Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9952466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 22 of 43
Found at i:4370774 original size:20 final size:20
Alignment explanation
Indices: 4370751--4370791 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
4370741 TTTATTTTTA
4370751 TTTTATTATATT-ATTAAATAT
1 TTTTA-TATATTCA-TAAATAT
4370772 TTTTATATATTCATAAATAT
1 TTTTATATATTCATAAATAT
4370792 ATATATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTATATATTCATAAATAT
Found at i:4372350 original size:41 final size:41
Alignment explanation
Indices: 4372222--4372367 Score: 116
Period size: 41 Copynumber: 3.5 Consensus size: 41
4372212 TTGGCGGCGT
* * * *
4372222 TTTTTAAACAAACGCCACAATAAAGTGGTAATTTAGCGGCG
1 TTTTTACACAAACGCCGCAATAGAGTGGTAATTTAGCGGCA
* * * * * * *
4372263 TTTATAGCTCAAATGTCGGAATAGAGTTGT--TTATAGTGGCA
1 TTTTTA-CACAAACGCCGCAATAGAGTGGTAATT-TAGCGGCA
*
4372304 TTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCA
1 TTTTTAC-ACAAACGCCGCAATAGAGTGGTAATTTAGCGGCA
* * *
4372346 TTTTTATACGAACGCCGTAATA
1 TTTTTACACAAACGCCGCAATA
4372368 TGGTTGTTTA
Statistics
Matches: 77, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
40 3 0.04
41 45 0.58
42 27 0.35
43 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (41 bp):
TTTTTACACAAACGCCGCAATAGAGTGGTAATTTAGCGGCA
Found at i:4372493 original size:83 final size:82
Alignment explanation
Indices: 4372217--4372503 Score: 274
Period size: 83 Copynumber: 3.5 Consensus size: 82
4372207 ATACTTTGGC
* * *** * *
4372217 GGCGTTT-TTTAAACAAACGCCACAATAAAGTGGTAATTTAGCGGCGTTTATAGCTCAAATGTCG
1 GGCGTTTGTTT-AACAAACGCCACAATAGAGTAGTAATTTAGCGGCGTTTATAAAACAAACGCCG
* *
4372281 GAATAGAGTTGTTTATAGT
65 CAATAGGGTTGTTTA-AGT
* * * * * * *
4372300 GGCATTT-TTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCATTT-TTATACGAACGCCG
1 GGCGTTTGTTT-AACAAACGCCACAATAGAGTAGTAATTTAGCGGCGTTTATAAAACAAACGCCG
* *
4372363 TAATATGGTTGTTTAATGT
65 CAATAGGGTTGTTTAA-GT
* * * *
4372382 GGCGTTTGTTTAACAAACGACACTATAGAGAAGTAATTTAGCGGCGTTTATAAAACAAACGCCAC
1 GGCGTTTGTTTAACAAACGCCACAATAGAGTAGTAATTTAGCGGCGTTTATAAAACAAACGCCGC
4372447 AATAGGGTTGTTTACAGT
66 AATAGGGTTGTTTA-AGT
* * * *
4372465 GGCGTTTGTGTAGCAAACGCCGCAATAGAGTATTAATTT
1 GGCGTTTGTTTAACAAACGCCACAATAGAGTAGTAATTT
4372504 CAAACGCCGC
Statistics
Matches: 165, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
81 1 0.01
82 59 0.36
83 104 0.63
84 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (82 bp):
GGCGTTTGTTTAACAAACGCCACAATAGAGTAGTAATTTAGCGGCGTTTATAAAACAAACGCCGC
AATAGGGTTGTTTAAGT
Found at i:4372982 original size:22 final size:22
Alignment explanation
Indices: 4372956--4373000 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4372946 GTGTTTTTTT
4372956 TTGCTTTCGAATAGAAAAATAA
1 TTGCTTTCGAATAGAAAAATAA
**
4372978 TTGCTTTCGAATAGGGAAATAA
1 TTGCTTTCGAATAGAAAAATAA
4373000 T
1 T
4373001 ATCTTCTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (22 bp):
TTGCTTTCGAATAGAAAAATAA
Found at i:4374290 original size:82 final size:83
Alignment explanation
Indices: 4374022--4374388 Score: 328
Period size: 83 Copynumber: 4.4 Consensus size: 83
4374012 TTATATCAAT
* * * * * * ** * *
4374022 AAACG-CGCAATAGGTTTACTGTATAGTGGTGTTTTTTCAAGAAACGTTGCAAAATATTTTTACT
1 AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGTTCAACAAACGCCGCAAAATATTTATACA
** * * *
4374086 TTTCCTGCATTTTTATAG
66 TTAGCGGCATTTTTGTAC
* *** **
4374104 AAACGCCGCCATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACGCCGCAAAATATTTATATT
1 AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGTTCAACAAACGCCGCAAAATATTTATACA
**
4374169 TTAGCGGTGTTTTTGTAC
66 TTAGCGGCATTTTTGTAC
* *
4374187 AAACGACGCAATAGGTCTAATCTATAGTGGCGTTTTTTCAACAAACGCCGC-AAATATTTATACA
1 AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGTTCAACAAACGCCGCAAAATATTTATACA
*
4374251 TTAGCGGCATGTTTGTAC
66 TTAGCGGCATTTTTGTAC
* * ** * * * * *
4374269 AAACGCCGTAATAGGTGTAATCTATAGTGGCGTTTGTT-ATGTAAACGCTGGAATAGAGTTGA-A
1 AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGTTCA-ACAAACGCCGCAAAATA-TTTATA
* *
4374332 TATTAGCGGCGTTTTTGTAC
64 CATTAGCGGCATTTTTGTAC
* * *
