Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000809.1 Hibiscus syriacus cultivar Beakdansim tig00001569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73923
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:1187 original size:64 final size:61
Alignment explanation
Indices: 1070--1274 Score: 180
Period size: 64 Copynumber: 3.2 Consensus size: 61
1060 ATAAGACCTA
* * * * *
1070 GTGCATCGGTACA-CTAATTGCATTCGATGTTTCAAAGAGCCAGGAGTGCATCGATGCATGATCT
1 GTGCATCGGTACATC-AA-AGCATTCGATGTTTCAAAAAACCAGGAGTGAATCGATGCAT--TAT
** *
1134 GTGCATCGGTACATCAAAGCATTCGATGTTTCATAAAAACTTGTAGTGAATCGATGCATTAT
1 GTGCATCGGTACATCAAAGCATTCGATGTTTCA-AAAAACCAGGAGTGAATCGATGCATTAT
* * * ** * *
1196 GTGCATCGGTACATCAAAAGTATTTGATG-TTCAATAAATTAGGTGTGTATCGATGCATTCATT
1 GTGCATCGGTACATC-AAAGCATTCGATGTTTCAAAAAACCAGGAGTGAATCGATGCATT-A-T
1259 AGTGCATCGGTACATC
1 -GTGCATCGGTACATC
1275 CCTTTGAAAA
Statistics
Matches: 119, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
61 20 0.17
62 22 0.18
63 27 0.23
64 49 0.41
65 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (61 bp):
GTGCATCGGTACATCAAAGCATTCGATGTTTCAAAAAACCAGGAGTGAATCGATGCATTAT
Found at i:7944 original size:20 final size:20
Alignment explanation
Indices: 7904--7944 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7894 TGATATAGCA
* *
7904 TACCATTGAATGATGTTTTT
1 TACCATTAAATGATGTCTTT
*
7924 TACCATTAAATGGTGTCTTT
1 TACCATTAAATGATGTCTTT
7944 T
1 T
7945 CAGTGACCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (20 bp):
TACCATTAAATGATGTCTTT
Found at i:8351 original size:147 final size:150
Alignment explanation
Indices: 8119--8388 Score: 402
Period size: 147 Copynumber: 1.8 Consensus size: 150
8109 TTTTTGACCA
8119 TATTTAATAATTGATCAAACCCTATCATAATAATTTCACCATGACTTTTCAGTGATATATAACCT
1 TATTTAATAATTGATCAAACCCTATCATAAT-ATTTCACCATGACTTTTCAGTGATATATAACCT
* *
8184 CAAAATGACTTTTCAATGATATCTGACTGAAAAACATC-TTTTCTTTTCAGTGATATACCACCTA
65 CAAAATGACTTTTCAATGATATATGAATGAAAAACATCATTTTCTTTTCAGTGATATACCACCTA
8248 ATTTCTGAACTTTTCAGTGCT
130 ATTTCTGAACTTTTCAGTGCT
* * * * * *
8269 TATTTACTAATTGATCATA-CCTATCATAAT-TTTCACCATGACTTTTCAGTGTTTTATCACTTC
1 TATTTAATAATTGATCAAACCCTATCATAATATTTCACCATGACTTTTCAGTGATATATAACCTC
* ** *
8332 AAAATGACTTTTCAGTGATATATGAATGAAAAATGTCATTTTCTTTTCAGTGTTATA
66 AAAATGACTTTTCAATGATATATGAATGAAAAACATCATTTTCTTTTCAGTGATATA
8389 TTCATGCTTA
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
147 61 0.57
148 18 0.17
149 11 0.10
150 17 0.16
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.41
Consensus pattern (150 bp):
TATTTAATAATTGATCAAACCCTATCATAATATTTCACCATGACTTTTCAGTGATATATAACCTC
AAAATGACTTTTCAATGATATATGAATGAAAAACATCATTTTCTTTTCAGTGATATACCACCTAA
TTTCTGAACTTTTCAGTGCT
Found at i:9176 original size:2 final size:2
Alignment explanation
Indices: 9169--9256 Score: 169
Period size: 2 Copynumber: 44.5 Consensus size: 2
9159 TTTAAATTTA
9169 AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9252 AT AT A
1 AT AT A
9257 CTCATAACAT
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 84 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14412 original size:27 final size:27
Alignment explanation
Indices: 14378--14443 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
14368 GATAATGGCT
14378 CTGAATCATTCAGAATGTACTTCTGTG
1 CTGAATCATTCAGAATGTACTTCTGTG
