Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008092.1 Hibiscus syriacus cultivar Beakdansim tig00110607_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2324158
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 12
Found at i:703373 original size:12 final size:12
Alignment explanation
Indices: 703356--703381 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
703346 TGAGTTTTAG
703356 TGGGTGATGAAA
1 TGGGTGATGAAA
703368 TGGGTGATGAAA
1 TGGGTGATGAAA
703380 TG
1 TG
703382 ATGAACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.27
Consensus pattern (12 bp):
TGGGTGATGAAA
Found at i:705430 original size:41 final size:40
Alignment explanation
Indices: 705385--705505 Score: 109
Period size: 42 Copynumber: 2.9 Consensus size: 40
705375 TTTACCGCTC
*
705385 TATTGCGGCGTTTTGACTCAATCGCCGCAAAATTTATACTA
1 TATTGCGGCGTTTTG-CTAAATCGCCGCAAAATTTATACTA
* * * * * * *
705426 TATTGTGGCGTTTGTGGTAAAAACGCTGC-CAGTTTACCACTA
1 TATTGCGGCGTTT-TGCT-AAATCGCCGCAAAATTTA-TACTA
*
705468 TATTGCAGCGTTTTGGCTAAATCGCCGCAAAATTTATA
1 TATTGCGGCGTTTT-GCTAAATCGCCGCAAAATTTATA
705506 ATCTATTGAA
Statistics
Matches: 59, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
41 28 0.47
42 31 0.53
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (40 bp):
TATTGCGGCGTTTTGCTAAATCGCCGCAAAATTTATACTA
Found at i:705462 original size:83 final size:82
Alignment explanation
Indices: 705338--705564 Score: 256
Period size: 83 Copynumber: 2.7 Consensus size: 82
705328 ACTATATGTG
* * * * *
705338 TAATATATTGCGGCGTTTTTTGTCAAAACGCCGCCCATTTACCGCTCTATTGCGGCGTTTTGACT
1 TAATATATTGAGGCGTTTGTGGTAAAAACGCCG-CCATTTACCACTCTATTGCGGCGTTTTGACT
*
705403 CAATCGCCGCAAAATTTA
65 AAATCGCCGCAAAATTTA
* * * * * *
705421 TACTATATTGTGGCGTTTGTGGTAAAAACGCTGCCAGTTTACCACTATATTGCAGCGTTTTGGCT
1 TAATATATTGAGGCGTTTGTGGTAAAAACGCCGCCA-TTTACCACTCTATTGCGGCGTTTTGACT
705486 AAATCGCCGCAAAATTTA
65 AAATCGCCGCAAAATTTA
* * * * * * *
705504 TAATCTATTGAAGCGTTTGTGATATAAACGCCGCTAATTTAGCACCCTATTGCGGCGTTTT
1 TAATATATTGAGGCGTTTGTGGTAAAAACGCCGC-CATTTACCACTCTATTGCGGCGTTTT
705565 TCTAAAAACG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
82 3 0.03
83 115 0.97
84 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (82 bp):
TAATATATTGAGGCGTTTGTGGTAAAAACGCCGCCATTTACCACTCTATTGCGGCGTTTTGACTA
AATCGCCGCAAAATTTA
Found at i:707238 original size:21 final size:21
Alignment explanation
Indices: 707212--707255 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
707202 CTAGAGAGCC
*
707212 AAATACTGAACGCAAAGTGAA
1 AAATACTAAACGCAAAGTGAA
*
707233 AAATACTAAACGTAAAGTGAA
1 AAATACTAAACGCAAAGTGAA
707254 AA
1 AA
707256 TGTAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.11, G:0.16, T:0.16
Consensus pattern (21 bp):
AAATACTAAACGCAAAGTGAA
Found at i:708434 original size:23 final size:22
Alignment explanation
Indices: 708408--708457 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
708398 ATTATAGATT
*
708408 TAAAATTTAAAATATACAAAAAA
1 TAAAATATAAAA-ATACAAAAAA
*
708431 T-AAATATAAAAATACTAAAAA
1 TAAAATATAAAAATACAAAAAA
708452 TGAAAA
1 T-AAAA
708458 CTAAATTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 10 0.43
22 9 0.39
23 4 0.17
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
TAAAATATAAAAATACAAAAAA
Found at i:708462 original size:22 final size:22
Alignment explanation
Indices: 708410--708452 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
708400 TATAGATTTA
*
708410 AAATTTAAAATATACAAAAAAT
1 AAATATAAAATATACAAAAAAT
*
708432 AAATATAAAA-ATACTAAAAAT
1 AAATATAAAATATACAAAAAAT
708453 GAAAACTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATATAAAATATACAAAAAAT
Found at i:713708 original size:18 final size:19
Alignment explanation
Indices: 713662--713708 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 19
713652 TTTAAAATTT
*
713662 AATTTTAGTTATCATAACCA
1 AATTTTAGTTATAATAA-CA
713682 ATTATTTTAGTTATAATAA-A
1 A--ATTTTAGTTATAATAACA
713702 AATTTTA
1 AATTTTA
713709 AATAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 6 0.25
20 3 0.12
22 15 0.62
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (19 bp):
AATTTTAGTTATAATAACA
Found at i:713777 original size:23 final size:22
Alignment explanation
Indices: 713751--713793 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
713741 ATGATAATTT
713751 ATTTAGACAAAATAACAAATTAA
1 ATTTAGACAAAATAA-AAATTAA
**
713774 ATTTAGTTAAAATAAAAATT
1 ATTTAGACAAAATAAAAATT
713794 TATGTCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (22 bp):
ATTTAGACAAAATAAAAATTAA
Found at i:713963 original size:22 final size:21
Alignment explanation
Indices: 713938--713991 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
713928 ATAATCAATT
713938 ATAACAAGTTTATTTAGTCAAA
1 ATAACAA-TTTATTTAGTCAAA
*
713960 ATAACATATTAAATTTAGTCAAA
1 ATAACA-ATT-TATTTAGTCAAA
713983 ATAA-AATTT
1 ATAACAATTT
713992 TATGTTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 9 0.32
23 16 0.57
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (21 bp):
ATAACAATTTATTTAGTCAAA
Found at i:714334 original size:33 final size:33
Alignment explanation
Indices: 714240--714375 Score: 100
Period size: 33 Copynumber: 4.2 Consensus size: 33
714230 TTCGTCCCAA
* * *
714240 TATTTTATTAAAATGAAAAATTGTGACAAAT-T
1 TATTTAATCAAAATAAAAAATTGTGACAAATAT
* * *
714272 TATTTAATCAAAATAATAAATTATAACAAATAT
1 TATTTAATCAAAATAAAAAATTGTGACAAATAT
** *
714305 TAATTT-ATCATTATAAAAAATTGTGACAAATAA
1 T-ATTTAATCAAAATAAAAAATTGTGACAAATAT
* * * * *
714338 TATTCT-TTTACAATAACAAATTGTAACAAA-AT
1 TATT-TAATCAAAATAAAAAATTGTGACAAATAT
714370 TATTTA
1 TATTTA
714376 GTCACAGTAA
Statistics
Matches: 81, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
31 1 0.01
32 33 0.41
33 43 0.53
34 4 0.05
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (33 bp):
TATTTAATCAAAATAAAAAATTGTGACAAATAT
Found at i:714601 original size:17 final size:17
Alignment explanation
Indices: 714579--714621 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
714569 TACATTTAGT
* *
714579 GACAAAATAGTATCTGC
1 GACAAAATAGCATATGC
714596 GACAAAATAGCATATGC
1 GACAAAATAGCATATGC
714613 GACAAAATA
1 GACAAAATA
714622 ATTATTGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (17 bp):
GACAAAATAGCATATGC
Found at i:717871 original size:21 final size:21
Alignment explanation
Indices: 717793--717877 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
717783 TAAATATTTG
*
717793 GTAGAGGGAATCGATACCCCC-
1 GTAG-GGGAACCGATACCCCCT
* * *
717814 ATAAGGGAACCGATTCCCCCTTT
1 GTAGGGGAACCGATACCCCC--T
* * *
717837 GAATGGGAACCGATTCCCCCT
1 GTAGGGGAACCGATACCCCCT
*
717858 GTAGGGGAATCGATACCCCC
1 GTAGGGGAACCGATACCCCC
717878 ATGGGGTTCT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 14 0.28
21 19 0.38
23 17 0.34
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (21 bp):
GTAGGGGAACCGATACCCCCT
Found at i:731050 original size:20 final size:20
Alignment explanation
Indices: 731021--731059 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
731011 TATAGGTTCA
* *
731021 AATATTGATACTTGATGAAC
1 AATATCGATACTAGATGAAC
731041 AATATCGATACTAGATGAA
1 AATATCGATACTAGATGAA
731060 TTCAGTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (20 bp):
AATATCGATACTAGATGAAC
Found at i:731115 original size:20 final size:19
Alignment explanation
Indices: 731086--731124 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
731076 GGATTTCAGG
731086 TAGGGAGTATCAATACTGC
1 TAGGGAGTATCAATACTGC
*
731105 TAGGAGAGTATCGATACTGC
1 TAGG-GAGTATCAATACTGC
731125 CCCTATAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (19 bp):
TAGGGAGTATCAATACTGC
Found at i:732366 original size:32 final size:32
Alignment explanation
Indices: 732320--732403 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
732310 TACTGGTAAA
* ** *
732320 TATTACATTCAGATAATGCCCATTAAAGTCAG
1 TATTGCATTCAGATAATGCAAAATAAAGTCAG
**
732352 TATTGCATTCAGATAATGCAAAATGGAGTCAG
1 TATTGCATTCAGATAATGCAAAATAAAGTCAG
*
732384 TGTTGCATTCAGATAATGCA
1 TATTGCATTCAGATAATGCA
732404 CAAGAGTGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
TATTGCATTCAGATAATGCAAAATAAAGTCAG
Found at i:733301 original size:3 final size:3
Alignment explanation
Indices: 733293--733352 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
733283 GTTTTAATCA
733293 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
733341 ATT ATT ATT ATT
1 ATT ATT ATT ATT
733353 CACTCATGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:733528 original size:18 final size:18
Alignment explanation
Indices: 733505--733549 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
733495 AGGTATCTCA
733505 TCTTCATTTGTATCCACT
1 TCTTCATTTGTATCCACT
733523 TCTTCATTTGTATCCACT
1 TCTTCATTTGTATCCACT
733541 TCTTCATTT
1 TCTTCATTT
733550 TGAGAAATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.16, C:0.27, G:0.04, T:0.53
Consensus pattern (18 bp):
TCTTCATTTGTATCCACT
Found at i:733542 original size:15 final size:16
Alignment explanation
Indices: 733497--733549 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 16
733487 TATAATAGAG
733497 GTATCTCATCTTCATTT
1 GTATC-CATCTTCATTT
733514 GTATCCACTTCTTCATTT
1 GTATCCA--TCTTCATTT
733532 GTATCCACTTCTTCATTT
1 GTATCCA--TCTTCATTT
733550 TGAGAAATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.06
17 5 0.15
18 27 0.79
ACGTcount: A:0.17, C:0.26, G:0.06, T:0.51
Consensus pattern (16 bp):
GTATCCATCTTCATTT
Found at i:737673 original size:20 final size:20
Alignment explanation
Indices: 737646--737691 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
737636 TGCTGGTGCT
*
737646 GATACTG-ACCCTTTAGTATC
1 GATACTGAACCC-TGAGTATC
*
737666 GGTACTGAACCCTGAGTATC
1 GATACTGAACCCTGAGTATC
737686 GATACT
1 GATACT
737692 CACCTCTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (20 bp):
GATACTGAACCCTGAGTATC
Found at i:738653 original size:7 final size:8
Alignment explanation
Indices: 738640--738692 Score: 54
Period size: 8 Copynumber: 6.2 Consensus size: 8