4374352 AAACACCGCAATAGGTGTAATATATAGTGGCGTTTGT
1 AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGT
4374389 CTATGTAAAC
Statistics
Matches: 232, Mismatches: 49, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
81 1 0.00
82 72 0.31
83 156 0.67
84 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (83 bp):
AAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGTTCAACAAACGCCGCAAAATATTTATACA
TTAGCGGCATTTTTGTAC
Found at i:4374300 original size:165 final size:166
Alignment explanation
Indices: 4374022--4374386 Score: 396
Period size: 165 Copynumber: 2.2 Consensus size: 166
4374012 TTATATCAAT
* * * * * ** * *
4374022 AAACG-CGCAATAGGTTTACTGTATAGTGGTGTTTTTTCAAGAAACGTTGCAAAATATTTTTACT
1 AAACGACGCAATAGGTCTAATATATAGTGGCGTTTTTTCAACAAACGCCGCAAAATATTTATACA
* * * * *
4374086 TTTCCTGCATTTTTATAGAAACGCCGCCATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACG
66 TTACCGGCATGTTTATACAAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACG
* * * *
4374151 CCGCAAAATA-TTTATATTTTAGCGGTGTTTTTGTAC
131 CCGCAAAAGAGTTGA-ATATTAGCGGCGTTTTTGTAC
*
4374187 AAACGACGCAATAGGTCTAATCTATAGTGGCGTTTTTTCAACAAACGCCGC-AAATATTTATACA
1 AAACGACGCAATAGGTCTAATATATAGTGGCGTTTTTTCAACAAACGCCGCAAAATATTTATACA
* * * * ** ***
4374251 TTAGCGGCATGTTTGTACAAACGCCGTAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACG
66 TTACCGGCATGTTTATACAAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACG
* * *
4374316 CTGGAATAGAGTTGAATATTAGCGGCGTTTTTGTAC
131 CCGCAAAAGAGTTGAATATTAGCGGCGTTTTTGTAC
*
4374352 AAAC-ACCGCAATAGGTGTAATATATAGTGGCGTTT
1 AAACGA-CGCAATAGGTCTAATATATAGTGGCGTTT
4374387 GTCTATGTAA
Statistics
Matches: 165, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
164 1 0.01
165 123 0.75
166 41 0.25
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (166 bp):
AAACGACGCAATAGGTCTAATATATAGTGGCGTTTTTTCAACAAACGCCGCAAAATATTTATACA
TTACCGGCATGTTTATACAAACGCCGCAATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACG
CCGCAAAAGAGTTGAATATTAGCGGCGTTTTTGTAC
Found at i:4374324 original size:42 final size:42
Alignment explanation
Indices: 4374269--4374408 Score: 142
Period size: 41 Copynumber: 3.3 Consensus size: 42
4374259 ATGTTTGTAC
* *
4374269 AAACGCCGTAATAGGTGTAATCTATAGTGGCGTTTGTTATGT
1 AAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGTTATGT
* * * * **
4374311 AAACGCTGGAATAGAGT-TGAATAT-TAGCGGCGTTT-TTGTAC
1 AAACGCCGCAATAG-GTGT-AATATATAGTGGCGTTTGTTATGT
*
4374352 AAACACCGCAATAGGTGTAATATATAGTGGCGTTTGTCTATGT
1 AAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGT-TATGT
*
4374395 AAACGCCGTAATAG
1 AAACGCCGCAATAG
4374409 AGTTGAATAA
Statistics
Matches: 76, Mismatches: 16, Indels: 11
0.74 0.16 0.11
Matches are distributed among these distances:
40 7 0.09
41 25 0.33
42 24 0.32
43 20 0.26
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
AAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGTTATGT
Found at i:4374366 original size:83 final size:83
Alignment explanation
Indices: 4374095--4374449 Score: 315
Period size: 83 Copynumber: 4.3 Consensus size: 83
4374085 TTTTCCTGCA
* * * * * ** *** * *
4374095 TTTTTATAGAAACGCCGCCATAGGTCTAATCTATAGTGGCGTTTGGAAAACAAACGCCGCAAAAT
1 TTTTTGTACAAACACCGCAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACGCCGCAATAG
* * *
4374160 A-TTTATATTTTAGCGGTG
66 AGTTGA-ATATTAGCGGCG
* * **
4374178 TTTTTGTACAAACGA-CGCAATAGGTCTAATCTATAGTGGCGTTTTTTCA-ACAAACGCCGCAA-
1 TTTTTGTACAAAC-ACCGCAATAGGTGTAATCTATAGTGGCGTTTGTT-ATGTAAACGCCGCAAT
* * * *
4374240 ATA-TTTATACATTAGCGGCA
64 AGAGTTGA-ATATTAGCGGCG
* * * * *
4374260 TGTTTGTACAAACGCCGTAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACGCTGGAATAG
1 TTTTTGTACAAACACCGCAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACGCCGCAATAG
4374325 AGTTGAATATTAGCGGCG
66 AGTTGAATATTAGCGGCG
* *
4374343 TTTTTGTACAAACACCGCAATAGGTGTAATATATAGTGGCGTTTGTCTATGTAAACGCCGTAATA
1 TTTTTGTACAAACACCGCAATAGGTGTAATCTATAGTGGCGTTTGT-TATGTAAACGCCGCAATA
* * *
4374408 GAGTTGAATAATAGAGGTG
65 GAGTTGAATATTAGCGGCG
* *
4374427 TTTTTCTACAAACGCCGCAATAG
1 TTTTTGTACAAACACCGCAATAG
4374450 AGTTGAACAA
Statistics
Matches: 230, Mismatches: 35, Indels: 13
