Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008090.1 Hibiscus syriacus cultivar Beakdansim tig00110600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 750292
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:16947 original size:21 final size:21
Alignment explanation
Indices: 16923--16976 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
16913 TATCGCAAAT
16923 TCGCGTTGCGATAGTTGGAAA
1 TCGCGTTGCGATAGTTGGAAA
16944 TCGCGTTGCGATAGTTGGAAA
1 TCGCGTTGCGATAGTTGGAAA
16965 TCGCGTTGCGAT
1 TCGCGTTGCGAT
16977 GGTATACAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGGAAA
Found at i:17117 original size:20 final size:20
Alignment explanation
Indices: 17071--17121 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
17061 ATACAAAATT
* *
17071 GCAACGAGATACTGACTTTC
1 GCAACGCGATTCTGACTTTC
17091 GCAACGCGATTCTGACTTTC
1 GCAACGCGATTCTGACTTTC
17111 GCAACGCGATT
1 GCAACGCGATT
17122 TACATAGCGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (20 bp):
GCAACGCGATTCTGACTTTC
Found at i:17723 original size:20 final size:19
Alignment explanation
Indices: 17680--17842 Score: 132
Period size: 20 Copynumber: 8.9 Consensus size: 19
17670 AAATAAAAAA
17680 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
17699 CGTTGCGATTTTTATTTCG
1 CGTTGCGATTTTCATTTCG
17718 CGGTTGCGATTTTCATTTCG
1 C-GTTGCGATTTTCATTTCG
*
17738 CGTTGCGATTGTC---T-G
1 CGTTGCGATTTTCATTTCG
* **
17753 -GTCGCGATAGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
17771 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
*
17785 CGTTGCGATAGTT-ATTTCCG
1 CGTTGCGAT-TTTCATTT-CG
* *
17805 CGTTGCGATTCTCATTATCT
1 CGTTGCGATTTTCATT-TCG
17825 CGTTGCGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
17843 AACCAAAAGA
Statistics
Matches: 116, Mismatches: 13, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
14 20 0.17
15 1 0.01
16 1 0.01
17 5 0.04
18 1 0.01
19 40 0.34
20 47 0.41
21 1 0.01
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:17758 original size:39 final size:39
Alignment explanation
Indices: 17681--17758 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
17671 AATAAAAAAC
* **
17681 GTTGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCG
1 GTTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCG
17720 GTTGCGATTTTCATTTCGCGTTGCGATTGTCT-GGTCGCG
1 GTTGCGATTTTCATTTCGCGTTGCGATT-TCTAGGTCGCG
17759 ATAGTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.09, C:0.19, G:0.27, T:0.45
Consensus pattern (39 bp):
GTTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCG
Found at i:17812 original size:34 final size:33
Alignment explanation
Indices: 17730--17817 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
17720 GTTGCGATTT
* *
17730 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
17763 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
17796 TTATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
17818 ATTATCTCGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 35 0.70
34 15 0.30
ACGTcount: A:0.11, C:0.24, G:0.25, T:0.40
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:19920 original size:21 final size:21
Alignment explanation
Indices: 19896--19962 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
19886 TCATTCCTCG
19896 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
19917 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
19938 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
19959 AGAG
1 AGAG
19963 CTCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:19920 original size:42 final size:42
Alignment explanation
Indices: 19840--19962 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
19830 GCCCGACTCA
* * * * * *
19840 CCTATCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
*
19882 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
* * * *
19924 ACTGTCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 CCTATCATTCCTCG-AGA-GTCCCCTCCCACCATTCAAGAG
19963 CTCGATTCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 61 0.91
43 2 0.03
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTATCATTCCTCGAGAGTCCCCTCCCACCATTCAAGAGGCC
Found at i:21337 original size:14 final size:14
Alignment explanation
Indices: 21317--21353 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
21307 GATTGTTTAA
21317 TTGATTTGTAAAA-
1 TTGATTTGTAAAAG
21330 TGTGATTTGTAAAAG
1 T-TGATTTGTAAAAG
21345 TTGATTTGT
1 TTGATTTGT
21354 TTAATTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 20 0.91
15 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:21522 original size:19 final size:19
Alignment explanation
Indices: 21460--21513 Score: 90
Period size: 20 Copynumber: 2.8 Consensus size: 19
21450 AAAAAGTACT
*
21460 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
21479 ATCGCAACGCGAAAATGAAA
1 ATCGCAACGCG-AAATGAAA
21499 ATCGCAACGCGAAAT
1 ATCGCAACGCGAAAT
21514 TAAATTCGCG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 14 0.42
20 19 0.58
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.13
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:21529 original size:19 final size:19
Alignment explanation
Indices: 21461--21553 Score: 51
Period size: 19 Copynumber: 4.8 Consensus size: 19
21451 AAAAGTACTA
* * *
21461 TCGCAATGCGAAATGAAAA
1 TCGCATTGCGAAATTAAAT
** * *
21480 TCGCAACGCGAAAATGAAAA
1 TCGCATTGCG-AAATTAAAT
**
21500 TCGCAACGCGAAATTAAAT
1 TCGCATTGCGAAATTAAAT
* ** * *
21519 TCGCGTTGCGATTTTCATT
1 TCGCATTGCGAAATTAAAT
21538 TCGCATTGCGAAATTA
1 TCGCATTGCGAAATTA
21554 GCGTTGCGAT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
19 40 0.68
20 19 0.32
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (19 bp):
TCGCATTGCGAAATTAAAT
Found at i:21558 original size:33 final size:33
Alignment explanation
Indices: 21515--21613 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
21505 ACGCGAAATT
21515 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
*
21548 AAATTAGCGTTGCGATTTTCATTTCGCATTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
* *
21581 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCG
21614 TTAGTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
32 2 0.03
33 59 0.97
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.41
Consensus pattern (33 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
Found at i:21581 original size:19 final size:19
Alignment explanation
Indices: 21518--21613 Score: 77
Period size: 19 Copynumber: 5.6 Consensus size: 19
21508 CGAAATTAAA
*
21518 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
21537 TTCGCATTGCGA-----AA
1 TTCGCATTGCGATTTTCAT
* *
21551 TTAGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
21570 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
21586 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
21603 TTCGCATTGCG
1 TTCGCATTGCG
21614 TTAGTAATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
14 17 0.29
16 7 0.12
17 7 0.12
19 27 0.47
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:25225 original size:20 final size:20
Alignment explanation
Indices: 25200--25297 Score: 187
Period size: 20 Copynumber: 4.9 Consensus size: 20
25190 ATTCATTTGA
25200 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
25220 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
25240 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
25260 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
25280 CTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
25298 CACAATGCGA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 77 1.00
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:25467 original size:14 final size:14
Alignment explanation
Indices: 25448--25484 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
25438 CATCAATTAA
25448 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
25462 ACAAATCATCTTTT
1 ACAAATCAACATTT
25476 ACAAATCAA
1 ACAAATCAA
25485 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:27373 original size:19 final size:19
Alignment explanation
Indices: 27349--27415 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
27339 GAAACTTAAA
27349 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
* *
27368 ATCGCAACGTGGAAATGGCT
1 ATCGCAACG-CGAAATGACT
* **
27388 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
27407 ATCGCAACG
1 ATCGCAACG
27416 ACAAAATCGA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 23 0.59
20 16 0.41
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:27463 original size:14 final size:14
Alignment explanation
Indices: 27444--27501 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
27434 TTTCATTTCG
27444 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
27458 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
27474 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
27490 CGTTGCGATTTT
1 CGTTGCGATTTT
27502 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:27474 original size:32 final size:33
Alignment explanation
Indices: 27427--27517 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
27417 CAAAATCGAA
*
27427 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
27460 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
27492 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
27518 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:27536 original size:20 final size:19
Alignment explanation
Indices: 27502--27556 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
27492 TTGCGATTTT
*
27502 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
27521 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
27541 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
27557 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:28064 original size:18 final size:18
Alignment explanation
Indices: 28038--28082 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
28028 GTCGATCAGA
*
28038 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
28056 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
28074 TGATGGCTC
1 TGATGGCTC
28083 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:29427 original size:20 final size:20
Alignment explanation
Indices: 29402--29444 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
29392 AATAGTTTCT
29402 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
*
29422 GAAAATGAAAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