14405 CTGAATCATTCAGAATGTACTTCTGTG
1 CTGAATCATTCAGAATGTACTTCTGTG
14432 CTGAATCATTCA
1 CTGAATCATTCA
14444 ACACTGTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
CTGAATCATTCAGAATGTACTTCTGTG
Found at i:15501 original size:20 final size:19
Alignment explanation
Indices: 15467--15508 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
15457 TCTTAAGGCA
*
15467 CATTTAGTACATATAGTTG
1 CATTTAGGACATATAGTTG
15486 CATTTAGGATCATATAGTTG
1 CATTTAGGA-CATATAGTTG
15506 CAT
1 CAT
15509 GTAGTAGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (19 bp):
CATTTAGGACATATAGTTG
Found at i:16298 original size:20 final size:22
Alignment explanation
Indices: 16269--16308 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
16259 GGTTGATATT
16269 TTCATGGTA-TAT-TTGTTTTG
1 TTCATGGTATTATATTGTTTTG
*
16289 TTCATTGTATTATATTGTTT
1 TTCATGGTATTATATTGTTT
16309 AGGATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 3 0.18
22 6 0.35
ACGTcount: A:0.17, C:0.05, G:0.15, T:0.62
Consensus pattern (22 bp):
TTCATGGTATTATATTGTTTTG
Found at i:18157 original size:30 final size:30
Alignment explanation
Indices: 18121--18185 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
18111 TAGACTAACA
*
18121 TGATCTACCAGGGTCAAATATATCGTCACC
1 TGATCTACCAGAGTCAAATATATCGTCACC
18151 TGATCTACCAGAGTCAAATATATCGTCACC
1 TGATCTACCAGAGTCAAATATATCGTCACC
18181 TGATC
1 TGATC
18186 ATATCCATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (30 bp):
TGATCTACCAGAGTCAAATATATCGTCACC
Found at i:20174 original size:20 final size:20
Alignment explanation
Indices: 20145--20197 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
20135 TAGATAAAAG
*
20145 TGTCATAAAGACAGAGAACA
1 TGTCACAAAGACAGAGAACA
20165 TGTCACAAAGACAGAGAACA
1 TGTCACAAAGACAGAGAACA
20185 TGTCACAAAGACA
1 TGTCACAAAGACA
20198 TAATTATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.13
Consensus pattern (20 bp):
TGTCACAAAGACAGAGAACA
Found at i:20987 original size:16 final size:16
Alignment explanation
Indices: 20966--20999 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
20956 CGCTGCATGC
20966 TTTTCCATTTTTCTCT
1 TTTTCCATTTTTCTCT
*
20982 TTTTCCCTTTTTCTCT
1 TTTTCCATTTTTCTCT
20998 TT
1 TT
21000 GCAACCTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTCCATTTTTCTCT
Found at i:21214 original size:19 final size:19
Alignment explanation
Indices: 21190--21233 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
21180 GGTTTCCCTG
*
21190 TTTCCATGGAGATCTAGGA
1 TTTCCATAGAGATCTAGGA
*
21209 TTTCCATAGAGATCTAGGG
1 TTTCCATAGAGATCTAGGA
21228 TTTCCA
1 TTTCCA
21234 ATTGTTTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (19 bp):
TTTCCATAGAGATCTAGGA
Found at i:25808 original size:2 final size:2
Alignment explanation
Indices: 25801--25829 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25791 TCAATCTACA
25801 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25830 ATTTACGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25954 original size:85 final size:85
Alignment explanation
Indices: 25849--26011 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 85
25839 ATACAATCAC
* ** * * * *
25849 GACACACGAATGTGTATCATCTTTTTTTATGATGTGTGCTTCAATGACACGCAATGTAAGTCATA
1 GACACACAAATGTGTATCATCTTAATTTATGACGAGGGCTTCAATGACACGCAATGAAAGTCATA
* *
25914 CATGCGTGTCATATATTTAT
66 AATGCGCGTCATATATTTAT
* * * *