0.83 0.13 0.05
Matches are distributed among these distances:
81 1 0.00
82 66 0.29
83 106 0.46
84 57 0.25
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32
Consensus pattern (83 bp):
TTTTTGTACAAACACCGCAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACGCCGCAATAG
AGTTGAATATTAGCGGCG
Found at i:4374438 original size:84 final size:83
Alignment explanation
Indices: 4374266--4374614 Score: 304
Period size: 83 Copynumber: 4.2 Consensus size: 83
4374256 GGCATGTTTG
* * *
4374266 TACAAACGCCGTAATAGGTGTAATCTATAGTGGCGTTTGTTATGTAAACGCTGGAATAGAGTTGA
1 TACAAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGTTATGTAAACGCCGGAATAGAGTTGA
* * *
4374331 ATATTAGCGGCGTTTTTG
66 ATAATAGAGGCGTTTTTC
* *
4374349 TACAAACACCGCAATAGGTGTAATATATAGTGGCGTTTGTCTATGTAAACGCCGTAATAGAGTTG
1 TACAAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGT-TATGTAAACGCCGGAATAGAGTTG
*
4374414 AATAATAGAGGTGTTTTTC
65 AATAATAGAGGCGTTTTTC
* * *** *
4374433 TACAAACGCCGCAATAGAGT-TGAACA-ATAGTGGCATTT-TTACCCAAACGCCGCG-ATATA-T
1 TACAAACGCCGCAATAG-GTGT-AATATATAGTGGCGTTTGTTATGTAAACGCCG-GAATAGAGT
* *
4374493 CCGCACT-ATAGAGGCGCTTTTT-
63 -TG-AATAATAGAGGCG-TTTTTC
* * ** * *
4374515 TGA-AAAGGCCGCGATATATCG-AA-AGTATAGAGGCGTTTGTTATGTAAACGCCGCAATAGAGT
1 T-ACAAACGCCGCAATAGGT-GTAATA-TATAGTGGCGTTTGTTATGTAAACGCCGGAATAGAGT
* *
4374577 TGAATAATAGAGACATTTTTC
63 TGAATAATAGAGGCGTTTTTC
*
4374598 TACAAACGCCTCAATAG
1 TACAAACGCCGCAATAG
4374615 AGTTGAACAA
Statistics
Matches: 209, Mismatches: 39, Indels: 36
0.74 0.14 0.13
Matches are distributed among these distances:
80 1 0.00
81 4 0.02
82 53 0.25
83 80 0.38
84 66 0.32
85 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (83 bp):
TACAAACGCCGCAATAGGTGTAATATATAGTGGCGTTTGTTATGTAAACGCCGGAATAGAGTTGA
ATAATAGAGGCGTTTTTC
Found at i:4374440 original size:41 final size:41
Alignment explanation
Indices: 4374311--4374638 Score: 197
Period size: 41 Copynumber: 7.9 Consensus size: 41
4374301 TTTGTTATGT
* * * * *
4374311 AAACGCTGGAATAGAGTTGAATATTAGCGGCGTTTTTGTAC
1 AAACGCCGCAATAGAGTTGAATAATAGAGGCGTTTTTCTAC
* * * *
4374352 AAACACCGCAATAG-G-TGTAATATATAGTGGCGTTTGTCTATGT
1 AAACGCCGCAATAGAGTTG-AATA-ATAGAGGCGTTTTTCTA--C
* *
4374395 AAACGCCGTAATAGAGTTGAATAATAGAGGTGTTTTTCTAC
1 AAACGCCGCAATAGAGTTGAATAATAGAGGCGTTTTTCTAC
* * * *
4374436 AAACGCCGCAATAGAGTTGAACAATAGTGGCATTTTTAC-CC
1 AAACGCCGCAATAGAGTTGAATAATAGAGGCGTTTTT-CTAC
* * * *
4374477 AAACGCCGCGATATA-TCCGCACT-ATAGAGGCGCTTTTT-TGA-
1 AAACGCCGCAATAGAGT-TG-AATAATAGAGGCG-TTTTTCT-AC
* * * * * **
4374518 AAAGGCCGCGATATA-TCGAA-AGTATAGAGGCGTTTGTTATGT
1 AAACGCCGCAATAGAGTTGAATA--ATAGAGGCGTTT-TTCTAC
* *
4374560 AAACGCCGCAATAGAGTTGAATAATAGAGACATTTTTCTAC
1 AAACGCCGCAATAGAGTTGAATAATAGAGGCGTTTTTCTAC
* * *
4374601 AAACGCCTCAATAGAGTTGAACAATAGTGGCGATTTTT
1 AAACGCCGCAATAGAGTTGAATAATAGAGGCG-TTTTT
4374639 ACCCAAATGC
Statistics
Matches: 221, Mismatches: 45, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
39 3 0.01
40 11 0.05
41 134 0.61
42 35 0.16
43 30 0.14
44 6 0.03
45 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (41 bp):
AAACGCCGCAATAGAGTTGAATAATAGAGGCGTTTTTCTAC
Found at i:4374575 original size:165 final size:167
Alignment explanation
Indices: 4374374--4374673 Score: 496
Period size: 165 Copynumber: 1.8 Consensus size: 167
4374364 AGGTGTAATA
* * ***
4374374 TATAGTGGCGTTTGTCTATGTAAACGCCGTAATAGAGTTGAATAATAGAGGTGTTTTTCTACAAA
1 TATAGAGGCGTTTGTCTATGTAAACGCCGCAATAGAGTTGAATAATAGAGACATTTTTCTACAAA
* *
4374439 CGCCGCAATAGAGTTGAACAATAGTGGC-ATTTTTACCCAAACGCCGCGATATATCCGCACTATA
66 CGCCGCAATAGAGTTGAACAATAGTGGCGATTTTTACCCAAACGCCACAATATATCCGCACTATA
4374503 GAGGCGCTTTTTTGAAAAGGCCGCGATATATCGAAAG
131 GAGGCGCTTTTTTGAAAAGGCCGCGATATATCGAAAG
4374540 TATAGAGGCGTTTGT-TATGTAAACGCCGCAATAGAGTTGAATAATAGAGACATTTTTCTACAAA
1 TATAGAGGCGTTTGTCTATGTAAACGCCGCAATAGAGTTGAATAATAGAGACATTTTTCTACAAA
* * *
4374604 CGCCTCAATAGAGTTGAACAATAGTGGCGATTTTTACCCAAATGCCACAATATATCTGCACTATA
66 CGCCGCAATAGAGTTGAACAATAGTGGCGATTTTTACCCAAACGCCACAATATATCCGCACTATA
4374669 GAGGC
131 GAGGC
4374674 ATTTTTTTTA
Statistics
Matches: 123, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