29442 GAA
1 GAA
29445 TTCGACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:29751 original size:22 final size:22
Alignment explanation
Indices: 29724--29767 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
29714 GATGGAGATA
29724 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
29746 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
29768 TGAGAGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:29981 original size:20 final size:20
Alignment explanation
Indices: 29955--30027 Score: 119
Period size: 20 Copynumber: 3.6 Consensus size: 20
29945 GATTATGTAT
29955 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
29975 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
29995 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
*
30015 TATCTCGTTGCGA
1 TATCGCGTTGCGA
30028 TTTTTTATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:30062 original size:21 final size:21
Alignment explanation
Indices: 30038--30113 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
30028 TTTTTTATTA
30038 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
30059 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
30079 TCGCATTGTGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
30100 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
30114 ACTTATTCAC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:30083 original size:41 final size:41
Alignment explanation
Indices: 30020--30130 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
30010 GTAAGTATCT
*
30020 CGTTGCGATTT-TTTATTATCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTA-T-TCGCATTGCGATTTTCCCAATTCG
*
30062 CGTTGCGATTTACTTATTCGCATTGTGATTTTCCCAATTCG
1 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
*
30103 CGTTGCGATTTACTTATTCACATTGCGA
1 CGTTGCGATTTACTTATTCGCATTGCGA
30131 ATTGGGAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
41 49 0.77
42 12 0.19
43 3 0.05
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (41 bp):
CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
Found at i:30128 original size:20 final size:20
Alignment explanation
Indices: 30038--30130 Score: 78
Period size: 20 Copynumber: 4.5 Consensus size: 20
30028 TTTTTTATTA
* **
30038 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
30059 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* * **
30079 TCGCATTGTGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
30100 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
*
30120 TCACATTGCGA
1 TCGCATTGCGA
30131 ATTGGGAAAA
Statistics
Matches: 55, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 30 0.55
21 25 0.45
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:33478 original size:31 final size:31
Alignment explanation
Indices: 33439--33503 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
33429 AATGGATTTT
*
33439 AAATATTATGAAA-TAGTCATTA-AATTTCTC
1 AAATATTAT-AAATTAGTCATTATAATTTATC
*
33469 AAATGATTATAAATTGGTCATTATAATTTATC
1 AAAT-ATTATAAATTAGTCATTATAATTTATC
33501 AAA
1 AAA
33504 CCGTTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 7 0.23
31 13 0.43
32 10 0.33
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (31 bp):
AAATATTATAAATTAGTCATTATAATTTATC
Found at i:33511 original size:32 final size:31
Alignment explanation
Indices: 33454--33513 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
33444 TTATGAAATA
* *
33454 GTCATTAAATTTCTCAAATGATTATAAATTG
1 GTCATTAAATTTATCAAACGATTATAAATTG
33485 GTCATTATAATTTATCAAACCG-TTATAAA
1 GTCATTA-AATTTATCAAA-CGATTATAAA
33514 ATACTCACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.28
32 17 0.68
33 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (31 bp):
GTCATTAAATTTATCAAACGATTATAAATTG
Found at i:43929 original size:42 final size:42
Alignment explanation
Indices: 43868--43984 Score: 207
Period size: 42 Copynumber: 2.8 Consensus size: 42
43858 CCCCGAAATT
*
43868 CCGTGTTTGTTTCATGTAATTCGTTTTCCGGAAAATGTTTTC
1 CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTC
*
43910 CCGTGTGTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTC
1 CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTC
*
43952 TCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
43985 CGTAATTCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (42 bp):
CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTC
Found at i:44199 original size:21 final size:22
Alignment explanation
Indices: 44173--44215 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
44163 TAATCATTAA
*
44173 AATATTTAAAAT-ATATTTATT
1 AATATTTAAAATAATATATATT
*
44194 AATATTTATAATAATATATATT
1 AATATTTAAAATAATATATATT
44216 TTTAGTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTAAAATAATATATATT
Found at i:44264 original size:49 final size:52
Alignment explanation
Indices: 44187--44324 Score: 139
Period size: 49 Copynumber: 2.8 Consensus size: 52
44177 TTTAAAATAT
*
44187 ATTTATTA-ATATTTATAAT-A-ATA-TATATTTTTAGTTCAATAATAT-CA
1 ATTTATTATATATTAATAATAAGATATTATATTTTTAGTTCAATAATATACA
* * *
44234 ATTATATTATA-A-TAAT-ATAAGATATTATATTTTTATTTTAATAATATATA
1 ATT-TATTATATATTAATAATAAGATATTATATTTTTAGTTCAATAATATACA
* *
44284 ATTTTTTATATATTTAATAATAATATATTATATATTTTAGT
1 ATTTATTATATA-TTAATAATAAGATATTATAT-TTTTAGT
44325 AAAGATATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
46 2 0.03
47 7 0.10
48 9 0.12
49 27 0.37
50 5 0.07
52 4 0.05
53 13 0.18
54 6 0.08
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (52 bp):
ATTTATTATATATTAATAATAAGATATTATATTTTTAGTTCAATAATATACA
Found at i:44306 original size:22 final size:23
Alignment explanation
Indices: 44275--44320 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
44265 TTTATTTTAA
* *
44275 TAATATATAATTTTTTATATATT
1 TAATATATAATATATTATATATT
44298 TAATA-ATAATATATTATATATT
1 TAATATATAATATATTATATATT
44320 T
1 T
44321 TAGTAAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TAATATATAATATATTATATATT
Found at i:44487 original size:18 final size:20
Alignment explanation
Indices: 44460--44497 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
44450 TAATAAAATT
44460 ATAAAAAAA-TA-TTTAATA
1 ATAAAAAAATTATTTTAATA
*
44478 ATAAATAAATTATTTTAATA
1 ATAAAAAAATTATTTTAATA
44498 TTTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 2 0.12
20 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAAAAAAATTATTTTAATA
Found at i:44679 original size:20 final size:20
Alignment explanation
Indices: 44642--44680 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44632 TTTCCAGATG
**
44642 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATCAAATTCA
*
44662 TTTTCCAGAATTCAAATTC
1 TTTTCCAGAAATCAAATTC
44681 CAGTAATTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (20 bp):
TTTTCCAGAAATCAAATTCA
Found at i:44691 original size:29 final size:30
Alignment explanation
Indices: 44654--44726 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
44644 TTCCAGAAAT
44654 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
*
44683 GTAATTCATTTTTCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
44713 GTAATTCATTTTCC
1 GTAATTCATTTTCC
44727 GGAAAACCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 15 0.37
30 26 0.63
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:44726 original size:15 final size:15
Alignment explanation
Indices: 44654--44726 Score: 94
Period size: 15 Copynumber: 4.9 Consensus size: 15
44644 TTCCAGAAAT
44654 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
44669 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
*
44683 GTAATTCATTTTTCA
1 GTAATTCATTTTCCA
**
44698 GTAATTCAAATTCCA
1 GTAATTCATTTTCCA
44713 GTAATTCATTTTCC
1 GTAATTCATTTTCC
44727 GGAAAACCAA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
14 12 0.26
15 35 0.74
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:44821 original size:25 final size:25
Alignment explanation
Indices: 44786--44846 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
44776 GACAATTTTG
*
44786 TCATTTTACATTACTGAAATCAAAT
1 TCATTTGACATTACTGAAATCAAAT
44811 TCATTTGACATTACTGAAATCAAAT
1 TCATTTGACATTACTGAAATCAAAT
44836 TCATTTGACAT
1 TCATTTGACAT
44847 GTCTGCGAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (25 bp):
TCATTTGACATTACTGAAATCAAAT
Found at i:44962 original size:17 final size:18
Alignment explanation
Indices: 44927--44962 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44917 TTGGATTTAA
*
44927 TTCTTGACAGATTCTAAT
1 TTCTTCACAGATTCTAAT
44945 TTCTTCACAGATTC-AAT
1 TTCTTCACAGATTCTAAT
44962 T
1 T
44963 CCTCAGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.44
Consensus pattern (18 bp):
TTCTTCACAGATTCTAAT
Found at i:45754 original size:32 final size:31
Alignment explanation
Indices: 45680--45768 Score: 117
Period size: 32 Copynumber: 2.9 Consensus size: 31
45670 TCATACGTAA
*
45680 TGTTTACTTTTTGTTTCA-TTTAGTACTCAG
1 TGTTTACTTTTTGTTTCATTTTAGTACCCAG
* * *
45710 CGTTTACTTTTTGCTTCATTTTAGTACCCTAT
1 TGTTTACTTTTTGTTTCATTTTAGTACCC-AG
*
45742 TGTTAACTTTTTGTTTCATTTTAGTAC
1 TGTTTACTTTTTGTTTCATTTTAGTAC
45769 AAAAATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
30 16 0.32
31 9 0.18
32 25 0.50
ACGTcount: A:0.17, C:0.16, G:0.11, T:0.56
Consensus pattern (31 bp):
TGTTTACTTTTTGTTTCATTTTAGTACCCAG
Found at i:51002 original size:75 final size:75
Alignment explanation
Indices: 50875--51107 Score: 315
Period size: 75 Copynumber: 3.1 Consensus size: 75
50865 CTTCTATTAA
* * *
50875 CTCAACTGCATACTCGAATCGATCCAGATTATGTAGGAACAAGGTTCCAGTCTACCGGTCTAATT
1 CTCAACTGCATACTCGAATTGATCCGGATTATGTAGGAACAAGGTTCGAGTCTACCGGTCTAATT
50940 TAGTATTTGC
66 TAGTATTTGC
* * * * *
50950 CTCGACTGCATATTCGGATTGATCCGGATTATGTAGAAACAAGGTTCGAGTCTACCGGTCTATTT
1 CTCAACTGCATACTCGAATTGATCCGGATTATGTAGGAACAAGGTTCGAGTCTACCGGTCTAATT
*
51015 TAATATTTGC
66 TAGTATTTGC
* * * * * *
51025 CTCAACTACATAGTCGAATTGATCTGGATTATGTAGGAACAAGGTTTGAGTCTACAGGTAT-ATT
1 CTCAACTGCATACTCGAATTGATCCGGATTATGTAGGAACAAGGTTCGAGTCTACCGGTCTAATT
51089 TAGTATTTGC
66 TAGTATTTGC
*
51099 CTCAGCTGC
1 CTCAACTGC
51108 TGCACCTTCG
Statistics
Matches: 136, Mismatches: 22, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
74 18 0.13
75 118 0.87
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (75 bp):
CTCAACTGCATACTCGAATTGATCCGGATTATGTAGGAACAAGGTTCGAGTCTACCGGTCTAATT
TAGTATTTGC
Found at i:53471 original size:41 final size:41
Alignment explanation
Indices: 53414--53493 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
