAATTTAAAAATT
8036747 AT
1 AT
8036749 ATAAATGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATTATATTTAATTTAAAAATT
Found at i:8048082 original size:19 final size:20
Alignment explanation
Indices: 8048038--8048082 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8048028 TATTTGTTTT
*
8048038 AATAAATTTTTATCTATGAA
1 AATAAATTTTTATCTATCAA
* *
8048058 ATTAAATTTTTAT-TTTCAA
1 AATAAATTTTTATCTATCAA
8048077 AATAAA
1 AATAAA
8048083 ATATTAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
AATAAATTTTTATCTATCAA
Found at i:8053933 original size:67 final size:67
Alignment explanation
Indices: 8053852--8053984 Score: 221
Period size: 67 Copynumber: 2.0 Consensus size: 67
8053842 ACATACTTAT
* * * * *
8053852 AAGAAAGTAAGATAAAAATCCTAACTTGAATGTTAAGAACCCATGACATGGAAATCACATTATTC
1 AAGAAAATAAGATAAAAATCCTAACATGAATATTAAGAACCCATGACATCGAAACCACATTATTC
8053917 GA
66 GA
8053919 AAGAAAATAAGATAAAAATCCTAACATGAATATTAAGAACCCATGACATCGAAACCACATTATTC
1 AAGAAAATAAGATAAAAATCCTAACATGAATATTAAGAACCCATGACATCGAAACCACATTATTC
8053984 G
66 G
8053985 TGCACACAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.23
Consensus pattern (67 bp):
AAGAAAATAAGATAAAAATCCTAACATGAATATTAAGAACCCATGACATCGAAACCACATTATTC
GA
Found at i:8065328 original size:16 final size:16
Alignment explanation
Indices: 8065307--8065337 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8065297 TTAAAGTTGC
*
8065307 GATAAAGTTTTGATAA
1 GATAAAATTTTGATAA
8065323 GATAAAATTTTGATA
1 GATAAAATTTTGATA
8065338 TATTTTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (16 bp):
GATAAAATTTTGATAA
Found at i:8068922 original size:21 final size:22
Alignment explanation
Indices: 8068896--8068936 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8068886 CTTCCTGCAC
*
8068896 TACTTATCTA-ATATCTTTTTA
1 TACTTATCTATATACCTTTTTA
8068917 TACTTATCTATATACCTTTT
1 TACTTATCTATATACCTTTT
8068937 CCTTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (22 bp):
TACTTATCTATATACCTTTTTA
Found at i:8069170 original size:21 final size:21
Alignment explanation
Indices: 8069118--8069177 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
8069108 GGGCACTGTA
* *
8069118 TATTTTTCCCGAATGACCAC-
1 TATTTGTCCCGAAGGACCACT
*
8069138 TA--TGTCCTGAAGGACCACT
1 TATTTGTCCCGAAGGACCACT
8069157 TATTTGTCCCGAAGGACCACT
1 TATTTGTCCCGAAGGACCACT
8069178 CATTAAGAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 13 0.39
19 2 0.06
20 2 0.06
21 16 0.48
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (21 bp):
TATTTGTCCCGAAGGACCACT
Found at i:8074873 original size:17 final size:17
Alignment explanation
Indices: 8074853--8074895 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
8074843 TAATTAATTC
8074853 AAAAAAAATATTATTT-T
1 AAAAAAAAT-TTATTTAT
8074870 AAAAAATTAATTTATTTAT
1 AAAAAA--AATTTATTTAT
8074889 AAAAAAA
1 AAAAAAA
8074896 TCTCAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 7 0.30
18 6 0.26
19 10 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAAAAATTTATTTAT
Found at i:8084211 original size:19 final size:19
Alignment explanation
Indices: 8084196--8084234 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8084186 AAGGTTTTGT
8084196 CACTCTAAGATTGTTTTTA
1 CACTCTAAGATTGTTTTTA
8084215 CACTCTAAGATTGTTTTTA
1 CACTCTAAGATTGTTTTTA
8084234 C
1 C
8084235 GGACAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (19 bp):
CACTCTAAGATTGTTTTTA
Found at i:8098266 original size:29 final size:30
Alignment explanation
Indices: 8098207--8098267 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
8098197 CATTTTGAGT
* * *
8098207 AACGGAATGAAACATTAGGTACCAAATTGA
1 AACGAAATGAAACATTAGATACCAAACTGA
* *
8098237 AACGAAAT-AAACGTTAGATACTAAACTGA
1 AACGAAATGAAACATTAGATACCAAACTGA
8098266 AA
1 AA
8098268 AAAGGGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (30 bp):
AACGAAATGAAACATTAGATACCAAACTGA
Found at i:8118827 original size:42 final size:42
Alignment explanation
Indices: 8118768--8118895 Score: 238
Period size: 42 Copynumber: 3.0 Consensus size: 42
8118758 AGCACCTCCT
8118768 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCA
1 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCA
*
8118810 CCTTCAACAGCAACGCCTCCACCTACCACCACTCCAATCGCA
1 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCA
*
8118852 CCTTCAACAGCGACGCCTCCGCCTACCACCACTCCAATCGCA
1 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCA
8118894 CC
1 CC
8118896 AGCGCAGCCA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.26, C:0.51, G:0.09, T:0.14
Consensus pattern (42 bp):
CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCA
Found at i:8118853 original size:21 final size:21
Alignment explanation
Indices: 8118789--8118854 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
8118779 AACGCCTCCG
8118789 CCTACCACCACTCCAATCGCA
1 CCTACCACCACTCCAATCGCA
* * *
8118810 CCTTCAACAGCAACGCC--TC-CA
1 CC-T-ACCA-CCACTCCAATCGCA
8118831 CCTACCACCACTCCAATCGCA
1 CCTACCACCACTCCAATCGCA
8118852 CCT
1 CCT
8118855 TCAACAGCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 5 0.15
19 3 0.09
20 3 0.09
21 11 0.33
22 3 0.09
23 3 0.09
24 5 0.15
ACGTcount: A:0.27, C:0.52, G:0.06, T:0.15
Consensus pattern (21 bp):
CCTACCACCACTCCAATCGCA
Found at i:8118937 original size:84 final size:83
Alignment explanation
Indices: 8118768--8118927 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 83
8118758 AGCACCTCCT
** * *
8118768 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCACCTTCAACAGCAACGCCTCCACC