25934 GACACACAAATGTGTGTCATCTTAATTTATGACGAGGGCTTCAATGACGCTCAGTGAAAGTCATA
1 GACACACAAATGTGTATCATCTTAATTTATGACGAGGGCTTCAATGACACGCAATGAAAGTCATA
25999 AATGCGCGTCATA
66 AATGCGCGTCATA
26012 AAATATGTGT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 65 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (85 bp):
GACACACAAATGTGTATCATCTTAATTTATGACGAGGGCTTCAATGACACGCAATGAAAGTCATA
AATGCGCGTCATATATTTAT
Found at i:26011 original size:13 final size:13
Alignment explanation
Indices: 25993--26041 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
25983 CTCAGTGAAA
25993 GTCATAAATGCGC
1 GTCATAAATGCGC
** *
26006 GTCATAAAATATGT
1 GTCAT-AAATGCGC
26020 GTCATAAATGCGC
1 GTCATAAATGCGC
26033 GTCATAAAT
1 GTCATAAAT
26042 TTATGATGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 19 0.66
14 10 0.34
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:28473 original size:31 final size:31
Alignment explanation
Indices: 28438--28558 Score: 102
Period size: 32 Copynumber: 3.8 Consensus size: 31
28428 CAAAAGTTTC
*
28438 AAAATGAACATTAAA-TTTATCAAACTGTTAT
1 AAAATG-ACATTAAATTTTATCAAACTATTAT
* * * * *
28469 AAAATAATAATTAAATTTTATAAAATTATTAC
1 AAAATGA-CATTAAATTTTATCAAACTATTAT
* *
28501 AAAATGTCATTAAAATTTTATCAAACTATTTT
1 AAAATGACATT-AAATTTTATCAAACTATTAT
* *
28533 AAAACGACTCTTAAA-TTTATCAAACT
1 AAAATGAC-ATTAAATTTTATCAAACT
28559 TGTACACTTA
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
30 1 0.01
31 25 0.36
32 42 0.60
33 2 0.03
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (31 bp):
AAAATGACATTAAATTTTATCAAACTATTAT
Found at i:33754 original size:17 final size:17
Alignment explanation
Indices: 33715--33754 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
33705 AAATTATCAA
*
33715 TAAAAAATATAAAAAAT
1 TAAAATATATAAAAAAT
* *
33732 TAAAATATATAATAATT
1 TAAAATATATAAAAAAT
33749 TAAAAT
1 TAAAAT
33755 TTTTAGAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:35036 original size:2 final size:2
Alignment explanation
Indices: 35029--35079 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
35019 AGAAACTTGA
*
35029 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
35071 GG AG AG AG A
1 AG AG AG AG A
35080 AATAAGATCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:36849 original size:29 final size:29
Alignment explanation
Indices: 36807--36866 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
36797 GTGTTGCCGT
*
36807 AGGTCGCTATGGCATCCGGGCAAGCTTGG
1 AGGTCGCCATGGCATCCGGGCAAGCTTGG
*
36836 AGGTCGCCATGGCATCCGGGCGAGCTTGG
1 AGGTCGCCATGGCATCCGGGCAAGCTTGG
36865 AG
1 AG
36867 TCTCTGCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.25, G:0.40, T:0.18
Consensus pattern (29 bp):
AGGTCGCCATGGCATCCGGGCAAGCTTGG
Found at i:36918 original size:60 final size:60
Alignment explanation
Indices: 36853--36974 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
36843 CATGGCATCC
36853 GGGCGAGCTTGGAGTCTCTGCATGGCTATGCATGGCGGCATGGCAACGTGGCATGGGTCT
1 GGGCGAGCTTGGAGTCTCTGCATGGCTATGCATGGCGGCATGGCAACGTGGCATGGGTCT
*
36913 GGGCGAGCTTGGAGTCTCTGCATGGCTGTGCATGGCGGCATGGCAACGTGGCATGGGTCT
1 GGGCGAGCTTGGAGTCTCTGCATGGCTATGCATGGCGGCATGGCAACGTGGCATGGGTCT
36973 GG
1 GG
36975 TGGCAGCATG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.14, C:0.21, G:0.42, T:0.23
Consensus pattern (60 bp):
GGGCGAGCTTGGAGTCTCTGCATGGCTATGCATGGCGGCATGGCAACGTGGCATGGGTCT