53404 ATAAAATATC
* * * *
53414 GACGGTATGGATATGAACTATGTAACCTATACTCGAAAGTG
1 GACGGCATGGAGATGAACTATGTAACCTAGACTCAAAAGTG
53455 GACGGCATGGAGATGAACTATGTAACCTAGACTCAAAAG
1 GACGGCATGGAGATGAACTATGTAACCTAGACTCAAAAG
53494 CGGTTAATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (41 bp):
GACGGCATGGAGATGAACTATGTAACCTAGACTCAAAAGTG
Found at i:59044 original size:32 final size:32
Alignment explanation
Indices: 59007--59075 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
58997 GATCACTAAA
* *
59007 TTTATCAAAATGTTACAGAATAATCGTAAAGT
1 TTTATCAAAATGTTACAAAATAATCATAAAGT
* * * *
59039 TTTATCGAATTGTTTCAAAATAATCATCAAGT
1 TTTATCAAAATGTTACAAAATAATCATAAAGT
59071 TTTAT
1 TTTAT
59076 TTAACTATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (32 bp):
TTTATCAAAATGTTACAAAATAATCATAAAGT
Found at i:62887 original size:23 final size:23
Alignment explanation
Indices: 62848--62892 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
62838 TGAGTTTATT
*
62848 TTATATATTTTAATTTATAATTA
1 TTATATATTTTAATTTAAAATTA
*
62871 TTATAT-TTTTATTTTTAAAATT
1 TTATATATTTTA-ATTTAAAATT
62893 TTGATACCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTATATATTTTAATTTAAAATTA
Found at i:66377 original size:20 final size:20
Alignment explanation
Indices: 66354--66394 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
66344 TAAAAATTGA
66354 AAAGTA-ATACGAGTAAAATT
1 AAAGTACATA-GAGTAAAATT
*
66374 AAAGTACATAGATTAAAATT
1 AAAGTACATAGAGTAAAATT
66394 A
1 A
66395 TAATTGATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.27
Consensus pattern (20 bp):
AAAGTACATAGAGTAAAATT
Found at i:67696 original size:19 final size:20
Alignment explanation
Indices: 67674--67727 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 20
67664 CCGATATATA
67674 TATTTTAATTATATATT-TG
1 TATTTTAATTATATATTATG
* *
67693 TA-TTTATTTA-AGATTGATG
1 TATTTTAATTATATATT-ATG
*
67712 TATTTTGATTATATAT
1 TATTTTAATTATATAT
67728 AATAAATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
17 4 0.15
18 7 0.27
19 6 0.23
20 6 0.23
21 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (20 bp):
TATTTTAATTATATATTATG
Found at i:67758 original size:19 final size:19
Alignment explanation
Indices: 67734--67796 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
67724 ATATAATAAA
67734 TTTATATTTATTGACTATT
1 TTTATATTTATTGACTATT
67753 TTTATATTATATTTGGACTATAAT
1 TTTATATT-TA-TT-GACTAT--T
* *
67777 ATTATATTTATTGTCTATT
1 TTTATATTTATTGACTATT
67796 T
1 T
67797 AAATTTGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
19 9 0.25
20 2 0.06
21 7 0.19
22 8 0.22
23 2 0.06
24 8 0.22
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (19 bp):
TTTATATTTATTGACTATT
Found at i:70233 original size:26 final size:25
Alignment explanation
Indices: 70194--70266 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
70184 TTAATTGGAC
** *
70194 TAAAAGAGCTAATAAATATCTTCTAA
1 TAAAAGAGGAAATAAATCTCTT-TAA
*
70220 TAAAATAGGAAAT-AATCTCCTTTAA
1 TAAAAGAGGAAATAAATCT-CTTTAA
*
70245 TAAAAGAGGAATTAAATCTCTT
1 TAAAAGAGGAAATAAATCTCTT
70267 ATCTTTATCT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 21 0.54
26 18 0.46
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.32
Consensus pattern (25 bp):
TAAAAGAGGAAATAAATCTCTTTAA
Found at i:78526 original size:31 final size:31
Alignment explanation
Indices: 78490--78548 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
78480 AACTTAAAAG
*
78490 AGTTTTGCAATACTGAAATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
78521 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
78549 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:78597 original size:22 final size:22
Alignment explanation
Indices: 78572--78825 Score: 395
Period size: 22 Copynumber: 11.5 Consensus size: 22
78562 ATAATAAATT
78572 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
78594 TTTTAAAATAAATCTATCCATA
1 TTTTAAAATAAATCAATCCATA
78616 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
78638 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
78660 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
78682 TTTTAAAATAAATCAA-CTCATA
1 TTTTAAAATAAATCAATC-CATA
*
78704 TTTTAAAATAAATCAATCCATT
1 TTTTAAAATAAATCAATCCATA
**
78726 TTTTAAAATAAAT-TTTCCATA
1 TTTTAAAATAAATCAATCCATA
*
78747 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
78769 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
78791 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
78813 TTTTAAAAATAAA
1 TTTT-AAAATAAA
78826 ATTTTAAAAT
Statistics
Matches: 211, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
21 19 0.09
22 183 0.87
23 9 0.04
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:84688 original size:24 final size:24
Alignment explanation
Indices: 84651--84754 Score: 93
Period size: 24 Copynumber: 4.3 Consensus size: 24
84641 TCCCCCAATT
* * *
84651 CCTCCGCCAGCACCGCCTCCGAAA
1 CCTCCACCTGCACCACCTCCGAAA
* * **
84675 CCACCACCTGCACCGCCTCC-AGCT
1 CCTCCACCTGCACCACCTCCGA-AA
*
84699 CCTCCACCAGCACCACCTCCGAAA
1 CCTCCACCTGCACCACCTCCGAAA
* *
84723 CCTCCACCTGCTCCACCTCCTAAA
1 CCTCCACCTGCACCACCTCCGAAA
*
84747 CCGCCACC
1 CCTCCACC
84755 AAGACCTCCT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
23 1 0.02
24 62 0.97
25 1 0.02
ACGTcount: A:0.21, C:0.57, G:0.11, T:0.12
Consensus pattern (24 bp):
CCTCCACCTGCACCACCTCCGAAA
Found at i:84718 original size:48 final size:48
Alignment explanation
Indices: 84650--84742 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
84640 CTCCCCCAAT
* * *
84650 TCCTCCGCCAGCACCGCCTCCGAAACCACCACCTGCACCGCCTCCAGC
1 TCCTCCACCAGCACCACCTCCGAAACCACCACCTGCACCACCTCCAGC
* *
84698 TCCTCCACCAGCACCACCTCCGAAACCTCCACCTGCTCCACCTCC
1 TCCTCCACCAGCACCACCTCCGAAACCACCACCTGCACCACCTCC
84743 TAAACCGCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.19, C:0.57, G:0.11, T:0.13
Consensus pattern (48 bp):
TCCTCCACCAGCACCACCTCCGAAACCACCACCTGCACCACCTCCAGC
Found at i:84762 original size:36 final size:36
Alignment explanation
Indices: 84722--85012 Score: 195
Period size: 36 Copynumber: 8.4 Consensus size: 36
84712 CACCTCCGAA
84722 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
* * * * **
84758 ACCTCCTCCAGCTCCGCCTCCTAAACCACCACCACC
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
*
84794 ACCACCACCTGCTCCACCTCCTAAA---CCACC--G
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
84825 ----CCA---GCTCCACCTCCTAAACCGCCACCAAG
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
* * *** * *
84854 ACCTCCTCCAGCTCCACCTCCTGCTCCGCCTCCTAAACC
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACC--AA-G
* *
84893 ACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAG
1 ACC-TC--CACCTGCTCCACCTCCTAAACCGCCACCAAG
* * ** *
84932 GCCTCCTCCAACTCCACCTCCTAAACCACCACC-AG
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
*
84967 -----CACCTGCTCCGCCTCCTAAACCGCCACCAAG
1 ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
*
84998 ACCTCCTCCTGCTCC
1 ACCTCCACCTGCTCC
85013 TCCACCACCA
Statistics
Matches: 192, Mismatches: 39, Indels: 48
0.69 0.14 0.17
Matches are distributed among these distances:
24 15 0.08
27 8 0.04
29 1 0.01
30 23 0.12
31 2 0.01
33 7 0.04
35 2 0.01
36 102 0.53
38 3 0.02
39 5 0.03
40 3 0.02
42 21 0.11
ACGTcount: A:0.23, C:0.54, G:0.09, T:0.14
Consensus pattern (36 bp):
ACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAG
Found at i:84813 original size:96 final size:96
Alignment explanation
Indices: 84702--84875 Score: 285
Period size: 96 Copynumber: 1.8 Consensus size: 96
84692 TCCAGCTCCT
* *
84702 CCACCAGCACCACCTCCGAAACCTCCACCTGCTCCACCTCCTAAACCGCCACCAAGACCTCCTCC
1 CCACCAGCACCACCTCCGAAACCACCACCAGCTCCACCTCCTAAACCGCCACCAAGACCTCCTCC
*
84767 AGCTCCGCCTCCTAAACCACCACCACCACCA
66 AGCTCCACCTCCTAAACCACCACCACCACCA
* * * *
84798 CCACCTGCTCCACCTCCTAAACCACCGCCAGCTCCACCTCCTAAACCGCCACCAAGACCTCCTCC
1 CCACCAGCACCACCTCCGAAACCACCACCAGCTCCACCTCCTAAACCGCCACCAAGACCTCCTCC
84863 AGCTCCACCTCCT
66 AGCTCCACCTCCT
84876 GCTCCGCCTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.24, C:0.55, G:0.07, T:0.13
Consensus pattern (96 bp):
CCACCAGCACCACCTCCGAAACCACCACCAGCTCCACCTCCTAAACCGCCACCAAGACCTCCTCC
AGCTCCACCTCCTAAACCACCACCACCACCA
Found at i:84821 original size:24 final size:24
Alignment explanation
Indices: 84794--84901 Score: 94
Period size: 24 Copynumber: 4.5 Consensus size: 24
84784 CACCACCACC
*
84794 ACCACCACCTGCTCCACCTCCTAA
1 ACCACCACCAGCTCCACCTCCTAA
*
84818 ACCACCGCCAGCTCCACCTCCTAA
1 ACCACCACCAGCTCCACCTCCTAA
* * * *
84842 ACCGCCACCAAG-ACCTCCTCC-AGC
1 ACCACCACC-AGCTCCACCTCCTA-A
* * * *
84866 TCCACCTCCTGCTCCGCCTCCTAA
1 ACCACCACCAGCTCCACCTCCTAA
84890 ACCACCACCAGC
1 ACCACCACCAGC
84902 ACCTGCTCCG
Statistics
Matches: 63, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
23 2 0.03
24 58 0.92
25 3 0.05
ACGTcount: A:0.23, C:0.55, G:0.08, T:0.14
Consensus pattern (24 bp):
ACCACCACCAGCTCCACCTCCTAA
Found at i:84909 original size:30 final size:30
Alignment explanation
Indices: 84873--85025 Score: 148
Period size: 30 Copynumber: 4.9 Consensus size: 30
84863 AGCTCCACCT
84873 CCTGCTCCGCCTCCTAAACCACCACCAGCA
1 CCTGCTCCGCCTCCTAAACCACCACCAGCA
* *
84903 CCTGCTCCGCCTCCTAAACCGCCACCAAGGCCT
1 CCTGCTCCGCCTCCTAAACCACCACC-A-G-CA
* *
84936 CCTCCAACTCCACCTCCTAAACCACCACCAGCA
1 CCT---GCTCCGCCTCCTAAACCACCACCAGCA
*
84969 CCTGCTCCGCCTCCTAAACCGCCACCAAG-A
1 CCTGCTCCGCCTCCTAAACCACCACC-AGCA
* **
84999 CCTCCTCCTG-CTCCTCCACCACCACCA
1 CCTGCTCC-GCCTCCTAAACCACCACCA
85026 AGTCCCCCTC
Statistics
Matches: 102, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
29 1 0.01
30 66 0.65
31 4 0.04
32 1 0.01
33 8 0.08
34 1 0.01
35 1 0.01
36 20 0.20
ACGTcount: A:0.22, C:0.54, G:0.09, T:0.14
Consensus pattern (30 bp):
CCTGCTCCGCCTCCTAAACCACCACCAGCA
Found at i:84952 original size:66 final size:66
Alignment explanation
Indices: 84877--85006 Score: 242
Period size: 66 Copynumber: 2.0 Consensus size: 66
84867 CCACCTCCTG
* *
84877 CTCCGCCTCCTAAACCACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAGGCCTCCTCCA
1 CTCCACCTCCTAAACCACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAGACCTCCTCCA
84942 A
66 A
84943 CTCCACCTCCTAAACCACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAGACCTCCTCC
1 CTCCACCTCCTAAACCACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAGACCTCCTCC
85007 TGCTCCTCCA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.23, C:0.54, G:0.09, T:0.14
