Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008087.1 Hibiscus syriacus cultivar Beakdansim tig00110597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8279816
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 37
Found at i:1955647 original size:12 final size:12
Alignment explanation
Indices: 1955630--1955654 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1955620 GTGTTTGACC
1955630 TTGGTCTATTTG
1 TTGGTCTATTTG
1955642 TTGGTCTATTTG
1 TTGGTCTATTTG
1955654 T
1 T
1955655 GGTTGAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.24, T:0.60
Consensus pattern (12 bp):
TTGGTCTATTTG
Found at i:1957290 original size:2 final size:2
Alignment explanation
Indices: 1957283--1957320 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
1957273 AATCGAATAC
1957283 TA TA TA TA TA T- TA TA TA TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1957321 GGAGCGAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1957299 original size:11 final size:10
Alignment explanation
Indices: 1957283--1957320 Score: 62
Period size: 9 Copynumber: 4.0 Consensus size: 10
1957273 AATCGAATAC
1957283 TATATATATA
1 TATATATATA
1957293 T-TATATATA
1 TATATATATA
1957302 TA-ATATATA
1 TATATATATA
1957311 TATATATATA
1 TATATATATA
1957321 GGAGCGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TATATATATA
Found at i:1969692 original size:42 final size:42
Alignment explanation
Indices: 1969602--1969738 Score: 224
Period size: 42 Copynumber: 3.3 Consensus size: 42
1969592 TCCAAGTTCG
*
1969602 CGTTGCAATAGTCGAAGTTCGCGTTGCGA-TT-TTCCAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
*
1969642 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
* *
1969684 CATTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCAAAATT
1 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
1969726 CGTTGCGATAGTC
1 CGTTGCGATAGTC
1969739 CAAAATCGCA
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 28 0.31
41 2 0.02
42 59 0.66
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (42 bp):
CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
Found at i:1969711 original size:21 final size:21
Alignment explanation
Indices: 1969577--1969713 Score: 129
Period size: 21 Copynumber: 6.6 Consensus size: 21
1969567 GATTTACATA
* *
1969577 TTCGCATTGCAATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
1969598 TTCGCGTTGCAATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
** *
1969619 TTCGCGTTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
*
1969640 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
*
1969659 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
* *
1969682 TT--CATTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
1969701 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
1969714 TTATTCAAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
19 24 0.26
21 60 0.65
23 9 0.10
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:1970053 original size:81 final size:83
Alignment explanation
Indices: 1969955--1970200 Score: 380
Period size: 81 Copynumber: 3.0 Consensus size: 83
1969945 CCAGTCGTTG
*
1969955 CGAATTTGGAATAAATCGCAACGCGAACTT-ACTATCGCAACGAATTTGGAATAAATTGCAACGC
1 CGAATTTGGAATAAATCGCAACGCGAACTTGACTATCGCAACGAATTTGGAATAAATCGCAACGC
*
1970019 GAACTTCGATTATCGCAA
66 GAACTTCGACTATCGCAA
* *
1970037 CGAA-TTGGAATAAATCGCAACGCGGACTTCGACTATTGCAACGAATTTGGAATAAATCGCAACG
1 CGAATTTGGAATAAATCGCAACGCGAACTT-GACTATCGCAACGAATTTGGAATAAATCGCAACG
1970101 C-AACTTCGACTATCGCAA
65 CGAACTTCGACTATCGCAA
1970119 CGAATTTGG-A-AAATCGCAACGCGAACTTTGACTATCGCAACGAATTTGG-A-AAATCGCAACG
1 CGAATTTGGAATAAATCGCAACGCGAAC-TTGACTATCGCAACGAATTTGGAATAAATCGCAACG
*
1970180 CGAACTTCGACTATTGCAA
65 CGAACTTCGACTATCGCAA
1970199 CG
1 CG
1970201 CGAACTTGGA
Statistics
Matches: 152, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
79 12 0.08
80 19 0.12
81 58 0.38
82 27 0.18
83 36 0.24
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (83 bp):
CGAATTTGGAATAAATCGCAACGCGAACTTGACTATCGCAACGAATTTGGAATAAATCGCAACGC
GAACTTCGACTATCGCAA
Found at i:1970057 original size:41 final size:42
Alignment explanation
Indices: 1969955--1970200 Score: 382
Period size: 40 Copynumber: 6.0 Consensus size: 42
1969945 CCAGTCGTTG
1969955 CGAATTTGGAATAAATCGCAACGCGAACTT--ACTATCGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
* *
1969995 CGAATTTGGAATAAATTGCAACGCGAACTTCGATTATCGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
* *
1970037 CGAA-TTGGAATAAATCGCAACGCGGACTTCGACTATTGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
1970078 CGAATTTGGAATAAATCGCAACGC-AACTTCGACTATCGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
*
1970119 CGAATTTGG-A-AAATCGCAACGCGAACTTTGACTATCGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
*
1970159 CGAATTTGG-A-AAATCGCAACGCGAACTTCGACTATTGCAA
1 CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
1970199 CG
1 CG
1970201 CGAACTTGGA
Statistics
Matches: 191, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 12 0.06
40 86 0.45
41 61 0.32
42 32 0.17
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (42 bp):
CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
Found at i:1970136 original size:19 final size:19
Alignment explanation
Indices: 1970074--1970179 Score: 97
Period size: 19 Copynumber: 5.3 Consensus size: 19
1970064 TTCGACTATT
1970074 GCAACGAATTTGGAATAAATC
1 GCAACGAATTTGG-A-AAATC
* * **
1970095 GCAACGCAACTTCGACTATC
1 GCAACG-AATTTGGAAAATC
1970115 GCAACGAATTTGGAAAATC
1 GCAACGAATTTGGAAAATC
**
1970134 GCAACGCGAACTTT-GACTATC
1 GCAA--CGAA-TTTGGAAAATC
1970155 GCAACGAATTTGGAAAATC
1 GCAACGAATTTGGAAAATC
1970174 GCAACG
1 GCAACG
1970180 CGAACTTCGA
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.04
19 28 0.41
20 9 0.13
21 20 0.29
22 8 0.12
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (19 bp):
GCAACGAATTTGGAAAATC
Found at i:1970155 original size:21 final size:21
Alignment explanation
Indices: 1969969--1970224 Score: 125
Period size: 21 Copynumber: 12.6 Consensus size: 21
1969959 TTTGGAATAA
1969969 ATCGCAACGCGAAC-TT-ACT
1 ATCGCAACGCGAACTTTGACT
*
1969988 ATCGCAA--CGAA-TTTGGAAT
1 ATCGCAACGCGAACTTT-GACT
* * *
1970007 AAATTGCAACGCGAACTTCGATT
1 --ATCGCAACGCGAACTTTGACT
* *
1970030 ATCGCAA--CGAA-TTGGAAT
1 ATCGCAACGCGAACTTTGACT
* *
1970048 AAATCGCAACGCGGACTTCGACT
1 --ATCGCAACGCGAACTTTGACT
* *
1970071 ATTGCAA--CGAA-TTTGGAAT
1 ATCGCAACGCGAACTTT-GACT
*
1970090 AAATCGCAACGC-AACTTCGACT
1 --ATCGCAACGCGAACTTTGACT
**
1970112 ATCGCAA--CGAA-TTTGGAAA
1 ATCGCAACGCGAACTTT-GACT
1970131 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTTGACT
**
1970152 ATCGCAA--CGAA-TTTGGAAA
1 ATCGCAACGCGAACTTT-GACT
*
1970171 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTTGACT
* *
1970192 ATTGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTTGACT
*
1970213 ATCGCAATGCGA
1 ATCGCAACGCGA
1970225 TTATGCGAAT
Statistics
Matches: 178, Mismatches: 31, Indels: 54
0.68 0.12 0.21
Matches are distributed among these distances:
17 6 0.03
18 13 0.07
19 43 0.24
20 14 0.08
21 72 0.40
22 13 0.07
23 15 0.08
24 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTTGACT
Found at i:1970271 original size:21 final size:21
Alignment explanation
Indices: 1970242--1970294 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
1970232 AATATGTAAA
*
1970242 TCGCATTGCGATAGTCCAAGT
1 TCGCGTTGCGATAGTCCAAGT
*
1970263 TCGCGTTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCCAAGT
*
1970284 TCGTGTTGCGA
1 TCGCGTTGCGA
1970295 ATCTGGAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCCAAGT
Found at i:1970696 original size:171 final size:160
Alignment explanation
Indices: 1970371--1970702 Score: 531
Period size: 162 Copynumber: 2.0 Consensus size: 160
1970361 AAAAAAGATA
1970371 TTAAAATCGTATATTATAAGGCATTTTTGGTCACTGAGGTATTTCTCATATAAAGACATGAAAGT
1 TTAAAATCGTATATTATAAGGCATTTTTGGTCACTGAGGTATTTCTCATATAAAGACATGAAAGT
1970436 GCCGGAATTTTTTTTTGTTTCCGTGTATCGAATATAATTACAATCAAAATTCATGTATTATATGA
66 GCCGGAATTTTTTTTTGTTTCCGTGTATCGAATATAATTACAATCAAAATTCATG--TTATATGA
1970501 TATGTTAATGATACTGGGGTAGTAAGAATAGG
129 TATGTTAATGATACTGGGGTAGTAAGAATAGG
1970533 TTAAAATCGTATATTATAAGGCATTTTTGGTCACTGAGGTTATTTTCTCATATATAAAAGACATG
1 TTAAAATCGTATATTATAAGGCATTTTTGGTCACTGAGG-TA-TTTCTC--ATAT-AAAGACATG
1970598 AAAGATGCCGGAATTTTTTTTTTTGTTTCCGTGTATCGAATATAATTACAAAAAATCAAAATTCA
61 AAAG-TGCCGGAA--TTTTTTTTTGTTTCCGTGTATCGAATATAATTAC----AATCAAAATTCA
1970663 TG-TATATGATATGTTAATGATACTGGGGTAGTAAGAATAG
119 TGTTATATGATATGTTAATGATACTGGGGTAGTAAGAATAG
1970703 TATATTTTAT
Statistics
Matches: 158, Mismatches: 0, Indels: 15
0.91 0.00 0.09
Matches are distributed among these distances:
162 39 0.25
163 2 0.01
164 6 0.04
166 4 0.03
167 13 0.08
168 8 0.05
170 34 0.22
171 38 0.24
174 14 0.09
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (160 bp):
TTAAAATCGTATATTATAAGGCATTTTTGGTCACTGAGGTATTTCTCATATAAAGACATGAAAGT
GCCGGAATTTTTTTTTGTTTCCGTGTATCGAATATAATTACAATCAAAATTCATGTTATATGATA
TGTTAATGATACTGGGGTAGTAAGAATAGG
Found at i:1976068 original size:20 final size:20
Alignment explanation
Indices: 1976045--1976109 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
1976035 GAATATGTAA
*
1976045 ATCGCAACGTGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
1976065 ATCGCAACGCGATTCTAACT
1 ATCGCAACGCGATTCTGACT
*
1976085 ATCTCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
1976105 ATCGC
1 ATCGC
1976110 GTTACGATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:1976237 original size:22 final size:22
Alignment explanation
Indices: 1976212--1976275 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
1976202 TATATCTCGT
*
1976212 ATCTCCGGCGACATCCGTCTCC
1 ATCTCCGGCGAAATCCGTCTCC
* ** *
1976234 ATCTCCGACGAAATTTGTCCCC
1 ATCTCCGGCGAAATCCGTCTCC