1 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCACCAGCAACAGC-ACACCTCAACC
*
8118833 TACCACCACTCCAATCGCA
65 AACCACCACTCCAATCGCA
* * *
8118852 CCTTCAACAGCGACGCCTCCGCCTACCACCACTCCAATCGCACCAGC-GCAGC-CACCTGTAACC
1 CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCACCAGCAACAGCACACCT-CAACC
*
8118915 AACC-CCCCTCCAA
65 AACCACCACTCCAA
8118928 AAGTTGCACC
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
81 12 0.18
82 6 0.09
83 4 0.06
84 44 0.67
ACGTcount: A:0.26, C:0.51, G:0.10, T:0.13
Consensus pattern (83 bp):
CCTTCAACAGCAACGCCTCCGCCTACCACCACTCCAATCGCACCAGCAACAGCACACCTCAACCA
ACCACCACTCCAATCGCA
Found at i:8124825 original size:24 final size:24
Alignment explanation
Indices: 8124798--8124851 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
8124788 GTATTCAAAA
8124798 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
8124822 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
8124846 TTTGAT
1 TTTGAT
8124852 AATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:8127369 original size:19 final size:19
Alignment explanation
Indices: 8127345--8127477 Score: 124
Period size: 19 Copynumber: 7.4 Consensus size: 19
8127335 GCAACGAGAG
8127345 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
8127364 AATCGCAA--CG---TGAA
1 AATCGCAATGCGAAATGAA
*
8127378 AATCGCAACGCGAATATGAA
1 AATCGCAATGCGAA-ATGAA
* * *
8127398 TATCGCAACGCAGAAATGAC
1 AATCGCAATGC-GAAATGAA
*
8127418 TATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
8127437 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
8127451 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
8127470 AATCGCAA
1 AATCGCAA
8127478 CGAGGGAATC
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
14 22 0.23
15 1 0.01
16 4 0.04
17 4 0.04
18 1 0.01
19 32 0.34
20 28 0.29
21 3 0.03
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:8127369 original size:33 final size:33
Alignment explanation
Indices: 8127332--8127512 Score: 218
Period size: 33 Copynumber: 5.3 Consensus size: 33
8127322 GGAAATTACT
8127332 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* * * *
8127365 ATCGCAACGTGAAAATCGCAACGCGAATATGAAT
1 ATCGCAACGAGAGAATCGCAATGCGAA-ATGAAA
8127399 ATCGCAACGCAGAAATGACTATCGCAATGCGAAATGAAA
1 ATCGCAACG-AG--A-GA--ATCGCAATGCGAAATGAAA
8127438 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
* * * **
8127471 ATCGCAACGAGGGAATCACAAAGTAAAATGAAA
1 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
8127504 ATCGCAACG
1 ATCGCAACG
8127513 CGAATTTAGT
Statistics
Matches: 128, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
33 80 0.62
34 14 0.11
35 3 0.02
36 1 0.01
37 1 0.01
38 3 0.02
39 14 0.11
40 12 0.09
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (33 bp):
ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
Found at i:8127379 original size:14 final size:14
Alignment explanation
Indices: 8127360--8127387 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8127350 CAATGCGAAA
8127360 TGAAAATCGCAACG
1 TGAAAATCGCAACG
8127374 TGAAAATCGCAACG
1 TGAAAATCGCAACG
8127388 CGAATATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
TGAAAATCGCAACG
Found at i:8127539 original size:19 final size:19
Alignment explanation
Indices: 8127512--8127557 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
8127502 AAATCGCAAC
* *
8127512 GCGAATTTAGTTTCGTGTT
1 GCGATTTTAGTTTCGCGTT
8127531 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
8127550 GCGATTTT
1 GCGATTTT
8127558 CATTTTGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.26, T:0.48
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:8127570 original size:19 final size:19
Alignment explanation
Indices: 8127512--8127573 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
8127502 AAATCGCAAC
* **
8127512 GCGAATTTAGTTTCGTGTT
1 GCGATTTTAGTTTCGCATT
*
8127531 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCATT
*
8127550 GCGATTTTCA-TTTTGCATT
1 GCGATTTT-AGTTTCGCATT
8127569 GCGAT
1 GCGAT
8127574 AGTCATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 37 0.97
20 1 0.03
ACGTcount: A:0.15, C:0.15, G:0.24, T:0.47
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCATT
Found at i:8127699 original size:14 final size:14
Alignment explanation
Indices: 8127680--8127716 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
8127670 CATCAATTAA
8127680 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
8127694 ACAAATCATCTTTT
1 ACAAATCAACTTTT
8127708 ACAAATCAA
1 ACAAATCAA
8127717 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:8129132 original size:21 final size:21
Alignment explanation
Indices: 8129066--8129132 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
8129056 GTGAATCGGG
8129066 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAATGGTGGGAGGGGA
* * * ** * *
8129086 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAATGGTGGGAGGGGA
8129108 CTCTTGAATGGTGGGAGGGGA
1 CTCTTGAATGGTGGGAGGGGA
8129129 CTCT
1 CTCT
8129133 CGAGGAATGA
Statistics
Matches: 31, Mismatches: 14, Indels: 2
0.66 0.30 0.04
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.25
Consensus pattern (21 bp):
CTCTTGAATGGTGGGAGGGGA
Found at i:8129734 original size:74 final size:75
Alignment explanation
Indices: 8129645--8129798 Score: 283
Period size: 75 Copynumber: 2.1 Consensus size: 75
8129635 AATTTACTTT
*
8129645 CAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCA
1 CAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCA
8129709 GAATTGGCAG
66 GAATTGGCAG
8129719 CAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCA
1 CAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCA
*
8129784 GTATTGGCAG
66 GAATTGGCAG
8129794 CAACC
1 CAACC
8129799 GAATAAATTT
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 17 0.22
75 60 0.78
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.18
Consensus pattern (75 bp):
CAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCA
GAATTGGCAG
Found at i:8131412 original size:2 final size:2
Alignment explanation
Indices: 8131405--8131450 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
8131395 TGCACCTTTC
*
8131405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8131447 AT AT
1 AT AT
8131451 CCACGCATAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8131928 original size:30 final size:30
Alignment explanation
Indices: 8131723--8131911 Score: 335
Period size: 30 Copynumber: 6.3 Consensus size: 30
8131713 GAAGGACCTA
* *
8131723 TCCAGAGGTCACAAAGA-CCCCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
8131752 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
8131782 TCCAGAGGTCATAAAGATCCTCAGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
8131812 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
8131842 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
8131872 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
8131902 TCCATAGGTC
1 TCCAGAGGTC
8131912 CCGAAGAACC
Statistics
Matches: 154, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 16 0.10
30 138 0.90
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:8133120 original size:21 final size:21
Alignment explanation
Indices: 8133090--8133134 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8133080 ATTCTGTCGT
* *
8133090 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
8133111 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
8133132 TTG
1 TTG
8133135 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:8134402 original size:20 final size:21
Alignment explanation
Indices: 8134379--8134426 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8134369 ATGAAAATCG
8134379 CAACGAGAG-AATGACTATCA
1 CAACGAGAGAAATGACTATCA
* *
8134399 CAACGCG-GAAATGACTATCG
1 CAACGAGAGAAATGACTATCA
8134419 CAACGAGA
1 CAACGAGA
8134427 AATTAAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (21 bp):
CAACGAGAGAAATGACTATCA
Found at i:8134464 original size:19 final size:19
Alignment explanation
Indices: 8134366--8134464 Score: 99
Period size: 19 Copynumber: 5.1 Consensus size: 19
8134356 TCTTTTGGTT
*
8134366 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
** *
8134385 GAGAATGACTATCACAACGC
1 GA-AATGAAAATCGCAACGC
** *
8134405 GGAAATGACTATCGCAACGA
1 -GAAATGAAAATCGCAACGC
*
8134425 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
8134444 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
8134463 GA
1 GA
8134465 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
19 36 0.55
20 28 0.42
21 2 0.03
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.14
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:8134514 original size:19 final size:19
Alignment explanation
Indices: 8134490--8134526 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8134480 GCGATTATCT
8134490 CGTTGCAATTTTCATTTCG
1 CGTTGCAATTTTCATTTCG
*
8134509 CGTTGCGATTTTCATTTC
1 CGTTGCAATTTTCATTTC
8134527 TCTCGTTGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.22, G:0.16, T:0.49
Consensus pattern (19 bp):
CGTTGCAATTTTCATTTCG
Found at i:8134531 original size:40 final size:41
Alignment explanation
Indices: 8134487--8134566 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
8134477 GTTGCGATTA
** *
8134487 TCTCGTTGCAATTTTCA-TTTCGCGTTGCGATTTTCATTTC
1 TCTCGTTGCAATAGTCATTTTCACGTTGCGATTTTCATTTC
* *
8134527 TCTCGTTGCGATAGTCATTTTCATGTTGCGATTTTCATTT
1 TCTCGTTGCAATAGTCATTTTCACGTTGCGATTTTCATTT
8134567 TCATGTTGCG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 14 0.41
41 20 0.59
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.50
Consensus pattern (41 bp):
TCTCGTTGCAATAGTCATTTTCACGTTGCGATTTTCATTTC
Found at i:8134579 original size:20 final size:20
Alignment explanation
Indices: 8134491--8134581 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
8134481 CGATTATCTC
* **
8134491 GTTGCAATTTTCA-TTTCGC
1 GTTGCGATTTTCATTTTCAT
8134510 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCAT
**
8134530 CGTTGCGATAGTCATTTTCAT
1 -GTTGCGATTTTCATTTTCAT
8134551 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCAT
8134571 GTTGCGATTTT
1 GTTGCGATTTT
8134582 AAGTTTAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
19 12 0.19
20 33 0.53
21 17 0.27
ACGTcount: A:0.14, C:0.18, G:0.18, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:8135164 original size:20 final size:20
Alignment explanation
Indices: 8135139--8135352 Score: 200
Period size: 20 Copynumber: 10.6 Consensus size: 20
8135129 CTTTAAAAAT
8135139 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
8135159 CGCGTTGCGATTTTA-GG-TA
1 CGCGTTGCGA-TTTACGGATA
* *
8135178 TTGTCATTGCGATTTACGGATA
1 -CG-CGTTGCGATTTACGGATA
* * * *
8135200 CGCATTACGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
8135220 CTCGTTGCGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
8135240 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
8135260 CTCGTTGCAATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