Consensus pattern (66 bp):
CTCCACCTCCTAAACCACCACCAGCACCTGCTCCGCCTCCTAAACCGCCACCAAGACCTCCTCCA
A
Found at i:85026 original size:30 final size:30
Alignment explanation
Indices: 84877--85049 Score: 145
Period size: 30 Copynumber: 5.6 Consensus size: 30
84867 CCACCTCCTG
*
84877 CTCCGCCTCCTAAACCACCACC-AGCACCTG
1 CTCCGCCTCCTAAACCACCACCAAG-ACCTC
* *
84907 CTCCGCCTCCTAAACCGCCACCAAGGCCTCCTCC
1 CTCCGCCTCCTAAACCACCACCAA-G--ACCT-C
* *
84941 AACTCCACCTCCTAAACCACCACC-AGCACCTG
1 --CTCCGCCTCCTAAACCACCACCAAG-ACCTC
*
84973 CTCCGCCTCCTAAACCGCCACCAAGACCTC
1 CTCCGCCTCCTAAACCACCACCAAGACCTC
** * *
85003 CTCCTG-CTCCTCCACCACCACCAAGTCCCC
1 CTCC-GCCTCCTAAACCACCACCAAGACCTC
*
85033 CTCCACCTCCTAAACCA
1 CTCCGCCTCCTAAACCA
85050 GCGCCACCGC
Statistics
Matches: 116, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
30 81 0.70
31 4 0.03
32 1 0.01
33 8 0.07
34 1 0.01
35 1 0.01
36 20 0.17
ACGTcount: A:0.23, C:0.54, G:0.08, T:0.14
Consensus pattern (30 bp):
CTCCGCCTCCTAAACCACCACCAAGACCTC
Found at i:85123 original size:42 final size:42
Alignment explanation
Indices: 85035--85138 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 42
85025 AAGTCCCCCT
* * *
85035 CCACCTCCTAAACCAGCGCCACCGCCAAGCCCTCCACCAGCT
1 CCACCGCCTAAACCAGCACCACCGCCAAGCCCTCCACCAGCA
* * * *
85077 CCACCGCCTACACCAGCACCACCGCCGAGCCCTCCTCCGGCA
1 CCACCGCCTAAACCAGCACCACCGCCAAGCCCTCCACCAGCA
* * *
85119 CCACCACCCAAACCACCACC
1 CCACCGCCTAAACCAGCACC
85139 GAAATTATCC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.24, C:0.58, G:0.12, T:0.07
Consensus pattern (42 bp):
CCACCGCCTAAACCAGCACCACCGCCAAGCCCTCCACCAGCA
Found at i:102101 original size:32 final size:32
Alignment explanation
Indices: 102065--102129 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
102055 TTGTCGCGTA
*
102065 TGAGGCTCTTTCTTTTGTAGTTTGCATGACGC
1 TGAGGCTCTTTCTTGTGTAGTTTGCATGACGC
102097 TGAGGCTCTTTCTTGTGTAGTTTGCATGACGC
1 TGAGGCTCTTTCTTGTGTAGTTTGCATGACGC
102129 T
1 T
102130 TTTTTCCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.12, C:0.18, G:0.26, T:0.43
Consensus pattern (32 bp):
TGAGGCTCTTTCTTGTGTAGTTTGCATGACGC
Found at i:104345 original size:2 final size:2
Alignment explanation
Indices: 104338--104365 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
104328 AACCCTATCA
104338 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104366 CTACAACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114460 original size:30 final size:30
Alignment explanation
Indices: 114419--114480 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
114409 GTTGATTATC
114419 AAACTTTTAAAT-GTTATAAAATTATCATT
1 AAACTTTTAAATGGTTATAAAATTATCATT
*
114448 AAACTTCTTAAATGGTTATAAAATTATGATT
1 AAACTT-TTAAATGGTTATAAAATTATCATT
114479 AA
1 AA
114481 CATTTATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 6 0.20
30 6 0.20
31 18 0.60
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (30 bp):
AAACTTTTAAATGGTTATAAAATTATCATT
Found at i:114864 original size:3 final size:3
Alignment explanation
Indices: 114856--114900 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
114846 TAATTTCTCA
114856 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
114901 GTCGCCAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CTC
Found at i:120862 original size:9 final size:9
Alignment explanation
Indices: 120839--120872 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
120829 CGAGCATTAC
120839 AAAATATTG
1 AAAATATTG
120848 -AAATATTG
1 AAAATATTG
120856 AAAATATTG
1 AAAATATTG
*
120865 AAATTATT
1 AAAATATT
120873 ACAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (9 bp):
AAAATATTG
Found at i:121156 original size:130 final size:130
Alignment explanation
Indices: 120988--121509 Score: 1026
Period size: 130 Copynumber: 4.0 Consensus size: 130
120978 AGATTTGAAG
120988 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
1 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
*
121053 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGAAACTGATCAGCTGCTGCT
66 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
121118 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
1 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
121183 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
66 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
121248 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
1 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
121313 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
66 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
*
121378 GCTAAGAAGAACAGGAGAAATACCTTGTTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
1 GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
121443 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
66 GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
121508 GC
1 GC
121510 ATCTGCAGCT
Statistics
Matches: 390, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 390 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (130 bp):
GCTAAGAAGAACAGGAGAAATACCTTGGTAAAGAAAAGTTCTTAGCATCCTTTCCAATATCATAA
GACAAGTCGGGTCATCATCAACAACAACAATACGCAAACCAACAGGGAACTGATCAGCTGCTGCT
Found at i:133247 original size:21 final size:20
Alignment explanation
Indices: 133223--133262 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
133213 GTATAATTTA
133223 AAAATAT-TTCTTTATTCTAAT
1 AAAATATATT-TTTA-TCTAAT
133244 AAAATATATTTTTATCTAA
1 AAAATATATTTTTATCTAA
133263 AACATAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 11 0.61
22 2 0.11
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
AAAATATATTTTTATCTAAT
Found at i:133772 original size:13 final size:13
Alignment explanation
Indices: 133754--133811 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
133744 ATTTCAGAAC
133754 TTTCATATTTCAT
1 TTTCATATTTCAT
* * *
133767 TTTCATCTTTTAA
1 TTTCATATTTCAT
133780 TTTCATA-TTCAT
1 TTTCATATTTCAT
* *
133792 TTCCACATTTCAT
1 TTTCATATTTCAT
133805 TTTCATA
1 TTTCATA
133812 ACCAGTACTT
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
12 8 0.24
13 26 0.76
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTCATATTTCAT
Found at i:133784 original size:19 final size:19
Alignment explanation
Indices: 133760--133810 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
133750 GAACTTTCAT
**
133760 ATTTCATTTTCATCTTTTA-
1 ATTTCATTTTCAT-TTCCAC
*
133779 ATTTCATATTCATTTCCAC
1 ATTTCATTTTCATTTCCAC
133798 ATTTCATTTTCAT
1 ATTTCATTTTCAT
133811 AACCAGTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 3 0.11
19 24 0.89
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTCATTTTCATTTCCAC
Found at i:136790 original size:50 final size:50
Alignment explanation
Indices: 136706--136807 Score: 120
Period size: 50 Copynumber: 2.0 Consensus size: 50
136696 ATATGCCTAA
* *
136706 TTTAAATTATTAATTAATGAAATATTTAATTTTTAGTTATATTA-TAGATT
1 TTTAAAATATTAATTAATAAAATATTTAATTTTTAGTTA-ATTAGTAGATT
* *
136756 TTTAAAATATTAA-TAA-AAAATATTTAATTATTTTATTTAATTAGTTGATT
1 TTTAAAATATTAATTAATAAAATATTTAA-T-TTTTAGTTAATTAGTAGATT
136806 TT
1 TT
136808 AACTTTGAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
48 10 0.22
49 8 0.18
50 27 0.60
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (50 bp):
TTTAAAATATTAATTAATAAAATATTTAATTTTTAGTTAATTAGTAGATT
Found at i:138175 original size:63 final size:63
Alignment explanation
Indices: 138099--138320 Score: 282
Period size: 63 Copynumber: 3.5 Consensus size: 63
138089 AAGAAAACGA
* ** * * *
138099 AAGCTCTTTTCGAGCAATGATGACGATGATTTCGCATTGTGGGGGATGAAATCTCGCGATCGG
1 AAGCTCTTCTCGAGCAGCGACGACGATGATTTCGCACTGTGGGGGATGAAATCCCGCGATCGG
* *
138162 AAGCTCTTCTCGAGCAGCGACGACGATGATTTTGCACTATGGGGGATGAAATCCCGCGATCGG
1 AAGCTCTTCTCGAGCAGCGACGACGATGATTTCGCACTGTGGGGGATGAAATCCCGCGATCGG
* * ** ** *
138225 AAGCTCTTCTCGAGCAGCGACGACGACGATTTCGCACAGTGGGGGATGAAATCCCGTAAAAGA
1 AAGCTCTTCTCGAGCAGCGACGACGATGATTTCGCACTGTGGGGGATGAAATCCCGCGATCGG
* * *
138288 AAGCTCTTGTTGAGCAGCGACAACGATGATTTC
1 AAGCTCTTCTCGAGCAGCGACGACGATGATTTC
138321 CCAACGTGGA
Statistics
Matches: 138, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 138 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (63 bp):
AAGCTCTTCTCGAGCAGCGACGACGATGATTTCGCACTGTGGGGGATGAAATCCCGCGATCGG
Found at i:142329 original size:150 final size:150
Alignment explanation
Indices: 142081--142460 Score: 647
Period size: 150 Copynumber: 2.5 Consensus size: 150
142071 GTGGCGGCGG
* *
142081 CGACGATTTCTCACAGTGGGGTAGGATGGAATACCACGGTCGAAAACTTTCGTGGCTGGAAGGTC
1 CGACGATTTTTCACAGTGGGGTGGGATGGAATACCACGGTCGAAAACTTTCGTGGCTGGAAGGTC
*
142146 TCTTCAAAACACCAGATCATGACGGTGCAATCACAGGGTGGATGATCAAATCACCCCAAAGAAAG
66 TCTTCAAAACACCTGATCATGACGGTGCAATCACAGGGTGGATGATCAAATCACCCCAAAGAAAG
142211 CTCTTATCGCGCAGCGACGA
131 CTCTTATCGCGCAGCGACGA
*
142231 CGACGATTTTTCACAGTGGGGTGGGATGGAATACCACGGTCGAAAACTTTCGTGGCTGGAAGGTA
1 CGACGATTTTTCACAGTGGGGTGGGATGGAATACCACGGTCGAAAACTTTCGTGGCTGGAAGGTC
142296 TCTTCAAAACACCTGATCATGACGGTGCAATCACAGGGTGGATGATCAAATCACCCCAAAGAAAG
66 TCTTCAAAACACCTGATCATGACGGTGCAATCACAGGGTGGATGATCAAATCACCCCAAAGAAAG
142361 CTCTTATCGCGCAGCGACGA
131 CTCTTATCGCGCAGCGACGA
* * * * *
142381 CGACGATTTTTCACAGTGGGGTGGGATGAAAT-CC-CGTGATCGAAAACTTTTGTGGATGGGAGA
1 CGACGATTTTTCACAGTGGGGTGGGATGGAATACCACG-G-TCGAAAACTTTCGTGGCTGGAAGG
142444 TCTCTTCAAAACACCTG
64 TCTCTTCAAAACACCTG
142461 CTGACAACGA
Statistics
Matches: 218, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
148 2 0.01
149 3 0.01
150 213 0.98
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (150 bp):
CGACGATTTTTCACAGTGGGGTGGGATGGAATACCACGGTCGAAAACTTTCGTGGCTGGAAGGTC
TCTTCAAAACACCTGATCATGACGGTGCAATCACAGGGTGGATGATCAAATCACCCCAAAGAAAG
CTCTTATCGCGCAGCGACGA
Found at i:146021 original size:63 final size:63
Alignment explanation
Indices: 145929--146153 Score: 270
Period size: 63 Copynumber: 3.6 Consensus size: 63
145919 TCCACGTTGG
* * * ** ** * *
145929 GAAATCATCGTTGTCGCTGCTCAACAAGAGCTTTCTTTAACGGGATTTCATCCCCCACTGTGC
1 GAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTTCGATCGCGAGATTTCATCCCCCACAGTGC
* * * *
145992 GAAATCGTCGTCGTCGTTGCTCGAGAAGAGCTTTCGATCGCGAGATATCATGCCCCACAGTGC
1 GAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTTCGATCGCGAGATTTCATCCCCCACAGTGC
* * *
146055 AAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTCCGATCGCGAGATTTCATCCCCCACAATGC
1 GAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTTCGATCGCGAGATTTCATCCCCCACAGTGC
* ** *
