genome.fa.s8088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008088.1 Hibiscus syriacus cultivar Beakdansim tig00110598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89828

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--291	92	3.2	93	94	5	505	22	12	18	46	1.83
335--462	19	7.3	19	76	16	116	45	28	17	8	1.78
390--446	14	3.8	13	74	26	51	43	29	19	7	1.77
371--462	32	2.8	32	88	8	141	45	28	18	7	1.76
479--535	14	3.7	14	77	20	60	8	21	24	45	1.80
463--554	33	2.8	33	96	1	168	9	20	22	46	1.80
458--591	19	7.6	19	77	16	128	10	19	24	45	1.81
2376--2448	38	1.9	38	97	0	137	28	1	16	53	1.51
2372--2435	19	3.4	19	64	10	51	25	1	15	57	1.47
2430--2464	13	2.6	14	90	4	54	31	0	22	45	1.53
2570--2670	20	5.6	19	79	18	126	44	17	22	14	1.86
2699--3024	19	18.4	19	80	15	405	14	20	17	47	1.82
2677--2996	52	6.0	52	94	4	550	14	21	16	46	1.83
2699--3024	71	4.6	72	82	13	389	14	20	17	47	1.82
2677--2996	161	2.0	157	93	3	552	14	21	16	46	1.83
2718--3024	33	8.8	33	80	12	280	14	20	17	47	1.82
4985--5009	12	2.1	12	100	0	50	0	28	0	72	0.86
5183--5227	24	2.0	24	86	8	67	40	22	13	24	1.90
5898--6306	20	20.5	20	85	5	486	20	18	25	35	1.95
9266--9307	18	2.3	18	95	0	75	23	16	40	19	1.91
9274--9313	18	2.2	18	95	0	71	25	20	37	17	1.94
9713--9778	2	33.0	2	93	0	105	48	3	1	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11120--11163	21	2.1	21	91	0	70	25	25	22	27	2.00
11693--11756	23	2.8	23	90	0	101	28	25	26	20	1.99
17173--17205	12	2.8	12	90	0	57	24	15	0	60	1.35
17885--17927	12	3.6	12	84	6	52	25	13	2	58	1.48
17878--17936	24	2.5	24	80	5	66	27	13	3	55	1.54
19922--20144	26	9.6	25	68	22	137	45	10	23	20	1.82
19921--20220	46	6.6	46	84	7	382	44	10	24	21	1.82
19948--20207	20	11.7	20	71	20	153	43	10	25	21	1.84
20138--20206	23	3.1	23	89	10	117	39	8	27	24	1.85
20586--20769	68	2.7	68	86	3	262	31	15	25	27	1.96
20763--20823	29	2.1	29	96	0	113	42	9	26	21	1.84
22540--22574	16	2.2	16	89	0	52	14	17	25	42	1.86
24565--24620	15	3.7	15	71	4	58	23	32	25	19	1.98
25521--25573	25	2.1	26	86	10	74	45	20	18	15	1.85
25546--25801	20	12.6	20	73	10	153	39	24	18	18	1.92
25607--25801	41	4.8	40	84	6	241	38	25	18	17	1.93
25607--25735	61	2.1	61	91	2	206	39	24	18	17	1.92
25607--25800	101	1.9	102	91	1	318	38	25	18	18	1.93
26358--26436	20	3.9	21	86	5	94	51	17	18	11	1.75
26413--26493	33	2.5	33	89	0	126	46	20	20	11	1.81
26489--26634	19	8.1	19	71	17	105	13	21	19	44	1.86
26512--26585	33	2.2	33	95	0	130	12	20	22	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26524--26605	33	2.5	33	89	2	119	13	21	21	42	1.87
26570--26625	20	2.8	20	83	0	85	16	23	19	41	1.90