738630 TTGGTTCTTG
738640 GAGATGAA
1 GAGATGAA
738648 GA-ATGAA
1 GAGATGAA
738655 GAGATGAA
1 GAGATGAA
*
738663 GGAGAATCAA
1 -GAG-ATGAA
738673 GAGATGAA
1 GAGATGAA
738681 GGAGAATGAA
1 -GAG-ATGAA
738691 GA
1 GA
738693 AGACAAGGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
7 7 0.18
8 11 0.29
9 11 0.29
10 9 0.24
ACGTcount: A:0.51, C:0.02, G:0.36, T:0.11
Consensus pattern (8 bp):
GAGATGAA
Found at i:738700 original size:18 final size:18
Alignment explanation
Indices: 738647--738692 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
738637 TTGGAGATGA
738647 AGAATGAAGAGATGAAGG
1 AGAATGAAGAGATGAAGG
*
738665 AGAATCAAGAGATGAAGG
1 AGAATGAAGAGATGAAGG
738683 AGAATGAAGA
1 AGAATGAAGA
738693 AGACAAGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.35, T:0.11
Consensus pattern (18 bp):
AGAATGAAGAGATGAAGG
Found at i:746432 original size:23 final size:20
Alignment explanation
Indices: 746374--746435 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 20
746364 AGAACCCGTG
746374 GGGGGTATCGATTCCCTCAA
1 GGGGGTATCGATTCCCTCAA
* *
746394 GGAGGGAATC-AGTTCCTATTCAAA
1 GG-GGGTATCGA-TTCC--CTC-AA
746418 GGGGGTATCGATTCCCTC
1 GGGGGTATCGATTCCCTC
746436 TGTACTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
20 3 0.09
21 12 0.38
23 12 0.38
24 5 0.16
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (20 bp):
GGGGGTATCGATTCCCTCAA
Found at i:747663 original size:17 final size:17
Alignment explanation
Indices: 747641--747680 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
747631 TATCATCAAC
*
747641 ATAAATTTAAACTATTA
1 ATAAATTTAAACTACTA
*
747658 ATAAATTTGAACTACTA
1 ATAAATTTAAACTACTA
747675 ATAAAT
1 ATAAAT
747681 CTTTACCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (17 bp):
ATAAATTTAAACTACTA
Found at i:754049 original size:19 final size:19
Alignment explanation
Indices: 754025--754073 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
754015 TGTTATGAGA
754025 ATGTTTGAATTGGTTTATC
1 ATGTTTGAATTGGTTTATC
754044 ATGTTTGAATTGGTTTATC
1 ATGTTTGAATTGGTTTATC
754063 ATGTTTGAATT
1 ATGTTTGAATT
754074 TAGGATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.22, C:0.04, G:0.20, T:0.53
Consensus pattern (19 bp):
ATGTTTGAATTGGTTTATC
Found at i:756085 original size:5 final size:5
Alignment explanation
Indices: 756075--756951 Score: 1307
Period size: 5 Copynumber: 181.6 Consensus size: 5
756065 ATTTATTTCA
756075 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAAT ATAAT AT-AT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT
756125 ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756173 ATAAT ATAAT ATAAT ATAAT A-AAT AT-AT AT-AT ATAAT ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756219 ATAA- ATAAT A-AAT ATAAT AT-A- ATAAT ATAAT ATAAT AT-AT ATAA-
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756263 ATAAT ATAAT ATAAT ATAAT A-AAT ATAA- ATAAT AT-AT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756310 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATAAT AT-A- ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756357 ATAAT AT-AT ATAAT AT-AT ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756404 ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT ATATAT ATAAT AT-AT ATAA-
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT
* * *
756452 AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT -GAAT AT-AT GTAAT GTAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* *
756499 GTAAT ATAAT GTAAT AT-AT AT-AT ATAAAT ATAAT ATAAT ATAAT AT-A-
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT
756546 ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATAAT AT-AT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756594 AT-AT ATAAT ATAAT ATAAT ATAAT -TAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756642 ATAAT ATAAT ATAAT ATAATAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756694 AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAATAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT
756745 ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT AATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT
*
756795 ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATTA- ATAA- ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756842 ATAAT ATAAT ATAAT ATAAAT AATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT AT-AAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756894 AATAAT ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
756944 ATAAT ATA
1 ATAAT ATA
756952 TGGTATGTGT
Statistics
Matches: 815, Mismatches: 7, Indels: 100
0.88 0.01 0.11
Matches are distributed among these distances:
3 7 0.01
4 141 0.17
5 626 0.77
6 31 0.04
7 10 0.01
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:764032 original size:21 final size:22
Alignment explanation
Indices: 764006--764047 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
763996 GGTGAAAAAA
764006 CCGGATCAG-TTTTTATCCGAT
1 CCGGATCAGTTTTTTATCCGAT
*
764027 CCGGATCGGTTTTTTATCCGA
1 CCGGATCAGTTTTTTATCCGA
764048 CTTTGTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (22 bp):
CCGGATCAGTTTTTTATCCGAT
Found at i:766005 original size:15 final size:15
Alignment explanation
Indices: 765985--766054 Score: 104
Period size: 15 Copynumber: 4.7 Consensus size: 15
765975 ATTTTATTAT
765985 TATGTGAATATGTTC
1 TATGTGAATATGTTC
*
766000 TATGTGAAAATGTTC
1 TATGTGAATATGTTC
*
766015 TATGTAAATATGTTC
1 TATGTGAATATGTTC
* *
766030 TATGTGATTATGGTC
1 TATGTGAATATGTTC
766045 TATGTGAATA
1 TATGTGAATA
766055 AATGATACTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (15 bp):
TATGTGAATATGTTC
Found at i:766238 original size:24 final size:24
Alignment explanation
Indices: 766188--766238 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
766178 AATCTATGTA
* ** *
766188 GCACTTCGGTGCATATTCTTTGTG
1 GCACTTCGGTGCAAATTCTACGCG
*
766212 GCACTTTGGTGCAAATTCTACGCG
1 GCACTTCGGTGCAAATTCTACGCG
766236 GCA
1 GCA
766239 GTTTCGACTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.33
Consensus pattern (24 bp):
GCACTTCGGTGCAAATTCTACGCG
Found at i:769242 original size:39 final size:36
Alignment explanation
Indices: 769183--769259 Score: 91
Period size: 39 Copynumber: 2.1 Consensus size: 36
769173 ATTTTTAGAA
* * *
769183 ATTTAAAATTTGAAGATATATTTAATTTATAATATTGTT
1 ATTTAAAATTTAAAAATATA-TTAATATAT-ATATT-TT
*
769222 ATTTCAAATTTAAAAATATATTAATATATATATTTT
1 ATTTAAAATTTAAAAATATATTAATATATATATTTT
769258 AT
1 AT
769260 AAATAAGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
36 4 0.12
37 5 0.15
38 8 0.24
39 17 0.50
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (36 bp):
ATTTAAAATTTAAAAATATATTAATATATATATTTT
Found at i:770923 original size:17 final size:17
Alignment explanation
Indices: 770865--770924 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
770855 GTTGAATAAG
*
770865 TTCTTCACATTATGAAC
1 TTCTTCTCATTATGAAC
*
770882 TTCTTCTTC-TTCA-GATGAG
1 TTCTTC-TCATT-ATGA--AC
770901 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
770918 TTCTTCT
1 TTCTTCT
770925 GAAAATGCTG
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
17 18 0.53
18 5 0.15
19 11 0.32
ACGTcount: A:0.20, C:0.23, G:0.08, T:0.48
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:771230 original size:112 final size:111
Alignment explanation
Indices: 771101--771848 Score: 851
Period size: 112 Copynumber: 6.7 Consensus size: 111
771091 ATAGAGTCAT
*
771101 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCGTCAGATGATAAGTTCTTCTCA
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAT-AGTTCTTCTCA
* *
771166 TTATGAACTTTCTCTGGAAAAGTTGATCAATCGAGTGATGAATTCAA
65 TTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
* *
771213 GCAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATCTTCAGATG--AGTTATTCT
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTC-T--TCTTCAGATGATAGTTCTTCT
* * * * *
771276 CATTATGAACTCTAC-CTGGCAATGTTGATCCATCGAGTGATGAATTCGA
63 CATTATGAACT-TTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
771325 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATG--AGTTCTTCT
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTC-T-T-CTTCTTCAGATGATAGTTCTTCT
* * *
771388 CATTATGAACTTCCTCTGGAAAAGTTAATCCATCAAGTGATGAATTCAG
63 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
* * *
771437 GCAAAAGGTTGAACAAATTTTTCTCATTATGAATTTCTTCTTCCTCTTCAGAT-A-AGTTCTTCT
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAA---CTTCTTCTTCTTCAGATGATAGTTCTTCT
* * *
771500 CATTATGAACTTTCTCTGGAAATGTTTATCCATCAAGTGATGAATTCGA
63 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
*
771549 GCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG--AGTTCTTC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAA---CTTCTT-CTTCTTCAGATGATAGTTCTTC
* ** * **
771612 CCATTATGAACACT-TCTGGAAATA-TTGATCCATCAAGTGATGGATTTGA
62 TCATTATGAACTTTCTCTGGAAA-AGTTGATCCATCAAGTGATGAATTCAA
771661 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCCTTCTTCAGATG--AGTTCTTC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAAC-T--TCTT-CTTCTTCAGATGATAGTTCTTC
* * * * ** *
771724 TCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAA
62 TCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
* * *
771774 GCAAAAGGTTGAATAAATTCTTCTAATTATGAACTTTTTCTTCCTTCTTCAGATG--AGTTCTTC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAAC---TTCTT-CTTCTTCAGATGATAGTTCTTC
771837 TCATTATGAACT
62 TCATTATGAACT
771849 CTACCTAGCA
Statistics
Matches: 561, Mismatches: 53, Indels: 43
0.85 0.08 0.07
Matches are distributed among these distances:
109 1 0.00
110 1 0.00
111 2 0.00
112 411 0.73
113 127 0.23
114 3 0.01
115 16 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (111 bp):
GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCAGATGATAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAA
Found at i:771396 original size:224 final size:225