146118 CAAATCATCGTCGTCATTGCTCGAAAAGAGCTTTCG
1 GAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTTCG
146154 TTTTCTTAAT
Statistics
Matches: 137, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 137 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (63 bp):
GAAATCATCGTCGTCGCTGCTCGAGAAGAGCTTTCGATCGCGAGATTTCATCCCCCACAGTGC
Found at i:150290 original size:16 final size:15
Alignment explanation
Indices: 150260--150291 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
150250 ATATCTATAG
150260 TTTTATTTTTTTTAA
1 TTTTATTTTTTTTAA
150275 TTTTATTTTATTTTAA
1 TTTTATTTT-TTTTAA
150291 T
1 T
150292 ACAACATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTTTTAA
Found at i:150425 original size:17 final size:17
Alignment explanation
Indices: 150403--150449 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
150393 TTTGATGTTG
150403 AAATATTAAAATAAAAT
1 AAATATTAAAATAAAAT
*
150420 AAATATTAAATATTAAAT
1 AAATATTAAA-ATAAAAT
*
150438 ATAATTTTAAAA
1 A-AATATTAAAA
150450 AAATTAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 10 0.38
18 8 0.31
19 8 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATTAAAATAAAAT
Found at i:154365 original size:24 final size:21
Alignment explanation
Indices: 154321--154361 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
154311 TATAAAAATT
154321 TACCTAAAACATTATTATTTA
1 TACCTAAAACATTATTATTTA
*
154342 TACCTAAAACATTAATATTT
1 TACCTAAAACATTATTATTT
154362 TTTAACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (21 bp):
TACCTAAAACATTATTATTTA
Found at i:156046 original size:15 final size:15
Alignment explanation
Indices: 156028--156062 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
156018 CGAGGGTATT
156028 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
156043 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
156058 GTAGT
1 GTAGT
156063 GGTCCTACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:161720 original size:21 final size:21
Alignment explanation
Indices: 161695--161769 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
161685 AGTATGTGCA
161695 GGGGG-AACAGATTCCCCCTGG
1 GGGGGTAAC-GATTCCCCCTGG
*
161716 GGGGGTATCGATT-CCCC---
1 GGGGGTAACGATTCCCCCTGG
161733 --GGG-AACAGATTCCCCCTGG
1 GGGGGTAAC-GATTCCCCCTGG
*
161752 GGGGGTATCGATTCCCCC
1 GGGGGTAACGATTCCCCC
161770 CTAAATGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
14 2 0.05
15 7 0.17
16 4 0.10
20 4 0.10
21 21 0.50
22 4 0.10
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.19
Consensus pattern (21 bp):
GGGGGTAACGATTCCCCCTGG
Found at i:161744 original size:36 final size:36
Alignment explanation
Indices: 161697--161768 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
161687 TATGTGCAGG
161697 GGGAACAGATTCCCCCTGGGGGGGTATCGATTCCCC
1 GGGAACAGATTCCCCCTGGGGGGGTATCGATTCCCC
161733 GGGAACAGATTCCCCCTGGGGGGGTATCGATTCCCC
1 GGGAACAGATTCCCCCTGGGGGGGTATCGATTCCCC
161769 CCTAAATGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (36 bp):
GGGAACAGATTCCCCCTGGGGGGGTATCGATTCCCC
Found at i:163860 original size:28 final size:27
Alignment explanation
Indices: 163812--163867 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
163802 ATTTTGTTCG
163812 GGTTTTTTAAGTATGACATTCGGGTCA
1 GGTTTTTTAAGTATGACATTCGGGTCA
* **
163839 GGTTTTTTAAAGTGTGGTATTCGGGTCA
1 GGTTTTTT-AAGTATGACATTCGGGTCA
163867 G
1 G
163868 ATTCGGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.20, C:0.09, G:0.30, T:0.41
Consensus pattern (27 bp):
GGTTTTTTAAGTATGACATTCGGGTCA
Found at i:168555 original size:3 final size:3
Alignment explanation
Indices: 168535--168593 Score: 93
Period size: 3 Copynumber: 20.0 Consensus size: 3
168525 TATAATGTAT
* *
168535 TAA TAT TAA TAA -AA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
168582 TAA TAA TAA TAA
1 TAA TAA TAA TAA
168594 AACCCGGACA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:169481 original size:3 final size:3
Alignment explanation
Indices: 169473--169510 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
169463 TGTCCATGCA
169473 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT A
169511 TAAAAGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:170694 original size:60 final size:60
Alignment explanation
Indices: 170605--170761 Score: 174
Period size: 60 Copynumber: 2.6 Consensus size: 60
170595 TTGGGTTACG
* * * * ** * *
170605 ATTTTGTAACTTTTAATAATTGAGGGACTTAATGAAGCA-TCATTCTATAGTC-ATATGACC
1 ATTTTGTAACTTTTAATAGTCGAAGGACTTAATAAAGCAGT-ACCCCATAGTCGAGA-GACC
* * *
170665 GTTTTGTAACTTTTAATAGTCGAACGACTTAATAAAGCAGTACCCCATAGTCGGGAGACC
1 ATTTTGTAACTTTTAATAGTCGAAGGACTTAATAAAGCAGTACCCCATAGTCGAGAGACC
*
170725 ATTTTGTAACTTTTAATAGTCGATGGACTTAATAAAG
1 ATTTTGTAACTTTTAATAGTCGAAGGACTTAATAAAG
170762 TATTACCTTA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
60 79 0.98
61 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (60 bp):
ATTTTGTAACTTTTAATAGTCGAAGGACTTAATAAAGCAGTACCCCATAGTCGAGAGACC
Found at i:170797 original size:60 final size:60
Alignment explanation
Indices: 170669--170798 Score: 154
Period size: 60 Copynumber: 2.2 Consensus size: 60
170659 ATGACCGTTT
* *
170669 TGTAACTTTTAATAGTCGAACGACTTAATAAAGCAGTACCCCATAGTCGGGAGACCATTT
1 TGTAACTTTTAATAGTCGAACGACTTAATAAAGCAGTACCCCATAATCGGGAGACCATTA
** * * ** * *
170729 TGTAACTTTTAATAGTCGATGGACTTAATAAAGTATTACCTTATAATTGGGGGACCATCTA
1 TGTAACTTTTAATAGTCGAACGACTTAATAAAGCAGTACCCCATAATCGGGAGACCAT-TA
170790 TGT-ACTTTT
1 TGTAACTTTT
170799 CCCTGAAATT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 55 0.93
61 4 0.07
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (60 bp):
TGTAACTTTTAATAGTCGAACGACTTAATAAAGCAGTACCCCATAATCGGGAGACCATTA
Found at i:175029 original size:21 final size:21
Alignment explanation
Indices: 175004--175045 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
174994 GAATAGAACT
175004 CGAACTCGACCTCGATTTCCA
1 CGAACTCGACCTCGATTTCCA
175025 CGAACTCGACCTCGATTTCCA
1 CGAACTCGACCTCGATTTCCA
175046 GCAATAGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.38, G:0.14, T:0.24
Consensus pattern (21 bp):
CGAACTCGACCTCGATTTCCA
Found at i:184840 original size:60 final size:60
Alignment explanation
Indices: 184760--184919 Score: 279
Period size: 60 Copynumber: 2.7 Consensus size: 60
184750 ATTTTGTAAC
*
184760 TTTTAATAGTCGA-GAGACTCAACAAAGCAATGACATATAATTAAGGGACCATTTTATATG
1 TTTTAATAATCGACGA-ACTCAACAAAGCAATGACATATAATTAAGGGACCATTTTATATG
184820 TTTTAATAATCGACGAACTCAACAAAGCAATGACATATAATTAAGGGACCATTTTATATG
1 TTTTAATAATCGACGAACTCAACAAAGCAATGACATATAATTAAGGGACCATTTTATATG
*
184880 TTTTAATAATCGACGAACTCAACAAAGCAATG-CCTATAAT
1 TTTTAATAATCGACGAACTCAACAAAGCAATGACATATAAT
184920 CGAGAGACTC
Statistics
Matches: 97, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
59 7 0.07
60 88 0.91
61 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (60 bp):
TTTTAATAATCGACGAACTCAACAAAGCAATGACATATAATTAAGGGACCATTTTATATG
Found at i:184921 original size:30 final size:31
Alignment explanation
Indices: 184885--184950 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
184875 ATATGTTTTA
*
184885 ATAATCGACGA-ACTCAACAAAGCAATG-CCT
1 ATAATCGA-GAGACTCAACAAAGCAATGACAT
*
184915 ATAATCGAGAGACTCGACAAAGCAATGACAT
1 ATAATCGAGAGACTCAACAAAGCAATGACAT
184946 ATAAT
1 ATAAT
184951 TAAGGGACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 2 0.06
30 23 0.72
31 7 0.22
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.18
Consensus pattern (31 bp):
ATAATCGAGAGACTCAACAAAGCAATGACAT
Found at i:187638 original size:19 final size:18
Alignment explanation
Indices: 187606--187655 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
187596 TTTTCATGTT
* *
187606 TATCAAACAAATATAATT
1 TATCAAACATATATAATG
*
187624 TATATAAACATATATAATG
1 TAT-CAAACATATATAATG
187643 TATCAAACATATA
1 TATCAAACATATA
187656 AGCTTTGTGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (18 bp):
TATCAAACATATATAATG
Found at i:189512 original size:14 final size:14
Alignment explanation
Indices: 189493--189542 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
189483 TTATCTATTG
189493 ATCAAATAATTCAA
1 ATCAAATAATTCAA
*
189507 ATCAAAT-ATT-ATTG
1 ATCAAATAATTCA--A
*
189521 ATTAAATAATTCAA
1 ATCAAATAATTCAA
189535 ATCAAATA
1 ATCAAATA
189543 TTATACGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
12 1 0.04
13 3 0.11
14 20 0.71
15 3 0.11
16 1 0.04
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (14 bp):
ATCAAATAATTCAA
Found at i:189527 original size:28 final size:28
Alignment explanation
Indices: 189488--189546 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
189478 TTATTTTATC
189488 TATTGATCAAATAATTCAAATCAAATAT
1 TATTGATCAAATAATTCAAATCAAATAT
*
189516 TATTGATTAAATAATTCAAATCAAATAT
1 TATTGATCAAATAATTCAAATCAAATAT
189544 TAT
1 TAT
189547 ACGTATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (28 bp):
TATTGATCAAATAATTCAAATCAAATAT
Found at i:189841 original size:60 final size:60
Alignment explanation
Indices: 189760--189873 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
189750 TGGTCTTTCA
*
189760 ACTATAGGACTTTGATGTGTTGAGTCACCTGA-TTATTAAAAGTTACAAAATGATCCACCG
1 ACTATAGGACTTTGATGTGTTGAGTCACCTGACTT-CTAAAAGTTACAAAATGATCCACCG
* * ** *
189820 ACTATAGGA-TGTTGTTTTGTTGAGTCATTTGACTTCTAAAAGTTATAAAATGAT
1 ACTATAGGACT-TTGATGTGTTGAGTCACCTGACTTCTAAAAGTTACAAAATGAT
189874 TACTCGACAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 1 0.02
60 43 0.93
61 2 0.04
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (60 bp):
ACTATAGGACTTTGATGTGTTGAGTCACCTGACTTCTAAAAGTTACAAAATGATCCACCG
Found at i:190930 original size:34 final size:33
Alignment explanation
Indices: 190882--190953 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 33
190872 TCTTTTGTAA
* * *
190882 AGGGGAAAGGTTCTAGCTTATCCCGTGTAAAACT
1 AGGGAAAAGGTTCTAGCTTAGCCCG-GAAAAACT
* *
190916 AGGGAAAATGTTCTAGTTTAGCCCGGAAAAACT
1 AGGGAAAAGGTTCTAGCTTAGCCCGGAAAAACT
190949 AGGGA
1 AGGGA
190954 GTTGTAAGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 12 0.36
34 21 0.64
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (33 bp):
AGGGAAAAGGTTCTAGCTTAGCCCGGAAAAACT
Found at i:192959 original size:24 final size:24
Alignment explanation
Indices: 192923--192978 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
192913 GATTTAACAA
192923 AAAGGGAGAGAAGTGTTAAGGTGTT
1 AAAGGG-GAGAAGTGTTAAGGTGTT
192948 AAAGGGGAGAAGTGTTAAGGTGTT
1 AAAGGGGAGAAGTGTTAAGGTGTT
192972 AAAGGGG