8135280 CGCATTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
* *
8135300 TGTCGTTGCGATTTACAGATA
1 CG-CGTTGCGATTTACGGATA
8135321 CGCGTTGCGATTTTACGGATA
1 CGCGTTGCGA-TTTACGGATA
*
8135342 CTCGTTGCGAT
1 CGCGTTGCGAT
8135353 AGTCAGAATC
Statistics
Matches: 154, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
19 2 0.01
20 102 0.66
21 48 0.31
22 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:8135295 original size:81 final size:81
Alignment explanation
Indices: 8135141--8135413 Score: 331
Period size: 81 Copynumber: 3.4 Consensus size: 81
8135131 TTAAAAATCG
* * * *
8135141 CGTTGCGATTTACGGATACGCGTTGCGATTTTAGGTATTGTCATTGCGATTTACGGATACGCATT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCATT
*
8135206 ACGA-TTTACGTATTCT
66 GCGATTTTACGTATT-T
*
8135222 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCTCGTTGCAATTTACGGATACGCATT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCATT
8135286 GCGATTTTACGTATTGT
66 GCGATTTTACGTATT-T
* * * *
8135303 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGGATACTCGTTGCGATAGT-CAGA-ATCGCA
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGAT-TTACGGATA-CGCA
* *
8135366 TTGCGATTTATATGT-TTG
64 TTGCGATTT-TACGTATTT
* * *
8135384 CGTTGCGATTTTCATATTCGCGTTGCGATT
1 CGTTGCGATTTACAGATACGCGTTGCGATT
8135414 CTGGAAAATC
Statistics
Matches: 170, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
80 35 0.21
81 94 0.55
82 36 0.21
83 5 0.03
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (81 bp):
CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCATT
GCGATTTTACGTATTT
Found at i:8135389 original size:20 final size:20
Alignment explanation
Indices: 8135361--8135413 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
8135351 ATAGTCAGAA
* *
8135361 TCGCATTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
*
8135381 TTGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
8135401 TCGCGTTGCGATT
1 TCGCGTTGCGATT
8135414 CTGGAAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.15, C:0.17, G:0.23, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:8136647 original size:21 final size:21
Alignment explanation
Indices: 8136621--8136665 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8136611 GATTTCTGGG
* *
8136621 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
8136642 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
8136663 CAA
1 CAA
8136666 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:8138410 original size:23 final size:22
Alignment explanation
Indices: 8138351--8138417 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
8138341 TATGGACATC
*
8138351 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
8138373 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
8138395 ATTCTACGGGGCACTTCGGTGCA
1 ATTCTAC-GGGCACTTCGGTGCA
8138418 TTTATACGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 28 0.65
23 15 0.35
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (22 bp):
ATTCTACGGGCACTTCGGTGCA
Found at i:8141589 original size:21 final size:21
Alignment explanation
Indices: 8141552--8141596 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8141542 GATTTCTGGG
*
8141552 CAAGGGGAATCAGTACCCATT
1 CAAGGGGAACCAGTACCCATT
*
8141573 CAAGGGGAACC-GATACCCCTT
1 CAAGGGGAACCAG-TACCCATT
8141594 CAA
1 CAA
8141597 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCAGTACCCATT
Found at i:8142680 original size:15 final size:17
Alignment explanation
Indices: 8142656--8142699 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
8142646 ATAAGCAATG
8142656 TGAC-TATAAGTATATA
1 TGACTTATAAGTATATA
*
8142672 TG-CTT-TAAGT-GATA
1 TGACTTATAAGTATATA
8142686 TGACTTATAAGTAT
1 TGACTTATAAGTAT
8142700 TTCTATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 7
0.71 0.06 0.23
Matches are distributed among these distances:
14 5 0.23
15 9 0.41
16 8 0.36
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (17 bp):
TGACTTATAAGTATATA
Found at i:8143346 original size:23 final size:22
Alignment explanation
Indices: 8143287--8143353 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
8143277 TATGGACATC
*
8143287 ATTCTACGGGCACTACGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
8143309 ATTCTACGGGCACTTCGGTGCA
1 ATTCTACGGGCACTTCGGTGCA
8143331 ATTCTACGGGGCACTTCGGTGCA
1 ATTCTAC-GGGCACTTCGGTGCA
8143354 TTTATACGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 28 0.65
23 15 0.35
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (22 bp):
ATTCTACGGGCACTTCGGTGCA
Found at i:8150739 original size:21 final size:21
Alignment explanation
Indices: 8150709--8150771 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
8150699 TGCCAAAATG
* *
8150709 TAAATCATTATAAAATAATTTT
1 TAAATAATTATAAAAT-ATTAT
*
8150731 TAAA-AATTAAAAAATATTAT
1 TAAATAATTATAAAATATTAT
*
8150751 TAAATTATTATAAAATGATTA
1 TAAATAATTATAAAAT-ATTA
8150772 CATTTATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.24
21 18 0.53
22 8 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TAAATAATTATAAAATATTAT
Found at i:8151686 original size:14 final size:14
Alignment explanation
Indices: 8151648--8151674 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8151638 ATTTATTTTT
8151648 TAATTATATTTATA
1 TAATTATATTTATA
8151662 TAATTATATTTAT
1 TAATTATATTTAT
8151675 TATTTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATTATATTTATA
Found at i:8151938 original size:24 final size:24
Alignment explanation