Found at i:36994 original size:13 final size:13
Alignment explanation
Indices: 36976--37001 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36966 TGGGTCTGGT
36976 GGCAGCATGGCAA
1 GGCAGCATGGCAA
36989 GGCAGCATGGCAA
1 GGCAGCATGGCAA
37002 CGTGGGTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
GGCAGCATGGCAA
Found at i:37394 original size:8 final size:9
Alignment explanation
Indices: 37364--37401 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
37354 GGTAAGTTTT
37364 TTTTAATTA
1 TTTTAATTA
37373 TTTTAATTA
1 TTTTAATTA
*
37382 GTTT-ATTA
1 TTTTAATTA
37390 TTTTAAATTA
1 TTTT-AATTA
37400 TT
1 TT
37402 AGTTTGTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.28
9 12 0.48
10 6 0.24
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTTAATTA
Found at i:37686 original size:18 final size:18
Alignment explanation
Indices: 37663--37717 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
37653 AATAATTATT
37663 TAAATTAGTTTATTGTTA
1 TAAATTAGTTTATTGTTA
37681 TAAATTA--TTA--G-T-
1 TAAATTAGTTTATTGTTA
*
37693 T-AATTAGTTTATTATTA
1 TAAATTAGTTTATTGTTA
37710 TAAATTAG
1 TAAATTAG
37718 GGTAAAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
11 5 0.17
12 1 0.03
13 4 0.14
14 1 0.03
16 4 0.14
17 1 0.03
18 13 0.45
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (18 bp):
TAAATTAGTTTATTGTTA
Found at i:37770 original size:21 final size:21
Alignment explanation
Indices: 37745--37784 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
37735 GTTAATTGGT
37745 TTGTTAGTTTAAGTTATATTA
1 TTGTTAGTTTAAGTTATATTA
37766 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
37785 CATATAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATTA
Found at i:38054 original size:30 final size:30
Alignment explanation
Indices: 37963--38057 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 30
37953 ATTAGTTAAT
* * *
37963 TAGTTTTTTAGTAGTAAATTATAATTAAA-AA
1 TAGTTTATTAGT-TTAAGTTAT-ATTAAAGAA
*
37994 TCA-TTTATTAGTTTAATTTATATT-AAGAA
1 T-AGTTTATTAGTTTAAGTTATATTAAAGAA
38023 TAGTTTATTAG-TTAACGTTATATTAAAGAA
1 TAGTTTATTAGTTTAA-GTTATATTAAAGAA
38053 TAGTT
1 TAGTT
38058 AAAGTTATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
28 7 0.13
29 21 0.38
30 17 0.31
31 9 0.16
32 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (30 bp):
TAGTTTATTAGTTTAAGTTATATTAAAGAA
Found at i:38059 original size:22 final size:22
Alignment explanation
Indices: 38031--38079 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
38021 AATAGTTTAT
*
38031 TAGTTAACGTTATATTAAAGAA
1 TAGTTAAAGTTATATTAAAGAA
38053 TAGTTAAAGTTATATTAAAGAA
1 TAGTTAAAGTTATATTAAAGAA
38075 TAGTT
1 TAGTT
38080 TATTAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (22 bp):
TAGTTAAAGTTATATTAAAGAA
Found at i:40416 original size:14 final size:14
Alignment explanation
Indices: 40397--40444 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
40387 TTCAAGTCGT
40397 AAATCATTACTATC
1 AAATCATTACTATC
40411 AAATCATTAC--T-
1 AAATCATTACTATC
*
40422 AAATCATTAATATC
1 AAATCATTACTATC
40436 AAATCATTA
1 AAATCATTA
40445 AATATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 9 0.30
12 1 0.03
13 1 0.03
14 19 0.63
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATCATTACTATC
Found at i:40478 original size:48 final size:49
Alignment explanation
Indices: 40416--40527 Score: 181