1976256 ATCTCCGGCGAAATCCGTCT
1 ATCTCCGGCGAAATCCGTCT
1976276 ATCTCCATCT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.19, C:0.39, G:0.17, T:0.25
Consensus pattern (22 bp):
ATCTCCGGCGAAATCCGTCTCC
Found at i:1976702 original size:20 final size:19
Alignment explanation
Indices: 1976649--1976702 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
1976639 AAATCGCAAC
1976649 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
* * * *
1976668 GCGATAGTCATTTTCGTGTT
1 GCGAT-TTTAGTTTCGCGTT
1976688 GCGATTTTAAGTTTC
1 GCGATTTT-AGTTTC
1976703 AGAAACTATT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.15, C:0.15, G:0.24, T:0.46
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:1976953 original size:19 final size:19
Alignment explanation
Indices: 1976929--1976967 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
1976919 TTTACGATAC
* *
1976929 TAGAGATCGCGTTGCGATT
1 TAGAGATCACATTGCGATT
1976948 TAGAGATCACATTGCGATT
1 TAGAGATCACATTGCGATT
1976967 T
1 T
1976968 TGTTGGTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (19 bp):
TAGAGATCACATTGCGATT
Found at i:1977814 original size:35 final size:35
Alignment explanation
Indices: 1977772--1978025 Score: 231
Period size: 35 Copynumber: 7.5 Consensus size: 35
1977762 AAGTATAATG
* *
1977772 CTTCCTTCTATTCGACTTGAATCGAAAGTGTGATA
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
* * * *
1977807 CTTCCTTCCGTTCTACTTGAATTGAAAGTGCGATG
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
* * * *
1977842 CTT-CTTCCGTTCTACTTAAATCGAAAGTGCGATG
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
* * * * *
1977876 CTTTCTTCCGTTCTACTTGAAT---TA-TGTG--A
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
* *
1977905 -TTCCTTCTGCTCGACTTGAATCGAAAGTGTGATA
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
*
1977939 CTTCCTTCTGCTCGACTTGAATCGAAAGTGCGATGA
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGAT-A
* *
1977975 -TTCTTTCTGTTCGAC-TGAATCGAAAGTGCGATG
1 CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
* *
1978008 CTTCCTTCCGTTCTACTT
1 CTTCCTTCTGTTCGACTT
1978026 TATTCACTTT
Statistics
Matches: 184, Mismatches: 24, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
28 17 0.09
31 4 0.02
32 5 0.03
34 62 0.34
35 95 0.52
36 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (35 bp):
CTTCCTTCTGTTCGACTTGAATCGAAAGTGCGATA
Found at i:1977864 original size:69 final size:68
Alignment explanation
Indices: 1977776--1978025 Score: 287
Period size: 69 Copynumber: 3.7 Consensus size: 68
1977766 ATAATGCTTC
* *
1977776 CTTCTATTCGACTTGAATCGAAAGTGTGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGCGAT
1 CTTCTGTTCGACTTGAATCGAAAGTGCGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGCGAT
1977841 GCTT
66 G-TT
* * * * * *
1977845 CTTCCGTTCTACTTAAATCGAAAGTGCGATGCTTTCTTCCGTTCTACTTGAATT---A-TGTGAT
1 CTTCTGTTCGACTTGAATCGAAAGTGCGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGCGAT
*
1977906 -TC
66 GTT
* * * * * *
1977908 CTTCTGCTCGACTTGAATCGAAAGTGTGATACTTCCTTCTGCTCGACTTGAATCGAAAGTGCGAT
1 CTTCTGTTCGACTTGAATCGAAAGTGCGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGCGAT
1977973 GATT
66 G-TT
*
1977977 CTTTCTGTTCGAC-TGAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTT
1 C-TTCTGTTCGACTTGAATCGAAAGTGCGATACTTCCTTCCGTTCTACTT
1978026 TATTCACTTT
Statistics
Matches: 146, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
63 44 0.30
65 5 0.03
66 2 0.01
67 5 0.03
69 80 0.55
70 10 0.07
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (68 bp):
CTTCTGTTCGACTTGAATCGAAAGTGCGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGCGAT
GTT
Found at i:1978010 original size:132 final size:132
Alignment explanation
Indices: 1977773--1978025 Score: 391
Period size: 132 Copynumber: 1.9 Consensus size: 132
1977763 AGTATAATGC
* * * *
1977773 TTCCTTCTATTCGACTTGAATCGAAAGTGTGATACTTCCTTCCGTTCTACTTGAATTGAAAGTGC
1 TTCCTTCTACTCGACTTGAATCGAAAGTGTGATACTTCCTTCCGCTCGACTTGAATCGAAAGTGC
* * *
1977838 GATGCTTCTTCCGTTCTACTTAAATCGAAAGTGCGATGCTTTCTTCCGTTCTACTTGAATTATGT
66 GATGATTCTTCCGTTCGACTTAAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTTGAATTATGT
1977903 GA
131 GA
* *
1977905 TTCCTTCTGCTCGACTTGAATCGAAAGTGTGATACTTCCTTCTGCTCGACTTGAATCGAAAGTGC
1 TTCCTTCTACTCGACTTGAATCGAAAGTGTGATACTTCCTTCCGCTCGACTTGAATCGAAAGTGC
* *
1977970 GATGATTCTTTCTGTTCGAC-TGAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTT
66 GATGATTC-TTCCGTTCGACTTAAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTT
1978026 TATTCACTTT
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 100 0.92
133 9 0.08
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (132 bp):
TTCCTTCTACTCGACTTGAATCGAAAGTGTGATACTTCCTTCCGCTCGACTTGAATCGAAAGTGC
GATGATTCTTCCGTTCGACTTAAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTTGAATTATGT
GA
Found at i:1980201 original size:16 final size:16
Alignment explanation
Indices: 1980180--1980220 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
1980170 CGATGAGAAT
1980180 GGAAGCAACTAGTAGC
1 GGAAGCAACTAGTAGC
1980196 GGAAGCAACTAGTAGC
1 GGAAGCAACTAGTAGC
*
1980212 AGAAGCAAC
1 GGAAGCAAC
1980221 AGAACAACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.41, C:0.20, G:0.29, T:0.10
Consensus pattern (16 bp):
GGAAGCAACTAGTAGC
Found at i:1983227 original size:17 final size:18
Alignment explanation
Indices: 1983188--1983227 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
1983178 AACATTTGGA
*
1983188 TCAAT-TTATTTTTCAAG
1 TCAATATTATGTTTCAAG
1983205 TC-ATATTATGTTTC-AG
1 TCAATATTATGTTTCAAG
1983221 TCAATAT
1 TCAATAT
1983228 GATTTTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.50
Consensus pattern (18 bp):
TCAATATTATGTTTCAAG
Found at i:2014043 original size:15 final size:15
Alignment explanation
Indices: 2014023--2014052 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2014013 ATTAAACAAA
*
2014023 TTTAAATATTTAAAT
1 TTTAAATACTTAAAT
2014038 TTTAAATACTTAAAT
1 TTTAAATACTTAAAT
2014053 AATTTTTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTAAATACTTAAAT
Found at i:2014414 original size:20 final size:20
Alignment explanation
Indices: 2014362--2014417 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
2014352 ATTCTGACTA
2014362 TCGCATTGCGATTTACCAAAT
1 TCGCA-TGCGATTTACCAAAT
* * *
2014383 TCGCGTTGCGATTTTCCTAAT
1 TCGC-ATGCGATTTACCAAAT
2014404 TCGCATGCGATTTA
1 TCGCATGCGATTTA
2014418 TACGCATTGC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (20 bp):
TCGCATGCGATTTACCAAAT
Found at i:2014448 original size:20 final size:20
Alignment explanation
Indices: 2014342--2014449 Score: 66
Period size: 20 Copynumber: 5.5 Consensus size: 20
2014332 GTTTCCAGAT
**
2014342 TCGCAATGCGATTCTGACT-A
1 TCGCAATGCGATT-TTCCTAA
* * *
2014362 TCGCATTGCGATTTACCAAA
1 TCGCAATGCGATTTTCCTAA
**
2014382 TTCGCGTTGCGATTTTCCTAA
1 -TCGCAATGCGATTTTCCTAA
*
2014403 TTCGC-ATGCGA-TTT-AT-A
1 -TCGCAATGCGATTTTCCTAA
*
2014420 -CGCATTGCGATTTTCCTAA
1 TCGCAATGCGATTTTCCTAA
2014439 TCGCAATGCGA
1 TCGCAATGCGA
2014450 ATACGTAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
15 3 0.04
16 5 0.07
17 4 0.06
18 2 0.03
19 6 0.09
20 27 0.39
21 22 0.32
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (20 bp):
TCGCAATGCGATTTTCCTAA
Found at i:2015156 original size:40 final size:41
Alignment explanation
Indices: 2015071--2015196 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 41
2015061 CTAAACTTAA
2015071 AATCGCAACATGA-AAATGAAAATCGCAAC-ACGAAAATGAC
1 AATCGCAACA-GAGAAATGAAAATCGCAACGACGAAAATGAC
* *
2015111 TATCGCAACGAGAGAAATGAAAA-CGCAACGA-GAGAATCG-C
1 AATCGCAAC-AGAGAAATGAAAATCGCAACGACGAAAAT-GAC
* *
2015151 AATCGCAAC-GCGAAATGAAAATCGCAACG-CG-AAATGAA
1 AATCGCAACAGAGAAATGAAAATCGCAACGACGAAAATGAC
2015189 AATCGCAA
1 AATCGCAA
2015197 TACGCGAAAC
Statistics
Matches: 73, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
37 1 0.01
38 22 0.30
39 8 0.11
40 30 0.41
41 12 0.16
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (41 bp):
AATCGCAACAGAGAAATGAAAATCGCAACGACGAAAATGAC
Found at i:2015203 original size:21 final size:19
Alignment explanation
Indices: 2015069--2015216 Score: 120
Period size: 20 Copynumber: 7.5 Consensus size: 19
2015059 TTCTAAACTT
**
2015069 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
*
2015089 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
** *
2015109 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
*
2015130 AAAA-CGCAACGAGAGAATCG
1 AAAATCGCAACGCGA-AAT-G
*
2015150 -CAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
2015168 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
**
2015187 AAAATCGCAATACGCGAAACC
1 AAAATCGC-A-ACGCGAAATG
2015208 AAAATCGCA
1 AAAATCGCA
2015217 TTGCGATTTT
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
18 5 0.05
19 33 0.31
20 46 0.43
21 23 0.21
22 1 0.01
ACGTcount: A:0.49, C:0.22, G:0.19, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:2015254 original size:14 final size:14
Alignment explanation
Indices: 2015235--2015289 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
2015225 TTCATTTCGT
2015235 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
*
2015249 GTTGCGATTTTCATTTCGC
1 GTTGCGA--TTC---TCTC
2015268 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
2015282 GTTGCGAT
1 GTTGCGAT
2015290 AGTCATTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.24, G:0.24, T:0.44
Consensus pattern (14 bp):
GTTGCGATTCTCTC
Found at i:2015259 original size:33 final size:33
Alignment explanation
Indices: 2015217--2015338 Score: 145
Period size: 33 Copynumber: 3.5 Consensus size: 33
2015207 CAAAATCGCA
*
2015217 TTGCGATTTTCATTTCGTGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
2015250 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
** *
2015283 TTGCGATAGTCATTTCCGCATTGCGATTTTCATTCTCTCG