Alignment explanation
Indices: 771101--771848 Score: 1076
Period size: 224 Copynumber: 3.3 Consensus size: 225
771091 ATAGAGTCAT
* ** *
771101 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CGTC-AGATGATAAGTTCTTCT
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA-GATGAGTTCTTCT
* * *
771164 CATTATGAACTTTCTCTGGAAAAGTTGATCAATCGAGTGATGAATTCAAGCAAAAGATTGAACAA
65 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAA
* *
771229 GTTCTTCTCATTATGAACTTCTTCTTCATCTTCAGATGAGTTATTCTCATTATGAACTCTAC-CT
130 GTTCTTCTCATTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCT
*
771293 GGCAATGTTGATCCATCGAGTGATGAATTCGA
194 GGCAATGTTAATCCATCGAGTGATGAATTCGA
771325 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTC-TCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
771389 ATTATGAACTTCCTCTGGAAAAGTTAATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAA
66 ATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAG
* * * *
771454 TTTTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
131 TTCTTCTCATTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * *
771519 AAATGTTTATCCATCAAGTGATGAATTCGA
196 CAATGTTAATCCATCGAGTGATGAATTCGA
* *
771549 GCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCCC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
** * **
771614 ATTATGAACACT-TCTGGAAATA-TTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAA
66 ATTATGAACTTTCTCTGGAAA-AGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAA
* *
771677 GTTCTTCTCATTATGAACTTCATCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCT
130 GTTCTTCTCATTATGAACTTCTTCTT-CATCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCT
* * **
771742 GGCAATGCTAATCCATCGGGTGATGAATTAAA
194 GGCAATGTTAATCCATCGAGTGATGAATTCGA
* * * *
771774 GCAAAAGGTTGAATAAATTCTTCTAATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
771839 ATTATGAACT
66 ATTATGAACT
771849 CTACCTAGCA
Statistics
Matches: 468, Mismatches: 50, Indels: 11
0.88 0.09 0.02
Matches are distributed among these distances:
223 3 0.01
224 302 0.65
225 163 0.35
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (225 bp):
GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAG
TTCTTCTCATTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
CAATGTTAATCCATCGAGTGATGAATTCGA
Found at i:771518 original size:336 final size:337
Alignment explanation
Indices: 771101--771848 Score: 1117
Period size: 336 Copynumber: 2.2 Consensus size: 337
771091 ATAGAGTCAT
* * * **
771101 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCGTC-AGATGATAAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCA-GATAAGTTCTTCTC
* *
771165 ATTATGAACTTTCTCTGGAAAAGTTGATCAATCGAGTGATGAATTCAAGCAAAAGATTGAACAAG
65 ATTATGAACTTTCTCTGGAAAAGTTGATCAATCAAGTGATGAATTCAAGCAAAAGATTAAACAAG
* *
771230 TTCTTCTCATTATGAACTTCTTCTT-CATCTTCAGATGAGTTATTCTCATTATGAACTCTACCTG
130 TTCTTCTCATTATGAACTTCTTCTTCCATCTTCAGATGAGTTATTCCCATTATGAACACT-CCTG
* * *
771294 GCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
194 GAAATATTGATCCATCAAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAAC
* *
771359 TTCTTC-TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGGAAAAGTTAATCCATCA
259 TTCATCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGGAAAAGCTAATCCATCA
* *
771423 AGTGATGAATTCAG
324 AGTGATGAATTAAA
*
771437 GCAAAAGGTTGAACAAATTTTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
* * * * *
771502 TTATGAACTTTCTCTGGAAATGTTTATCCATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAGT
66 TTATGAACTTTCTCTGGAAAAGTTGATCAATCAAGTGATGAATTCAAGCAAAAGATTAAACAAGT
* * *
771567 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCCCATTATGAACACTTCTGGA
131 TCTTCTCATTATGAACTTCTTCTTCCATCTTCAGATGAGTTATTCCCATTATGAACACTCCTGGA
* *
771632 AATATTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
196 AATATTGATCCATCAAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
* * * **
771697 CATCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGG
261 CATCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGGAAAAGCTAATCCATCAAG
771762 TGATGAATTAAA
326 TGATGAATTAAA
* * *
771774 GCAAAAGGTTGAATAAATTCTTCTAATTATGAACTTT-TTCTTCCTTCTTCAGATGAGTTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCC-TCTTCAGATAAGTTCTTCT
771838 CATTATGAACT
64 CATTATGAACT
771849 CTACCTAGCA
Statistics
Matches: 371, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
336 207 0.56
337 132 0.36
338 32 0.09
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (337 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
TTATGAACTTTCTCTGGAAAAGTTGATCAATCAAGTGATGAATTCAAGCAAAAGATTAAACAAGT
TCTTCTCATTATGAACTTCTTCTTCCATCTTCAGATGAGTTATTCCCATTATGAACACTCCTGGA
AATATTGATCCATCAAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
CATCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCCTCTGGAAAAGCTAATCCATCAAG
TGATGAATTAAA
Found at i:775565 original size:8 final size:8
Alignment explanation
Indices: 775552--775641 Score: 69
Period size: 8 Copynumber: 11.0 Consensus size: 8
775542 CTTGGTTCAA
775552 TTTTTTTC
1 TTTTTTTC
775560 TTTTTTTC
1 TTTTTTTC
775568 TTTTTTTTC
1 -TTTTTTTC
*
775577 CTTTTTTC
1 TTTTTTTC
775585 ATTTTTTT-
1 -TTTTTTTC
775593 TTCTTTTT-
1 TT-TTTTTC
*
775601 TTTCTTT-
1 TTTTTTTC
*
775608 TTTTTTCC
1 TTTTTTTC
* *
775616 TGTTTTCC
1 TTTTTTTC
775624 TTCTTTTTAC
1 TT-TTTTT-C
775634 TTTTTTTC
1 TTTTTTTC
775642 AAGTATAATA
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
7 11 0.16
8 31 0.46
9 23 0.34
10 3 0.04
ACGTcount: A:0.02, C:0.16, G:0.01, T:0.81
Consensus pattern (8 bp):
TTTTTTTC
Found at i:775575 original size:18 final size:18
Alignment explanation
Indices: 775552--775641 Score: 101
Period size: 19 Copynumber: 4.9 Consensus size: 18
775542 CTTGGTTCAA
775552 TTTTTTTCTTTTTTTC-T
1 TTTTTTTCTTTTTTTCTT
*
775569 TTTTTTTCCTTTTTTCATT
1 TTTTTTTCTTTTTTTC-TT
775588 TTTTTTTCTTTTTTTTCTT
1 TTTTTTTC-TTTTTTTCTT
* *
775607 TTTTTTTCCTGTTTTCCTT
1 TTTTTTT-CTTTTTTTCTT
* *
775626 CTTTTTACTTTTTTTC
1 TTTTTTTCTTTTTTTC
775642 AAGTATAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
17 15 0.25
18 7 0.11
19 31 0.51
20 8 0.13
ACGTcount: A:0.02, C:0.16, G:0.01, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTTTTTTTCTT
Found at i:775603 original size:38 final size:38
Alignment explanation
Indices: 775552--775640 Score: 128
Period size: 38 Copynumber: 2.4 Consensus size: 38
775542 CTTGGTTCAA
*
775552 TTTTTTTC-TTTTTTTC-TTTTTTTTCCTTTTTTCATT
1 TTTTTTTCTTTTTTTTCTTTTTTTTTCCTGTTTTCATT
*
775588 TTTTTTTCTTTTTTTTCTTTTTTTTTCCTGTTTTCCTT
1 TTTTTTTCTTTTTTTTCTTTTTTTTTCCTGTTTTCATT
* *
775626 CTTTTTACTTTTTTT
1 TTTTTTTCTTTTTTT
775641 CAAGTATAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
36 8 0.17
37 8 0.17
38 31 0.66
ACGTcount: A:0.02, C:0.15, G:0.01, T:0.82
Consensus pattern (38 bp):
TTTTTTTCTTTTTTTTCTTTTTTTTTCCTGTTTTCATT
Found at i:775631 original size:1 final size:1
Alignment explanation
Indices: 775552--775613 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
775542 CTTGGTTCAA
* * ** ** * *
775552 TTTTTTTCTTTTTTTCTTTTTTTTCCTTTTTTCATTTTTTTTTCTTTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
775614 CCTGTTTTCC
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:776096 original size:165 final size:165
Alignment explanation
Indices: 775834--776130 Score: 461
Period size: 165 Copynumber: 1.8 Consensus size: 165
775824 TAGATCGCTC
** *
775834 TCTTGGAACTCTCTCAGATGTACTTTCTTGTTGTGATCTTTCATCATCCACTTCTGATACATCTG
1 TCTTGGAACTCTCTCAGATGTACTTTCTTGTCATGATCATTCATCATCCACTTCTGATACATCTG
775899 CCCATGGCAAATAGCTTTCAATACATTCTCATCAATAAAGCTTAATTGATCAAATCAAGCTTGGA
66 CCCATGGCAAATAGCTTTCAATACATTCTCATCAATAAAGCTTAATTGATCAAATCAAGCTTGGA
775964 TCTATTCAGTCTCCTTTTTTAGCACTAGATCAACA
131 TCTATTCAGTCTCCTTTTTTAGCACTAGATCAACA
** ** * *
775999 TCTTGGAACTCTCTTGGATGTACTTTCTTGTCATGATCATTCATCATCCGTTTTTGATATATCTG
1 TCTTGGAACTCTCTCAGATGTACTTTCTTGTCATGATCATTCATCATCCACTTCTGATACATCTG
* * * *
776064 CCCATGGCAAATAGCTTTCAATCTCA-TCTCATCAATAAGGTTTAATTGATCAAATCGAGCTTGG
66 CCCATGGCAAATAGCTTTCAAT-ACATTCTCATCAATAAAGCTTAATTGATCAAATCAAGCTTGG
776128 ATC
130 ATC
776131 CCTTCAGTAT
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
165 116 0.98
166 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (165 bp):
TCTTGGAACTCTCTCAGATGTACTTTCTTGTCATGATCATTCATCATCCACTTCTGATACATCTG
CCCATGGCAAATAGCTTTCAATACATTCTCATCAATAAAGCTTAATTGATCAAATCAAGCTTGGA
TCTATTCAGTCTCCTTTTTTAGCACTAGATCAACA
Found at i:779305 original size:14 final size:14
Alignment explanation
Indices: 779286--779324 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
779276 ACAAAGATTA
779286 CAAATGTAAATATG
1 CAAATGTAAATATG
*
779300 CAAATGTAAAAATG
1 CAAATGTAAATATG
* *
779314 TAAATATAAAT
1 CAAATGTAAAT
779325 TATTTAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.28
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:779647 original size:43 final size:44
Alignment explanation
Indices: 779575--779659 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 44
779565 GTGCATCAAA
* *
779575 CAAAACTTTTACATATAGGGGACATCTTTCAGTCCTAACTTCAG
1 CAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTCAG
* * *
779619 CAAAAC-TTTACATATAGTGGATAACTTTCCCTCCTAACTTC
1 CAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTC
779660 TCTAAATCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 30 0.83
44 6 0.17
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.33
Consensus pattern (44 bp):
CAAAACTTTTACATATAGGGGACAACTTTCACTCCTAACTTCAG
Found at i:781053 original size:20 final size:20
Alignment explanation
Indices: 781025--781070 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
781015 ATAAATAATG
781025 AAATAAAATATT-TGAAAATA
1 AAATAAAATATTAT-AAAATA
*
781045 AAATGAAATATTAATAAAATA
1 AAATAAAATATT-ATAAAATA
781066 AAATA
1 AAATA
781071 CATAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 11 0.50
21 10 0.45
22 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