Indices: 8151909--8151960 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8151899 TGAACCAATG
* *
8151909 AACCGGTAGCATAACCGGTTCGTT
1 AACCGGTAACATAACCGGTTCGCT
*
8151933 AACCGGTAACATGACCGGTTCGCT
1 AACCGGTAACATAACCGGTTCGCT
8151957 AACC
1 AACC
8151961 AGTCCGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (24 bp):
AACCGGTAACATAACCGGTTCGCT
Found at i:8152341 original size:33 final size:33
Alignment explanation
Indices: 8152300--8152363 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
8152290 CATCAAAACT
8152300 AAAAAAATGAATTGTAACTAATGTTTTTATACA
1 AAAAAAATGAATTGTAACTAATGTTTTTATACA
8152333 AAAAAAATGAATTGTAACTAATGTTTTTATA
1 AAAAAAATGAATTGTAACTAATGTTTTTATA
8152364 TATTTTTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (33 bp):
AAAAAAATGAATTGTAACTAATGTTTTTATACA
Found at i:8153755 original size:13 final size:14
Alignment explanation
Indices: 8153737--8153765 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8153727 ATTAATTTTC
8153737 AAAAACA-TATGCT
1 AAAAACATTATGCT
8153750 AAAAACATTATGCT
1 AAAAACATTATGCT
8153764 AA
1 AA
8153766 TAAAATAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (14 bp):
AAAAACATTATGCT
Found at i:8154082 original size:3 final size:3
Alignment explanation
Indices: 8154074--8154104 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
8154064 ATTTAATTTA
8154074 ATT ATT ATT ATT ATT ATT ATT ATT ATCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
8154105 TTTAATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8155288 original size:2 final size:2
Alignment explanation
Indices: 8155281--8155309 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8155271 TAACAAAATA
8155281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8155310 GTCATGTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8161460 original size:59 final size:59
Alignment explanation
Indices: 8161390--8161523 Score: 175
Period size: 57 Copynumber: 2.3 Consensus size: 59
8161380 TTTAGAAAGA
* *
8161390 GAGTCATAGTTTAGGGGGTGAAATTAGAATGTTAAAAAGTTTAAGGACTAATTTTG-AAT
1 GAGTCATAGTTTAGGGGATGAAATTAGAATATTAAAAAGTTTAAGGACTAA-TTTGAAAT
* *
8161449 GAGTCATAGTTT--GGGATGAAATTGGAATATTCAAAAGTTTAAGGACTAATTTGAAAT
1 GAGTCATAGTTTAGGGGATGAAATTAGAATATTAAAAAGTTTAAGGACTAATTTGAAAT
*
8161506 GAAGGTTATAGTTTAGGG
1 G-A-GTCATAGTTTAGGG
8161524 ACATATGATG
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
56 4 0.06
57 37 0.57
58 1 0.02
59 21 0.32
61 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.34
Consensus pattern (59 bp):
GAGTCATAGTTTAGGGGATGAAATTAGAATATTAAAAAGTTTAAGGACTAATTTGAAAT
Found at i:8161507 original size:57 final size:57
Alignment explanation
Indices: 8161339--8161507 Score: 180
Period size: 57 Copynumber: 2.9 Consensus size: 57
8161329 TTTGGATGAA
* * ** *
8161339 TTTGAGGATGAAATTGGAAGATTCAAAATTTTGGGGAAC-AATTTAGAAAGAGAGTCATAG
1 TTTG-GGATGAAATTGGAATATTCAAAAGTTTAAGG-ACTAATTT-GAAA-TGAGTCATAG
* * * *
8161399 TTTAGGGGGTGAAATTAGAATGTTAAAAAGTTTAAGGACTAATTTTG-AATGAGTCATAG
1 TTT--GGGATGAAATTGGAATATTCAAAAGTTTAAGGACTAA-TTTGAAATGAGTCATAG
8161458 TTTGGGATGAAATTGGAATATTCAAAAGTTTAAGGACTAATTTGAAATGA
1 TTTGGGATGAAATTGGAATATTCAAAAGTTTAAGGACTAATTTGAAATGA
8161508 AGGTTATAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
56 4 0.04
57 38 0.42
59 12 0.13
60 7 0.08
61 26 0.29
62 4 0.04
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (57 bp):
TTTGGGATGAAATTGGAATATTCAAAAGTTTAAGGACTAATTTGAAATGAGTCATAG
Found at i:8173326 original size:37 final size:37
Alignment explanation
Indices: 8173250--8173326 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
8173240 TTTTTATATT
*
8173250 TTTAATGTTGTAAACAAATATATATAAATATTATGAA
1 TTTAATGTTGTAAACAAATATATATAAATATTATCAA
* * * *
8173287 TTTAATTTTTTAAAGAAA-ATATATAAATATTTTACAA
1 TTTAATGTTGTAAACAAATATATATAAATATTAT-CAA
8173324 TTT
1 TTT
8173327 GTAATATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 14 0.41
37 20 0.59
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (37 bp):
TTTAATGTTGTAAACAAATATATATAAATATTATCAA
Found at i:8173347 original size:38 final size:35
Alignment explanation
Indices: 8173263--8173347 Score: 80
Period size: 36 Copynumber: 2.3 Consensus size: 35
8173253 AATGTTGTAA
* * *
8173263 ACAAATATATATAAATATTATGAATTTAATTTTTT
1 ACAAATATATATAAATATTATCAATTTAATATTAT
* * *
8173298 AAAGAAAATATATAAATATTTTACAATTTGTAATATTAT
1 ACA-AATATATATAAATATTAT-CAA-TT-TAATATTAT
8173337 ACAAATATATA
1 ACAAATATATA
8173348 ATAAGGACAA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
35 2 0.05
36 16 0.42
37 2 0.05
38 9 0.24
39 9 0.24
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (35 bp):
ACAAATATATATAAATATTATCAATTTAATATTAT
Found at i:8193666 original size:14 final size:14
Alignment explanation
Indices: 8193647--8193676 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8193637 TTTTAGAGCC
8193647 GCACAACAAAACTA
1 GCACAACAAAACTA
8193661 GCACAACAAAACTA
1 GCACAACAAAACTA
8193675 GC
1 GC
8193677 GGGGGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.30, G:0.10, T:0.07
Consensus pattern (14 bp):
GCACAACAAAACTA
Found at i:8201127 original size:18 final size:18
Alignment explanation
Indices: 8201104--8201151 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
8201094 ACTGAAAATA
*
8201104 TTATTATTTTTA-TCAGTT
1 TTATTATTTTTAGGC-GTT
*
8201122 TTATTATTATTAGGCGTT
1 TTATTATTTTTAGGCGTT
8201140 TTAGTTATTTTT
1 TTA-TTATTTTT
8201152 TACTGATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (18 bp):
TTATTATTTTTAGGCGTT