1 TTGCGATTTTCATTT-CGCGTTGCG------ATTCTCTCG
2015323 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
2015339 AACCAAAAGA
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
33 45 0.59
34 8 0.11
39 1 0.01
40 22 0.29
ACGTcount: A:0.11, C:0.23, G:0.19, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:2015315 original size:20 final size:19
Alignment explanation
Indices: 2015217--2015338 Score: 97
Period size: 20 Copynumber: 6.8 Consensus size: 19
2015207 CAAAATCGCA
2015217 TTGCGATTTTCATTTCGT-G
1 TTGCGATTTTCATTTC-TCG
2015236 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCTCG
*
2015250 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCTCG
2015269 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCTCG
**
2015283 TTGCGATAGTCATTTC-CG
1 TTGCGATTTTCATTTCTCG
2015301 CATTGCGATTTTCATTCTCTCG
1 --TTGCGATTTTCATT-TCTCG
2015323 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
2015339 AACCAAAAGA
Statistics
Matches: 83, Mismatches: 5, Indels: 30
0.70 0.04 0.25
Matches are distributed among these distances:
13 1 0.01
14 19 0.23
16 5 0.06
17 6 0.07
18 2 0.02
19 20 0.24
20 26 0.31
21 2 0.02
22 2 0.02
ACGTcount: A:0.11, C:0.23, G:0.19, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCTCG
Found at i:2017285 original size:93 final size:92
Alignment explanation
Indices: 2017026--2017347 Score: 489
Period size: 94 Copynumber: 3.5 Consensus size: 92
2017016 TAGATTGCTT
* *
2017026 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAA-TTGT-TT-ATTAACACTGTGAAGTTAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTTGTATTCTTTAACACTGTGAAGTTAGTA
2017088 TTTGTCTTTTGTTTTGTCTTTTGGTTAA
66 TTTGTC-TTTGTTTTGTCTTTTGGTTAA
2017116 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACT-TGTATTCTTTAACACTGTGAAGTTAGT
*
2017181 ATTTGTTTTTGTTTTGTCTTTTGGTTGAA
65 ATTTGTCTTTGTTTTGTCTTTTGGTT-AA
*
2017210 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGT-AAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACT-TGTATTCTTTAACACTGTGAAGTTAGT
2017274 ATTTGTCTTTGTTTT-TCTTTTGGTTAAA
65 ATTTGTCTTTGTTTTGTCTTTTGGTT-AA
* *
2017302 AGT-AA--TGTTCGTTTGCTGCCAATTCTGCTAAACTTGTATTCTTTAA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTTGTATTCTTTAA
2017348 GTTTCTTTGT
Statistics
Matches: 220, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
88 12 0.05
89 28 0.13
90 34 0.15
91 3 0.01
92 18 0.08
93 43 0.20
94 82 0.37
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (92 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTTGTATTCTTTAACACTGTGAAGTTAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTAA
Found at i:2017479 original size:20 final size:19
Alignment explanation
Indices: 2017452--2017509 Score: 89
Period size: 20 Copynumber: 3.0 Consensus size: 19
2017442 TCTTTTGGTT
2017452 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
2017471 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGA
*
2017491 GAAACGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
2017510 TATAATCGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.50, C:0.19, G:0.22, T:0.09
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:2017542 original size:20 final size:20
Alignment explanation
Indices: 2017513--2017556 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
2017503 GCAACGATAT
2017513 AATCGCAACGCGAAACCAAA
1 AATCGCAACGCGAAACCAAA
*
2017533 AATCGTAACGCGAAACCAAA
1 AATCGCAACGCGAAACCAAA
2017553 AATC
1 AATC
2017557 ACAATGCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.27, G:0.14, T:0.09
Consensus pattern (20 bp):
AATCGCAACGCGAAACCAAA
Found at i:2017565 original size:20 final size:20
Alignment explanation
Indices: 2017513--2017565 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2017503 GCAACGATAT
*
2017513 AATCGCAACGCGAAACCAAA
1 AATCACAACGCGAAACCAAA
**
2017533 AATCGTAACGCGAAACCAAA
1 AATCACAACGCGAAACCAAA
*
2017553 AATCACAATGCGA
1 AATCACAACGCGA
2017566 TTTTAATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.49, C:0.26, G:0.15, T:0.09
Consensus pattern (20 bp):
AATCACAACGCGAAACCAAA
Found at i:2017615 original size:19 final size:19
Alignment explanation
Indices: 2017591--2017661 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
2017581 GCGATTCTCT
* *
2017591 CGTTGCGCTTTTTATTTCG
1 CGTTGCGATTTTCATTTCG
2017610 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
** *
2017629 CGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTCA--TTTCG
2017650 CGTTGCGATTTT
1 CGTTGCGATTTT
2017662 AAGTTCCAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 29 0.67
21 14 0.33
ACGTcount: A:0.11, C:0.20, G:0.21, T:0.48
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:2018138 original size:42 final size:42
Alignment explanation
Indices: 2018067--2018146 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
2018057 GCCTGTCATC
* * * *
2018067 CCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATTATT
1 CCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACTATTATT
* *
2018109 CCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTAT
1 CCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACTAT
2018147 CATCGTTGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.23, C:0.36, G:0.17, T:0.24
Consensus pattern (42 bp):
CCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACTATTATT
Found at i:2018179 original size:21 final size:20
Alignment explanation
Indices: 2018120--2018180 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
2018110 CTCGAGAGTC
*
2018120 CCCTCCCACCGTTCAAGAGG
1 CCCTCTCACCGTTCAAGAGG
* * *
2018140 CCACTATCATCGTTGAAGAGG
1 CC-CTCTCACCGTTCAAGAGG
*
2018161 TCCCTCTCACCATTCAAGAG
1 -CCCTCTCACCGTTCAAGAG
2018181 CCCGATTCAC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.25, C:0.36, G:0.18, T:0.21
Consensus pattern (20 bp):
CCCTCTCACCGTTCAAGAGG
Found at i:2019526 original size:14 final size:14
Alignment explanation
Indices: 2019507--2019539 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2019497 ATTGTTTAAT
2019507 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
2019521 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
2019535 TGATT
1 TGATT
2019540 GTTTAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.42
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2019693 original size:33 final size:33
Alignment explanation
Indices: 2019648--2019727 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
2019638 AAAAATGACT
* * *
2019648 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
2019681 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
2019714 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
2019728 CTAAATTCGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:2019707 original size:19 final size:19
Alignment explanation
Indices: 2019648--2019708 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
2019638 AAAAATGACT
*
2019648 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
2019667 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
2019681 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
2019700 ATCGCAACG
1 ATCGCAACG
2019709 ACAAAATCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 10 0.29
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 19 0.54
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:2019771 original size:27 final size:31
Alignment explanation
Indices: 2019733--2019805 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 31
2019723 CGAAACTAAA
2019733 TTCGCGTTGCGAT-T-TCGTT-GA-TTTCAT
1 TTCGCGTTGCGATCTCTCGTTCGATTTTCAT
2019760 TTCGCGTTGCGATTCTCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGA-TCTCTCGTT-CGATTTTCAT
*
2019793 TTCGCATTGCGAT
1 TTCGCGTTGCGAT
2019806 AGTTGCGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 12 0.31
28 1 0.03
29 1 0.03
30 5 0.13
32 3 0.08
33 17 0.44
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.45
Consensus pattern (31 bp):
TTCGCGTTGCGATCTCTCGTTCGATTTTCAT
Found at i:2019850 original size:20 final size:20
Alignment explanation
Indices: 2019825--2019895 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
2019815 TTCATTTCGC
*
2019825 GCGATAGTCATTTCCGCGTT
1 GCGATAGTCATTTCCGTGTT
* **
2019845 GCGATAGACA-TTAAGATGATT
1 GCGATAGTCATTTCCG-TG-TT
2019866 GCGA-ACGTCATTTCCGTGTT
1 GCGATA-GTCATTTCCGTGTT
2019886 GCGATAGTCA
1 GCGATAGTCA
2019896 AATGAATGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 3 0.08
20 21 0.54
21 12 0.31
22 3 0.08
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (20 bp):
GCGATAGTCATTTCCGTGTT
Found at i:2022393 original size:24 final size:24
Alignment explanation
Indices: 2022359--2022412 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
2022349 CTGAAAAATC
2022359 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
2022383 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
2022407 ATCAAA
1 ATCAAA
2022413 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:2025378 original size:20 final size:21
Alignment explanation
Indices: 2025339--2025378 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
2025329 CAAGATAAAC
*
2025339 TGAACAACATAATTTCTGCAAA
1 TGAAAAACATAA-TTCTGCAAA
2025361 TGAAAAACATAA-TCTGCA
1 TGAAAAACATAATTCTGCA
2025379 GTGAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.25
Consensus pattern (21 bp):
TGAAAAACATAATTCTGCAAA
Found at i:2027947 original size:185 final size:182
Alignment explanation
Indices: 2027638--2028003 Score: 689
Period size: 186 Copynumber: 2.0 Consensus size: 182
2027628 GGCCTCCTTT
2027638 CTAGAGGCTTACTCGCACCAATCCTGCAGAGAACCCTTGTTTTGCTCCCTTGAACAATCAGTCCC
1 CTAGAGGCTTACTCGCACCAATCCTGCAGAGAACCCTTGTTTTGCTCCCTTGAACAATCAGTCCC
2027703 TTATGACCATATAATTTAAATCTCTCCTTGAATAATGAAACCGTCCTCACTAGTAAAAGCCTGGA