AAATAAAATATTATAAAATA
Found at i:781082 original size:17 final size:19
Alignment explanation
Indices: 781060--781098 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
781050 AAATATTAAT
781060 AAAATAA-AA-TACATAAA
1 AAAATAATAAGTACATAAA
*
781077 AAAATAATAAGTATATAAA
1 AAAATAATAAGTACATAAA
781096 AAA
1 AAA
781099 TTTTGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 10 0.53
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (19 bp):
AAAATAATAAGTACATAAA
Found at i:782233 original size:20 final size:21
Alignment explanation
Indices: 782208--782259 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
782198 TTTTCCCAAT
*
782208 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
782228 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
782249 TCGCAATGCGA
1 TCGCAATGCGA
782260 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:782273 original size:20 final size:20
Alignment explanation
Indices: 782248--782362 Score: 115
Period size: 20 Copynumber: 5.7 Consensus size: 20
782238 AATTGGGAAA
*
782248 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
782268 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
782288 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
782309 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
782329 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
782349 TTCGCAACGCGATA
1 ATCGCAACGCGATA
782363 ATACATAATC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:782292 original size:61 final size:61
Alignment explanation
Indices: 782245--782376 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 61
782235 GCGAATTGGG
* * * * *
782245 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
782306 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
782367 ATAATCGCAA
1 AAAATCGCAA
782377 TGCATTTTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:782882 original size:20 final size:20
Alignment explanation
Indices: 782857--782894 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
782847 CGATTCTCTC
782857 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
782877 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
782895 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:783085 original size:25 final size:24
Alignment explanation
Indices: 783031--783085 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
783021 TGTTTATTAT
* *
783031 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
783055 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
783081 TGTTT
1 TGTTT
783086 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:784259 original size:18 final size:18
Alignment explanation
Indices: 784214--784261 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
784204 TCCACTTCGG
* *
784214 GAGCCATCACCTCGCCCA
1 GAGCCATCATCTCACCCA
784232 GAGCCATCATCTCACCCA
1 GAGCCATCATCTCACCCA
784250 GAGCCATCATCT
1 GAGCCATCATCT
784262 GATCGACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.25, C:0.44, G:0.15, T:0.17
Consensus pattern (18 bp):
GAGCCATCATCTCACCCA
Found at i:784788 original size:19 final size:20
Alignment explanation
Indices: 784734--784800 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
784724 TAGTTTACTT
* *
784734 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
784754 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
784774 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
784793 TCGCAACG
1 TCGCAACG
784801 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:784808 original size:14 final size:14
Alignment explanation
Indices: 784789--784846 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
784779 ATGCGAAATG
784789 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
784803 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
784819 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
784835 AAAATCGCAACG
1 AAAATCGCAACG
784847 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:784831 original size:32 final size:33
Alignment explanation
Indices: 784773--784863 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
784763 GGAAATGGCT
784773 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
784806 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
784838 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
784864 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:784899 original size:14 final size:14
Alignment explanation
Indices: 784880--784937 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
784870 TTGTGTTTCA
784880 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
784894 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
784910 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
784926 CGTTGCGATTTT
1 CGTTGCGATTTT
784938 TATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:784948 original size:33 final size:33
Alignment explanation
Indices: 784882--784986 Score: 167
Period size: 33 Copynumber: 3.2 Consensus size: 33
784872 GTGTTTCACG
784882 TTGCGATTTTGTCGTTGCGA-TTTCATTTCGCA
1 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
*
784914 TTGCGATTTTGTCGTTGCGATTTTTATTTCGCA
1 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
** *
784947 TTGTAATTTTTTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
784980 TTGCGAT
1 TTGCGAT
784987 AGCCATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 20 0.31
33 45 0.69
ACGTcount: A:0.13, C:0.16, G:0.20, T:0.50
Consensus pattern (33 bp):
TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
Found at i:784985 original size:19 final size:18
Alignment explanation
Indices: 784896--784986 Score: 72
Period size: 17 Copynumber: 5.4 Consensus size: 18
784886 GATTTTGTCG
*
784896 TTGCGATTTCATTTCGCA
1 TTGCGATTTTATTTCGCA
*
784914 TTGCGA-TTT-TGTCG--
1 TTGCGATTTTATTTCGCA
784928 TTGCGATTTTTATTTCGCA
1 TTGCGA-TTTTATTTCGCA
* *
784947 TTG-TAATTT-TTTCG--
1 TTGCGATTTTATTTCGCA
784961 TTGCGATTTTCATTTCGCA
1 TTGCGATTTT-ATTTCGCA
784980 TTGCGAT
1 TTGCGAT
784987 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 7, Indels: 19
0.68 0.09 0.23
Matches are distributed among these distances:
14 9 0.16
15 4 0.07
16 12 0.21
17 14 0.25
18 7 0.12
19 10 0.18
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (18 bp):
TTGCGATTTTATTTCGCA
Found at i:785005 original size:20 final size:19
Alignment explanation
Indices: 784971--785022 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
784961 TTGCGATTTT
*
784971 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
784990 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
785010 CATTTTCGCGTTG
1 CA-TTTCGCGTTG
785023 TGATTTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 5 0.17
20 21 0.72
21 3 0.10
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:785463 original size:42 final size:42
Alignment explanation
Indices: 785388--785468 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
785378 GCCCGACTCA
*
785388 CCTATCATCCCTCAAGAGTCCCCTCCAATCATTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCCCTCCAACCATTCAAGAGGCC
* * *
785430 CCTATCCTCCCTCAAGAGGT-CCCTCCCACCATTCCAGAG
1 CCTATCATCCCTCAAGA-GTCCCCTCCAACCATTCAAGAG
785469 TCCGATTCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.23, C:0.43, G:0.12, T:0.21
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCCCTCCAACCATTCAAGAGGCC
Found at i:786438 original size:19 final size:19
Alignment explanation
Indices: 786410--786454 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
786400 CCAGAGGGGA
*
786410 TTGTGGTCCTCTCGTATGC
1 TTGTGCTCCTCTCGTATGC
786429 TTGTGCTCCTCTCGTATGC
1 TTGTGCTCCTCTCGTATGC
786448 TTGTGCT
1 TTGTGCT
786455 TGGCGCGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.04, C:0.27, G:0.24, T:0.44
Consensus pattern (19 bp):
TTGTGCTCCTCTCGTATGC
Found at i:786889 original size:14 final size:14
Alignment explanation
Indices: 786870--786905 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
786860 ATTGTTTAAT
786870 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
786884 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
786898 TGATTTGT
1 TGATTTGT
786906 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:787066 original size:19 final size:19
Alignment explanation
Indices: 787042--787109 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
787032 ATCGCAACGA
787042 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
787061 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
787080 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
787094 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
787110 TTTTCATTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.24
15 1 0.02
16 2 0.04
17 2 0.04
19 30 0.65
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:787153 original size:20 final size:20
Alignment explanation
Indices: 787136--787223 Score: 115
Period size: 20 Copynumber: 4.4 Consensus size: 20
787126 CGATTTTCTA
787136 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
*** *
787156 GTTGCGATTTTTCA-TTTCGA
1 GTTGCGA-TAGCCATTTTCGC
*
787176 ATTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
787196 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
787216 GTTGCGAT
1 GTTGCGAT
787224 TTCCCCGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 3 0.05
20 50 0.89
21 3 0.05
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:787161 original size:34 final size:36
Alignment explanation
Indices: 787116--787203 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 36
787106 GCGATTTTCA
* *
787116 TTTCGCATTGCGATTTTC-T-AGTTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
787150 TTTCGCGTTGCGATTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC--TTC-AATTGCGATAGCCAT
787190 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
787204 AGCCATTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 12 0.26
35 5 0.11
38 1 0.02
39 1 0.02