Found at i:8201503 original size:100 final size:100
Alignment explanation
Indices: 8201330--8201518 Score: 342
Period size: 100 Copynumber: 1.9 Consensus size: 100
8201320 AATTTCCCCT
* *
8201330 AAAATGGTGATAGTTATCTTTTAGTAAGATTGAGCACAGCGAATCCCACAAACTACTTCGTCAGC
1 AAAATGGTGATAGGTATCTTTTAGTAAGATTGAGCACAGCGAATCCCACAAACTACTTCGTCACC
*
8201395 AAGTTTCAGAAAAGCTAGGCCGTAATGGGGATACC
66 AAGTTTCAGAAAAGCTACGCCGTAATGGGGATACC
*
8201430 AAAATGGTGATAGGTATCTTTTAGTAAGATTGAGCACAGCGAATCCCACAAACTACTTCGTTACC
1 AAAATGGTGATAGGTATCTTTTAGTAAGATTGAGCACAGCGAATCCCACAAACTACTTCGTCACC
8201495 AAGTTTCAGAAAAGCTACGCCGTA
66 AAGTTTCAGAAAAGCTACGCCGTA
8201519 CTGGCAACGC
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (100 bp):
AAAATGGTGATAGGTATCTTTTAGTAAGATTGAGCACAGCGAATCCCACAAACTACTTCGTCACC
AAGTTTCAGAAAAGCTACGCCGTAATGGGGATACC
Found at i:8216572 original size:35 final size:35
Alignment explanation
Indices: 8216526--8216594 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
8216516 ATGTGCAGGG
*
8216526 GGAACAGATTCCCCCTGGGGGGTATCGATTCCCCA
1 GGAACAGATTCCCCCTAGGGGGTATCGATTCCCCA
8216561 GGAACAGATTCCCCCTAGGGGGTATCGATTCCCC
1 GGAACAGATTCCCCCTAGGGGGTATCGATTCCCC
8216595 CCTAGTGGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (35 bp):
GGAACAGATTCCCCCTAGGGGGTATCGATTCCCCA
Found at i:8216592 original size:20 final size:20
Alignment explanation
Indices: 8216532--8216595 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
8216522 AGGGGGAACA
*
8216532 GATTCCCCCTGGGGGGTATC
1 GATTCCCCCTAGGGGGTATC
*
8216552 GATT-CCCC-A---GG-AAC
1 GATTCCCCCTAGGGGGTATC
8216566 AGATTCCCCCTAGGGGGTATC
1 -GATTCCCCCTAGGGGGTATC
8216587 GATTCCCCC
1 GATTCCCCC
8216596 CTAGTGGTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
14 2 0.06
15 6 0.18
16 4 0.12
17 1 0.03
19 4 0.12
20 15 0.44
21 2 0.06
ACGTcount: A:0.17, C:0.34, G:0.27, T:0.22
Consensus pattern (20 bp):
GATTCCCCCTAGGGGGTATC
Found at i:8222867 original size:36 final size:37
Alignment explanation
Indices: 8222800--8222872 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 37
8222790 TATGTGCAGG
**
8222800 GGGAACAGATTCCCCCTTGGGGGGGTATCGATTCCCC
1 GGGAACAGATTCCCCCTTAAGGGGGTATCGATTCCCC
*
8222837 GGGAATAGATTCCCCC-TAAGGGGGTATCGATTCCCC
1 GGGAACAGATTCCCCCTTAAGGGGGTATCGATTCCCC
8222873 CCTAGTGGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 18 0.55
37 15 0.45
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (37 bp):
GGGAACAGATTCCCCCTTAAGGGGGTATCGATTCCCC
Found at i:8223341 original size:20 final size:20
Alignment explanation
Indices: 8223316--8223354 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8223306 CAGTATGTGC
8223316 AGGGGG-AACAGATTCCCCCT
1 AGGGGGTAAC-GATTCCCCCT
*
8223336 AGGGGGTATCGATTCCCCC
1 AGGGGGTAACGATTCCCCC
8223355 CTAAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (20 bp):
AGGGGGTAACGATTCCCCCT
Found at i:8223958 original size:15 final size:15
Alignment explanation
Indices: 8223938--8223973 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8223928 TTGAGGGTAT
*
8223938 TGTAGTCTTTCGGGA
1 TGTAGTCCTTCGGGA
8223953 TGTAGTCCTTCGGGA
1 TGTAGTCCTTCGGGA
*
8223968 CGTAGT
1 TGTAGT
8223974 GGTCTTACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.17, G:0.33, T:0.36
Consensus pattern (15 bp):
TGTAGTCCTTCGGGA
Found at i:8224707 original size:19 final size:21
Alignment explanation
Indices: 8224662--8224719 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
8224652 ACCCTCATGA
8224662 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TT-AAG
8224685 GGGAACCGATTCCCCC-T-AG
1 GGGAACCGATTCCCCCTTAAG
* *
8224704 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
8224720 CTGGGGTACT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.48
21 1 0.03
23 16 0.48
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (21 bp):
GGGAACCGATTCCCCCTTAAG
Found at i:8224721 original size:20 final size:19
Alignment explanation
Indices: 8224683--8224725 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8224673 CCCCCTTTGA
*
8224683 AGGGGAACCGATTCCCCCT
1 AGGGGAACCGATCCCCCCT
*
8224702 AGGGGAATCGATACCCCCCT
1 AGGGGAACCGAT-CCCCCCT
8224722 -GGGG
1 AGGGG
8224726 TACTAGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.14
Consensus pattern (19 bp):
AGGGGAACCGATCCCCCCT
Found at i:8229980 original size:85 final size:85
Alignment explanation
Indices: 8229879--8230044 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
8229869 ATACAATCAC
* * * * * *
8229879 GACACACGAATGTGTGTCATCTTT-TTTAATGATGTGTGATTCAATGACACGTAATGTAA-TTCA
1 GACACACAAATGTGTGTCATCTTTATTT-ATGACGGGAGATTCAATGACACGCAATG-AACGTCA
*
8229942 TAAATGCGTGTCATAAATTTAT
64 TAAATGCGCGTCATAAATTTAT
* * *
8229964 GACACACAAATGTGTGTCGTCTTTATTTATGACGGGAGCTTCAATGACGCGCAATGAACGTCATA
1 GACACACAAATGTGTGTCATCTTTATTTATGACGGGAGATTCAATGACACGCAATGAACGTCATA
8230029 AATGCGCGTCATAAAT
66 AATGCGCGTCATAAAT
8230045 ACGTGTCATA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 64 0.93
86 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (85 bp):
GACACACAAATGTGTGTCATCTTTATTTATGACGGGAGATTCAATGACACGCAATGAACGTCATA
AATGCGCGTCATAAATTTAT
Found at i:8230038 original size:13 final size:13
Alignment explanation
Indices: 8230022--8230067 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
8230012 GCGCAATGAA
8230022 CGTCATAAATGCG
1 CGTCATAAATGCG
*
8230035 CGTCATAAATACG
1 CGTCATAAATGCG
* *
8230048 TGTCATAAATGCA
1 CGTCATAAATGCG
8230061 CGTCATA
1 CGTCATA
8230068 GATTTATGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (13 bp):