66 TTATGACCATATAATTTAAATCTCTCCTTGAATAATGAAACCGTCCTCACTAGTAAAAGCCTGGA
2027768 GT-GGATTCTAGCATTTGAATGTGCTCTAGCCATCCCATGGGCTAGTGGCAC
131 GTGGGATTCTAGCATTTGAATGTGCTCTAGCCATCCCATGGGCTAGTGGCAC
2027819 CTAGAGGCTTACTCGCACCAATCTCCTGCAGAGAACCCTTGTTTTGCTCCCTTGAACAATCAAGT
1 CTAGAGGCTTACTCGCACCAA--TCCTGCAGAGAACCCTTGTTTTGCTCCCTTGAACAATC-AGT
2027884 CCCTTATGACCATATAATTTAAATCCTCTCCTTGAATAATGAAACCGTCCTCACTAGTAAAAGCC
63 CCCTTATGACCATATAATTTAAAT-CTCTCCTTGAATAATGAAACCGTCCTCACTAGTAAAAGCC
2027949 TGGAGTGGGATTCTAGCATTTGAATGTGCTCTAGCCATCCCATGGGCTAGTGGCA
127 TGGAGTGGGATTCTAGCATTTGAATGTGCTCTAGCCATCCCATGGGCTAGTGGCA
2028004 GCCCGCAAAC
Statistics
Matches: 180, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
181 21 0.12
183 38 0.21
184 27 0.15
185 46 0.26
186 48 0.27
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (182 bp):
CTAGAGGCTTACTCGCACCAATCCTGCAGAGAACCCTTGTTTTGCTCCCTTGAACAATCAGTCCC
TTATGACCATATAATTTAAATCTCTCCTTGAATAATGAAACCGTCCTCACTAGTAAAAGCCTGGA
GTGGGATTCTAGCATTTGAATGTGCTCTAGCCATCCCATGGGCTAGTGGCAC
Found at i:2029443 original size:27 final size:28
Alignment explanation
Indices: 2029399--2029459 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
2029389 CATCCGATTA
2029399 TTTTTGTGGTTTATTTTATTCACTCAAC
1 TTTTTGTGGTTTATTTTATTCACTCAAC
*
2029427 TTTTTGTGGTTTA-TTTATTCATTCAAC
1 TTTTTGTGGTTTATTTTATTCACTCAAC
2029454 TATTTT
1 T-TTTT
2029460 TTTTTAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.18, C:0.11, G:0.10, T:0.61
Consensus pattern (28 bp):
TTTTTGTGGTTTATTTTATTCACTCAAC
Found at i:2031888 original size:44 final size:45
Alignment explanation
Indices: 2031840--2031931 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 45
2031830 GAATAGTCCT
* *
2031840 TCCTTCACGATAT-TAGGGTTGTAGCAGGCTTAACGCATCAGGGG
1 TCCTTCACGATATATAGGGTTGCAGCAGGCTCAACGCATCAGGGG
* * *
2031884 TCCTTCGCGATATGATCGGGTTGCAGCAGGCTCAATGCATCAGGGG
1 TCCTTCACGATAT-ATAGGGTTGCAGCAGGCTCAACGCATCAGGGG
2031930 TC
1 TC
2031932 TTTGTGCTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 12 0.29
46 29 0.71
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (45 bp):
TCCTTCACGATATATAGGGTTGCAGCAGGCTCAACGCATCAGGGG
Found at i:2034458 original size:86 final size:87
Alignment explanation
Indices: 2034297--2034465 Score: 270
Period size: 86 Copynumber: 1.9 Consensus size: 87
2034287 AACTGCTTCA
* *
2034297 TAAATCACAACAAAATTCTAGAAAGGAACTCCAGTAAAGTAACATATAAATCCAAGTCCAATTTG
1 TAAATCACAACAAAATTCTAGAAAGGAACTACAGT-AAGAAACATATAAATCCAAGTCCAATTTG
*
2034362 AAACTCTAGCATATGGAATTTCG
65 AAACTATAGCATATGGAATTTCG
*
2034385 TAAATCACAACAAAATTCTAGAAAGGAACTATAGT-AGAAACATATAAATCCAAGTCTC-ATTTG
1 TAAATCACAACAAAATTCTAGAAAGGAACTACAGTAAGAAACATATAAATCCAAGTC-CAATTTG
2034448 AAACTATAGCATATGGAA
65 AAACTATAGCATATGGAA
2034466 GAAAAAAATG
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
86 42 0.55
87 1 0.01
88 33 0.43
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (87 bp):
TAAATCACAACAAAATTCTAGAAAGGAACTACAGTAAGAAACATATAAATCCAAGTCCAATTTGA
AACTATAGCATATGGAATTTCG
Found at i:2041659 original size:16 final size:16
Alignment explanation
Indices: 2041634--2041666 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2041624 TAATAAATAA
2041634 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
2041650 ACGAATATAAACGAAC
1 ACGAACATAAACGAAC
2041666 A
1 A
2041667 AATGTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:2041767 original size:16 final size:15
Alignment explanation
Indices: 2041726--2041775 Score: 66
Period size: 16 Copynumber: 3.3 Consensus size: 15
2041716 CGTTCATTTA
2041726 ATAAATAA-ACGAAC
1 ATAAATAACACGAAC
* *
2041740 ACAAACAACACGAAC
1 ATAAATAACACGAAC
2041755 ATAAATGAACACGAAC
1 ATAAAT-AACACGAAC
2041771 ATAAA
1 ATAAA
2041776 CATTGGAGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 6 0.20
15 10 0.33
16 14 0.47
ACGTcount: A:0.62, C:0.20, G:0.08, T:0.10
Consensus pattern (15 bp):
ATAAATAACACGAAC
Found at i:2042489 original size:38 final size:38
Alignment explanation
Indices: 2042426--2042501 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
2042416 AGATTGGCTT
2042426 AAACATAAATGAATGAACATAAACGAACATAACCGAAC
1 AAACATAAATGAATGAACATAAACGAACATAACCGAAC
* *
2042464 AAACATAAATGAACAT-AAC-TGAACGAACATAACTGAAC
1 AAACATAAATG-A-ATGAACATAAACGAACATAACCGAAC
2042502 GTTCACGAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 28 0.82
39 4 0.12
40 2 0.06
ACGTcount: A:0.57, C:0.18, G:0.11, T:0.14
Consensus pattern (38 bp):
AAACATAAATGAATGAACATAAACGAACATAACCGAAC
Found at i:2042491 original size:14 final size:14
Alignment explanation
Indices: 2042474--2042502 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
2042464 AAACATAAAT
2042474 GAACATAACTGAAC
1 GAACATAACTGAAC
2042488 GAACATAACTGAAC
1 GAACATAACTGAAC
2042502 G
1 G
2042503 TTCACGAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.21, G:0.17, T:0.14
Consensus pattern (14 bp):
GAACATAACTGAAC
Found at i:2042500 original size:24 final size:24
Alignment explanation
Indices: 2042427--2042501 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
2042417 GATTGGCTTA
* *
2042427 AACATAAATGAATGAACATAAAC-G
1 AACATAACTGAACGAACAT-AACTG
* * *
2042451 AACATAACCGAACAAACATAAATG
1 AACATAACTGAACGAACATAACTG
2042475 AACATAACTGAACGAACATAACTG
1 AACATAACTGAACGAACATAACTG
2042499 AAC
1 AAC
2042502 GTTCACGAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 2 0.05
24 40 0.95
ACGTcount: A:0.56, C:0.19, G:0.11, T:0.15
Consensus pattern (24 bp):
AACATAACTGAACGAACATAACTG
Found at i:2043273 original size:46 final size:46
Alignment explanation
Indices: 2043185--2043283 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 46
2043175 GAGCTTTTAC
* ** * *
2043185 TTGAGGAAATTGGAGTTAAGTCTAGAGATATAACTTAGTTCAATTA
1 TTGAGGAAAATGGAGTTAAGTCTAGAGATATAACAAAATTCAATAA
* * * *
2043231 TTGAGGAAAATGGAGTTAAGTTTAGGGATTTAGCAAAATTCAATAA
1 TTGAGGAAAATGGAGTTAAGTCTAGAGATATAACAAAATTCAATAA
*
2043277 CTGAGGA
1 TTGAGGA
2043284 TGGGTAGGAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.31
Consensus pattern (46 bp):
TTGAGGAAAATGGAGTTAAGTCTAGAGATATAACAAAATTCAATAA
Found at i:2046404 original size:2 final size:2
Alignment explanation
Indices: 2046397--2046442 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
2046387 GGATTAACCC
2046397 TA TA TA TA TA TA TA TA TA TA TA T- TA -A TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2046437 TA TA TA
1 TA TA TA
2046443 AATTTGTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2046541 original size:107 final size:99
Alignment explanation
Indices: 2046430--2046641 Score: 309
Period size: 100 Copynumber: 2.0 Consensus size: 99
2046420 TAATATATAT
*
2046430 ATATATATATATAAATTTGTTTTTATATCAGTTGCTTCTATTAATTGCTTATGCATCAAATTTAT
1 ATATATATATATAAATTTG--TTTATATCAGCTGCTTCTATTAA-TGC---TGCATC-AATTTAT
2046495 GCATGATTTTGCATCGAGTGTGATGGAAA-TAGAAACTCTTACA
59 GCATGA--TTGCATCGAGTGTGATGGAAACTAG-AACTCTTACA
2046538 TATATATATATATAAATTTGTTTATATCAGCTGCTTCTATTAATGCTGCATCAATTTATGCATGA
1 -ATATATATATATAAATTTGTTTATATCAGCTGCTTCTATTAATGCTGCATCAATTTATGCATGA
2046603 TTGCATCGAGTGTGATGGAAACTAGAACTCTTACA
65 TTGCATCGAGTGTGATGGAAACTAGAACTCTTACA
2046638 ATAT
1 ATAT
2046642 GATCATGAAG
Statistics
Matches: 101, Mismatches: 1, Indels: 12
0.89 0.01 0.11
Matches are distributed among these distances:
99 4 0.04
100 31 0.31
101 3 0.03
102 13 0.13
103 6 0.06
106 3 0.03
107 22 0.22
109 19 0.19
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (99 bp):
ATATATATATATAAATTTGTTTATATCAGCTGCTTCTATTAATGCTGCATCAATTTATGCATGAT
TGCATCGAGTGTGATGGAAACTAGAACTCTTACA
Found at i:2056405 original size:15 final size:15
Alignment explanation
Indices: 2056361--2056410 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
2056351 TTTTAACTAA
* *
2056361 TTAATAATTATACA-
1 TTAATATTTATAAAT
*
2056375 TTAGTATTT-TAGAAT
1 TTAATATTTATA-AAT
2056390 TTAATATTTATAAAT
1 TTAATATTTATAAAT
2056405 TTAATA
1 TTAATA
2056411 GTATTCATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 2 0.07
14 8 0.28
15 17 0.59
16 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (15 bp):
TTAATATTTATAAAT
Found at i:2057539 original size:4 final size:4
Alignment explanation
Indices: 2057532--2060879 Score: 6075
Period size: 4 Copynumber: 850.2 Consensus size: 4
2057522 GCATGCATGC
2057532 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057580 ATGT ATGT A-GT ATGT -TGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2057625 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT CTGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057672 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057719 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-T ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057766 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057814 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT -TGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057860 ATGT ATGT ATGT ATGGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT -TGT
1 ATGT ATGT ATGT AT-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057908 ATG- ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2057952 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058000 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058048 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058096 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058144 ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058191 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2058236 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT CTGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058284 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058332 A-GT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATG- ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058377 ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2058424 AGTGT ATGT ATGT ATGT ATGT -TGT ATGG ATGT ATGT ATGT ATGT ATGT