165 72 0.59
166 51 0.41
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (167 bp):
TATAGAGGCGTTTGTCTATGTAAACGCCGCAATAGAGTTGAATAATAGAGACATTTTTCTACAAA
CGCCGCAATAGAGTTGAACAATAGTGGCGATTTTTACCCAAACGCCACAATATATCCGCACTATA
GAGGCGCTTTTTTGAAAAGGCCGCGATATATCGAAAG
Found at i:4378742 original size:21 final size:21
Alignment explanation
Indices: 4378724--4378774 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
4378714 ATGAAGCAAG
*
4378724 GGAAGCAGAGAGAGCAGCAGC
1 GGAAGCAGACAGAGCAGCAGC
* *
4378745 GGAAGCAGCCAGAGCAGTAGC
1 GGAAGCAGACAGAGCAGCAGC
*
4378766 AGAAGCAGA
1 GGAAGCAGA
4378775 GAAAGAAGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.39, T:0.02
Consensus pattern (21 bp):
GGAAGCAGACAGAGCAGCAGC
Found at i:4379238 original size:44 final size:44
Alignment explanation
Indices: 4379146--4379341 Score: 225
Period size: 44 Copynumber: 4.4 Consensus size: 44
4379136 TCTGTGTTAT
** * * *
4379146 TTTA-CGGCGTTTGTAT-AAAAAAACACCGCAATATACCATACA
1 TTTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATACCATACC
* * *
4379188 ATTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATGCCAGACC
1 TTTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATACCATACC
*
4379232 TTTAGCGGCGATTGTATCCTAAAAACGCCGCTATATACCATACC
1 TTTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATACCATACC
* * *
4379276 TTTAGCGGCGTTTATATCCTATAATATAAACGCCGCTACATACCTTACC
1 TTTAGCGGCGTTTGTATCC--T-A-A-AAACGCCGCTATATACCATACC
4379325 TTTAGCGGCGTTTGTAT
1 TTTAGCGGCGTTTGTAT
4379342 AAAGAAAACA
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.02
43 12 0.09
44 76 0.58
46 1 0.01
47 1 0.01
48 1 0.01
49 36 0.28
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATACCATACC
Found at i:4379350 original size:93 final size:87
Alignment explanation
Indices: 4379146--4379357 Score: 246
Period size: 93 Copynumber: 2.4 Consensus size: 87
4379136 TCTGTGTTAT
*
4379146 TTTA-CGGCGTTTGTATAAAAAAACACCGCAATATACCATACAATTAGCGGCGTTTGTATCCTAA
1 TTTAGCGGCGTTTGTATAAAAAAACACCGCAATATACCATACAATTAGCGGCGTTTATATCCTAA
* *
4379210 AAACGCCGCTATATGCCAGACC
66 AAACGCCGCTACATACCAGACC
* ** * * **
4379232 TTTAGCGGCGATTGTATCCTAAAAACGCCGCTATATACCATACCTTTAGCGGCGTTTATATCCTA
1 TTTAGCGGCGTTTGTAT-AAAAAAACACCGCAATATACCATACAATTAGCGGCGTTTATATCC--
**
4379297 TAATATAAACGCCGCTACATACCTTACC
63 T-A-A-AAACGCCGCTACATACCAGACC
4379325 TTTAGCGGCGTTTGTATAAAGAAAACACCGCAA
1 TTTAGCGGCGTTTGTATAAA-AAAACACCGCAA
4379358 AATCTCAACA
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
86 4 0.04
87 11 0.11
88 38 0.38
90 1 0.01
91 1 0.01
92 2 0.02
93 44 0.44
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (87 bp):
TTTAGCGGCGTTTGTATAAAAAAACACCGCAATATACCATACAATTAGCGGCGTTTATATCCTAA
AAACGCCGCTACATACCAGACC
Found at i:4379404 original size:43 final size:43
Alignment explanation
Indices: 4379346--4379489 Score: 189
Period size: 43 Copynumber: 3.3 Consensus size: 43
4379336 TTGTATAAAG
* * * *
4379346 AAAACACCGCAAAATCTCAACACCTATTGCAGCGTTTGCGAGA
1 AAAACGCCGCTAAATCTCAACACATATTGCAGCGTTTGTGAGA
* *
4379389 AAAACGCCGCTAAATCTCAACACTTATTGCAGCGTTTGTGATA
1 AAAACGCCGCTAAATCTCAACACATATTGCAGCGTTTGTGAGA
* * *
4379432 AAAACGTCGCTAAATCTCAACACATATTGCGGCGTTTGTAAGA
1 AAAACGCCGCTAAATCTCAACACATATTGCAGCGTTTGTGAGA
* *
4379475 TAAACGCTGCTAAAT
1 AAAACGCCGCTAAAT
4379490 ATCGTTACAT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
AAAACGCCGCTAAATCTCAACACATATTGCAGCGTTTGTGAGA
Found at i:4379510 original size:86 final size:86
Alignment explanation
Indices: 4379357--4379529 Score: 197
Period size: 86 Copynumber: 2.0 Consensus size: 86
4379347 AAACACCGCA
* * * * *
4379357 AAATCTCAACACCTATTGCAGCGTTTGCGAGAAAAACGCCGCTAAATCTCAACACTTATTGCAGC
1 AAATCTCAACACATATTGCAGCGTTTGCAAGAAAAACGCCGCTAAATATCAACACATATAGCAGC
4379422 GTTTGTGAT-AA-AAACGTCGCT
66 GTTTGT--TCAACAAACGTCGCT
* * * * *** *
4379443 AAATCTCAACACATATTGCGGCGTTTGTAAGATAAACGCTGCTAAATATCGTTACATATAGCGGC
1 AAATCTCAACACATATTGCAGCGTTTGCAAGAAAAACGCCGCTAAATATCAACACATATAGCAGC
4379508 GTTTGTTCAACAAACGTCGCT
66 GTTTGTTCAACAAACGTCGCT
4379529 A
1 A
4379530 TATATCCTTT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
84 1 0.01
85 2 0.03
86 69 0.96