CGTCATAAATGCG
Found at i:8230290 original size:32 final size:32
Alignment explanation
Indices: 8230249--8230320 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
8230239 ACTTCAAATG
*
8230249 AATAATTTGACT-AGTGAATAAGGTTATTTTAA
1 AATAATTTGACTCA-TGAATAAGATTATTTTAA
*
8230281 AATAATTTGATTCATGAATAAGATTATTTTAA
1 AATAATTTGACTCATGAATAAGATTATTTTAA
*
8230313 TATAATTT
1 AATAATTT
8230321 AATATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 35 0.97
33 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.11, T:0.44
Consensus pattern (32 bp):
AATAATTTGACTCATGAATAAGATTATTTTAA
Found at i:8232934 original size:3 final size:3
Alignment explanation
Indices: 8232926--8232958 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
8232916 TTAAATAAAA
8232926 AAT AAT AAT AAT AAT AAT -AT AATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
8232959 TTTTAAATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:8242085 original size:22 final size:23
Alignment explanation
Indices: 8242060--8242112 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
8242050 TATATATATT
*
8242060 ATAAATATTTTTATT-GAAATTA
1 ATAAATATTTTGATTGGAAATTA
*
8242082 ATAAAT-CTTTGATTGGAAATTA
1 ATAAATATTTTGATTGGAAATTA
8242104 ATATAATAT
1 ATA-AATAT
8242113 ATAAAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 6 0.24
22 16 0.64
23 3 0.12
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (23 bp):
ATAAATATTTTGATTGGAAATTA
Found at i:8251580 original size:20 final size:20
Alignment explanation
Indices: 8251557--8251613 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
8251547 TTATTAGTGA
8251557 GAATAAAAAATTATCAGTAG
1 GAATAAAAAATTATCAGTAG
8251577 GAATAAAAAATTATCAGTAG
1 GAATAAAAAATTATCAGTAG
*
8251597 GAATAAAAGATTATCAG
1 GAATAAAAAATTATCAG
8251614 AGAATATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.25
Consensus pattern (20 bp):
GAATAAAAAATTATCAGTAG
Found at i:8252126 original size:17 final size:17
Alignment explanation
Indices: 8252104--8252137 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8252094 CAACGGGAGA
*
8252104 ATGTGAATTACATTCTC
1 ATGTGAATCACATTCTC
8252121 ATGTGAATCACATTCTC
1 ATGTGAATCACATTCTC
8252138 CAAACCAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (17 bp):
ATGTGAATCACATTCTC
Found at i:8254502 original size:24 final size:24
Alignment explanation
Indices: 8254475--8254522 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8254465 CGTTCATTTA
*
8254475 CGTTCGTGAACGTTCGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
* **
8254499 CGTTTATGTTCGTTCGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
8254523 AGTTTATGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.27, T:0.48
Consensus pattern (24 bp):
CGTTCATGAACGTTCGGTTATGTT
Found at i:8254527 original size:24 final size:24
Alignment explanation
Indices: 8254485--8254533 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
8254475 CGTTCGTGAA
*
8254485 CGTTCGGTTATGTTCGTTTATGTT
1 CGTTCGGTTATGTTAGTTTATGTT
8254509 CGTTCGGTTATGTTAGTTTATGTT
1 CGTTCGGTTATGTTAGTTTATGTT
8254533 C
1 C
8254534 ATTCATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.10, C:0.12, G:0.24, T:0.53
Consensus pattern (24 bp):
CGTTCGGTTATGTTAGTTTATGTT
Found at i:8254543 original size:24 final size:24
Alignment explanation
Indices: 8254491--8254546 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
8254481 TGAACGTTCG
* * *
8254491 GTTATGTTCGTTTATGTTCGTTCG
1 GTTATGTTAGTTTATGTTCATTCA
8254515 GTTATGTTAGTTTATGTTCATTCA
1 GTTATGTTAGTTTATGTTCATTCA
*
8254539 TTTATGTT
1 GTTATGTT
8254547 TAACTCAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.14, C:0.09, G:0.20, T:0.57
Consensus pattern (24 bp):
GTTATGTTAGTTTATGTTCATTCA
Found at i:8255629 original size:16 final size:16
Alignment explanation
Indices: 8255608--8255650 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
8255598 CCATCGTTTA
*
8255608 TGTTCGTTTATATTTG
1 TGTTCGTTTATATTCG
*
8255624 TGTTCGTTTATGTTCG
1 TGTTCGTTTATATTCG
8255640 TGTTCGTTTAT
1 TGTTCGTTTAT
8255651 TTATTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.09, G:0.21, T:0.60
Consensus pattern (16 bp):
TGTTCGTTTATATTCG
Found at i:8259190 original size:19 final size:20
Alignment explanation
Indices: 8259161--8259211 Score: 86
Period size: 19 Copynumber: 2.6 Consensus size: 20
8259151 AACGCGATCC
8259161 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
8259181 CCAG-ATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
8259200 CCAAAATCGCAA
1 CCAGAATCGCAA
8259212 CGCGATTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:8259288 original size:18 final size:19
Alignment explanation
Indices: 8259265--8259352 Score: 69
Period size: 18 Copynumber: 4.7 Consensus size: 19
8259255 GCGATTTCCA
*
8259265 AAATCGCAACGC-AATA-T
1 AAATCGCAACGCGAACACT
8259282 GAAATCGCAACGCGAACACT
1 -AAATCGCAACGCGAACACT
*
8259302 AAATCGCAACGCG-TC-CGT
1 AAATCGCAACGCGAACAC-T
* *
8259320 AAATCGCAACGTGTATC-CGT
1 AAATCGCAACGCG-AACAC-T
8259340 AAATCGCAACGCG
1 AAATCGCAACGCG
8259353 TATGGGTAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.02
18 26 0.43
19 16 0.26
20 18 0.30
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.16
Consensus pattern (19 bp):
AAATCGCAACGCGAACACT
Found at i:8259340 original size:20 final size:20
Alignment explanation
Indices: 8259283--8259453 Score: 183
Period size: 20 Copynumber: 8.7 Consensus size: 20
8259273 ACGCAATATG
*
8259283 AAATCGCAACGCG-AACAC-T
1 AAATCGCAACGCGTATC-CGT