1 A-TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058472 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058520 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058568 ATGT ATGT ATGT ATGT ATGT ATTGT ATG- -TGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT A-TGT ATGT ATGT ATGT ATGT ATGT ATGT
2058615 ATGT ATGT ATGT ATGT ATGT ATGT ATTGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT A-TGT ATGT ATGT ATGT ATGT ATGT
2058664 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058710 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058758 ATGT ATGT ATGT ATGT ATGT ATGT AATGT ATGT ATGT ATGT ATGT A--T
1 ATGT ATGT ATGT ATGT ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT
*
2058805 ATGT ATGT ATGT ATGT ATGT AGGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058853 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058901 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058948 ATGTT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATG-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2058997 ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATG- ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059043 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059091 ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059138 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059186 ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059231 ATGT ATGTT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATG-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059280 ATGT ATGT ATGT ATGT -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059327 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059375 ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059421 ATGT -TGT ATGT ATGT ATGT ATGT ATGT -TGT ATG- ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059466 ATG- ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059513 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059559 ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT A-GT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059605 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2059651 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGG ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059699 ATGT ATGT ATGT ATGT ATGT ATGT ATGT -TGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2059746 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AGGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059794 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059842 ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059888 ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2059935 ATGT ATGT ATGT ATGT ATGT CTGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2059983 ATGT ATGT ATGT ATGT ATGT ATGT AT-T ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060030 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060078 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060125 ATGT ATGT ATGT ATGT ATGT -TGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060172 ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060218 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060266 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060314 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2060362 ATGT AGGT ATGT ATGT ATGT ATGT ATGT -TGT ATGT ATGT A-GT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060408 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060456 ATGT ATGT ATGT ATGT -TGT ATGT ATGT ATGT ATGT ATTGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-TGT ATGT ATGT
2060504 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2060552 ATGT ATGT ATGT ATGT ATGT ATGT ATGT CTGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060600 ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060647 ATGT ATGT ATAGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT AT-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060696 ATG- ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060743 ATGT ATGT ATGT AT-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
2060790 ATGT ATTAT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT A-TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
2060839 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
2060880 CAATTATAGT
Statistics
Matches: 3251, Mismatches: 20, Indels: 146
0.95 0.01 0.04
Matches are distributed among these distances:
2 22 0.01
3 123 0.04
4 3067 0.94
5 39 0.01
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:2064639 original size:35 final size:35
Alignment explanation
Indices: 2064593--2064667 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
2064583 AAAATACATC
*
2064593 AATTTAGGGTTTAGAATGTAATTAAGGTATTTTGG
1 AATTTAGGGTTTAGAATGTAATTAAAGTATTTTGG
* *
2064628 AATTTGGGGTTTAGAATGTAATTAAAGTGTTTTGG
1 AATTTAGGGTTTAGAATGTAATTAAAGTATTTTGG
2064663 AATTT
1 AATTT
2064668 TAAACATGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (35 bp):
AATTTAGGGTTTAGAATGTAATTAAAGTATTTTGG
Found at i:2075487 original size:31 final size:32
Alignment explanation
Indices: 2075449--2075523 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
2075439 ATTTAACAAA
2075449 AAGGGGGAG-AAAATTTAAGATGTGCTATAGT
1 AAGGGGGAGTAAAATTTAAGATGTGCTATAGT
** **
2075480 AAGGGGGAGTAAGTTTTTTGATGTGCTATAGT
1 AAGGGGGAGTAAAATTTAAGATGTGCTATAGT
*
2075512 AAGGAGGAGTAA
1 AAGGGGGAGTAA
2075524 GTTTTTCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
31 9 0.24
32 29 0.76
ACGTcount: A:0.35, C:0.03, G:0.35, T:0.28
Consensus pattern (32 bp):
AAGGGGGAGTAAAATTTAAGATGTGCTATAGT
Found at i:2075507 original size:32 final size:32
Alignment explanation
Indices: 2075467--2075529 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2075457 GAAAATTTAA
*
2075467 GATGTGCTATAGTAAGGGGGAGTAAGTTTTTT
1 GATGTGCTATAGTAAGGAGGAGTAAGTTTTTT
2075499 GATGTGCTATAGTAAGGAGGAGTAAGTTTTT
1 GATGTGCTATAGTAAGGAGGAGTAAGTTTTT
2075530 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.33, T:0.37
Consensus pattern (32 bp):
GATGTGCTATAGTAAGGAGGAGTAAGTTTTTT
Found at i:2075553 original size:12 final size:13
Alignment explanation
Indices: 2075527--2075555 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2075517 GGAGTAAGTT
2075527 TTTCAAAAATCAA
1 TTTCAAAAATCAA
2075540 TTTCAAAAAT-AA
1 TTTCAAAAATCAA
2075552 TTTC
1 TTTC
2075556 TTAAACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTCAAAAATCAA
Found at i:2078226 original size:36 final size:36
Alignment explanation
Indices: 2078179--2078253 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
2078169 AGAACAATGA
2078179 TAACTTAAATTCTTTTGTATGGAAACTCACAGTTAC
1 TAACTTAAATTCTTTTGTATGGAAACTCACAGTTAC
2078215 TAACTTAAATTCTTTTGTATGGAAACTCACAGTTAC
1 TAACTTAAATTCTTTTGTATGGAAACTCACAGTTAC
2078251 TAA
1 TAA
2078254 TCACCAACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (36 bp):
TAACTTAAATTCTTTTGTATGGAAACTCACAGTTAC
Found at i:2082934 original size:6 final size:6
Alignment explanation
Indices: 2082923--2082957 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
2082913 AGTTGTAAAT
2082923 TAAAAC TAAAAC TAAAAC TAAAAC TAAAAC TAAAA
1 TAAAAC TAAAAC TAAAAC TAAAAC TAAAAC TAAAA
2082958 TTTAATATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAC
Found at i:2084191 original size:2 final size:2
Alignment explanation
Indices: 2084178--2084208 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2084168 TCTATTTTCT
*
2084178 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2084209 TACTTTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2088770 original size:42 final size:42
Alignment explanation
Indices: 2088723--2088807 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
2088713 GACGACTTTA
*
2088723 TTCAGACAAAGTATCCAGATGAATCTATGACACTAACTTAAG
1 TTCAGACAAAGAATCCAGATGAATCTATGACACTAACTTAAG
2088765 TTCAGACAAAGAATCCAGATGAATCTATGACACTAACTTAAG
1 TTCAGACAAAGAATCCAGATGAATCTATGACACTAACTTAAG
2088807 T
1 T
2088808 CTTCTTCCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (42 bp):
TTCAGACAAAGAATCCAGATGAATCTATGACACTAACTTAAG
Found at i:2091495 original size:17 final size:18
Alignment explanation
Indices: 2091464--2091497 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2091454 TTACTTGCTA
*
2091464 TTTTTAAATATTATTTAT
1 TTTTTAAATAATATTTAT
2091482 TTTTTAAA-AATATTTA
1 TTTTTAAATAATATTTA
2091498 GAAGTCGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTAAATAATATTTAT
Found at i:2094484 original size:22 final size:22
Alignment explanation
Indices: 2094431--2094486 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
2094421 CCTCTTAATG
*
2094431 GAATCATTCAGCGTTGAATGTT
1 GAATCATTCAGCGCTGAATGTT
* * *
2094453 AAACCATTCAGTGCTGAATGTT
1 GAATCATTCAGCGCTGAATGTT
*
2094475 GAATCGTTCAGC
1 GAATCATTCAGC
2094487 ATTCAGCGCG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (22 bp):
GAATCATTCAGCGCTGAATGTT
Found at i:2094939 original size:24 final size:24
Alignment explanation
Indices: 2094912--2094963 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
2094902 AACACCAATC
*
2094912 TTGACATAGATCTGATTAAGAAAT
1 TTGACATAGATCGGATTAAGAAAT
*
2094936 TTGACATAGATCGGATTAAGAAGT
1 TTGACATAGATCGGATTAAGAAAT
2094960 TTGA
1 TTGA
2094964 ACACTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TTGACATAGATCGGATTAAGAAAT
Found at i:2105134 original size:2 final size:2
Alignment explanation
Indices: 2105122--2105158 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
2105112 TTGAAATTAC
*