40 27 0.59
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (36 bp):
TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
Found at i:787443 original size:20 final size:20
Alignment explanation
Indices: 787418--787509 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
787408 TTGAAGATGA
787418 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
787438 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
* **
787458 TTGCGATTTTGTATTATCTCG
1 TTGCGATTTT-CAGAATCTCG
** * * *
787479 TTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCAGAATCTCG
787499 TTGCGATTTTC
1 TTGCGATTTTC
787510 CAAATTCGCA
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
20 39 0.72
21 15 0.28
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:787538 original size:20 final size:21
Alignment explanation
Indices: 787494--787545 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
787484 ATAGTCAGTA
*
787494 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
787515 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
787535 TCGCATTGCGA
1 TCGCATTGCGA
787546 ATTAGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:787761 original size:12 final size:12
Alignment explanation
Indices: 787742--787775 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
787732 CTCTCCGACG
787742 ACATCCGTTCCT
1 ACATCCGTTCCT
*
787754 ATATCCGTTCCT
1 ACATCCGTTCCT
787766 ACATCC-TTCC
1 ACATCCGTTCC
787776 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:788357 original size:24 final size:24
Alignment explanation
Indices: 788330--788383 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
788320 GTATTCAAAA
*
788330 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
788354 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
788378 TTTGAT
1 TTTGAT
788384 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:788575 original size:12 final size:12
Alignment explanation
Indices: 788558--788594 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
788548 ATATAATCCT
788558 GAAGAAGAAAAA
1 GAAGAAGAAAAA
788570 GAAGAAGAAAAA
1 GAAGAAGAAAAA
788582 GAAGAAGAAAAA
1 GAAGAAGAAAAA
788594 G
1 G
788595 TCCCCGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:790903 original size:19 final size:19
Alignment explanation
Indices: 790881--791011 Score: 85
Period size: 19 Copynumber: 7.7 Consensus size: 19
790871 GGAAATTACT
790881 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
790900 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
790914 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
790933 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
790947 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
790966 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
*
790980 ATCGCAATACGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
790999 ATCGCAACGCGAA
1 ATCGCAATGCGAA
791012 TTTAATTTCG
Statistics
Matches: 83, Mismatches: 14, Indels: 30
0.65 0.11 0.24
Matches are distributed among these distances:
14 27 0.33
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 38 0.46
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:790923 original size:33 final size:33
Alignment explanation
Indices: 790881--791007 Score: 193
Period size: 33 Copynumber: 3.8 Consensus size: 33
790871 GGAAATTACT
790881 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
790914 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
790946 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
790980 ATCGCAATACGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
791008 CGAATTTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 82 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:790993 original size:66 final size:66
Alignment explanation
Indices: 790882--791014 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
790872 GAAATTACTA
* *
790882 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
790947 T
66 T
*
790948 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
791013 T
66 T
791014 T
1 T
791015 AATTTCGCGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
T
Found at i:791029 original size:19 final size:19
Alignment explanation
Indices: 791007--791048 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
790997 AAATCGCAAC
791007 GCGAATTTAATTTCGCGTT
1 GCGAATTTAATTTCGCGTT
* *
791026 GCGATTTTCATTTCGCGTT
1 GCGAATTTAATTTCGCGTT
791045 GCGA
1 GCGA
791049 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.40
Consensus pattern (19 bp):
GCGAATTTAATTTCGCGTT
Found at i:791049 original size:19 final size:19
Alignment explanation
Indices: 791016--791082 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
791006 CGCGAATTTA
791016 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
791035 ATTTCGCGTTGCGA--TTC
1 ATTTCGCGTTGCGATTTTC
*
791052 ---TCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
*
791068 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
791083 AGTACTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 10 0.25
16 3 0.08
17 3 0.08
19 24 0.60
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.45
Consensus pattern (19 bp):
ATTTCGCGTTGCGATTTTC
Found at i:791208 original size:14 final size:14
Alignment explanation
Indices: 791189--791225 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
791179 CATCAATTAA
791189 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
791203 ACAAATCACCTTTT
1 ACAAATCAACTTTT
791217 ACAAATCAA
1 ACAAATCAA
791226 TTAAATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:792617 original size:21 final size:21
Alignment explanation
Indices: 792593--792708 Score: 65
Period size: 21 Copynumber: 5.5 Consensus size: 21
792583 GTGGGAGGGA
792593 CCTCTTCAACGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
* * * *
792614 CCTCTTGAACGGTGAGAGAGG
1 CCTCTTCAACGATGACAGTGG
* * * * *
792635 ACTC-TCGAGGAATGATAGGGG
1 CCTCTTCAACG-ATGACAGTGG
*
792656 CCTCTTCAACGAT-AGGAGTGG
1 CCTCTTCAACGATGA-CAGTGG
* * **
792677 ACTCTTGAGGGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
*
792698 CCTCTTGAACG
1 CCTCTTCAACG
792709 GTGGGAGGGG
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
20 4 0.06
21 58 0.87
22 5 0.07
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (21 bp):
CCTCTTCAACGATGACAGTGG
Found at i:792658 original size:42 final size:42
Alignment explanation
Indices: 792612--792750 Score: 172
Period size: 42 Copynumber: 3.3 Consensus size: 42
792602 CGATGACAGT
*
792612 GGCCTCTTGAACGGTGAGAGAGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGGTGAGAGAGGACTCTCGAGGAATGATAGG
* * * * * *
792654 GGCCTCTTCAACGAT-AGGAGTGGACTCTTGAGGGATGACAGT
1 GGCCTCTTCAACGGTGA-GAGAGGACTCTCGAGGAATGATAGG
* * *
792696 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGGTGAGAGAGGACTCTCGAGGAATGATAGG
792738 GGCCTCTTCAACG
1 GGCCTCTTCAACG
792751 ATAGGAGTGG
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 78 0.99
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGGTGAGAGAGGACTCTCGAGGAATGATAGG
Found at i:792721 original size:84 final size:84
Alignment explanation
Indices: 792603--792778 Score: 334
Period size: 84 Copynumber: 2.1 Consensus size: 84
792593 CCTCTTCAAC
792603 GATGACAGTGGCCTCTTGAACGGTGAGAGAGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGAGAGAGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
792668 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
* *
792687 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGAGAGAGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
792752 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
792771 GATGACAG
1 GATGACAG
792779 GCGAGTCGGG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.24, C:0.18, G:0.37, T:0.21
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGAGAGAGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:792763 original size:42 final size:42
Alignment explanation
Indices: 792633--792775 Score: 196
Period size: 42 Copynumber: 3.4 Consensus size: 42
792623 CGGTGAGAGA
792633 GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
1 GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
* * * * * * * *
792675 GGACTCTTGAGGGATGACAGTGGCCTCTTGAACGGTGGGAGG
1 GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
792717 GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
1 GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
* *
792759 GGACTCTTGAGGGATGA
1 GGACTCTCGAGGAATGA
792776 CAGGCGAGTC
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (42 bp):
GGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGGAGT
Found at i:793106 original size:93 final size:91
Alignment explanation
Indices: 792998--793181 Score: 291
Period size: 91 Copynumber: 2.0 Consensus size: 91
792988 TTTCAAACTA
* *
792998 TCAACCAAAAGAC-AAA-ATAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAG
1 TCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAGTTTAG
793061 CAGAATTGGCAGCAACCGAATAAATTTACT
62 CAGAATTGGCAGCAACCGAATAAATTTACT
*
793091 TCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGT
1 TCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGA
793156 ATTGGCAGCAACCGAATAAATTTACT
66 ATTGGCAGCAACCGAATAAATTTACT
793182 AAGCAATCTA
Statistics
Matches: 86, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
91 42 0.49
93 13 0.15
94 3 0.03
95 28 0.33
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.22
Consensus pattern (91 bp):
TCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTACT
Found at i:794932 original size:33 final size:33
Alignment explanation
Indices: 794875--794973 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
794865 ACGAGATAAT
*
794875 GAGAATCGTAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
794909 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
**
794942 GAGAATCGCAACGCGAAATGAAAATCGCAACG
1 GAGAATCGCAACGCGAAATGACTATCGCAACG