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (86 bp):
AAATCTCAACACATATTGCAGCGTTTGCAAGAAAAACGCCGCTAAATATCAACACATATAGCAGC
GTTTGTTCAACAAACGTCGCT
Found at i:4379598 original size:15 final size:15
Alignment explanation
Indices: 4379578--4379616 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
4379568 CGCCGCGAAC
4379578 TTTAGCGGCACTATT
1 TTTAGCGGCACTATT
4379593 TTTAGCGGCACTATT
1 TTTAGCGGCACTATT
4379608 TTTAGCGGC
1 TTTAGCGGC
4379617 GTTTGTCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (15 bp):
TTTAGCGGCACTATT
Found at i:4380631 original size:29 final size:29
Alignment explanation
Indices: 4380589--4380646 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
4380579 TCAAAGAATG
4380589 ATCTCGTCCTTTAATCCTTACAGAGCTGT
1 ATCTCGTCCTTTAATCCTTACAGAGCTGT
4380618 ATCTCGTCCTTTAATCCTTACAGAGCTGT
1 ATCTCGTCCTTTAATCCTTACAGAGCTGT
4380647 TTTTATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.38
Consensus pattern (29 bp):
ATCTCGTCCTTTAATCCTTACAGAGCTGT
Found at i:4380945 original size:28 final size:28
Alignment explanation
Indices: 4380909--4380978 Score: 68
Period size: 32 Copynumber: 2.4 Consensus size: 28
4380899 AGATAAATCA
*
4380909 AATATAATGAAAAAAGAAAAAGAAAATT
1 AATAAAATGAAAAAAGAAAAAGAAAATT
* *
4380937 AATAAAATGAGTAAAAAAAGAAAACGTAAATT
1 AATAAAAT--G--AAAAAAGAAAAAGAAAATT
*
4380969 AAGAAAATGA
1 AATAAAATGA
4380979 GTAACATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
28 8 0.24
30 2 0.06
32 24 0.71
ACGTcount: A:0.69, C:0.01, G:0.13, T:0.17
Consensus pattern (28 bp):
AATAAAATGAAAAAAGAAAAAGAAAATT
Found at i:4380959 original size:32 final size:32
Alignment explanation
Indices: 4380918--4380982 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
4380908 AAATATAATG
*
4380918 AAAAAAGAAAAAGAAAATTAATAAAATGAGTA
1 AAAAAAGAAAAAGAAAATTAAGAAAATGAGTA
* *
4380950 AAAAAAGAAAACGTAAATTAAGAAAATGAGTA
1 AAAAAAGAAAAAGAAAATTAAGAAAATGAGTA
4380982 A
1 A
4380983 CATAATTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.15
Consensus pattern (32 bp):
AAAAAAGAAAAAGAAAATTAAGAAAATGAGTA
Found at i:4385087 original size:64 final size:65
Alignment explanation
Indices: 4385008--4385133 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 65
4384998 ACAGGTTTGA
* *
4385008 TTCAGCACTATAGTGTGCAAGGACAC-AGTGCAGGCGGTGGGCACGACCTTATGTGTCATATTGC
1 TTCAGCACTATAGTGTGCAAGGACACTAATGCAGGCAGTGGGCACGACCTTATGTGTCATATTGC
* * *
4385072 TTCAGCACTATAGTGTGCAAGGATACTTAATGCATGTAGTGGGCACGACCTTATGTGTCATA
1 TTCAGCACTATAGTGTGCAAGGACAC-TAATGCAGGCAGTGGGCACGACCTTATGTGTCATA
4385134 GCACTACGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 25 0.45
66 30 0.55
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (65 bp):
TTCAGCACTATAGTGTGCAAGGACACTAATGCAGGCAGTGGGCACGACCTTATGTGTCATATTGC
Found at i:4395366 original size:17 final size:17
Alignment explanation
Indices: 4395339--4395384 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
4395329 TGTGAGGTTT
4395339 TTTTGTAAGTTTGCGAAA
1 TTTT-TAAGTTTGCGAAA
4395357 TTTTTAAGTTTGCGAAA
1 TTTTTAAGTTTGCGAAA
*
4395374 TTTGTAAGTTT
1 TTTTTAAGTTT
4395385 TCTCTTTCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.26, C:0.04, G:0.20, T:0.50
Consensus pattern (17 bp):
TTTTTAAGTTTGCGAAA
Found at i:4397279 original size:15 final size:15
Alignment explanation
Indices: 4397259--4397294 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
4397249 ATACCAAAGC
4397259 GGACTAGAATTTTAG
1 GGACTAGAATTTTAG
4397274 GGACTAGAATTTTAG
1 GGACTAGAATTTTAG
4397289 GGACTA
1 GGACTA
4397295 ATGAATATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (15 bp):
GGACTAGAATTTTAG
Found at i:4402155 original size:23 final size:23
Alignment explanation
Indices: 4402129--4402200 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
4402119 GCTCGTAAGC
4402129 TTATTTTACCAAAATACTTATCA
1 TTATTTTACCAAAATACTTATCA
** * *
4402152 TTA--TT-CCGTAA-GCTTATAA
1 TTATTTTACCAAAATACTTATCA
4402171 GCTTATTTTACCAAAATACTTATCA
1 --TTATTTTACCAAAATACTTATCA
4402196 TTATT
1 TTATT
4402201 CCGTAAGCTC
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
19 6 0.17
20 4 0.11
21 5 0.14
23 10 0.29
24 4 0.11
25 6 0.17