2105122 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2105159 GATAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2106641 original size:26 final size:26
Alignment explanation
Indices: 2106612--2106684 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
2106602 ATATTTTTTT
2106612 AAATAGAATAAATATAAA-TATAAATA
1 AAATA-AATAAATATAAATTATAAATA
** *
2106638 AAAT-TTTAAAATATAAATTATCAATA
1 AAATAAAT-AAATATAAATTATAAATA
2106664 AAATAAAT-AAT-T-AATTATAAA
1 AAATAAATAAATATAAATTATAAA
2106685 AATTCAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
23 8 0.21
24 2 0.05
25 12 0.32
26 15 0.39
27 1 0.03
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (26 bp):
AAATAAATAAATATAAATTATAAATA
Found at i:2106683 original size:19 final size:19
Alignment explanation
Indices: 2106624--2106685 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 19
2106614 ATAGAATAAA
2106624 TATAAATATAAATAA--AAT
1 TATAAA-ATAAATAATTAAT
* *
2106642 TTTAAAATATA-AATT-AT
1 TATAAAATAAATAATTAAT
*
2106659 CAATAAAATAAATAATTAAT
1 -TATAAAATAAATAATTAAT
2106679 TATAAAA
1 TATAAAA
2106686 ATTCAAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
16 2 0.06
17 6 0.18
18 13 0.39
19 10 0.30
20 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAAAATAAATAATTAAT
Found at i:2110834 original size:3 final size:3
Alignment explanation
Indices: 2110822--2110873 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
2110812 GTCTCCCCCG
2110822 AGA A-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
2110869 AGA AG
1 AGA AG
2110874 CAAAACCCTG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:2114524 original size:27 final size:27
Alignment explanation
Indices: 2114472--2114524 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
2114462 ATGCTGGAAT
* *
2114472 CGTTGGGATTGATGGCAATGGCGGCAA
1 CGTTGGCATTGATGGCAATGGAGGCAA
*
2114499 CGTTGGCATTGGA-GGCAATTGAGGCA
1 CGTTGGCATT-GATGGCAATGGAGGCA
2114525 GTTGCTGTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.15, G:0.40, T:0.23
Consensus pattern (27 bp):
CGTTGGCATTGATGGCAATGGAGGCAA
Found at i:2116353 original size:21 final size:21
Alignment explanation
Indices: 2116329--2116385 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
2116319 CTAGAACAGG
* *
2116329 GAGTATCGGTATTGCTTTAAT
1 GAGTATCAGTATTACTTTAAT
2116350 GAGTATCAGTATTACTTTAAT
1 GAGTATCAGTATTACTTTAAT
*
2116371 GAGTATTAGTATTAC
1 GAGTATCAGTATTAC
2116386 CTTTGTAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (21 bp):
GAGTATCAGTATTACTTTAAT
Found at i:2121296 original size:13 final size:14
Alignment explanation
Indices: 2121273--2121301 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
2121263 AAATATATTT
2121273 TTTTAAAAAATAAA
1 TTTTAAAAAATAAA
2121287 TTTT-AAAAATAAA
1 TTTTAAAAAATAAA
2121300 TT
1 TT
2121302 CTGAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTTAAAAAATAAA
Found at i:2126090 original size:3 final size:3
Alignment explanation
Indices: 2126082--2126107 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2126072 ATATAGTATT
2126082 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
2126108 TGATGTAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:2137962 original size:10 final size:10
Alignment explanation
Indices: 2137947--2137979 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
2137937 GTACACAAAA
2137947 AAAAAAAACT
1 AAAAAAAACT
2137957 AAAAAAAACT
1 AAAAAAAACT
2137967 AAAAAAAACT
1 AAAAAAAACT
2137977 AAA
1 AAA
2137980 GAGAAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAAACT
Found at i:2142063 original size:2 final size:2
Alignment explanation
Indices: 2142056--2142132 Score: 154
Period size: 2 Copynumber: 38.5 Consensus size: 2
2142046 GTTCAATCAC
2142056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2142098 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2142133 CTCCTTAATG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 75 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2143501 original size:355 final size:355
Alignment explanation
Indices: 2142851--2143918 Score: 2066
Period size: 355 Copynumber: 3.0 Consensus size: 355
2142841 TGCTTCATCT
2142851 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAA-TTACTGAATTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
2142915 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
2142980 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
131 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
2143045 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
196 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
2143110 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
261 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
*
2143175 TATAAGGAATGTCATCAAGCGATTTGATTC
326 TATCAGGAATGTCATCAAGCGATTTGATTC
2143205 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
2143270 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
2143335 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
131 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
2143400 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
196 AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
2143465 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
261 TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
2143530 TATCAGGAATGTCATCAAGCGATTTGATTC
326 TATCAGGAATGTCATCAAGCGATTTGATTC
*
2143560 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGATTTTTTCTC
1 CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
2143625 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
66 TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
*
2143690 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTTGTCTCGAAATCTTACTTTCCCGAGCAAT
131 TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATC-TACTTTCCCGAGCAAT
* *
2143755 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTTCGTCGAGGCTTCTCGACTCCACTCTCTGCCG
195 CAATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCG
*
2143820 CTGCTCCAATACTTCTCCCGATAGTAATTTCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
260 CTGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACG
2143885 TTATCAGGAATGTCATCAAGCGATTTGATTC
325 TTATCAGGAATGTCATCAAGCGATTTGATTC
2143916 CTA
1 CTA
2143919 CATGAACCCT
Statistics
Matches: 706, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
354 48 0.07
355 481 0.68
356 177 0.25
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (355 bp):
CTAAACTGTCACTCTGTCATCGCTCATATTTCTCATTTTTGAGGAAAATTTACTGAATTTTTCTC
TCCTGAAAGAAACAAAGGGAAGATGAAGAATTTTTACTAGTAATAGACAGAGGGGACCGTGGTTT
TTTCAGTTTTTGCGATGGCTTCAATCCCGGCTTCTTCGTCTCGAAATCTACTTTCCCGAGCAATC
AATTTTCTTTCTTTACAAGATCGTTTTACCCTCCGTCGAGGCTTCCCGACTCCACTCTCTGCCGC
TGCTCCAATACTTCTCCCGATAGTAATTCCTTTAGCTGGCGTTGGGACTCCGCTGTTCAAGACGT
TATCAGGAATGTCATCAAGCGATTTGATTC
Found at i:2148581 original size:21 final size:21
Alignment explanation
Indices: 2148555--2148626 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
2148545 ACTATCGCAA
*
2148555 TGCGATTTTCCAATTTCACGT
1 TGCGATTTTCCAATTTCGCGT
*
2148576 TGCGATTTTCCCAA-TTCGCAT
1 TGCGATTTT-CCAATTTCGCGT
* **
2148597 TGCGATTTACGTATTT-GCGT
1 TGCGATTTTCCAATTTCGCGT
2148617 TGCGATTTTC
1 TGCGATTTTC
2148627 ATAATTCGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
20 14 0.33
21 24 0.57
22 4 0.10
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (21 bp):
TGCGATTTTCCAATTTCGCGT
Found at i:2148675 original size:21 final size:20
Alignment explanation
Indices: 2148632--2148723 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
2148622 TTTTCATAAT
2148632 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
2148652 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
2148673 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
* *
2148693 TCGCAATGCGAAT-CTTACTA
1 TCGCAATGCGAATACGTA-AA
2148713 TCGCAATGCGA
1 TCGCAATGCGA
2148724 TTTACATAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
19 2 0.03
20 43 0.68
21 18 0.29
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:2149278 original size:19 final size:19
Alignment explanation
Indices: 2149233--2149280 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
2149223 TTCGAGAATG
*
2149233 AAAATCGCAACGCGGAAAT
1 AAAATCGCAACGCGGAAAC
*
2149252 AACTATCGCAACGC-GAAACC
1 AA-AATCGCAACGCGGAAA-C
2149272 AAAATCGCA
1 AAAATCGCA
2149281 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.46, C:0.27, G:0.17, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGGAAAC
Found at i:2149318 original size:19 final size:19
Alignment explanation
Indices: 2149276--2149421 Score: 96
Period size: 19 Copynumber: 8.1 Consensus size: 19
2149266 GAAACCAAAA
*
2149276 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
2149295 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
2149314 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
2149328 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
2149347 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
2149361 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
2149380 TCAGCGTTGCGATTCTCATT
1 TC-GCGTTGCGATTTTCATT
** *
2149400 AGGTCGTTACGATTTTCATT
1 TCG-CGTTGCGATTTTCATT
2149420 TC
1 TC
2149422 AACCAAAAGA
Statistics
Matches: 97, Mismatches: 18, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
14 19 0.20
16 4 0.04
17 5 0.05
19 41 0.42
20 28 0.29
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:2149346 original size:33 final size:33
Alignment explanation
Indices: 2149298--2149396 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
2149288 TTTCATTTCG
** *
2149298 CGTTGCGATTTTCATTTCGCGTTGTGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
2149331 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
2149364 CGTTGCGATAGTCATTTCAGCGTTGCGATTCTC
1 CGTTGCGATAGTCATTTC-GCGTTGCGATTCTC