Period size: 48 Copynumber: 2.3 Consensus size: 49
40406 CTATCAAATC
*
40416 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAAATT-ATT
1 ATTACT-AATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
* *
40465 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
40514 ATTACTAATCATTA
1 ATTACTAATCATTA
40528 CTAAATCATT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 36 0.61
49 23 0.39
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (49 bp):
ATTACTAATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
Found at i:40544 original size:60 final size:60
Alignment explanation
Indices: 40465--40590 Score: 227
Period size: 60 Copynumber: 2.1 Consensus size: 60
40455 ATAAATTATT
*
40465 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
*
40524 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
40584 ATTACTA
1 ATTACTA
40591 TCAAATCATT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
59 6 0.09
60 58 0.91
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (60 bp):
ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
Found at i:40587 original size:49 final size:49
Alignment explanation
Indices: 40524--40794 Score: 380
Period size: 49 Copynumber: 5.3 Consensus size: 49
40514 ATTACTAATC
40524 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
* *
40574 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
* * *
40623 ATTACTAATCATTACTATCAAATCATTAAAAAATAATAATAATTTCATT
1 ATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
40672 ATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
*
40721 ATTACTAATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATC
1 ATTACTAATC---A-T---T-A--A-TATCAAATCATTAAATATTAATAATAATTTCATT
40781 ATTACTAATCATTA
1 ATTACTAATCATTA
40795 CTAACTCTTA
Statistics
Matches: 203, Mismatches: 7, Indels: 20
0.88 0.03 0.09
Matches are distributed among these distances:
49 145 0.71
50 6 0.03
52 2 0.01
53 2 0.01
56 2 0.01
57 2 0.01
59 1 0.00
60 43 0.21
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (49 bp):
ATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
Found at i:40644 original size:98 final size:103
Alignment explanation
Indices: 40413--40797 Score: 548
Period size: 109 Copynumber: 3.7 Consensus size: 103
40403 TTACTATCAA
* *
40413 ATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAAATT-ATTATTACTAATCAT
1 ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCAT
40477 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
66 TACTATCAAATCATTAAAAATTAATAATAATTTC-----TACT
*
40520 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
1 -ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
40585 TTACTATCAAATCATTAAAAATTAATAATAATTTC-A-T
65 TTACTATCAAATCATTAAAAATTAATAATAATTTCTACT
* *
40622 -T-ATTACT-AATCATTACTATCAAATCATTAAAAAATAATAATAATTTCATTATTACTAATCAT
1 ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCAT
* *
40684 TAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
66 TACTATCAAATCATTAAAAATTAATAATAATTTC-----TACT
*
40727 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATCATTACTAATCA
1 -ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
40792 TTACTA
65 TTACTA
40798 ACTCTTATAA
Statistics
Matches: 255, Mismatches: 10, Indels: 23
0.89 0.03 0.08
Matches are distributed among these distances:
98 84 0.33
99 6 0.02
100 1 0.00