1 AAAGGGG
192979 GAGTAATTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.36, C:0.00, G:0.43, T:0.21
Consensus pattern (24 bp):
AAAGGGGAGAAGTGTTAAGGTGTT
Found at i:193361 original size:21 final size:21
Alignment explanation
Indices: 193318--193378 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
193308 TCAGATTGTA
* * *
193318 CAGGGGGTACAGA-TTCTCCC
1 CAGGGGGTACCGACTCCCCCC
**
193338 CAGGTTGTACCGACTCCCCCC
1 CAGGGGGTACCGACTCCCCCC
*
193359 CAGGGGGTACCGATTCCCCC
1 CAGGGGGTACCGACTCCCCC
193379 TGTCTAACGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 10 0.31
21 22 0.69
ACGTcount: A:0.16, C:0.39, G:0.26, T:0.18
Consensus pattern (21 bp):
CAGGGGGTACCGACTCCCCCC
Found at i:197234 original size:20 final size:20
Alignment explanation
Indices: 197209--197249 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
197199 TTTGTGTTAA
197209 TTTTATTGA-TTAATTTAATT
1 TTTTATT-ATTTAATTTAATT
*
197229 TTTTATTATTTAATTTTATT
1 TTTTATTATTTAATTTAATT
197249 T
1 T
197250 AATCGACGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTTATTATTTAATTTAATT
Found at i:202515 original size:148 final size:148
Alignment explanation
Indices: 202247--202822 Score: 859
Period size: 148 Copynumber: 4.0 Consensus size: 148
202237 CTTTGATTCA
*
202247 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACAACAGGGACGGCTCAAACCA
1 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
*
202312 CCATTAATGGTCTGTTCCAGTGTCTGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTCTGAGT
66 CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTCTGAGT
202377 CAGCTCCCGAGTTTATCC
131 CAGCTCCCGAGTTTATCC
202395 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
1 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
* *
202460 CCATTAATGGTCTGTTCCAGTGTCTGGGAGACCTGAGCAGCAACTAATACTACAGCTGTCTGAGT
66 CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTCTGAGT
202525 CAGCTCCCGAGTTTATCC
131 CAGCTCCCGAGTTTATCC
*
202543 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAAGCA
1 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
* *
202608 CC----A-------TTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACA-C-ATCAATTA
66 CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTC--TGA
* * *
202660 AT-AG-T--C-TG-TT-TCA
129 GTCAGCTCCCGAGTTTATCC
* * *
202673 GATACTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCGAACCA
1 GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
* *
202738 CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGTAACTAATGCTACAGCTGTGTGAGT
66 CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTCTGAGT
202803 CAGCTCCCGAGTTTATCC
131 CAGCTCCCGAGTTTATCC
202821 GA
1 GA
202823 GAAACTCTGT
Statistics
Matches: 385, Mismatches: 21, Indels: 44
0.86 0.05 0.10
Matches are distributed among these distances:
130 65 0.17
131 2 0.01
132 1 0.00
133 1 0.00
134 1 0.00
135 3 0.01
136 3 0.01
137 41 0.11
141 42 0.11
142 3 0.01
143 2 0.01
144 1 0.00
145 1 0.00
146 1 0.00
147 2 0.01
148 216 0.56
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (148 bp):
GACATTGGTTTCACAGTCCATGAAGCTTAAGCTTTACAAGACAACGACAGGGACGGCTCAAACCA
CCATTAATGGTCTGTTCCAGTGTCGGGGAGACCTGAGCAGCAACTAATGCTACAGCTGTCTGAGT
CAGCTCCCGAGTTTATCC
Found at i:204576 original size:29 final size:30
Alignment explanation
Indices: 204505--204577 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
204495 GATTTGATAG
*
204505 TTCAATTGTATAATTAAAATAAAAATCAAAA
1 TTCAATAGTATAATT-AAATAAAAATCAAAA
* *
204536 TTCAATACTATAATT-AATAAAACT-AAAA
1 TTCAATAGTATAATTAAATAAAAATCAAAA
*
204564 TTTCAATGGTATAA
1 -TTCAATAGTATAA
204578 AAGATATATC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.11
29 19 0.53
31 13 0.36
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.34
Consensus pattern (30 bp):
TTCAATAGTATAATTAAATAAAAATCAAAA
Found at i:207425 original size:43 final size:43
Alignment explanation
Indices: 207364--207450 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
207354 TTTCAATGGT
* *
207364 TATCAAGAGGGGGCACTGATGCCTTCAATCCATGCTTTTGCCC
1 TATCAAGAGGGGGCACTGATACCTTCAACCCATGCTTTTGCCC
*
207407 TATCAAGATGGGGCACTGATACCTTCAACCCATGCTTTTGCCC
1 TATCAAGAGGGGGCACTGATACCTTCAACCCATGCTTTTGCCC
207450 T
1 T
207451 CATTTGTGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (43 bp):
TATCAAGAGGGGGCACTGATACCTTCAACCCATGCTTTTGCCC
Found at i:213674 original size:19 final size:20
Alignment explanation
Indices: 213652--213691 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
213642 CTGGTTCACC
*
213652 CAAAATTAGCTTAAAT-GTA
1 CAAAATGAGCTTAAATAGTA
213671 CAAAATGAGCTTAAATAGTA
1 CAAAATGAGCTTAAATAGTA
213691 C
1 C
213692 CCTCTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
CAAAATGAGCTTAAATAGTA
Found at i:217091 original size:69 final size:65
Alignment explanation
Indices: 216956--217095 Score: 199
Period size: 69 Copynumber: 2.1 Consensus size: 65
216946 TGCAAGTGCA
* * *
216956 GCCAATGCCATTGTTTAGTGATTTCGTTTCCCTGAAACTTTGCTGTATCTTTTAAGTTTATATTT
1 GCCATTGCCATTGTTTAGTGATTTCATTTCCCTGAAACTTTGCTGGATCTTTTAAGTTTATATTT
* *
217021 GCCATTGCCATTGTTTAGTGATTTTATTTCCGTGAAACATACTTTGCTGGATCTTTTAAGTTTAT
1 GCCATTGCCATTGTTTAGTGATTTCATTTCCCTG--A-A-ACTTTGCTGGATCTTTTAAGTTTAT
217086 ATTT
62 ATTT
217090 GCCATT
1 GCCATT
217096 CTGAACTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
65 30 0.45
67 1 0.02
68 1 0.02
69 34 0.52
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (65 bp):
GCCATTGCCATTGTTTAGTGATTTCATTTCCCTGAAACTTTGCTGGATCTTTTAAGTTTATATTT
Found at i:219611 original size:25 final size:25
Alignment explanation
Indices: 219571--219622 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
219561 TGTTATGCGA
* *
219571 ATTCGGGTTCGGGTGTCGGATGTGT
1 ATTCGGGTTCGAGTGTCGAATGTGT
*
219596 ATTCGGGTTTGAGTGTCGAATGTGT
1 ATTCGGGTTCGAGTGTCGAATGTGT
219621 AT
1 AT
219623 GTATCCGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.13, C:0.10, G:0.38, T:0.38
Consensus pattern (25 bp):
ATTCGGGTTCGAGTGTCGAATGTGT
Found at i:219644 original size:44 final size:44
Alignment explanation
Indices: 219594--219717 Score: 169
Period size: 44 Copynumber: 2.8 Consensus size: 44
219584 TGTCGGATGT
* *
219594 GTATTCGGGTTTGAGTGTCGAATGTGTATGTATCCGACAGGGGC
1 GTATTCGGGTTTGAGTGTCGGATGTGTATGTATCCGACAGGGGA
* *
219638 GTATTC-GGTTTCGGGTGTCGGATGTGTATGTATCCCACAGGGGA
1 GTATTCGGGTTT-GAGTGTCGGATGTGTATGTATCCGACAGGGGA
* * *
219682 GTATTCGGGTTCGAATGTCGGATATGTATGTATCCG
1 GTATTCGGGTTTGAGTGTCGGATGTGTATGTATCCG
219718 GCACAGGTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 5 0.07
44 60 0.87
45 4 0.06
ACGTcount: A:0.18, C:0.15, G:0.35, T:0.33
Consensus pattern (44 bp):
GTATTCGGGTTTGAGTGTCGGATGTGTATGTATCCGACAGGGGA
Found at i:221450 original size:30 final size:30
Alignment explanation
Indices: 221416--221492 Score: 73
Period size: 30 Copynumber: 2.6 Consensus size: 30
221406 TCCTCCTTTC
* *
221416 CCAATGCCGCCGCCATGTCCACCACCCTTG
1 CCAATGCCGCCGCCAAGACCACCACCCTTG
* * * * *
221446 CCAATTCCTCCTCCAAGACCGCCACCCTTT
1 CCAATGCCGCCGCCAAGACCACCACCCTTG
* *
221476 CCAATGCCACCACCAAG
1 CCAATGCCGCCGCCAAG
221493 CTCCGTACCG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.49, G:0.12, T:0.17
Consensus pattern (30 bp):
CCAATGCCGCCGCCAAGACCACCACCCTTG
Found at i:221586 original size:48 final size:48
Alignment explanation
Indices: 221467--221571 Score: 142
Period size: 48 Copynumber: 2.2 Consensus size: 48
221457 TCCAAGACCG
* * * *
221467 CCACCCTTTCCAATGCCACCACCAAGCTCCGTACCGTTTCCATGTCCA
1 CCACCTTTTCCTATACCACCACCAAGCTCCGTACCCTTTCCATGTCCA
221515 CCACCTTTTCCTATACCACCACCAATGC-CTC-TACCCTTTCCATGTCCA
1 CCACCTTTTCCTATACCACCACCAA-GCTC-CGTACCCTTTCCATGTCCA
221563 CCACCTTTT
1 CCACCTTTT
221572 TTAACTCCAC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
48 48 0.94
49 3 0.06
ACGTcount: A:0.20, C:0.46, G:0.07, T:0.28
Consensus pattern (48 bp):
CCACCTTTTCCTATACCACCACCAAGCTCCGTACCCTTTCCATGTCCA
Found at i:221607 original size:51 final size:48
Alignment explanation
Indices: 221504--221607 Score: 111
Period size: 51 Copynumber: 2.1 Consensus size: 48
221494 TCCGTACCGT
** * **
221504 TTCCATGTCCACCACCTTTTCCTATACCACCACCAATGCCTCTACCCT
1 TTCCATGTCCACCACCTTTTCCTATACCACCACCAAACCCTCCACCAG
*
221552 TTCCATGTCCACCACCTTTT-TTAACTCCACCACCACCAAACCCTCCACCAG
1 TTCCATGTCCACCACCTTTTCCT-A-T--ACCACCACCAAACCCTCCACCAG
221603 TTCCA
1 TTCCA
221608 CCGCCACCTC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
47 1 0.02
48 21 0.46
49 1 0.02
51 23 0.50
ACGTcount: A:0.23, C:0.46, G:0.04, T:0.27
Consensus pattern (48 bp):
TTCCATGTCCACCACCTTTTCCTATACCACCACCAAACCCTCCACCAG
Found at i:221648 original size:30 final size:30
Alignment explanation
Indices: 221578--221651 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
221568 TTTTTTAACT
* * * *
221578 CCACCACCACCAAACCCTCCACCAGTTCCA
1 CCACCACCTCCAAGCCCTCCACCACTACCA
*
221608 CCGCCACCTCCAAGCCCTCCACCACTACCA
1 CCACCACCTCCAAGCCCTCCACCACTACCA
* *
221638 TCACCTCCTCCAAG
1 CCACCACCTCCAAG
221652 ACGTTCACCT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.57, G:0.05, T:0.12
Consensus pattern (30 bp):
CCACCACCTCCAAGCCCTCCACCACTACCA
Found at i:222540 original size:42 final size:42
Alignment explanation
Indices: 222494--222579 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
222484 GCCTGCTCCT
* *
222494 CCACCAAAACCTCCTCCACCTCCTGCACCCCCACCAAATCCA
1 CCACCAAAACCACCTCCACCTCCAGCACCCCCACCAAATCCA
*** * * *
222536 CCACCGGCACCACCTCCTCCTCCAGCACCCCCTCCAAGTCCA
1 CCACCAAAACCACCTCCACCTCCAGCACCCCCACCAAATCCA
222578 CC
1 CC
222580 GCCACCTCCG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.59, G:0.06, T:0.12
Consensus pattern (42 bp):
CCACCAAAACCACCTCCACCTCCAGCACCCCCACCAAATCCA
Found at i:222579 original size:30 final size:30
Alignment explanation
Indices: 222545--222669 Score: 153
Period size: 30 Copynumber: 4.2 Consensus size: 30
222535 ACCACCGGCA
* * * *
222545 CCACCTCCTCCTCCAGCACCCCCTCCAAGT
1 CCACCGCCACCTCCGGCACCTCCTCCAAGT
222575 CCACCGCCACCTCCGGCACCTCCTCCAAGT
1 CCACCGCCACCTCCGGCACCTCCTCCAAGT
*
222605 CCACCGCCACCTCCGGCACCTCCTCCAAAT
1 CCACCGCCACCTCCGGCACCTCCTCCAAGT
* * * *
222635 CCACCGCC-CCAGCCTGCACCACCTCCAAAT
1 CCACCGCCACC-TCCGGCACCTCCTCCAAGT
222665 CCACC
1 CCACC
222670 ACCGGCAACG
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
29 2 0.02
30 84 0.98
ACGTcount: A:0.19, C:0.58, G:0.10, T:0.13
Consensus pattern (30 bp):
CCACCGCCACCTCCGGCACCTCCTCCAAGT
Found at i:222735 original size:30 final size:30