2149397 ATTAGGTCGT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
33 48 0.77
34 14 0.23
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.41
Consensus pattern (33 bp):
CGTTGCGATAGTCATTTCGCGTTGCGATTCTCT
Found at i:2149539 original size:25 final size:26
Alignment explanation
Indices: 2149485--2149539 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
2149475 TTATGTTTAT
* *
2149485 TGTTTTTGGTATATATTCACATTGTA
1 TGTTTTTGGTATATACTAACATTGTA
2149511 -GTTTTTGGTATAT-CTAAC-TTGGTA
1 TGTTTTTGGTATATACTAACATT-GTA
2149535 TGTTT
1 TGTTT
2149540 ATTGTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.24
25 17 0.68
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATACTAACATTGTA
Found at i:2151546 original size:18 final size:18
Alignment explanation
Indices: 2151523--2151564 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
2151513 AGAGTCCACT
*
2151523 CCTATCGTTGAAGAGGCC
1 CCTATCGTTGAAGAGGCA
2151541 CCTATCGTTGAAGAGGCA
1 CCTATCGTTGAAGAGGCA
2151559 CCTATC
1 CCTATC
2151565 ATTCCTCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (18 bp):
CCTATCGTTGAAGAGGCA
Found at i:2153009 original size:14 final size:14
Alignment explanation
Indices: 2152990--2153025 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
2152980 ATTGTTTAAT
2152990 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
2153004 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
2153018 TGATTTGT
1 TGATTTGT
2153026 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:2153200 original size:19 final size:19
Alignment explanation
Indices: 2153148--2153193 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
2153138 ATGTGAAATG
2153148 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
2153167 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
*
2153186 AAATTCGC
1 AAAATCGC
2153194 GTTGCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:2153211 original size:19 final size:19
Alignment explanation
Indices: 2153189--2153286 Score: 65
Period size: 19 Copynumber: 5.7 Consensus size: 19
2153179 CGAAACTAAA
2153189 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
2153208 TTCGCGTTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
2153222 TTCGCGTT-CTGATTTTTAT
1 TTCGCGTTGC-GATTTTCAT
*
2153241 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
2153256 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
2153274 TTCGCATTGCGAT
1 TTCGCGTTGCGAT
2153287 AGTAATTTCC
Statistics
Matches: 59, Mismatches: 8, Indels: 24
0.65 0.09 0.26
Matches are distributed among these distances:
13 1 0.02
14 20 0.34
16 3 0.05
17 2 0.03
19 32 0.54
20 1 0.02
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.45
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:2153228 original size:33 final size:33
Alignment explanation
Indices: 2153186--2153285 Score: 132
Period size: 33 Copynumber: 3.0 Consensus size: 33
2153176 ACGCGAAACT
*
2153186 AAATTCGCGTTGCGATTTTCATTTCGCGTTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
*
2153219 AAATTCGCGTT-CTGATTTTTATTTCGCATTGCG
1 AAATTCGCGTTGC-GATTTTCATTTCGCATTGCG
* *
2153252 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCG
2153285 A
1 A
2153286 TAGTAATTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
32 3 0.05
33 54 0.93
34 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.20, T:0.43
Consensus pattern (33 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
Found at i:2155545 original size:12 final size:12
Alignment explanation
Indices: 2155528--2155552 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2155518 TCTTCGGGGA
2155528 CTTTTTCTTCTT
1 CTTTTTCTTCTT
2155540 CTTTTTCTTCTT
1 CTTTTTCTTCTT
2155552 C
1 C
2155553 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:2156891 original size:20 final size:20
Alignment explanation
Indices: 2156866--2156933 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
2156856 CAACGGGGAA
2156866 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
* ***
2156886 ATCGCAATGCG-AAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
2156906 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
2156926 ATCACAAC
1 ATCGCAAC
2156934 TAGAAAATCG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 5 0.14
20 27 0.73
21 5 0.14
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:2156965 original size:14 final size:14
Alignment explanation
Indices: 2156946--2156999 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
2156936 GAAAATCGCA
2156946 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
2156960 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
2156977 CATTGCGATTTTCTCG
1 --TTGCGATTTTCTCG
2156993 TTGCGAT
1 TTGCGAT
2157000 AGTCAGTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
16 3 0.09
17 3 0.09
19 11 0.31
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.48
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:2157137 original size:14 final size:14
Alignment explanation
Indices: 2157118--2157154 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
2157108 CATCAATTAA
2157118 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
2157132 ACAAATCATCTTTT
1 ACAAATCAACATTT
2157146 ACAAATCAA
1 ACAAATCAA
2157155 TTAAATAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:2159078 original size:14 final size:14
Alignment explanation
Indices: 2159059--2159117 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
2159049 TTTCATTTCA
2159059 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
2159073 CGTTGCGATTTTTATTT
1 CGTTGCGA--TTT-TGT
*
2159090 CGCATTACGATTTTGT
1 CG--TTGCGATTTTGT
2159106 CGTTGCGATTTT
1 CGTTGCGATTTT
2159118 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 17 0.47
16 7 0.19
17 7 0.19
19 5 0.14
ACGTcount: A:0.12, C:0.15, G:0.22, T:0.51
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:2159084 original size:33 final size:33
Alignment explanation
Indices: 2159042--2159133 Score: 148
Period size: 33 Copynumber: 2.8 Consensus size: 33
2159032 AAAATGACTA
* *
2159042 TTGCGATTTTCATTTCACGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
* *
2159075 TTGCGATTTTTATTTCGCATTACGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
2159108 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
2159134 AGCCATTTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:2159132 original size:19 final size:18
Alignment explanation
Indices: 2159041--2159133 Score: 58
Period size: 19 Copynumber: 5.4 Consensus size: 18
2159031 GAAAATGACT
*
2159041 ATTGCGATTTTCATTTCAC
1 ATTGCGATTTT-ATTTCGC
* *
2159060 GTTGCGA-TTT-TGTCG-
1 ATTGCGATTTTATTTCGC
2159075 -TTGCGATTTTTATTTCGC
1 ATTGCGA-TTTTATTTCGC
* *
2159093 ATTACGA-TTT-TGTCG-
1 ATTGCGATTTTATTTCGC
2159108 -TTGCGATTTTCATTTCGC
1 ATTGCGATTTT-ATTTCGC
2159126 ATTGCGAT
1 ATTGCGAT
2159134 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 8, Indels: 20
0.67 0.10 0.24
Matches are distributed among these distances:
14 11 0.20
15 3 0.05
16 10 0.18
17 11 0.20
18 3 0.05
19 18 0.32
ACGTcount: A:0.15, C:0.17, G:0.19, T:0.48
Consensus pattern (18 bp):
ATTGCGATTTTATTTCGC
Found at i:2159152 original size:20 final size:19
Alignment explanation
Indices: 2159118--2159172 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
2159108 TTGCGATTTT
*
2159118 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
2159137 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
2159157 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
2159173 AAATAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:2159730 original size:18 final size:18
Alignment explanation
Indices: 2159707--2159754 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
2159697 CGGGTCGATC
*
2159707 AGATGATGGCTCTGGGTG
1 AGATGATGGCTCTGGGCG
*
2159725 AGATGATAGCTCTGGGCG
1 AGATGATGGCTCTGGGCG
*
2159743 AGGTGATGGCTC
1 AGATGATGGCTC
2159755 CCGAAGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.19, C:0.15, G:0.42, T:0.25
Consensus pattern (18 bp):
AGATGATGGCTCTGGGCG
Found at i:2161121 original size:20 final size:20
Alignment explanation
Indices: 2161073--2161131 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
2161063 AATAGTTTCT
** *
2161073 GAAAATGAAAATCGCAACAC
1 GAAAATGACTATCGCAACGC
2161093 GAAAATGACTATCGCAACGC
1 GAAAATGACTATCGCAACGC
**
2161113 GAATTTGACTATCGCAACG
1 GAAAATGACTATCGCAACG
2161132 AGAGAATCGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (20 bp):
GAAAATGACTATCGCAACGC
Found at i:2161613 original size:20 final size:20
Alignment explanation
Indices: 2161588--2161639 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
2161578 ATTATGTATT
2161588 ATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGAAAGTCAGA
*
2161608 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTCAGA
*
2161628 ATCTCGTTGCGA
1 ATCGCGTTGCGA
2161640 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTCAGA
Found at i:2161673 original size:20 final size:20
Alignment explanation
Indices: 2161567--2161681 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
2161557 CGCTTTGAAA
*
2161567 ATCGCATTGCGATTA-TGTATT
1 ATCGCATTGCGA-TAGT-TAGT
* * * *
2161588 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTTAGT
* * *
2161608 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTTAGT
* * ** *
2161628 ATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGATAGT-TAGT
2161649 ATCGCATTGCGATAGTTAGT
1 ATCGCATTGCGATAGTTAGT
2161669 ATCGCATTGCGAT
1 ATCGCATTGCGAT
2161682 TTTCCCAATT
Statistics
Matches: 75, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
20 49 0.65
21 26 0.35
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (20 bp):
ATCGCATTGCGATAGTTAGT
Found at i:2161700 original size:41 final size:41
Alignment explanation
Indices: 2161608--2161702 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 41