102 1 0.00
103 1 0.00
104 1 0.00
105 1 0.00
107 1 0.00
108 54 0.21
109 105 0.41
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (103 bp):
ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCAT
TACTATCAAATCATTAAAAATTAATAATAATTTCTACT
Found at i:40751 original size:60 final size:60
Alignment explanation
Indices: 40672--40798 Score: 229
Period size: 60 Copynumber: 2.1 Consensus size: 60
40662 TAATTTCATT
*
40672 ATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATCATTACTAATC
*
40731 ATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATCATTACTAATC
1 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATCATTACTAATC
40791 ATTACTAA
1 ATTACTAA
40799 CTCTTATAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
59 6 0.09
60 59 0.91
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (60 bp):
ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATCATTACTAATC
Found at i:40771 original size:207 final size:207
Alignment explanation
Indices: 40416--40797 Score: 676
Period size: 207 Copynumber: 1.8 Consensus size: 207
40406 CTATCAAATC
* * *
40416 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAAATTATTATTACTAATCATTACT
1 ATTACTAAATCATTAATATCAAATCATTAAAAAATAATAATAAATTATTATTACTAATCATTAAT
40481 ATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAA
66 ATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAA
*
40546 ATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAAATTAAT
131 ATCATTAAATATTAATAATAATTTCATCATTACTAATCATTACTATCAAATCATTAAAAATTAAT
40611 AATAATTTCATT
196 AATAATTTCATT
* *
40623 ATTACT-AATCATTACTATCAAATCATTAAAAAATAATAATAATTTCATTATTACTAATCATTAA
1 ATTACTAAATCATTAATATCAAATCATTAAAAAATAATAATAAATT-ATTATTACTAATCATTAA
* *
40687 TATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCA
65 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCA
40752 AATCATTAAATATTAATAATAATTTCATCATTACTAATCATTACTA
130 AATCATTAAATATTAATAATAATTTCATCATTACTAATCATTACTA
40798 ACTCTTATAA
Statistics
Matches: 166, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
206 35 0.21
207 131 0.79
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (207 bp):
ATTACTAAATCATTAATATCAAATCATTAAAAAATAATAATAAATTATTATTACTAATCATTAAT
ATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAA
ATCATTAAATATTAATAATAATTTCATCATTACTAATCATTACTATCAAATCATTAAAAATTAAT
AATAATTTCATT
Found at i:42889 original size:236 final size:236
Alignment explanation
Indices: 42476--42948 Score: 892
Period size: 236 Copynumber: 2.0 Consensus size: 236
42466 CGAAGTACAA
*
42476 TAGTCGGTGGTCTTGTTCGATGAAGTTTCACAAACATGTGTGCGGACCATTGTACCTCGTGATGA
1 TAGTCGGTGGTCTTGTTCGATGAAGTTTCACAAACATATGTGCGGACCATTGTACCTCGTGATGA
* * *
42541 CCCAAACATCGTGCCTTTGATTTTTTGACACTCTGATCTTCCACTTGCACTCTAGGCCATATTTT
66 CCCAAACACCGTGCCTTTGATTTTTCGACACGCTGATCTTCCACTTGCACTCTAGGCCATATTTT
42606 ACACACTTCGCGTATAGGGTTTTCTGGTTTGACTCTGCAACATGGATATCAACATGGCATTTTAT
131 ACACACTTCGCGTATAGGGTTTTCTGGTTTGACTCTGCAACATGGATATCAACATGGCATTTTAT
42671 ACAGTACTCTTTAATCGCCAGGGTAGCTTCATTTTTTCCTC
196 ACAGTACTCTTTAATCGCCAGGGTAGCTTCATTTTTTCCTC
* *
42712 TAGTCGGTGGTCTTGTTCGATGAAGTTTCGCAAACATATGTGTGGACCATTGTACCTCGTGATGA
1 TAGTCGGTGGTCTTGTTCGATGAAGTTTCACAAACATATGTGCGGACCATTGTACCTCGTGATGA
42777 CCCAAACACCGTGCCTTTGATTTTTCGACACGCTGATCTTCCACTTGCACTCTAGGCCATATTTT
66 CCCAAACACCGTGCCTTTGATTTTTCGACACGCTGATCTTCCACTTGCACTCTAGGCCATATTTT