Alignment explanation
Indices: 222701--222804 Score: 111
Period size: 30 Copynumber: 3.5 Consensus size: 30
222691 ACCACCAAAT
222701 CCACCACCTTTTCCAATCCCGCCTCCAATG
1 CCACCACCTTTTCCAATCCCGCCTCCAATG
** * *
222731 CCACCACCTTTTCCAAAGCCGCCGCCAATA
1 CCACCACCTTTTCCAATCCCGCCTCCAATG
* * * *
222761 CCACCACCCTTTCCAATTCCACCTCCTA-G
1 CCACCACCTTTTCCAATCCCGCCTCCAATG
*
222790 CCCACCTCCTTTTCC
1 -CCACCACCTTTTCC
222805 TATTCCACCA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.20, C:0.51, G:0.06, T:0.23
Consensus pattern (30 bp):
CCACCACCTTTTCCAATCCCGCCTCCAATG
Found at i:222810 original size:30 final size:30
Alignment explanation
Indices: 222689--222843 Score: 96
Period size: 30 Copynumber: 5.2 Consensus size: 30
222679 GCCTCCAACA
** * *
222689 CCACCACCAAATCCACCACCTTTTCCAATC
1 CCACCACCAAGCCCACCTCCTTTTCCAATT
* * * **
222719 CCGCCTCCAATG-CCACCACCTTTTCCAAAG
1 CCACCACCAA-GCCCACCTCCTTTTCCAATT
* * ** * *
222749 CCGCCGCCAATACCACCACCCTTTCCAATT
1 CCACCACCAAGCCCACCTCCTTTTCCAATT
* * *
222779 CCACCTCCTAGCCCACCTCCTTTTCCTATT
1 CCACCACCAAGCCCACCTCCTTTTCCAATT
* * * *
222809 CCACCACCAAGGCCTCCTCCTTTCCCAATA
1 CCACCACCAAGCCCACCTCCTTTTCCAATT
222839 CCACC
1 CCACC
222844 GCCATGGCCA
Statistics
Matches: 98, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
30 98 1.00
ACGTcount: A:0.23, C:0.50, G:0.05, T:0.22
Consensus pattern (30 bp):
CCACCACCAAGCCCACCTCCTTTTCCAATT
Found at i:222888 original size:30 final size:30
Alignment explanation
Indices: 222851--223249 Score: 393
Period size: 30 Copynumber: 13.3 Consensus size: 30
222841 ACCGCCATGG
* *
222851 CCACCACCAAGGCCTCCACCCTTGCCAATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * *
222881 CCGCCACCAAGTCCTCCGCCCTTTCCAATG
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
222911 CCACCACCAAGTCCACCACCTTTTCCTATA
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * *
222941 CCACCTCCAAGACCTCCACCCTTGCCAATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
222971 CCACCACCAAGTCCCCCGCCCTTACCAATG
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
223001 CCACCGCCAAGGCCTCCACCCTTGCCGATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * * *
223031 CCGCCACCGAGTCCCCCACTCTTACCAATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* *
223061 CCACCACCAAGGCCTCCACCCTTGCCAATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * *
223091 CCACCACCAAGTCCCCCGCCCTTTCCAATG
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
223121 CCACCACCAAGTCCACCACCTTTTCCTATA
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
223151 CCACCTCCAAGGCCTCCTCCCTTTCCAATG
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * *
223181 CCACCACCAAGTCCACCACCTTTTCCTATT
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
* * * *
223211 CCCCCACCAAGGCCTCCACCCTTACCAATC
1 CCACCACCAAGTCCTCCACCCTTTCCAATT
223241 CCACCACCA
1 CCACCACCA
223250 GCTCCACCGC
Statistics
Matches: 292, Mismatches: 77, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 292 1.00
ACGTcount: A:0.22, C:0.51, G:0.09, T:0.19
Consensus pattern (30 bp):
CCACCACCAAGTCCTCCACCCTTTCCAATT
Found at i:222959 original size:90 final size:90
Alignment explanation
Indices: 222851--223249 Score: 447
Period size: 90 Copynumber: 4.4 Consensus size: 90
222841 ACCGCCATGG
* * *
222851 CCACCACCAAGGCCTCCACCCTTGCCAATTCCGCCACCAAGTCCTCCGCCCTTTCCAATGCCACC
1 CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCAAGGCCTCCGCCCTTTCCAATGCCACC
* *
222916 ACCAAGTCCACCACCTTTTCCTATA
66 ACCAAGTCCACCACCCTTTCCTATT
* * * * * *
222941 CCACCTCCAAGACCTCCACCCTTGCCAATTCCACCACCAAGTCCCCCGCCCTTACCAATGCCACC
1 CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCAAGGCCTCCGCCCTTTCCAATGCCACC
* * * * *
223006 GCCAAGGCCTCCACCCTTGCCGATT
66 ACCAAGTCCACCACCCTTTCCTATT
* * * * * * * *
223031 CCGCCACCGAGTCCCCCACTCTTACCAATTCCACCACCAAGGCCTCCACCCTTGCCAATTCCACC
1 CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCAAGGCCTCCGCCCTTTCCAATGCCACC
* * * *
223096 ACCAAGTCCCCCGCCCTTTCCAATG
66 ACCAAGTCCACCACCCTTTCCTATT
* * * * * * * *
223121 CCACCACCAAGTCCACCACCTTTTCCTATACCACCTCCAAGGCCTCCTCCCTTTCCAATGCCACC
1 CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCAAGGCCTCCGCCCTTTCCAATGCCACC
*
223186 ACCAAGTCCACCACCTTTTCCTATT
66 ACCAAGTCCACCACCCTTTCCTATT
* *
223211 CCCCCACCAAGGCCTCCACCCTTACCAATCCCACCACCA
1 CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCA
223250 GCTCCACCGC
Statistics
Matches: 253, Mismatches: 56, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 253 1.00
ACGTcount: A:0.22, C:0.51, G:0.09, T:0.19
Consensus pattern (90 bp):
CCACCACCAAGGCCTCCACCCTTACCAATTCCACCACCAAGGCCTCCGCCCTTTCCAATGCCACC
ACCAAGTCCACCACCCTTTCCTATT
Found at i:223278 original size:30 final size:30
Alignment explanation
Indices: 223235--223306 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
223225 TCCACCCTTA
* *
223235 CCAATCCCACCACCAGCTCCACCGCCACCT
1 CCAAGCCCTCCACCAGCTCCACCGCCACCT
*
223265 CCAAGCCCTCCACCAGCTCCTCCGCCACCT
1 CCAAGCCCTCCACCAGCTCCACCGCCACCT
223295 CCAAGCCCTCCA
1 CCAAGCCCTCCA
223307 GCACCACCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.21, C:0.60, G:0.08, T:0.11
Consensus pattern (30 bp):
CCAAGCCCTCCACCAGCTCCACCGCCACCT
Found at i:223278 original size:60 final size:60
Alignment explanation
Indices: 223046--223279 Score: 154
Period size: 60 Copynumber: 3.9 Consensus size: 60
223036 ACCGAGTCCC
* * * * * * * * *
223046 CCACTCTTACCAATTCCACCACCAAGGCCTCCACC-CTTGCC-AATTCCACCACCAAGTCCC
1 CCACCCTTACCAATCCCACCACCAAGTCCACCACCACCT-CCTAA-GCCCCCACCAAGGCCT
* * * *** * *
223106 CCGCCCTTTCCAATGCCACCACCAAGTCCACCACCTTTTCCTATA-CCACCTCCAAGGCCT
1 CCACCCTTACCAATCCCACCACCAAGTCCACCACCACCTCCTA-AGCCCCCACCAAGGCCT
* * * *** **
223166 CCTCCCTTTCCAATGCCACCACCAAGTCCACCACCTTTTCCTATTCCCCCACCAAGGCCT
1 CCACCCTTACCAATCCCACCACCAAGTCCACCACCACCTCCTAAGCCCCCACCAAGGCCT
*
223226 CCACCCTTACCAATCCCACCACC-AGCTCCACCGCCACCTCC-AAGCCCTCCACCA
1 CCACCCTTACCAATCCCACCACCAAG-TCCACCACCACCTCCTAAGCCC-CCACCA
223280 GCTCCTCCGC
Statistics
Matches: 145, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
59 6 0.04
60 135 0.93
61 3 0.02
62 1 0.01
ACGTcount: A:0.23, C:0.52, G:0.07, T:0.19
Consensus pattern (60 bp):
CCACCCTTACCAATCCCACCACCAAGTCCACCACCACCTCCTAAGCCCCCACCAAGGCCT
Found at i:245873 original size:33 final size:34
Alignment explanation
Indices: 245836--245907 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 34
245826 TGTGAAGATA
* *
245836 TTATTTTTAATTT-AATGCATTCTATTTAT-AATG
1 TTATTTGTAATTTCAATGAATTCTATTT-TCAATG
*
245869 TTA-TTGTAATTTCAATTAATTCTATTTTCAATG
1 TTATTTGTAATTTCAATGAATTCTATTTTCAATG
245902 TTATTT
1 TTATTT
245908 AAAATAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
32 9 0.27
33 22 0.67
34 2 0.06
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.58
Consensus pattern (34 bp):
TTATTTGTAATTTCAATGAATTCTATTTTCAATG
Found at i:248421 original size:2 final size:2
Alignment explanation
Indices: 248414--248446 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
248404 ATTTACTTTC
248414 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
248447 CATCTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:256343 original size:2 final size:2
Alignment explanation
Indices: 256296--256328 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
256286 TGATTTCTTT
256296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
256329 TTTTAAACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:257758 original size:20 final size:19
Alignment explanation
Indices: 257720--257758 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
257710 CAGCATGAAT
* *
257720 TAACGAAATTGTTGGTCAA
1 TAACGAAAATGTTGATCAA
257739 TAACGAAAAATGTTGATCAA
1 TAACG-AAAATGTTGATCAA
257759 AGAACCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (19 bp):
TAACGAAAATGTTGATCAA
Found at i:263195 original size:6 final size:6
Alignment explanation
Indices: 263184--263224 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
263174 ATAAATGAAT
263184 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCT
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCT
263225 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (6 bp):
CCTCTC
Found at i:270688 original size:84 final size:82
Alignment explanation
Indices: 270510--271710 Score: 970
Period size: 84 Copynumber: 14.4 Consensus size: 82
270500 AAAGTTCACA
* ** * * * * * *
270510 TGATGATGAGGGAGAGAAACCGGCAAGAAGATTACTGGGAGACAACGTTGAAGCAGAAAGTTCAT
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCGT
* *
270575 AC-GATGGTGAAAAATCA-C
65 -CTGCTGGTG-AAAACCATC
* * * * * *
270593 ATGATGTTGAGGGAGAGAAGCC-AGGAAGAAGATTATTGGAAGACAATGATGAATCAGAAAGTCG
1 -TGATGATGAGGGAGAGAAGCCGA-AAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTC-
*
270657 GTCTGCTGGGGATAAACCATC
63 GTCTGCTGGTGA-AAACCATC
* * *
270678 GGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGGTGTTGAAGT-AGAAAGTTCG
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAA-TCAGAAAG-TCG
* *
270742 TCTACCGGTGAAAACTCATC
64 TCTGCTGGTGAAAAC-CATC
* * * * * *
270762 TGATGATG-GGAGGGAGAAGCCTAAAAGGAGATTACTAGAAGACAATGATGAATCAGAAAGTTCA
1 TGATGATGAGG-GAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCG
**
270826 TCTTTTGGTGAAAACCCATC
64 TCTGCTGGTGAAAA-CCATC
* * * ** * * **
270846 TAATGATAAGGGAAAGAAGTTGAAAAGAAGATTAGTAGAAGACGATATTGAATCAGAAAGTTCAC
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCGT
*
270911 CTGCCGGTGAAAACCCAT-
65 CTGCTGGTGAAAA-CCATC
* **
270929 TAGATGATGGGGGAGAGAAGTTGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTCTG
1 T-GATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTC-G
* *
270994 TCTGCCGATGAAAACCCATC
64 TCTGCTGGTGAAAA-CCATC
* * * *
271014 GGATGATGAGGAAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGT-CGT
** * * *
271079 CCCCTGATACAAAACCATT
65 CTGCTGGT-GAAAACCATC
*** * * *
271098 TGATGATGAGGGAGAGAAGTATAAAAAAAGATTACTA-AGAGACGATGTTGAATCAGAAAGCCCT
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGA-AGACGATGTTGAATCAGAAAGTCGT
* * * *
271162 -TCCGTCAGTGAAAAATCATA
65 CTGC-T-GGTG-AAAACCATC
* * * *
271182 TGATGATG-GGGAAGAGAAGTCGAAAAGAAGATTATTAGAAGACGACGTTGAATCAGAAAGTCCT
1 TGATGATGAGGG-AGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGT-CG
*
271246 TCTG-TCGGTGAAAACTCATA
64 TCTGCT-GGTGAAAAC-CATC
* * *
271266 TGGTGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGGAGACGATGTTGAATCAGAAAGTCTGT
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTC-GT
* *