794974 CGAAATGAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
33 47 0.78
34 13 0.22
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.12
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:794967 original size:19 final size:19
Alignment explanation
Indices: 794850--794995 Score: 96
Period size: 19 Copynumber: 8.1 Consensus size: 19
794840 TCTTTTGGTT
* *
794850 GAAAAGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
* *
794869 GATAATGAGAATCGTAACGC
1 GA-AATGAAAATCGCAACGC
**
794889 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
794907 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
794923 GAAATGACTATCGCGA--C
1 GAAATGAAAATCGCAACGC
*
794940 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
794956 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
794975 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
794994 GA
1 GA
794996 TTTTGGTTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
14 17 0.17
15 2 0.02
16 4 0.04
17 3 0.03
18 3 0.03
19 43 0.44
20 24 0.24
21 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:795018 original size:19 final size:19
Alignment explanation
Indices: 794991--795034 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
794981 AAAATCGCAA
**
794991 TGCGATTTTGGTTTCGCG-
1 TGCGATTTTTATTTCGCGT
795009 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
795028 TGCGATT
1 TGCGATT
795035 CTCTCGTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:795682 original size:41 final size:41
Alignment explanation
Indices: 795590--795684 Score: 113
Period size: 41 Copynumber: 2.3 Consensus size: 41
795580 CGCTATGTAA
* * * *
795590 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGTATCTCATTGCGATTTTCTAAT
*
795631 ATCGCATTGCGATAGTCAGTAT-TGCATTGCGATTTTCTCAAT
1 ATCGCGTTGCGATAGTCAGTATCT-CATTGCGATTTTCT-AAT
795673 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
795685 TTACTTATTC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 1 0.02
41 43 0.93
42 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGTATCTCATTGCGATTTTCTAAT
Found at i:795696 original size:20 final size:21
Alignment explanation
Indices: 795654--795703 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
795644 AGTCAGTATT
*
795654 GCATTGCGATTTTCTCAATTC
1 GCATTGCGATTTACTCAATTC
* *
795675 GCGTTGCGATTTACT-TATTC
1 GCATTGCGATTTACTCAATTC
795695 GCATTGCGA
1 GCATTGCGA
795704 ATTGGGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (21 bp):
GCATTGCGATTTACTCAATTC
Found at i:795774 original size:21 final size:21
Alignment explanation
Indices: 795734--795774 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
795724 ACTGTAGACC
**
795734 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
795755 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
795775 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:799136 original size:35 final size:36
Alignment explanation
Indices: 799067--799136 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
799057 ATAATATATT
*
799067 TAATATGATTAAAAGACCAAAGAAAAAACCAACAAC
1 TAATATGATTAAAAGACAAAAGAAAAAACCAACAAC
799103 TAATATGATTAAAAGACAAAAG-AAAAACCAACAA
1 TAATATGATTAAAAGACAAAAGAAAAAACCAACAA
799137 GAAGTTGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 12 0.36
36 21 0.64
ACGTcount: A:0.63, C:0.14, G:0.09, T:0.14
Consensus pattern (36 bp):
TAATATGATTAAAAGACAAAAGAAAAAACCAACAAC
Found at i:799199 original size:17 final size:17
Alignment explanation
Indices: 799177--799210 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
799167 TCCTTACCTT
799177 AAGTAA-GATCAAAGTTC
1 AAGTAAGGAT-AAAGTTC
799194 AAGTAAGGATAAAGTTC
1 AAGTAAGGATAAAGTTC
799211 GAATCTTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (17 bp):
AAGTAAGGATAAAGTTC
Found at i:800477 original size:21 final size:21
Alignment explanation
Indices: 800460--800500 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
800450 TGTGGCTTGT
800460 TCAACGATCAACACGGCTCGA
1 TCAACGATCAACACGGCTCGA
* *
800481 TCAATGATCAACATGGCTCG
1 TCAACGATCAACACGGCTCG
800501 GTTCATCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (21 bp):
TCAACGATCAACACGGCTCGA
Found at i:801095 original size:16 final size:16
Alignment explanation
Indices: 801074--801107 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
801064 ATCTTAAAAT
801074 TTAATT-TTTTTTTATA
1 TTAATTATTTTTTT-TA
801090 TTAATTATTTTTTTTA
1 TTAATTATTTTTTTTA
801106 TT
1 TT
801108 TATGATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTAATTATTTTTTTTA
Found at i:817994 original size:21 final size:20
Alignment explanation
Indices: 817970--818036 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
817960 TTTTTTAATT
817970 TTTTATAATTAAGGTTCTTAA
1 TTTTATAATTAA-GTTCTTAA
* * * *
817991 TTTTGTAATCTAACTTTTTAT
1 TTTTATAAT-TAAGTTCTTAA
*
818012 TTTTATAATTGAAGCTCTTAA
1 TTTTATAATT-AAGTTCTTAA
818033 TTTT
1 TTTT
818037 TTTCAATCTC
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 1 0.03
21 31 0.89
22 3 0.09
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTATAATTAAGTTCTTAA
Found at i:818079 original size:85 final size:85
Alignment explanation
Indices: 817988--818545 Score: 524
Period size: 85 Copynumber: 6.6 Consensus size: 85
817978 TTAAGGTTCT
* * * *
817988 TAATTTTGTAATCTAACTTTTTATTTTTATAATTGAAGCTCTTAATTTTTTTCAATCTCACTTTT
1 TAATTTTTTAATCTAACTTTTTACTTTTATAATTGAAGCCCCTAA-TTTTTTCAATCTCACTTTT
818053 TACCTTTATAATTGAGGCCCC
65 TACCTTTATAATTGAGGCCCC
* * * * **
818074 T-ATTTTTTAATCTAACTTTCTACTTTTATAATTGAAGCCCTTAATTTTTTTTAATATCAC-ACT
1 TAATTTTTTAATCTAACTTTTTACTTTTATAATTGAAGCCCCTAA-TTTTTTCAATCTCACTTTT
* *
818137 TACCTTTATAATTGATG-CCT
65 TACCTTTATAATTGAGGCCCC
** * *
818157 TGAATTTTTTTCAATCCCAC-TTTTACTTTTATAATTGAAACCCCTAA-TTTTTCAACCTCA-TG
1 T-AA-TTTTTT-AATCTAACTTTTTACTTTTATAATTGAAGCCCCTAATTTTTTCAATCTCACT-
*
818219 TTTTACCTTTATAATTGAAG-CCC
62 TTTTACCTTTATAATTGAGGCCCC
* * * * ** *
818242 TTATTTTTTAATCTAACTTTTTACATTTATATTTGACGCATCTAATTTTTTCAATCCCACTTTTT
1 TAATTTTTTAATCTAACTTTTTACTTTTATAATTGAAGCCCCTAATTTTTTCAATCTCACTTTTT
* * * *
818307 ACATTTATAATTGAAGTCTC
66 ACCTTTATAATTGAGGCCCC
* * * *
818327 TAATTTTTTTAATTTCACTTTTTACATTTATAATTG-AGACCCCTAATTTTTTCAATCTCACCTT
1 TAA-TTTTTTAATCTAACTTTTTACTTTTATAATTGAAG-CCCCTAATTTTTTCAATCTCACTTT
* *
818391 TTATCTTTATAATTGAGACCCC
64 TTACCTTTATAATTGAGGCCCC
* * * * * * *
818413 T-ATTTTTTCAATCTCACTTTCTACCTTTATAATTGAAGTCCCT-ATTTTTTTAATCACATTTTT
1 TAATTTTTT-AATCTAACTTTTTACTTTTATAATTGAAGCCCCTAATTTTTTCAATCTCACTTTT
* *
818476 TATCTTTATAATTGAGGCCTC
65 TACCTTTATAATTGAGGCCCC
* * * * *
818497 TAATTTTTCCAATCTAACTTTTCACTTTTATAATTTAGGCGCCTAATTT
1 TAATTTTT-TAATCTAACTTTTTACTTTTATAATTGAAGCCCCTAATTT
818546 AATCATTTTC
Statistics
Matches: 386, Mismatches: 69, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
82 6 0.02
83 30 0.08
84 100 0.26
85 140 0.36
86 104 0.27
87 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (85 bp):
TAATTTTTTAATCTAACTTTTTACTTTTATAATTGAAGCCCCTAATTTTTTCAATCTCACTTTTT
ACCTTTATAATTGAGGCCCC
Found at i:818231 original size:169 final size:168
Alignment explanation
Indices: 817997--818531 Score: 557
Period size: 169 Copynumber: 3.1 Consensus size: 168
817987 TTAATTTTGT
* * * * *
817997 AATCTAACTTTTTATTTTTATAATTGAAGCTCTTAATTTTTTTCAATCTCACTTTTTACCTTTAT
1 AATCTCAC-TTTTACTTTTATAATTGAAACCCCTAA-TTTTTTCAATCTCA-TTTTTACCTTTAT
*
818062 AATTGAGGCCCCTATTTTTTAATCTAACTTTCTACTTTTATAATTGAAGCCCTTAATTTTTTTTA
63 AATTGAGGCCCCTATTTTTTAATCTAACTTTCTACATTTATAATTGAAGCCCTTAA-TTTTTTTA
* *
818127 ATATCACACTTACCTTTATAATTGATGCCT-TGAATTTTTTTC
127 ATATCACATTTACCTTTATAATTGAAGCCTCT-AATTTTTTTC
* *
818169 AATCCCACTTTTACTTTTATAATTGAAACCCCTAA-TTTTTCAACCTCATGTTTTACCTTTATAA
1 AATCTCACTTTTACTTTTATAATTGAAACCCCTAATTTTTTCAATCTCAT-TTTTACCTTTATAA
* * * * * * *
818233 TTGAAGCCCTTATTTTTTAATCTAACTTTTTACATTTATATTTGACG-CATCTAATTTTTTCAAT
65 TTGAGGCCCCTATTTTTTAATCTAACTTTCTACATTTATAATTGAAGCCCT-TAATTTTTTTAAT
** * * *
818297 CCCACTTTTTACATTTATAATTGAAGTCTCTAATTTTTTT-
129 ATCAC-ATTTACCTTTATAATTGAAGCCTCTAATTTTTTTC
* * * * *
818337 AATTTCACTTTTTACATTTATAATTGAGACCCCTAATTTTTTCAATCTCACCTTTTATCTTTATA
1 AATCTCAC-TTTTACTTTTATAATTGAAACCCCTAATTTTTTCAATCTCA-TTTTTACCTTTATA
* * *
818402 ATTGAGACCCCTATTTTTTCAATCTCACTTTCTACCTTTATAATTGAAGTCCC-T-ATTTTTTT-
64 ATTGAGGCCCCTATTTTTT-AATCTAACTTTCTACATTTATAATTGAAG-CCCTTAATTTTTTTA
* * *
818464 A-ATCACATTTTTTATCTTTATAATTGAGGCCTCTAA-TTTTTCC
127 ATATCACA---TTTACCTTTATAATTGAAGCCTCTAATTTTTTTC
*
818507 AATCTAACTTTTCACTTTTATAATT
1 AATCTCACTTTT-ACTTTTATAATT
818532 TAGGCGCCTA
Statistics
Matches: 298, Mismatches: 50, Indels: 32
0.78 0.13 0.08
Matches are distributed among these distances:
168 24 0.08
169 132 0.44
170 87 0.29
171 48 0.16
172 6 0.02
173 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.05, T:0.50
Consensus pattern (168 bp):
AATCTCACTTTTACTTTTATAATTGAAACCCCTAATTTTTTCAATCTCATTTTTACCTTTATAAT
TGAGGCCCCTATTTTTTAATCTAACTTTCTACATTTATAATTGAAGCCCTTAATTTTTTTAATAT
CACATTTACCTTTATAATTGAAGCCTCTAATTTTTTTC
Found at i:818543 original size:43 final size:42
Alignment explanation
Indices: 817970--818545 Score: 438
Period size: 43 Copynumber: 13.5 Consensus size: 42
817960 TTTTTTAATT
* * * * * *
817970 TTTTATAATTAAGGTTCTTAATTTTGT-AATCTAACTTTTTAT
1 TTTTATAATTGAGG-CCCTAATTTTTTCAATCTCACTTTTTAC
* *
818012 TTTTATAATTGAAGCTCTTAATTTTTTTCAATCTCACTTTTTAC
1 TTTTATAATTGAGGC-CCTAA-TTTTTTCAATCTCACTTTTTAC
* * *
818056 CTTTATAATTGAGGCCCCT-ATTTTTT-AATCTAACTTTCTAC
1 TTTTATAATTGAGG-CCCTAATTTTTTCAATCTCACTTTTTAC
* * * **
818097 TTTTATAATTGAAGCCCTTAATTTTTTTTAATATCAC-ACTTAC
1 TTTTATAATTGAGGCCC-TAA-TTTTTTCAATCTCACTTTTTAC
* * * *
818140 CTTTATAATTGATGCCTTGAATTTTTTTCAATCCCAC-TTTTAC
1 TTTTATAATTGAGGCCCT-AA-TTTTTTCAATCTCACTTTTTAC
** *
818183 TTTTATAATTGAAACCCCTAA-TTTTTCAACCTCA-TGTTTTAC
1 TTTTATAATTG-AGGCCCTAATTTTTTCAATCTCACT-TTTTAC
* * * *
818225 CTTTATAATTGAAGCCCTTATTTTTT-AATCTAACTTTTTAC
1 TTTTATAATTGAGGCCCTAATTTTTTCAATCTCACTTTTTAC
* * * * *