42842 ACACACTTCGCGTATAGGGTTTTCTGGTTTGACTCTGCAACATGGATATCAACATGGCATTTTAT
131 ACACACTTCGCGTATAGGGTTTTCTGGTTTGACTCTGCAACATGGATATCAACATGGCATTTTAT
42907 ACAGTACTCTTTAATCGCCAGGGTAGCTTCATTTTTTCCTC
196 ACAGTACTCTTTAATCGCCAGGGTAGCTTCATTTTTTCCTC
42948 T
1 T
42949 GAATTGCACC
Statistics
Matches: 231, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
236 231 1.00
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (236 bp):
TAGTCGGTGGTCTTGTTCGATGAAGTTTCACAAACATATGTGCGGACCATTGTACCTCGTGATGA
CCCAAACACCGTGCCTTTGATTTTTCGACACGCTGATCTTCCACTTGCACTCTAGGCCATATTTT
ACACACTTCGCGTATAGGGTTTTCTGGTTTGACTCTGCAACATGGATATCAACATGGCATTTTAT
ACAGTACTCTTTAATCGCCAGGGTAGCTTCATTTTTTCCTC
Found at i:44131 original size:28 final size:28
Alignment explanation
Indices: 44100--44153 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
44090 ATAATCTAAT
*
44100 ATATAACTTAAACTAACAAATTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
44128 ATATAACTTAAACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
44154 ATTTATACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:44160 original size:28 final size:28
Alignment explanation
Indices: 44096--44160 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
44086 TTATATAATC
*
44096 TAATATATAACTTAAACTAACAAATTAA
1 TAATATATAACTTAAACTAACAAACTAA
44124 T-ATAATATAACTTAAACTAACAAACTAA
1 TAAT-ATATAACTTAAACTAACAAACTAA
*
44152 TAATTTATA
1 TAATATATA
44161 CTAACAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 29 0.88
29 2 0.06
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (28 bp):
TAATATATAACTTAAACTAACAAACTAA
Found at i:44163 original size:21 final size:21
Alignment explanation
Indices: 44130--44178 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
44120 TTAATATAAT
44130 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
44151 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
44172 ATTAACT
1 A-TAACT
44179 AAATTTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:44606 original size:13 final size:13
Alignment explanation
Indices: 44588--44622 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
44578 GCATGAGGGA
*
44588 GAAGCTATGGCTC
1 GAAGCTATGGCAC
*
44601 GAAGCTAGGGCAC
1 GAAGCTATGGCAC
44614 GAAGCTATG
1 GAAGCTATG
44623 ACACTTTGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.34, T:0.17
Consensus pattern (13 bp):
GAAGCTATGGCAC
Found at i:44904 original size:29 final size:29
Alignment explanation
Indices: 44862--44935 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
44852 GACGCCGGGT
* * *
44862 GTGCATGGAGACCTATAAGGTCG-CTGGGC
1 GTGCATGGCGACCTACAAGATCGCCT-GGC
* *
44891 GTGCATGGCGACCTACCATATCGCCTGGC
1 GTGCATGGCGACCTACAAGATCGCCTGGC
44920 GTGCATGGCGACCTAC
1 GTGCATGGCGACCTAC
44936 CATGTCGCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 37 0.95
30 2 0.05
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (29 bp):
GTGCATGGCGACCTACAAGATCGCCTGGC
Found at i:44936 original size:29 final size:28
Alignment explanation
Indices: 44882--44964 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 28
44872 ACCTATAAGG
44882 TCGCTGGGCGTGCATGGCGACCTACCATA
1 TCGCT-GGCGTGCATGGCGACCTACCATA
*
44911 TCGCCTGGCGTGCATGGCGACCTACCATG
1 TCG-CTGGCGTGCATGGCGACCTACCATA
*
44940 TCGCTGG-GATGCCCTGGCGACCTAC
1 TCGCTGGCG-TG-CATGGCGACCTAC
44965 GCCAACACTG