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (23 bp):
TTATTTTACCAAAATACTTATCA
Found at i:4402172 original size:44 final size:44
Alignment explanation
Indices: 4402116--4402222 Score: 196
Period size: 44 Copynumber: 2.4 Consensus size: 44
4402106 ATTTATCCCA
*
4402116 TAAGCTCGTAAGCTTATTTTACCAAAATACTTATCATTATTCCG
1 TAAGCTCATAAGCTTATTTTACCAAAATACTTATCATTATTCCG
*
4402160 TAAGCTTATAAGCTTATTTTACCAAAATACTTATCATTATTCCG
1 TAAGCTCATAAGCTTATTTTACCAAAATACTTATCATTATTCCG
4402204 TAAGCTCATAAGCTTATTT
1 TAAGCTCATAAGCTTATTT
4402223 GCATGGTTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (44 bp):
TAAGCTCATAAGCTTATTTTACCAAAATACTTATCATTATTCCG
Found at i:4406856 original size:6 final size:6
Alignment explanation
Indices: 4406840--4406936 Score: 60
Period size: 6 Copynumber: 16.3 Consensus size: 6
4406830 TCTCTCATTT
* * * *
4406840 TTTTCTC TTTTTC -TTTTC TTTCTC ATTTTC -ATTT- TTTTTC TTCTTC
1 TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
* * *
4406886 GTTTTC ATTTTC TTTTTC TATTTT- TTTTTC TTCTTC TGTTTT- TTTCTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC T-TTTTC TTT-TTC
4406935 TT
1 TT
4406937 CTTATAATAT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
5 17 0.24
6 40 0.57
7 13 0.19
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:4406875 original size:34 final size:33
Alignment explanation
Indices: 4406834--4406932 Score: 110
Period size: 34 Copynumber: 2.8 Consensus size: 33
4406824 TTTTCATCTC
*
4406834 TCATTTTTTTCTCTTTTTCTTTTCTTTCTCATTT
1 TCATTTTTTT-TCTTCTTCTTTTCTTTCTCATTT
*
4406868 TCATTTTTTTTCTTCTTCGTTTTCATTT-TCTTTT
1 TCATTTTTTTTCTTCTTC-TTTTC-TTTCTCATTT
*
4406902 TCTATTTTTTTTTCTTCTTCTGTTTTTTTCT
1 TC-A-TTTTTTTTCTTCTTCT-TTTCTTTCT
4406933 TCTTCTTATA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
33 7 0.12
34 22 0.39
35 8 0.14
36 19 0.34
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (33 bp):
TCATTTTTTTTCTTCTTCTTTTCTTTCTCATTT
Found at i:4406881 original size:22 final size:23
Alignment explanation
Indices: 4406848--4406901 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
4406838 TTTTTTCTCT
4406848 TTTTCTTTTCTT-TCTCATTTTCA
1 TTTTCTTTTCTTCT-TCATTTTCA
*
4406871 TTTT-TTTTCTTCTTCGTTTTCA
1 TTTTCTTTTCTTCTTCATTTTCA
4406893 TTTTCTTTT
1 TTTTCTTTT
4406902 TCTATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.06, C:0.19, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTCTTTTCTTCTTCATTTTCA
Found at i:4406928 original size:18 final size:18
Alignment explanation
Indices: 4406871--4406939 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
4406861 CTCATTTTCA
4406871 TTTTTTTTCTTCTTC-GT
1 TTTTTTTTCTTCTTCTGT
* * *
4406888 TTTCATTTTCTTTTTCTAT
1 TTT-TTTTTCTTCTTCTGT
4406907 TTTTTTTTCTTCTTCTGT
1 TTTTTTTTCTTCTTCTGT
4406925 TTTTTTCTTCTTCTT
1 TTTTTT-TTCTTCTT
4406940 ATAATATATA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
17 3 0.07
18 28 0.65
19 12 0.28
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTTTTTTCTTCTTCTGT
Found at i:4407904 original size:6 final size:6
Alignment explanation
Indices: 4407887--4407929 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
4407877 ACACTTGTAT
*
4407887 CATGAC CGTGAC CATGAC CATGAC CATGAC CATGAC CATGAC C
1 CATGAC CATGAC CATGAC CATGAC CATGAC CATGAC CATGAC C
4407930 TATGGGTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (6 bp):
CATGAC
Found at i:4421634 original size:2 final size:2
Alignment explanation
Indices: 4421627--4421653 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4421617 TCAATCTACA
4421627 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4421654 ATTCACGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4421834 original size:85 final size:85
Alignment explanation
Indices: 4421676--4421850 Score: 271
Period size: 85 Copynumber: 2.1 Consensus size: 85
4421666 CAATTACGAT
* *
4421676 ACACGAATATGTGTCATTTTCATTTATGACAGGGGCTTCAATGACACGCAATGTAAGTCATAAAT
1 ACACAAATATGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGTAAGTCATAAAT
**
4421741 GCGTGTCATAAATTTATGAC
66 GCACGTCATAAATTTATGAC
* *
4421761 ACACAAATGTGTGTCATCTTCATTTATGAC-GAGGGCTTCAATGACGCGCAATGTAAGTCATAAA