271331 CTGCCGGTGAAAAACCATA
65 CTGCTGGTG-AAAACCATC
*
271350 TGATGATGAGGGAGAGAAGCCGAAAA-ATAGATTACTAGAAGACGGTGTTGAATCTA-AAAGTCC
1 TGATGATGAGGGAGAGAAGCCGAAAAGA-AGATTACTAGAAGACGATGTTGAATC-AGAAAGT-C
** **
271413 GTCCACCAGTGAAAACCTATC
63 GTCTGCTGGTGAAAACC-ATC
* * * *
271434 GGATGATGGGGGAGAGAAGCAGAAAAGAAGATTACTAGAAGACAATGTTGAATCAGAAAGTTCGT
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCGT
*
271499 CT-TTCGGTGAAAACCTATC
65 CTGCT-GGTGAAAACC-ATC
* * *
271518 AGATGATGAGGGAGAGAAGCCGAAAA-AGAGATTATTAGAAGACGATGTTGAATCAGAAAGTCCA
1 TGATGATGAGGGAGAGAAGCCGAAAAGA-AGATTACTAGAAGACGATGTTGAATCAGAAAGT-CG
* * *
271582 TCCGCTGATACAAAACCATC
64 TCTGCTGGT-GAAAACCATC
** ** * *
271602 TGATGACAAGAAAGAGAAGCC-----G-A-A-TACTAGACGACGATGTTGAATCAGAAAGTTGTC
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTCGTC
* *
271659 TGCCGGTGAAAAGCCATT
66 TGCTGGTGAAAA-CCATC
* *
271677 TGATGATGATGGAGAGAAGCCAAAAAGAAGATTA
1 TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTA
271711 TTGGAAAATG
Statistics
Matches: 913, Mismatches: 151, Indels: 107
0.78 0.13 0.09
Matches are distributed among these distances:
74 4 0.00
75 26 0.03
76 27 0.03
77 1 0.00
78 1 0.00
80 1 0.00
81 1 0.00
82 3 0.00
83 37 0.04
84 776 0.85
85 35 0.04
86 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (82 bp):
TGATGATGAGGGAGAGAAGCCGAAAAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTCGTC
TGCTGGTGAAAACCATC
Found at i:270900 original size:252 final size:251
Alignment explanation
Indices: 270510--271583 Score: 1087
Period size: 252 Copynumber: 4.3 Consensus size: 251
270500 AAAGTTCACA
* ** * * * * * * *
270510 TGATGATGAGGGAGAGAAACCGGCAAGAAGATTACTGGGAGACAACGTTGAAGCAGAAAGTTCAT
1 TGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
** * * * ** * * * *
270575 AC-GATGGTGAAAAATCACATGATGTTGAGGGAGAGAAG-CCAGGAAGAAGATTATTGGAAGACA
66 -CTCCTGGTGAAAAACCATATGATGATGAGGGAGAGAAGTTGA-AAAGAAGATTACTAGAAGACG
* * ** * *
270638 ATGA-TGAATCAGAAAGTCGGTCTGCTGGGGATAAACCATCGGATGATGAGGGAGAGAAGCCGAA
129 AT-ATTGAATCAGAAAGTCCGTCCGCCAGTGA-AAACCATCGGATGATGGGGGAGAGAAGCCGAA
* * *
270702 AAGGAGATTACTAGAAGACGGTGTTGAAGT-AGAAAGTTCGTCTACCGGTGAAAACTCATC
192 AAGAAGATTACTAGAAGACGATGTTGAA-TCAGAAAGTTCGTCTGCCGGTGAAAACTCATC
* * * * *
270762 TGATGATG-GGAGGGAGAAGCCTAAAAGGAGATTACTAGAAGACAATGATGAATCAGAAAGTTCA
1 TGATGATGAGG-GAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCA
** * * * * * *
270826 TCTTTTGGTGAAAACCCATCTAATGATAAGGGAAAGAAGTTGAAAAGAAGATTAGTAGAAGACGA
65 TCTCCTGGTGAAAAACCATATGATGATGAGGGAGAGAAGTTGAAAAGAAGATTACTAGAAGACGA
* * * ** **
270891 TATTGAATCAGAAAGTTC-ACCTGCCGGTGAAAACCCATTAGATGATGGGGGAGAGAAGTTGAAA
130 TATTGAATCAGAAAGTCCGTCC-GCCAGTGAAAA-CCATCGGATGATGGGGGAGAGAAGCCGAAA
* *
270955 AGAAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCTGTCTGCCGATGAAAACCCATC
193 AGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTTC-GTCTGCCGGTGAAAACTCATC
* *
271014 GGATGATGAGGAAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
1 TGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
* * * *
271079 CCCCTGAT-ACAAAACCATTTGATGATGAGGGAGAGAAGTAT-AAAAAAAGATTACTA-AGAGAC
66 CTCCTGGTGA-AAAACCATATGATGATGAGGGAGAGAAGT-TGAAAAGAAGATTACTAGA-AGAC
* * * * * ** * *
271141 GATGTTGAATCAGAAAGCCCTTCCGTCAGTGAAAAATCATATGATGATGGGGAAGAGAAGTCGAA
128 GATATTGAATCAGAAAGTCCGTCCGCCAGTG-AAAACCATCGGATGATGGGGGAGAGAAGCCGAA
* * * * * *
271206 AAGAAGATTATTAGAAGACGACGTTGAATCAGAAAGTCCTTCTGTCGGTGAAAACTCATA
192 AAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTCATC
* * **
271266 TGGTGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGGAGACGATGTTGAATCAGAAAGTCTGT
1 TGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
**
271331 CTGCC-GGTGAAAAACCATATGATGATGAGGGAGAGAAGCCGAAAA-ATAGATTACTAGAAGACG
66 CT-CCTGGTGAAAAACCATATGATGATGAGGGAGAGAAGTTGAAAAGA-AGATTACTAGAAGACG
* * * *
271394 GTGTTGAATCTA-AAAGTCCGTCCACCAGTGAAAACCTATCGGATGATGGGGGAGAGAAGCAGAA
129 ATATTGAATC-AGAAAGTCCGTCCGCCAGTGAAAACC-ATCGGATGATGGGGGAGAGAAGCCGAA
* **
271458 AAGAAGATTACTAGAAGACAATGTTGAATCAGAAAGTTCGTCTTTCGGTGAAAAC-CTATC
192 AAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTC-ATC
* * *
271518 AGATGATGAGGGAGAGAAGCCGAAAAAGAGATTATTAGAAGACGATGTTGAATCAGAAAGTCCAT
1 TGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
271583 C
66 C
271584 CGCTGATACA
Statistics
Matches: 683, Mismatches: 116, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
251 20 0.03
252 647 0.95
253 16 0.02
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (251 bp):
TGATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
CTCCTGGTGAAAAACCATATGATGATGAGGGAGAGAAGTTGAAAAGAAGATTACTAGAAGACGAT
ATTGAATCAGAAAGTCCGTCCGCCAGTGAAAACCATCGGATGATGGGGGAGAGAAGCCGAAAAGA
AGATTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTCATC
Found at i:271599 original size:252 final size:249
Alignment explanation
Indices: 270511--271710 Score: 1083
Period size: 252 Copynumber: 4.8 Consensus size: 249
270501 AAGTTCACAT
* ** * * * * * * * *
270511 GATGATGAGGGAGAGAAACCGGCAAGAAGATTACTGGGAGACAACGTTGAAGCAGAAAGTTCATA
1 GATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCATC
* * * * * * * * * *
270576 CGATGGTGAAAAATCA-CATGATGTTGAGGGAGAGAAGCCAGGAAGAAGATTATTGGAAGACAAT
66 CGCTGATGAAAAACCATC-TGATGATAAGGGAGAGAAGCC-GAAAAAAGATTACTAGAAGACGAT
* * * ** * *
270640 GATGAATCAGAAAGTCGGTCTGCTGGGGATAAACC-ATCGGATGATGAGGGAGAGAAGCCGAAAA
129 GTTGAATCAGAAAGTC-CTCCGCCAGTGA-AAACCTATCGGATGATGGGGGAGAGAAG-CGAAAA
* * * *
270704 GGAGATTACTAGAAGACGGTGTTGAAGT-AGAAAGTTCGTCTACCGGTGAAAACTCATCT
191 GAAGATTACTAGAAGACGATGTTGAA-TCAGAAAGTTCGTCTGCCGGTGAAAACTCATCA
* * * * *
270763 GATGATG-GGAGGGAGAAGCCTAAAAGGAGATTACTAGAAGACAATGATGAATCAGAAAGTTCAT
1 GATGATGAGG-GAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
*** * * * * ** *
270827 CTTTTGGTGAAAACCCATCTAATGATAAGGGAAAGAAGTTGAAAAGAAGATTAGTAGAAGACGAT
65 CCGCTGATGAAAAACCATCTGATGATAAGGGAGAGAAGCCGAAAA-AAGATTACTAGAAGACGAT
* * * * * ** *
270892 ATTGAATCAGAAAGTTCACCTGCCGGTGAAAACCCATTAGATGATGGGGGAGAGAAGTTGAAAAG
129 GTTGAATCAGAAAGTCCTCC-GCCAGTGAAAACCTATCGGATGATGGGGGAGAGAAG-CGAAAAG
* * *
270957 AAGATTACTAGAAGACGATGTTGAATCAGAAAG-TCTGTCTGCCGATGAAAACCCATCG
192 AAGATTACTAGAAGACGATGTTGAATCAGAAAGTTC-GTCTGCCGGTGAAAACTCATCA
*
271015 GATGATGAGGAAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCATC
1 GATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCATC
* * * ***
271080 CCCTGAT-ACAAAACCATTTGATGATGAGGGAGAGAAGTATAAAAAAAGATTACTA-AGAGACGA
66 CGCTGATGA-AAAACCATCTGATGATAAGGGAGAGAAG-CCGAAAAAAGATTACTAGA-AGACGA
* * * *
271143 TGTTGAATCAGAAAGCCCTTCCGTCAGTGAAAAATCATAT--GATGATGGGGAAGAGAAGTCGAA
128 TGTTGAATCAGAAAGTCC-TCCGCCAGTG-AAAA-CCTATCGGATGATGGGGGAGAGAAG-CGAA
* * * * *
271206 AAGAAGATTATTAGAAGACGACGTTGAATCAGAAAGTCCTTCTGTCGGTGAAAACTCAT-A
189 AAGAAGATTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTCATCA
* * **
271266 TGGTGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGGAGACGATGTTGAATCAGAAAGTCTGT
1 -GATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCAT
* * * * * *
271331 CTGCCGGTGAAAAACCATATGATGATGAGGGAGAGAAGCCGAAAAATAGATTACTAGAAGACGGT
65 CCGCTGATGAAAAACCATCTGATGATAAGGGAGAGAAGCCGAAAAA-AGATTACTAGAAGACGAT
*
271396 GTTGAATCTA-AAAGTCCGTCCACCAGTGAAAACCTATCGGATGATGGGGGAGAGAAGCAGAAAA
129 GTTGAATC-AGAAAGTCC-TCCGCCAGTGAAAACCTATCGGATGATGGGGGAGAGAAGC-GAAAA
* **
271460 GAAGATTACTAGAAGACAATGTTGAATCAGAAAGTTCGTCTTTCGGTGAAAAC-CTATCA
191 GAAGATTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTC-ATCA
* *
271519 GATGATGAGGGAGAGAAGCCGAAAAAGAGATTATTAGAAGACGATGTTGAATCAGAAAGTCCATC
1 GATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCATC
* ** *
271584 CGCTGAT-ACAAAACCATCTGATGACAAGAAAGAGAAGCCG-----A-A-TACTAGACGACGATG
66 CGCTGATGA-AAAACCATCTGATGATAAGGGAGAGAAGCCGAAAAAAGATTACTAGAAGACGATG
** * * ** ** *
271641 TTGAATCAGAAAGTTGTCTGCCGGTGAAAAGCC-ATTTGATGATGATGGAGAGAAGCCAAAAAGA
130 TTGAATCAGAAAGTCCTCCGCCAGTGAAAA-CCTATCGGATGATGGGGGAGAGAAG-CGAAAAGA
271705 AGATTA
193 AGATTA
271711 TTGGAAAATG
Statistics
Matches: 784, Mismatches: 135, Indels: 67
0.80 0.14 0.07
Matches are distributed among these distances:
243 42 0.05
244 28 0.04
245 1 0.00
246 1 0.00
250 4 0.01
251 28 0.04
252 658 0.84
253 19 0.02
254 3 0.00
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (249 bp):
GATGATGAGGGAGAGAAGCCGAAAAGGAGATTACTAGAAGACGATGTTGAATCAGAAAGTCCATC
CGCTGATGAAAAACCATCTGATGATAAGGGAGAGAAGCCGAAAAAAGATTACTAGAAGACGATGT
TGAATCAGAAAGTCCTCCGCCAGTGAAAACCTATCGGATGATGGGGGAGAGAAGCGAAAAGAAGA
TTACTAGAAGACGATGTTGAATCAGAAAGTTCGTCTGCCGGTGAAAACTCATCA
Found at i:271894 original size:189 final size:187
Alignment explanation
Indices: 271638--272170 Score: 619
Period size: 189 Copynumber: 2.8 Consensus size: 187
271628 CTAGACGACG
* * * *
271638 ATGTTGAATCAGAAAGTT-GTCTGCCGGTGAAAAGCCATTTGATGATGATGGAGAGAAGCCAAAA
1 ATGTTGAATCAGAAAGTTCGTCTACCGGTGAAAA-CCATCTGATGATGAGGGAGAGAAGCCGAAA
*
271702 AGAAGATTATTGGAAAATGACATTGAAGCAAAAAGTCCTGATGTTGAGGAAGAAAGCCCGTTCGC
65 AGAAGATTATTGG-AGATGACATTGAAGCAAAAAGTCCTGATGTTGAGGAAGAAAGCCCGTTCGC
* * *
271767 TGGTGAAAAACCATCTATTATTGATGGAGAG-AAGTCGCGAAGAAGGTTACTAGAAGATA
129 TGGTGAAAAACCACCTATTATTGATGGAGAGAAACT-GAGAAGAAGGTTACTAGAAGATA
* * * * *
271826 ATGTTAAATCAGAAAGTTCATCCACCGGTGACAAACCATGTGATGATG-GGGTAGAGAAGTCGAA
1 ATGTTGAATCAGAAAGTTCGTCTACCGGTGA-AAACCATCTGATGATGAGGG-AGAGAAGCCGAA
* * * * * *
271890 AAGAATACTACTTGGAGATGACCTTGAAGGAAAAAGTCCTGATGTCGAGGAAGAAAGTCCGTTCG
64 AAGAAGATTA-TTGGAGATGACATTGAAGCAAAAAGTCCTGATGTTGAGGAAGAAAGCCCGTTCG
* *
271955 TTGGTGAAAAACCACCTATTATTGATGGAGAGAAACTGAGAAGAAGGTTACTAGAAGTTA
128 CTGGTGAAAAACCACCTATTATTGATGGAGAGAAACTGAGAAGAAGGTTACTAGAAGATA
* * * **
272015 ATGTTGAATCAAAAAG-TCTGTCTACAGATGAAAAATTATCTGATGATGAGGGAGAGAAGCCGAA
1 ATGTTGAATCAGAAAGTTC-GTCTACCGGTG-AAAACCATCTGATGATGAGGGAGAGAAGCCGAA
* * * ** * *
272079 AAGAAGATTATTGGGAGACGACGTTGAAGCAAAAAGTCCTGATGTTAAATAAGAGAATCTC-TTC
64 AAGAAGATTATT-GGAGATGACATTGAAGCAAAAAGTCCTGATGTTGAGGAAGA-AAGCCCGTTC
*
272143 GCTGGTGAAAAATCACCTAATT-TTGATG
127 GCTGGTGAAAAACCACCT-ATTATTGATG
272171 TTTTGAATAA
Statistics
Matches: 290, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
188 23 0.08
189 247 0.85
190 20 0.07
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.24
Consensus pattern (187 bp):
ATGTTGAATCAGAAAGTTCGTCTACCGGTGAAAACCATCTGATGATGAGGGAGAGAAGCCGAAAA
GAAGATTATTGGAGATGACATTGAAGCAAAAAGTCCTGATGTTGAGGAAGAAAGCCCGTTCGCTG
GTGAAAAACCACCTATTATTGATGGAGAGAAACTGAGAAGAAGGTTACTAGAAGATA
Done.