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
27 1 0.02
28 6 0.12
29 40 0.82
30 2 0.04
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.20
Consensus pattern (28 bp):
TCGCTGGCGTGCATGGCGACCTACCATA
Found at i:45593 original size:22 final size:22
Alignment explanation
Indices: 45565--45608 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45555 TGATTATAGT
*
45565 TTTTTGAAATT-TTATTTTAAAA
1 TTTTTG-AATTATTATTTAAAAA
45587 TTTTTGAATTATTATTTAAAAA
1 TTTTTGAATTATTATTTAAAAA
45609 AACATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TTTTTGAATTATTATTTAAAAA
Found at i:45767 original size:3 final size:3
Alignment explanation
Indices: 45761--45811 Score: 68
Period size: 3 Copynumber: 16.7 Consensus size: 3
45751 TCGGGTTTTA
*
45761 ATT ATT ATT ATT ATT ATT ATC A-T ATTT ATT ATT ATT ACTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT A-TT ATT ATT
45807 ATT AT
1 ATT AT
45812 AAATAAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 37 0.86
4 5 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:50566 original size:19 final size:20
Alignment explanation
Indices: 50533--50571 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50523 GGGGAGTAAT
50533 TTTCAAAATTGA-TTTCAAA
1 TTTCAAAATTGATTTTCAAA
50552 TTTCAAAAATT-ATTTTCAAA
1 TTTC-AAAATTGATTTTCAAA
50572 GAAAATCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (20 bp):
TTTCAAAATTGATTTTCAAA
Found at i:51060 original size:21 final size:21
Alignment explanation
Indices: 51034--51073 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
51024 TGAATTTTAC
51034 AGAGTGTACCGATACACCTTG
1 AGAGTGTACCGATACACCTTG
51055 AGAGTGTACCGATACACCT
1 AGAGTGTACCGATACACCT
51074 ACGCTCCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
AGAGTGTACCGATACACCTTG
Found at i:63762 original size:16 final size:16
Alignment explanation
Indices: 63741--63787 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
63731 GATTATGGCT
*
63741 ATTTTGATCTTTTTTC
1 ATTTTGATCTTTGTTC
63757 ATTTTGATCTTTGTTC
1 ATTTTGATCTTTGTTC
*
63773 ATTTTGATCATTGTT
1 ATTTTGATCTTTGTT
63788 TGAGTATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.15, C:0.11, G:0.11, T:0.64
Consensus pattern (16 bp):
ATTTTGATCTTTGTTC
Found at i:63942 original size:20 final size:21
Alignment explanation
Indices: 63911--63949 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
63901 TAATTGACGG
*
63911 TGATATTTTTATTTTATTTTA
1 TGATATTTTTATTCTATTTTA
63932 TGATA-TTTTATTCTATTT
1 TGATATTTTTATTCTATTT
63950 AAATTTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (21 bp):
TGATATTTTTATTCTATTTTA
Found at i:65602 original size:18 final size:19
Alignment explanation
Indices: 65564--65602 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
65554 AAAGCGATCA
65564 TTGCAATGGAAAAAAGTTT
1 TTGCAATGGAAAAAAGTTT
65583 TTGCAATGGAAAAAAGTTT
1 TTGCAATGGAAAAAAGTTT
65602 T
1 T
65603 CATAACAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (19 bp):
TTGCAATGGAAAAAAGTTT
Found at i:71992 original size:14 final size:14
Alignment explanation
Indices: 71969--71998 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71959 TATTTACATT
*
71969 TTCATTCTTTATTC
1 TTCATCCTTTATTC
71983 TTCATCCTTTATTC
1 TTCATCCTTTATTC
71997 TT
1 TT
71999 TACATTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.00, T:0.63
Consensus pattern (14 bp):
TTCATCCTTTATTC
Done.