818266 ATTTATATTTGACGCATCTAATTTTTTCAATCCCACTTTTTAC
1 TTTTATAATTGAGGC-CCTAATTTTTTCAATCTCACTTTTTAC
* * * * *
818309 ATTTATAATTGAAGTCTCTAATTTTTTTAATTTCACTTTTTAC
1 TTTTATAATTG-AGGCCCTAATTTTTTCAATCTCACTTTTTAC
* * *
818352 ATTTATAATTGAGACCCCTAATTTTTTCAATCTCACCTTTTA-
1 TTTTATAATTGAG-GCCCTAATTTTTTCAATCTCACTTTTTAC
* *
818394 TCTTTATAATTGAGACCCCT-ATTTTTTCAATCTCACTTTCTAC
1 T-TTTATAATTGAG-GCCCTAATTTTTTCAATCTCACTTTTTAC
* * * * *
818437 CTTTATAATTGAAGTCCCT-ATTTTTTTAATCACATTTTTTA-
1 TTTTATAATTG-AGGCCCTAATTTTTTCAATCTCACTTTTTAC
* * *
818478 TCTTTATAATTGAGGCCTCTAATTTTTCCAATCTAACTTTTCAC
1 T-TTTATAATTGAGGCC-CTAATTTTTTCAATCTCACTTTTTAC
*
818522 TTTTATAATTTAGGCGCCTAATTT
1 TTTTATAATTGAGGC-CCTAATTT
818546 AATCATTTTC
Statistics
Matches: 435, Mismatches: 73, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
40 3 0.01
41 71 0.16
42 122 0.28
43 197 0.45
44 41 0.09
45 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (42 bp):
TTTTATAATTGAGGCCCTAATTTTTTCAATCTCACTTTTTAC
Found at i:820927 original size:2 final size:2
Alignment explanation
Indices: 820920--820948 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
820910 TTATGCATTA
820920 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
820949 AAATATTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:822558 original size:134 final size:134
Alignment explanation
Indices: 822318--822885 Score: 786
Period size: 134 Copynumber: 4.2 Consensus size: 134
822308 GTTGTTACTC
* * * * *
822318 AGGGAATATCAGATCTGG-GGATTCTGATTCATTCCACTGTTC-TTCAGGGAAGATTGAATTTGG
1 AGGGAATATCAGATCTGGATGAGT-TGATCCATTCCACTG-TCACTCAGGGAAGATTGAATCTGG
* * * * **
822381 GTAGACTTGTTCCGTTGTCACTCAGGGAATATCAAATCATGAAAGATAGTGATATGTTCTGCTTC
64 GTAGACTTGTTCCGTTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCTGTTCCACTTC
822446 TTCTGA
129 TTCTGA
* *
822452 AGGGAATATCAGATCTGGATGAGTTGATCCACTCCACTGTCACTCAGGGAAGATTAAATCAT-GG
1 AGGGAATATCAGATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGGAAGATTGAATC-TGGG
* * *
822516 TAGACTTGTTCCGTTGTCACTCAGGGAATATCAAGTCTTGAAAAAGAGTGATCTGTTCCACTTCT
65 TAGACTTGTTCCGTTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCTGTTCCACTTCT
822581 TCTGA
130 TCTGA
* **
822586 AGGGAATATCAAATCTGGATGAGTTGATCCATTCCGTTGTCACTCAGGGAAGATTGAATCTGGGT
1 AGGGAATATCAGATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGGAAGATTGAATCTGGGT
* *
822651 AGACTTGTTCC-TCTGTCACTCAGAGAATATCAAATCTTGAAAGAGAATGATTTGTTCCACTTCT
66 AGACTTGTTCCGT-TGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCTGTTCCACTTCT
**
822715 TCAAA
130 TCTGA
* * * *
822720 AGGGAATATCAGATCTGGATGAGTTGATCCATTCCGCTATCACTCAGGGAATATTGAATCTGGGC
1 AGGGAATATCAGATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGGAAGATTGAATCTGGGT
** *
822785 AGACTTGTTCCAATGTCACTCAGGGAATATCAAATCTTGAAAGAGAATTATCTGTTCCACTTCTT
66 AGACTTGTTCCGTTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCTGTTCCACTTCTT
*
822850 CTTA
131 CTGA
822854 AGGGAAT-TCAGATCTGGATGAGTTGATCCATT
1 AGGGAATATCAGATCTGGATGAGTTGATCCATT
822886 GAATTGGGAC
Statistics
Matches: 391, Mismatches: 37, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
133 29 0.07
134 358 0.92
135 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (134 bp):
AGGGAATATCAGATCTGGATGAGTTGATCCATTCCACTGTCACTCAGGGAAGATTGAATCTGGGT
AGACTTGTTCCGTTGTCACTCAGGGAATATCAAATCTTGAAAGAGAATGATCTGTTCCACTTCTT
CTGA
Found at i:823277 original size:42 final size:41
Alignment explanation
Indices: 823194--823288 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 41
823184 ATGGAGGGCT
* * * *
823194 CAAAGGACTTATCATCTTGCTTGAAAGGCTTACAAATGACC
1 CAAAGGACTTATCATCATGCTCGAAAGACTTACAAACGACC
* **
823235 CAAAGGATTTATGCATCATGCTCGAAAGACTTACTGACGACC
1 CAAAGGACTTAT-CATCATGCTCGAAAGACTTACAAACGACC
*
823277 CGAAGGACTTAT
1 CAAAGGACTTAT
823289 AAATTTTAGA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 11 0.25
42 33 0.75
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (41 bp):
CAAAGGACTTATCATCATGCTCGAAAGACTTACAAACGACC
Found at i:823670 original size:28 final size:28
Alignment explanation
Indices: 823638--823691 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
823628 GAAAACATCC
823638 TGCATTTTATACAAGCGGTAATATGTCT
1 TGCATTTTATACAAGCGGTAATATGTCT
*
823666 TGCATTTTATACAAGCTGTAATATGT
1 TGCATTTTATACAAGCGGTAATATGT
823692 GCCCCTTCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (28 bp):
TGCATTTTATACAAGCGGTAATATGTCT
Found at i:824687 original size:2 final size:2
Alignment explanation
Indices: 824680--824708 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
824670 TTGTATACAC
824680 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
824709 ATTTGTTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:826845 original size:13 final size:12
Alignment explanation
Indices: 826817--826850 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
826807 AAATACATGC
826817 AATGCAAATGTA
1 AATGCAAATGTA
*
826829 AATGTAAATGCTA
1 AATGCAAATG-TA
826842 AATGCAAAT
1 AATGCAAAT
826851 ACAAAAGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (12 bp):
AATGCAAATGTA
Found at i:832203 original size:18 final size:19
Alignment explanation
Indices: 832180--832222 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
832170 CAGTAATCCT
832180 ATTCC-CTGGTAATCTTAC
1 ATTCCACTGGTAATCTTAC
*
832198 ATTCCCACTGGTAATCTTAT
1 ATT-CCACTGGTAATCTTAC
832218 ATTCC
1 ATTCC
832223 GTGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.18
20 15 0.68
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (19 bp):
ATTCCACTGGTAATCTTAC
Found at i:832210 original size:20 final size:20
Alignment explanation
Indices: 832185--832222 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
832175 ATCCTATTCC
832185 CTGGTAATCTTACATTCCCA
1 CTGGTAATCTTACATTCCCA
*
832205 CTGGTAATCTTATATTCC
1 CTGGTAATCTTACATTCC
832223 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:834696 original size:17 final size:17
Alignment explanation
Indices: 834674--834745 Score: 144
Period size: 17 Copynumber: 4.2 Consensus size: 17
834664 GATTACAAAG
834674 GAAAACTAAATAAAGTA
1 GAAAACTAAATAAAGTA
834691 GAAAACTAAATAAAGTA
1 GAAAACTAAATAAAGTA
834708 GAAAACTAAATAAAGTA
1 GAAAACTAAATAAAGTA
834725 GAAAACTAAATAAAGTA
1 GAAAACTAAATAAAGTA
834742 GAAA
1 GAAA
834746 TCTACTTTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (17 bp):
GAAAACTAAATAAAGTA
Found at i:836712 original size:20 final size:21
Alignment explanation
Indices: 836674--836721 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
836664 ATGGCCACCA
836674 ATACTAAGCCTCTCAGTATCG
1 ATACTAAGCCTCTCAGTATCG
* **
836695 GTACTAA-CCTCTGGGTATCG
1 ATACTAAGCCTCTCAGTATCG
836715 ATACTAA
1 ATACTAA
836722 TGACTTATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (21 bp):
ATACTAAGCCTCTCAGTATCG
Found at i:840080 original size:107 final size:107
Alignment explanation
Indices: 839894--840107 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
839884 TCATACTTCG
839894 CTTAAACTTGGACAAGTATGAAATATATTAATCTCACATCTAAATCTAATCTATGAACATATATT
1 CTTAAACTTGGACAAGTATGAAATATATTAATCTCACATCTAAATCTAATCTATGAACATATATT
839959 GTTAAGAAACTAAATTTGTTATTTCTGTTTTTCAGTTGTAAC
66 GTTAAGAAACTAAATTTGTTATTTCTGTTTTTCAGTTGTAAC
840001 CTTAAACTTGGACAAGTATGAAATATATTAATCTCACATCTAAATCTAATCTATGAACATATATT
1 CTTAAACTTGGACAAGTATGAAATATATTAATCTCACATCTAAATCTAATCTATGAACATATATT
840066 GTTAAGAAACTAAATTTGTTATTTCTGTTTTTCAGTTGTAAC
66 GTTAAGAAACTAAATTTGTTATTTCTGTTTTTCAGTTGTAAC
840108 TAATTTACAG
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (107 bp):
CTTAAACTTGGACAAGTATGAAATATATTAATCTCACATCTAAATCTAATCTATGAACATATATT
GTTAAGAAACTAAATTTGTTATTTCTGTTTTTCAGTTGTAAC
Found at i:849764 original size:18 final size:18
Alignment explanation
Indices: 849741--849775 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
849731 CCGCGTGGAA
849741 ATGTCCCGAAGGACCACT
1 ATGTCCCGAAGGACCACT
849759 ATGTCCCGAAGGACCAC
1 ATGTCCCGAAGGACCAC
849776 ATATCACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACT
Found at i:850863 original size:22 final size:22
Alignment explanation
Indices: 850838--850902 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
850828 AATATATTGT
850838 ATGAACAGTACCGTGAACAGTA
1 ATGAACAGTACCGTGAACAGTA
* *
850860 ATGAACAATACCGTGAACAATA
1 ATGAACAGTACCGTGAACAGTA
* *
850882 ATGAACAGTGCTGTGAACAGT
1 ATGAACAGTACCGTGAACAGT
850903 GCCGAATTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.20
Consensus pattern (22 bp):
ATGAACAGTACCGTGAACAGTA
Found at i:852587 original size:30 final size:31
Alignment explanation
Indices: 852530--852587 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
852520 CAACCATTTA
* *
852530 CAACTTTTCTAAAAACTACGAATTGGTCCCC
1 CAACTTTTCTAAAAACTACAAACTGGTCCCC
**
852561 CAACTTTT-TAAAATTTACAAACTGGTC
1 CAACTTTTCTAAAAACTACAAACTGGTC
852588 TCTAAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 15 0.65
31 8 0.35
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.33
Consensus pattern (31 bp):
CAACTTTTCTAAAAACTACAAACTGGTCCCC
Found at i:853735 original size:612 final size:609
Alignment explanation
Indices: 852575--853803 Score: 2415
Period size: 612 Copynumber: 2.0 Consensus size: 609
852565 TTTTTAAAAT
852575 TTACAAACTGGTCTCTAAATTTTCTAAAGCTTGTAAAATATTTCCAAAACCATTTCCAGACCTTA
1 TTACAAACTGGTCTCTAAATTTTCTAAAGCTTGTAAAATATTTCCAAAACCATTTCCAGACCTTA
852640 TATATTTTTTCCATAATTTTTCTCACTCAAATTCATCATGTTTAAATTTTCAAATAATAATTTCT
66 TATATTTTTTCCATAATTTTTCTCACTCAAATTCATCATGTTTAAATTTTCAAATAATAATTTCT
852705 AGAAAGATTGAACATGTTTTAACCATAAATCAAACTTGAAATGAATCTACAACCTCTAAACATCA
131 AGAAAGATTGAACATGTTTTAACCATAAATCAAACTTGAAATGAATCTACAACCTCTAAACATCA
852770 AGATTTCATCAATTTCATGAATCTTATCATGAACATAAACCCTTAAATTTGGGATCTTTTAAATC
196 AGATTTCATCAATTTCATGAATCTTATCATGAACATAAACCCTTAAATTTGGGATCTTTTAAATC
852835 TAGCAAGAATAGAAAGAAATATTGGTACCAAATGATAGCGTTTTTCGTGTAGATCATTTTCCTAT
261 TAGCAAGAATAGAAAGAAATATTGGTACCAAATGATAGCGTTTTTCGTGTAGATCATTTTCCTAT
852900 TTCACGACATAACTATAATTCCAAATGAATTAGCTCAAAAATTGAAAACAAATGTTTTCTTACCT
