Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008093.1 Hibiscus syriacus cultivar Beakdansim tig00110609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75264

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1812--2015
100
2.0
103
88
5
308
42
8
16
33
1.78
3613--3676
34
1.9
34
87
3
94
26
17
17
39
1.91
3558--3940
191
2.0
193
95
3
695
35
11
14
38
1.82
5017--5059
19
2.3
19
88
8
61
41
18
4
34
1.71
5029--5176
19
7.5
19
75
10
127
39
22
7
30
1.81
5147--5369
112
2.0
112
97
1
421
30
9
8
52
1.63
11139--11203
32
2.0
33
93
3
114
26
12
20
41
1.87
16986--17060
23
3.3
23
98
0
141
44
20
13
22
1.86
17024--17104
34
2.4
34
89
0
117
45
17
14
22
1.84
17081--17127
22
2.1
22
88
0
67
46
10
17
25
1.79
18831--18921
31
2.9
32
83
9
107
32
20
19
26
1.97
23647--23682
18
2.1
18
89
5
56
30
0
5
63
1.17
26478--26549
36
2.0
36
100
0
144
16
8
11
63
1.49
36612--36722
31
3.6
31
96
0
195
40
20
18
19
1.92
36599--36723
31
4.0
31
92
2
189
39
21
18
20
1.93
38075--38115
3
13.7
3
89
0
64
65
0
31
2
1.05
40734--40858
31
4.0
31
93
2
207
39
23
18
19
1.93
43142--43168
14
1.9
14
100
0
54
37
33
0
29
1.58
45858--45924
28
2.4
28
97
0
125
46
14
0
38
1.45
48423--48465
17
2.5
17
92
0
68
32
9
9
48
1.67
48436--48476
17
2.4
17
87
0
55
41
17
7
34
1.77
55833--55878
23
2.0
23
91
8
76
17
19
17
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56439--56549
50
2.2
50
83
0
132
17
36
27
18
1.93
56756--56794
17
2.4
17
91
4
62
30
2
5
61
1.31
59190--59274
35
2.5
33
76
14
82
24
8
10
56
1.60
64118--64156
21
1.9
20
84
5
51
51
5
2
41
1.38
64139--64226
46
2.0
40
83
12
104
51
3
2
43
1.31
64804--64833
2
15.0
2
100
0
60
50
0
0
50
1.00
66451--66493
15
2.8
15
82
6
50
46
2
2
48
1.27
66469--66498
15
2.0
15
100
0
60
53
0
0
46
1.00
66953--66983
3
10.3
3
100
0
62
67
32
0
0
0.91
68330--68363
17
2.0
17
88
0
50
58
0
0
41
0.98
69586--69621
18
2.0
18
100
0
72
5
16
38
38
1.72
69682--69730
3
16.7
3
87
12
75
67
0
0
32
0.91
69878--70142
120
2.2
118
87
3
363
24
18
16
40
1.91
70077--71180
113
9.9
113
91
2
1328
29
18
14
38
1.90
70077--71176
225
4.9
226
89
3
1322
29
18
14
38
1.90
70077--71180
338
3.3
335
86
3
1440
29
18
14
38
1.90
71584--71639
23
2.5
22
80
5
67
35
12
14
37
1.84
72871--73037
74
2.3
74
85
2
210
32
22
14
30
1.94

Tables:   1

The End!