1 ACACAAATATGTGTCATCTTCATTTATGACAG-GGGCTTCAATGACACGCAATGTAAGTCATAAA
4421825 TGCACGTCATAAATTTATGAC
65 TGCACGTCATAAATTTATGAC
*
4421846 GCACA
1 ACACA
4421851 GTTGCGCGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
84 1 0.01
85 81 0.99
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (85 bp):
ACACAAATATGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGTAAGTCATAAAT
GCACGTCATAAATTTATGAC
Found at i:4422057 original size:44 final size:44
Alignment explanation
Indices: 4421974--4422169 Score: 214
Period size: 44 Copynumber: 4.4 Consensus size: 44
4421964 GATTTCTTAT
* * *
4421974 CAATATACGTACCATTTAA-TCCATTAGCTCGTAAACTTATTTTAC
1 CAATATACTTACCA--TAATTCCATAAGCTCGTAAGCTTATTTTAC
*
4422019 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATAATTCCATAAGCTCGTAAGCTTATTTTAC
* * * ** * *
4422063 CGATATACTTTCTATAATTTGATATGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATAATTCCATAAGCTCGTAAGCTTATTTTAC
* * * * *
4422107 CAATATACATACTATAATTTCATAAGCTCCTAAGCTTATTTTAA
1 CAATATACTTACCATAATTCCATAAGCTCGTAAGCTTATTTTAC
*
4422151 CAATATACTTACTATAATT
1 CAATATACTTACCATAATT
4422170 TACATCACTA
Statistics
Matches: 130, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
43 2 0.02
44 115 0.88
45 13 0.10
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.41
Consensus pattern (44 bp):
CAATATACTTACCATAATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:4422170 original size:44 final size:44
Alignment explanation
Indices: 4421999--4422170 Score: 236
Period size: 44 Copynumber: 3.9 Consensus size: 44
4421989 TTAATCCATT
* * * *
4421999 AGCTCGTAAACTTATTTTACCAATATACTTACCATTATTCCATA
1 AGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTTCATA
* * *
4422043 AGCTCGTAAGCTTATTTTACCGATATACTTTCTATAATTTGATA
1 AGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTTCATA
* * *
4422087 TGCTCGTAAGCTTATTTTATCAATATACATACTATAATTTCATA
1 AGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTTCATA
* *
4422131 AGCTCCTAAGCTTATTTTAACAATATACTTACTATAATTT
1 AGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
4422171 ACATCACTAA
Statistics
Matches: 111, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 111 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (44 bp):
AGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTTCATA
Found at i:4423012 original size:59 final size:60
Alignment explanation
Indices: 4422321--4422991 Score: 648
Period size: 59 Copynumber: 11.3 Consensus size: 60
4422311 ATGTCCTCCT
* * ** *
4422321 CATTTTAGCACACGA-AGTGC-CC-TATGCGAGAATCCATAC-CATTAGTATGATTCATTTAA
1 CATTTTAGCACACTATAGTGCTCCATATG-GA-AATCCATACAC-TCAGTATGATTCCCTTAC
* * *
4422380 CATTTTAGCACA-TGA-AGTGC-CCTATATGAAAATCCATACTA-TTAGTATGATTTCCTTATC
1 CATTTTAGCACACT-ATAGTGCTCC-ATATGGAAATCCATAC-ACTCAGTATGATTCCCTTA-C
* * * *** *
4422440 C-TTGTAGCACCCT-TAATGCTTTTTCTGGAAATCCATACACTCAGTATGATTCCCTTAC
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * * * *
4422498 CATTTTAGCACA-TATAATGATG-TCCTATATGGAAATCCATATATTCAATATGATTTCCTTAT
1 CATTTTAGCACACTAT-A-G-TGCTCC-ATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* ** * *
4422560 CATTTTAGCACACT-CAGTAATCCATATGGAAATCCATACACTCAGTATGATTTCCTTAT
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * *
4422619 CATTTTAGCACACTCAGAGT--TCCATATGAAAATTCATACACTCAGTATGATTCCCTTAC
1 CATTTTAGCACACT-ATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* *
4422678 CATTTTAGCACACT-TAGTGCTCCATATGGAAATTCATACACTCAATATGATTCCCTTAC
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * * * * * *
4422737 CATTTTAGCACA-TATAATGC-CCTATCTGGAAATCCATATATTCAATATGATTTCCTTAT
1 CATTTTAGCACACTATAGTGCTCC-ATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * * *
4422796 CATTTTAGCACACT-CAGTGCTCCATATGGAAATCCATACACTCAATATGATTTCCTTAT
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * *
4422855 CATTTTAGCACACT-CAGTGCTCCATATGGGAATTCATACACTCAGTATGATTCCCTTAC
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * *
4422914 CATTTTAGCACACT-CAGTGCCCCATATGGAAATTCATACACTCAGTATGATTCCCTTAC
1 CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
4422973 CATTTTAGCACA-TATAGTG