326 TTCACGACATAACTATAATTCCAAATGAATTAGCTCAAAAATTGAAAACAAATGTTTTCTTACCT
852965 TTAGTGAGAAGCTCACGTTAGTGCTGGAGAAGATGAATGAATTCATCCCATAATTCTTCATCTTT
391 TTAGTGAGAAGCTCACGTTAGTGCTGGAGAAGATGAATGAATTCATCCCATAATTCTTCATCTTT
853030 CTTTAATATTTAATGAATATAAAATTCATTAAATGTCAAATGACCACTTTACCCTTAAAATCAAA
456 CTTTAATATTTAATGAATATAAAATTCATTAAATGTCAAATGACCACTTTACCCTTAAAATCAAA
853095 ATATTTTCACTAATTTACCCTTAATGAACTTGATATTTACATTAATACAAAGCTACAGTAACCTT
521 ATATTTTCACTAATTTACCCTTAATGAACTTGATATTTACATTAATACAAAGCTACAGTAACCTT
853160 ATCATCTTCCAATAGTCAAAGATA
586 ATCATCTTCCAATAGTCAAAGATA
853184 TTACAAACTGGTCTCTAAATTTTCTAAAGCTTGTAAAATATTTCCAAAACCATTTCCAGACCTTA
1 TTACAAACTGGTCTCTAAATTTTCTAAAGCTTGTAAAATATTTCCAAAACCATTTCCAGACCTTA
853249 TATATTTTTTCCATAATTTTTCTCACTCAAATTCATCATGTTTAAATTTTCAAATAATAATTTCT
66 TATATTTTTTCCATAATTTTTCTCACTCAAATTCATCATGTTTAAATTTTCAAATAATAATTTCT
853314 AGAAAGATTGAACATGTTTTAACCATAAATCAAACTTGAAAATGAATCTACAACCTCTAAACATC
131 AGAAAGATTGAACATGTTTTAACCATAAATCAAACTTG-AAATGAATCTACAACCTCTAAACATC
853379 AAGATTTATCATCAATTTCATGAATCTTATCATGAACATAAACCCTTAAATTTGGGATCTTTTAA
195 AAGA-TT-TCATCAATTTCATGAATCTTATCATGAACATAAACCCTTAAATTTGGGATCTTTTAA
853444 ATCTAGCAAGAATAGAAAGAAATATTGGTACCAAATGATAGCGTTTTTCGTGTAGATCATTTTCC
258 ATCTAGCAAGAATAGAAAGAAATATTGGTACCAAATGATAGCGTTTTTCGTGTAGATCATTTTCC
853509 TATTTCACGACATAACTATAATTCCAAATGAATTAGCTCAAAAATTGAAAACAAATGTTTTCTTA
323 TATTTCACGACATAACTATAATTCCAAATGAATTAGCTCAAAAATTGAAAACAAATGTTTTCTTA
853574 CCTTTAGTGAGAAGCTCACGTTAGTGCTGGAGAAGATGAATGAATTCATCCCATAATTCTTCATC
388 CCTTTAGTGAGAAGCTCACGTTAGTGCTGGAGAAGATGAATGAATTCATCCCATAATTCTTCATC
853639 TTTCTTTAATATTTAATGAATATAAAATTCATTAAATGTCAAATGACCACTTTACCCTTAAAATC
453 TTTCTTTAATATTTAATGAATATAAAATTCATTAAATGTCAAATGACCACTTTACCCTTAAAATC
853704 AAAATATTTTCACTAATTTACCCTTAATGAACTTGATATTTACATTAATACAAAGCTACAGTAAC
518 AAAATATTTTCACTAATTTACCCTTAATGAACTTGATATTTACATTAATACAAAGCTACAGTAAC
853769 CTTATCATCTTCCAATAGTCAAAGATA
583 CTTATCATCTTCCAATAGTCAAAGATA
*
853796 -GACAAACT
1 TTACAAACT
853804 ATTTTCCCTC
Statistics
Matches: 616, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
609 168 0.27
610 30 0.05
611 9 0.01
612 409 0.66
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (609 bp):
TTACAAACTGGTCTCTAAATTTTCTAAAGCTTGTAAAATATTTCCAAAACCATTTCCAGACCTTA
TATATTTTTTCCATAATTTTTCTCACTCAAATTCATCATGTTTAAATTTTCAAATAATAATTTCT
AGAAAGATTGAACATGTTTTAACCATAAATCAAACTTGAAATGAATCTACAACCTCTAAACATCA
AGATTTCATCAATTTCATGAATCTTATCATGAACATAAACCCTTAAATTTGGGATCTTTTAAATC
TAGCAAGAATAGAAAGAAATATTGGTACCAAATGATAGCGTTTTTCGTGTAGATCATTTTCCTAT
TTCACGACATAACTATAATTCCAAATGAATTAGCTCAAAAATTGAAAACAAATGTTTTCTTACCT
TTAGTGAGAAGCTCACGTTAGTGCTGGAGAAGATGAATGAATTCATCCCATAATTCTTCATCTTT
CTTTAATATTTAATGAATATAAAATTCATTAAATGTCAAATGACCACTTTACCCTTAAAATCAAA
ATATTTTCACTAATTTACCCTTAATGAACTTGATATTTACATTAATACAAAGCTACAGTAACCTT
ATCATCTTCCAATAGTCAAAGATA
Found at i:859574 original size:21 final size:21
Alignment explanation
Indices: 859548--859588 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
859538 TAAATTGTGT
859548 ATCGATGCACTACTATAGTGC
1 ATCGATGCACTACTATAGTGC
**
859569 ATCGATGCACTGTTATAGTG
1 ATCGATGCACTACTATAGTG
859589 TTACTACAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (21 bp):
ATCGATGCACTACTATAGTGC
Found at i:860376 original size:25 final size:24
Alignment explanation
Indices: 860319--860398 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
860309 TCGTATAAAC
**
860319 TTGCACCTTAGTGCCACGTAGAAT
1 TTGCACCGAAGTGCCACGTAGAAT
*
860343 TTGTC-CCGAA-TGACCGCGTAGAAAT
1 TTG-CACCGAAGTG-CCACGTAG-AAT
860368 TTGCACCGAAGTGCCACGTAGAA-
1 TTGCACCGAAGTGCCACGTAGAAT
860391 TTGCACCG
1 TTGCACCG
860399 TAGTTCCATA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
23 10 0.21
24 16 0.34
25 19 0.40
26 2 0.04
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (24 bp):
TTGCACCGAAGTGCCACGTAGAAT
Found at i:865828 original size:12 final size:12
Alignment explanation
Indices: 865808--865839 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
865798 ATATATGGTA
*
865808 TGAAAAGTACCG
1 TGAACAGTACCG
865820 TGAACAGTACCG
1 TGAACAGTACCG
865832 TGAACAGT
1 TGAACAGT
865840 GAAATTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (12 bp):
TGAACAGTACCG
Found at i:866637 original size:25 final size:24
Alignment explanation
Indices: 866609--866701 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
866599 CACCACAGCT
*
866609 CGTATAAACTTGCACCGTAGTGCCA
1 CGTA-AAATTTGCACCGTAGTGCCA
* * *
866634 CGTAGAATTTGTC-CCG-AATGACCG
1 CGTAAAATTTG-CACCGTAGTG-CCA
*
866658 CGTAGAAATTTGCACCGAAGTGCCA
1 CGTA-AAATTTGCACCGTAGTGCCA
*
866683 CGTAGAA-TTGCACCGTAGT
1 CGTAAAATTTGCACCGTAGT
866702 TCCATATAAG
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
23 14 0.26
24 17 0.31
25 20 0.37
26 3 0.06
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (24 bp):
CGTAAAATTTGCACCGTAGTGCCA
Found at i:866661 original size:24 final size:24
Alignment explanation
Indices: 866618--866697 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 24
866608 TCGTATAAAC
*
866618 TTGCACCGTAGTGCCACGTAGAAT
1 TTGCACCGAAGTGCCACGTAGAAT
*
866642 TTGTC-CCGAA-TGACCGCGTAGAAAT
1 TTG-CACCGAAGTG-CCACGTAG-AAT
866667 TTGCACCGAAGTGCCACGTAGAA-
1 TTGCACCGAAGTGCCACGTAGAAT
866690 TTGCACCG
1 TTGCACCG
866698 TAGTTCCATA
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
23 10 0.21
24 17 0.35
25 19 0.40
26 2 0.04
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (24 bp):
TTGCACCGAAGTGCCACGTAGAAT
Found at i:870740 original size:30 final size:30
Alignment explanation
Indices: 870706--870794 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 30
870696 ACAGAAACTT
* *
870706 AACGGGAAATAAAGTCCCATGCAGAATCAA
1 AACGGGGAACAAAGTCCCATGCAGAATCAA
** * *
870736 AACGGGGAACCTATTCCCATGCAGAATCAG
1 AACGGGGAACAAAGTCCCATGCAGAATCAA
* * *
870766 GATGGGGAACGAAGTCCCATGCAGAATCA
1 AACGGGGAACAAAGTCCCATGCAGAATCA
870795 GATATGCATC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (30 bp):
AACGGGGAACAAAGTCCCATGCAGAATCAA
Found at i:870795 original size:30 final size:30
Alignment explanation
Indices: 870717--870796 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
870707 ACGGGAAATA
*
870717 AAGTCCCATGCAGAATCAAAACGGGGAACC
1 AAGTCCCATGCAGAATCAGAACGGGGAACC
* * * * *
870747 TATTCCCATGCAGAATCAGGATGGGGAACG
1 AAGTCCCATGCAGAATCAGAACGGGGAACC
870777 AAGTCCCATGCAGAATCAGA
1 AAGTCCCATGCAGAATCAGA
870797 TATGCATCAA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.36, C:0.24, G:0.25, T:0.15
Consensus pattern (30 bp):
AAGTCCCATGCAGAATCAGAACGGGGAACC
Found at i:871408 original size:20 final size:21
Alignment explanation
Indices: 871372--871411 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
871362 CTTCAAAAAA
871372 GTCAGTAGGTCAAAGTCAACG
1 GTCAGTAGGTCAAAGTCAACG
*
871393 GTCAGT-GGTCACAGTCAAC
1 GTCAGTAGGTCAAAGTCAAC
871412 AGTGAACGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (21 bp):
GTCAGTAGGTCAAAGTCAACG
Found at i:873703 original size:24 final size:24
Alignment explanation
Indices: 873653--873703 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
873643 TACCTAAGTC
**
873653 GTCTGGTAACCGTTGGAGCACTTT
1 GTCTGGTAACCGTTGGAGCACGCT
*
873677 GTCTGGTAACCGTTGGAGCGCGCT
1 GTCTGGTAACCGTTGGAGCACGCT
873701 GTC
1 GTC
873704 AACCCCAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (24 bp):
GTCTGGTAACCGTTGGAGCACGCT
Found at i:874231 original size:13 final size:13
Alignment explanation
Indices: 874213--874240 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
874203 CTGAGTCAAC
874213 TCGTTGACTTTGA
1 TCGTTGACTTTGA
874226 TCGTTGACTTTGA
1 TCGTTGACTTTGA
874239 TC
1 TC
874241 AAAAAGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.21, T:0.46
Consensus pattern (13 bp):
TCGTTGACTTTGA
Found at i:876298 original size:96 final size:96
Alignment explanation
Indices: 876183--876379 Score: 279
Period size: 96 Copynumber: 2.1 Consensus size: 96
876173 ACTGATTTAT
* * * * *
876183 TGGTTTATGAACTATGGTTACTTGAAATATGTTCTCTAGTTACCTATTTTCACTGTAAAATATGA
1 TGGTTTATGAACTATGGTTACCTAAAATATGTTATATAGTTACCTATTTTCACTGGAAAATATGA
*
876248 TCG-TTCTTGATTTATGGATCATGAAATCTAC
66 TCGTTTC-TGATTTATGGATCACGAAATCTAC
* * *
876279 TGGTTTATGAACTATGGTTACCTAAAATGTGTTATATGGTTTCCTATTTTCACTGGAAAATATGA
1 TGGTTTATGAACTATGGTTACCTAAAATATGTTATATAGTTACCTATTTTCACTGGAAAATATGA
*
876344 TCGTTTCTGCTTTATGGATCACGAAATCTAC
66 TCGTTTCTGATTTATGGATCACGAAATCTAC
*
876375 CGGTT
1 TGGTT
876380 ATTACTTGAA
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 86 0.97
97 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (96 bp):
TGGTTTATGAACTATGGTTACCTAAAATATGTTATATAGTTACCTATTTTCACTGGAAAATATGA
TCGTTTCTGATTTATGGATCACGAAATCTAC
Found at i:876547 original size:32 final size:32
Alignment explanation
Indices: 876480--876549 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
876470 AAGGTGGCCT
* **
876480 TTGGGTAGGCTCTGAGGCCCCAAGAAACTTTC
1 TTGGGTAGGCTCTCAGGCCCCAAGAAACTCCC
*
876512 TTGGGTAGGCTCTCAGGCCCCAAGACACTCCC
1 TTGGGTAGGCTCTCAGGCCCCAAGAAACTCCC
876544 TTGGGT
1 TTGGGT
876550 TAATAATGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (32 bp):
TTGGGTAGGCTCTCAGGCCCCAAGAAACTCCC
Found at i:880438 original size:28 final size:28
Alignment explanation
Indices: 880396--880460 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
880386 GAAAACCGGG
* ** *
880396 CCGGTTCAACCGGGAACCGTTGTTTAGT
1 CCGGTTCAACAGGGAACCACTGTCTAGT
880424 CCGGTTCAACAGGGAACCACTGTCTAGT
1 CCGGTTCAACAGGGAACCACTGTCTAGT
*
880452 CTGGTTCAA
1 CCGGTTCAA
880461 TCTACACCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (28 bp):
CCGGTTCAACAGGGAACCACTGTCTAGT
Found at i:887721 original size:3 final size:3
Alignment explanation
Indices: 887713--887738 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
887703 TATAATTAAG
887713 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
887739 TAAGATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.