8259302 AAATCGCAACGCG--TCCGT
1 AAATCGCAACGCGTATCCGT
*
8259320 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
8259340 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
8259360 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
8259380 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
8259400 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
8259420 AAAAATCGCAACGCGTATCCGT
1 --AAATCGCAACGCGTATCCGT
8259442 -AATCGCAACGCG
1 AAATCGCAACGCG
8259454 ATATTTAAAG
Statistics
Matches: 128, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
17 1 0.01
18 14 0.11
19 26 0.20
20 71 0.55
22 15 0.12
23 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:8259868 original size:33 final size:33
Alignment explanation
Indices: 8259829--8259899 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
8259819 TTCACTTAGA
*
8259829 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
8259862 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
8259895 TTTCA
1 TTTCA
8259900 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:8260154 original size:14 final size:14
Alignment explanation
Indices: 8260105--8260191 Score: 70
Period size: 14 Copynumber: 5.7 Consensus size: 14
8260095 TTTCATTTCG
8260105 CGTTGCGA-T-TCT
1 CGTTGCGATTCTCT
*
8260117 CGTTGCGATTTTCATTCG
1 CGTTGCGA--TTC--TCT
8260135 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
8260149 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
8260166 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
8260182 CGTTGCGATT
1 CGTTGCGATT
8260192 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 2, Indels: 20
0.74 0.02 0.24
Matches are distributed among these distances:
12 8 0.13
14 20 0.32
15 2 0.03
16 8 0.13
17 5 0.08
18 11 0.18
19 8 0.13
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:8260171 original size:19 final size:18
Alignment explanation
Indices: 8260117--8260192 Score: 71
Period size: 14 Copynumber: 4.6 Consensus size: 18
8260107 TTGCGATTCT
8260117 CGTTGCGATTTTCAT-TCG
1 CGTTGCGA-TTTCATCTCG
8260135 CGTTGCGA-TTC-TCT--
1 CGTTGCGATTTCATCTCG
8260149 CGTTGCGATTGTCATCTCG
1 CGTTGCGATT-TCATCTCG
8260168 CGTTGCGA-TTC-TCT--
1 CGTTGCGATTTCATCTCG
8260182 CGTTGCGATTT
1 CGTTGCGATTT
8260193 TCATTTCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 17
0.75 0.00 0.25
Matches are distributed among these distances:
14 16 0.31
15 4 0.08
16 9 0.18
17 5 0.10
18 9 0.18
19 8 0.16
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (18 bp):
CGTTGCGATTTCATCTCG
Found at i:8260174 original size:33 final size:32
Alignment explanation
Indices: 8260088--8260197 Score: 179
Period size: 33 Copynumber: 3.4 Consensus size: 32
8260078 CAAAATCGCA
8260088 TTGCGATTTTCATTTCGCGTTGCGA-T-TCTCG
1 TTGCGATTTTCA-TTCGCGTTGCGATTCTCTCG
8260119 TTGCGATTTTCATTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTCGCGTTGCGATTCTCTCG
*
8260151 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCAT-TCGCGTTGCGATTCTCTCG
8260184 TTGCGATTTTCATT
1 TTGCGATTTTCATT
8260198 TCAACCAAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
30 12 0.16
31 13 0.18
32 18 0.24
33 31 0.42
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.45
Consensus pattern (32 bp):
TTGCGATTTTCATTCGCGTTGCGATTCTCTCG
Found at i:8262160 original size:92 final size:93
Alignment explanation
Indices: 8261863--8262233 Score: 647
Period size: 92 Copynumber: 4.1 Consensus size: 93
8261853 TAGATTGCTT
*
8261863 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
8261928 TTTGTCTTTG-TTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
8261954 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAAC--TGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
8262016 -TTGTCTTTGTTTTGTCTTTTGG-TGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
8262042 AGT-AATTTGTTCGGTTGCTGCCAATTC-GCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
8262105 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
8262133 AGTAAATTTGTTCGGTTGCTGCCAATTCTGGCTAAACTGTGTA-TCTTTAACACTGTGAAATAGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCT-GCTAAACTGTGTATTCTTTAACACTGTGAAATAGT
8262197 ATTTGTC-TTGTTTTGTCTTTTGGTTGAA
65 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
8262225 AGTAAATTT
1 AGTAAATTT
8262234 ATCCATTCAA
Statistics
Matches: 269, Mismatches: 1, Indels: 19
0.93 0.00 0.07
Matches are distributed among these distances:
86 7 0.03
87 35 0.13
88 42 0.16
89 26 0.10
90 22 0.08
91 42 0.16
92 54 0.20
93 28 0.10
94 13 0.05
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:8262301 original size:19 final size:19
Alignment explanation
Indices: 8262277--8262403 Score: 105
Period size: 19 Copynumber: 7.3 Consensus size: 19
8262267 TAGTTTACTT
* *
8262277 TCGCAACACGAAATTAAAA
1 TCGCAACGCGAAATCAAAA
*
8262296 TCGCAACGCGAAA-CCAAA
1 TCGCAACGCGAAATCAAAA
*
8262314 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATCAAAA
*
8262333 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAATCAAAA
*
8262347 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATCAAAA
*
8262366 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAATCAAAA
*
8262380 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATCAAAA
8262399 TCGCA
1 TCGCA
8262404 TTGCGATTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
14 19 0.22
15 2 0.02
16 4 0.05
17 4 0.05
18 18 0.21
19 40 0.46
ACGTcount: A:0.46, C:0.28, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAATCAAAA
Done.