28323--28702	94	4.1	93	92	2	609	21	12	18	47	1.81
28806--28873	19	3.8	19	77	18	83	50	29	14	5	1.67
28822--28848	14	1.9	14	100	0	54	48	29	14	7	1.71
28917--29003	20	4.3	20	92	2	131	21	18	20	39	1.93
29510--29590	21	3.9	21	75	0	63	23	34	19	22	1.96
30844--30927	3	28.0	3	82	0	105	40	1	0	58	1.06
30872--30949	9	8.2	9	77	13	50	46	1	0	52	1.08
31237--31299	16	3.6	17	75	10	56	65	14	19	1	1.35
31234--31303	19	3.8	19	72	14	58	65	12	20	1	1.33
43617--43688	1	72.0	1	74	0	63	87	0	12	0	0.54
43596--43688	43	2.2	43	88	7	136	84	0	15	0	0.61
43596--43687	9	10.2	9	79	9	107	84	0	15	0	0.62
43596--43687	26	3.4	26	84	4	121	84	0	15	0	0.62
43600--43688	39	2.2	41	82	15	123	85	0	14	0	0.60
44840--45715	83	10.6	83	96	1	1614	26	13	22	37	1.91
46418--46947	113	4.6	112	88	5	728	39	13	19	26	1.90
46390--46947	223	2.4	223	87	7	775	39	13	19	27	1.90
46888--46995	42	2.7	40	95	4	191	48	12	21	18	1.80
47236--47313	3	25.7	3	79	7	86	39	1	0	58	1.06
49125--49158	14	2.4	14	85	0	50	32	0	20	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49300--49344	19	2.4	19	96	0	81	15	17	17	48	1.81
49349--49441	20	4.7	20	89	2	143	18	22	24	34	1.96
50888--50950	24	2.5	26	82	12	69	49	1	17	31	1.56
51239--51475	64	3.6	63	76	13	194	33	20	17	27	1.96
51959--51990	14	2.1	16	88	11	50	40	6	12	40	1.68
52147--52210	30	2.1	30	85	0	83	18	18	28	34	1.95
55482--55694	64	3.3	63	74	13	173	34	19	16	29	1.94
56368--56431	30	2.1	30	88	0	92	20	18	26	34	1.96
58520--58573	24	2.2	24	93	0	90	40	20	18	20	1.91
58520--58587	24	2.8	24	84	0	64	38	20	17	23	1.93
59425--59525	40	2.5	40	84	9	136	26	20	17	34	1.95
59435--59539	20	5.3	20	88	2	122	25	20	19	35	1.95
59536--59581	21	2.2	21	88	0	65	36	17	28	17	1.92
59651--59865	20	10.6	20	76	7	209	19	19	24	36	1.95
59653--59865	40	5.2	41	87	2	313	19	19	23	37	1.94
59874--59926	20	2.7	20	91	5	81	13	18	24	43	1.86
59894--59987	42	2.3	42	76	9	95	21	21	22	35	1.96
59976--60029	20	2.7	19	75	8	63	16	18	31	33	1.93
62540--62570	9	3.6	9	95	4	55	25	0	35	38	1.56
63318--63435	61	1.9	61	87	0	173	27	13	28	29	1.94
65480--65530	25	2.0	25	100	0	102	19	11	0	68	1.20
67243--67285	21	2.1	20	82	4	50	60	18	11	9	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67298--67363	23	3.0	23	70	14	59	50	15	18	16	1.79
67958--68028	33	2.2	32	87	2	97	43	0	4	52	1.20
74196--74308	54	2.1	52	85	6	147	51	2	9	36	1.49
75620--75777	75	2.1	75	96	0	289	31	34	9	24	1.88
85633--85695	2	31.5	2	100	0	126	50	0	0	49	1.00
85695--85738	2	22.0	2	100	0	88	50	0	50	0	1.00
86037--86069	2	16.5	2	100	0	66	48	0	0	51	1.00
86365--86414	20	2.5	20	84	9	59	52	0	0	48	1.00

Tables:   1

The End!