2161598 GAAAGTCAGA
* * * ** *
2161608 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
* *
2161649 ATCGCATTGCGATAGTTAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT-CCAAT
2161691 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
2161703 TTACTTATTC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 42 0.95
42 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:2161776 original size:21 final size:21
Alignment explanation
Indices: 2161752--2161805 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
2161742 ACTGTAGATC
2161752 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
*
2161773 ATCGCAACGCGATTTTCAATT
1 ATCGCAACGCGATTTTCAACT
2161794 ATCGCAACGCGA
1 ATCGCAACGCGA
2161806 AATGCAACGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:2163816 original size:2 final size:2
Alignment explanation
Indices: 2163804--2163844 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
2163794 ATTTTTATTT
* *
2163804 TA TA CA TA TA TA TA TA TC TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2163845 GTTTTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2163982 original size:24 final size:23
Alignment explanation
Indices: 2163943--2163991 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
2163933 ATTTATTTAT
* *
2163943 TTATTTATTTATTATTACTATTA
1 TTATTAATTTATTATTACAATTA
2163966 TTATTAATTTATATATTACAATTA
1 TTATTAATTTAT-TATTACAATTA
2163990 TT
1 TT
2163992 TTGTAGGCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATTAATTTATTATTACAATTA
Found at i:2166180 original size:19 final size:19
Alignment explanation
Indices: 2166156--2166193 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2166146 AAGTAATTTG
* *
2166156 AATTTAATTTTTAATTTTT
1 AATTTAAATTTCAATTTTT
2166175 AATTTAAATTTCAATTTTT
1 AATTTAAATTTCAATTTTT
2166194 CGCAACTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
AATTTAAATTTCAATTTTT
Found at i:2172941 original size:2 final size:2
Alignment explanation
Indices: 2172934--2173013 Score: 160
Period size: 2 Copynumber: 40.0 Consensus size: 2
2172924 TAATTGATAT
2172934 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2172976 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2173014 GAGTATCTCA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 78 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:2182578 original size:27 final size:27
Alignment explanation
Indices: 2182548--2182604 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
2182538 CAGCACGTGA
* *
2182548 TCCAACCCTACCTCATGTTCCATCGCT
1 TCCAACACTACCTCATGTTCCACCGCT
* *
2182575 TCCAGCACTTCCTCATGTTCCACCGCT
1 TCCAACACTACCTCATGTTCCACCGCT
2182602 TCC
1 TCC
2182605 TCGATTTGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.16, C:0.46, G:0.09, T:0.30
Consensus pattern (27 bp):
TCCAACACTACCTCATGTTCCACCGCT
Found at i:2191974 original size:23 final size:23
Alignment explanation
Indices: 2191943--2191989 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
2191933 TTAAAATGGG
2191943 ACAAACAAGGCAATGAACGAACA
1 ACAAACAAGGCAATGAACGAACA
* *
2191966 ACAAGCAAGGCAATGAATGAACA
1 ACAAACAAGGCAATGAACGAACA
2191989 A
1 A
2191990 AAGGGTCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.55, C:0.19, G:0.19, T:0.06
Consensus pattern (23 bp):
ACAAACAAGGCAATGAACGAACA
Found at i:2193641 original size:110 final size:108
Alignment explanation
Indices: 2193516--2193737 Score: 308
Period size: 112 Copynumber: 2.0 Consensus size: 108
2193506 TTATGACACT
*
2193516 ATGGGAATGCTCGGCGTCTTCAAGTAATT-GG-C-CT-GTGGGATATCTCGGCGTCTTCTGCATG
1 ATGGGAATGCTCGGCGTCTTCAAGCAATTGGGACTCTGGTGGGATATCTCGGCGTCTTCTGCA--
2193577 CTACAAGGAATGCCAAGGTGGATCTCTCGGCGTCTTCACCTGTCGTCTG
64 -T---AGGAATGCCAAGGTGGATCTCTCGGCGTCTTCACCTGTCGTCTG
*
2193626 ATGGGAATGCTCGGCGTCTTCAAGCAATTGGGATCTCTCGGAGTGGGATCTCTCGGCGTCTTCTG
1 ATGGGAATGCTCGGCGTCTTCAAGCAATTGGGA-CTCT--G-GTGGGATATCTCGGCGTCTTCTG
2193691 CATAGGAATGCCAAGGTGGATCTCTCGGCGTCTTCACCTGTCGTCTG
62 CATAGGAATGCCAAGGTGGATCTCTCGGCGTCTTCACCTGTCGTCTG
2193738 GCGGGAATCT
Statistics
Matches: 102, Mismatches: 2, Indels: 14
0.86 0.02 0.12
Matches are distributed among these distances:
110 28 0.27
111 2 0.02
112 44 0.43
113 1 0.01
114 2 0.02
115 1 0.01
118 24 0.24
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.29
Consensus pattern (108 bp):
ATGGGAATGCTCGGCGTCTTCAAGCAATTGGGACTCTGGTGGGATATCTCGGCGTCTTCTGCATA
GGAATGCCAAGGTGGATCTCTCGGCGTCTTCACCTGTCGTCTG
Found at i:2194022 original size:18 final size:18
Alignment explanation
Indices: 2193999--2194044 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
2193989 TTTGTGTCCT
2193999 AAGCGTGAGATTCGTCTG
1 AAGCGTGAGATTCGTCTG
2194017 AAGCGTGAGATTCGTCTG
1 AAGCGTGAGATTCGTCTG
2194035 AAGCGTGAGA
1 AAGCGTGAGA
2194045 CTAATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.26, C:0.15, G:0.35, T:0.24
Consensus pattern (18 bp):
AAGCGTGAGATTCGTCTG
Found at i:2197265 original size:172 final size:173
Alignment explanation
Indices: 2196970--2197328 Score: 569
Period size: 172 Copynumber: 2.1 Consensus size: 173
2196960 CATCAAATAT
* *
2196970 AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTTGCAATTTAATCACTAAATT
1 AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
*
2197035 TATAAATTCTTTCAAATTTAACCAATTAAGCATATTAATACTAAATTCAAGCATAGTATACCAAC
66 TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAAC
* * *
2197100 TTTTTATAATTTACTCTAATTTCTTAAATTCCTCAAATTTTGC
131 TTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
* *
2197143 AAAACGATCCCTAATTACTATTTGGTTCTCAACATTTTCAAAGTTAGCAATTTAATC-CATAAAT
1 AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCAC-TAAAT
* * *
2197207 TT-TAAATTCTTTCTAATTTAACCAATTAAGCATACTAATACTAAATTCCAGCATAGTATAGCAA
65 TTATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAA
* *
2197271 CTTTTAATAATTTACTCTTATTCCTTAAATTCCTTAAATTTTAC
130 CTTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
*
2197315 AAAACGGTCCCTAA
1 AAAACGATCCCTAA
2197329 AACTTTACAA
Statistics
Matches: 171, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
172 111 0.65
173 60 0.35
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (173 bp):
AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAAC
TTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
Found at i:2197870 original size:22 final size:22
Alignment explanation
Indices: 2197842--2197895 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
2197832 AGGACCCAGG
*
2197842 ACCCGTGATTTCTTCTTGAAGA
1 ACCCGTGATTTCTCCTTGAAGA
* * *
2197864 ACCCGTGCTCTCTCCTTGCAGA
1 ACCCGTGATTTCTCCTTGAAGA
2197886 ACCCGTGATT
1 ACCCGTGATT
2197896 CTCACGTCCA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (22 bp):
ACCCGTGATTTCTCCTTGAAGA
Found at i:2199561 original size:18 final size:17
Alignment explanation
Indices: 2199534--2199584 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
2199524 TGATACTATA
*
2199534 TATATGTTTTTATATTTT
1 TATATTTTTTTA-ATTTT
2199552 TATATTTTTTGTAATTTT
1 TATATTTTTT-TAATTTT
*
2199570 TAAATTGTTTTTAAT
1 TATATT-TTTTTAAT
2199585 AAATGTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 23 0.79
19 6 0.21
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
TATATTTTTTTAATTTT
Found at i:2200178 original size:13 final size:13
Alignment explanation
Indices: 2200160--2200212 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
2200150 AACTACAATC
2200160 CAACTACACGAAT
1 CAACTACACGAAT
2200173 CAACTACACGAAT
1 CAACTACACGAAT
*
2200186 CAACTACA--ATT
1 CAACTACACGAAT
*
2200197 CAACTATACGAAT
1 CAACTACACGAAT
2200210 CAA
1 CAA
2200213 ATGATCTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.26
13 26 0.74
ACGTcount: A:0.47, C:0.28, G:0.06, T:0.19
Consensus pattern (13 bp):
CAACTACACGAAT
Found at i:2202247 original size:22 final size:22
Alignment explanation
Indices: 2202219--2202265 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
2202209 GATTTCTGGG
* *
2202219 CAAGGGGGAATCGGTACCCATT
1 CAAGGGGGAACCGATACCCATT
*
2202241 CAA-GGGGAACCGATACCCCTT
1 CAAGGGGGAACCGATACCCATT
2202262 CAAG
1 CAAG
2202266 CGAATATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.15
Consensus pattern (22 bp):
CAAGGGGGAACCGATACCCATT
Found at i:2202876 original size:18 final size:18
Alignment explanation
Indices: 2202853--2202887 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2202843 CTAGGAGATT
2202853 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
2202871 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
2202888 CTAGAGGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:2203978 original size:22 final size:22
Alignment explanation
Indices: 2203904--2203970 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
2203894 TTATGGACAT
2203904 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
2203926 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
2203948 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
2203970 A
1 A
2203971 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:2207128 original size:22 final size:22
Alignment explanation
Indices: 2207100--2207146 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
2207090 GATTTCTGGG
* *
2207100 CAAGGGGGAATCGGTACCCATT
1 CAAGGGGGAACCGATACCCATT
*
2207122 CAA-GGGGAACCGATACCCCTT
1 CAAGGGGGAACCGATACCCATT
2207143 CAAG
1 CAAG
2207147 CGAATATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.15
Consensus pattern (22 bp):
CAAGGGGGAACCGATACCCATT
Found at i:2207754 original size:18 final size:18
Alignment explanation
Indices: 2207731--2207765 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2207721 CTAGGAGATT
2207731 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
2207749 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
2207766 CTAGAGGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Done.