1 CATTTTAGCACACTATAGTG
4422992 TCATTTGGTA
Statistics
Matches: 524, Mismatches: 61, Indels: 54
0.82 0.10 0.08
Matches are distributed among these distances:
57 3 0.01
58 8 0.02
59 449 0.86
60 11 0.02
61 9 0.02
62 43 0.08
63 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.35
Consensus pattern (60 bp):
CATTTTAGCACACTATAGTGCTCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
Found at i:4426801 original size:12 final size:12
Alignment explanation
Indices: 4426784--4426808 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4426774 GCATCGATGC
4426784 ACTGCTACAGTA
1 ACTGCTACAGTA
4426796 ACTGCTACAGTA
1 ACTGCTACAGTA
4426808 A
1 A
4426809 TTTCCGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (12 bp):
ACTGCTACAGTA
Found at i:4427324 original size:89 final size:89
Alignment explanation
Indices: 4427198--4427445 Score: 259
Period size: 89 Copynumber: 2.7 Consensus size: 89
4427188 GATTTCTTAT
* *
4427198 CAATATACATACCATTTAATCCATAAGCTCATAAGCTTATTTTACCAATATACTTACCATTAAAT
1 CAATATACTTACCATTTAATCAATAAGCTCATAAGCTTATTTTACCAATATACTTACCA-T-AAT
* *
4427263 CTC-TAAGCTTGTAAGCTTATTTTAC
64 CTCATAAGCTCGTAAGCTTATTTAAC
* * * * *
4427288 CAATATACTTACCA-TTATTCAATAAGCTCTTAAGCTTATTTTACCAATATACTTTCTATAATTT
1 CAATATACTTACCATTTAATCAATAAGCTCATAAGCTTATTTTACCAATATACTTACCATAATCT
*
4427352 CATAAGCTCGTAAGCTTATTTAAT
66 CATAAGCTCGTAAGCTTATTTAAC
* * *
4427376 CAATATACTTACTATAATTTCATAATTTC-ATAAGCTCGTAAGCTTATTTTATCAATATACTTAC
1 CAATATACTTAC---CA-TT--TAA--TCAATAAGCTCATAAGCTTATTTTACCAATATACTTAC
*
4427440 TATAAT
58 CATAAT
4427446 TTATATCACT
Statistics
Matches: 133, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
87 5 0.04
88 32 0.24
89 39 0.29
90 13 0.10
91 1 0.01
93 1 0.01
95 2 0.02
96 38 0.29
97 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (89 bp):
CAATATACTTACCATTTAATCAATAAGCTCATAAGCTTATTTTACCAATATACTTACCATAATCT
CATAAGCTCGTAAGCTTATTTAAC
Found at i:4427391 original size:44 final size:44
Alignment explanation
Indices: 4427219--4427447 Score: 246
Period size: 44 Copynumber: 5.0 Consensus size: 44
4427209 CCATTTAATC
* * *
4427219 CATAAGCTCATAAGCTTATTTTACCAATATACTTACCATTAAATCT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTA-T-AATTT
* * *
4427265 C-TAAGCTTGTAAGCTTATTTTACCAATATACTTACCATTA-TT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
* *
4427307 CAATAAGCTCTTAAGCTTATTTTACCAATATACTTTCTATAATTT
1 C-ATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
* *
4427352 CATAAGCTCGTAAGCTTATTTAATCAATATACTTACTATAATTTCATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTAC-------T-ATAATTT
*
4427404 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
4427448 ATATCACTGA
Statistics
Matches: 158, Mismatches: 14, Indels: 24
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 73 0.46
45 38 0.24
46 1 0.01
51 1 0.01
52 42 0.27
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42
Consensus pattern (44 bp):
CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
Found at i:4427406 original size:52 final size:53
Alignment explanation
Indices: 4427335--4427447 Score: 201
Period size: 52 Copynumber: 2.2 Consensus size: 53
4427325 ATTTTACCAA
*
4427335 TATACTTTCTATAATTTCATAAGCTCGTAAGCTTATTTAATCAATATACTTAC
1 TATAATTTCTATAATTTCATAAGCTCGTAAGCTTATTTAATCAATATACTTAC
*
4427388 TATAATTTC-ATAATTTCATAAGCTCGTAAGCTTATTTTATCAATATACTTAC
1 TATAATTTCTATAATTTCATAAGCTCGTAAGCTTATTTAATCAATATACTTAC
4427440 TATAATTT
1 TATAATTT
4427448 ATATCACTGA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 50 0.86
53 8 0.14
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (53 bp):
TATAATTTCTATAATTTCATAAGCTCGTAAGCTTATTTAATCAATATACTTAC
Found at i:4427647 original size:59 final size:59
Alignment explanation
Indices: 4427584--4427712 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 59
4427574 ATATACTTAA
* *
4427584 TATGATTTCCTCCT-CA-TTTTAGCACACGAGGTGCCCTATGCGAGAATCCATACCATTAG
1 TATGATTTCCT-CTACATTTTTAGCACACGAAGTGCCCTATACGA-AATCCATACCATTAG
* * * * *
4427643 TATGA-TTCCTTTACCATTTTTAGCACATGAAGTTCCCTATATGAAATCCATACTATTAG
1 TATGATTTCCTCTA-CATTTTTAGCACACGAAGTGCCCTATACGAAATCCATACCATTAG
4427702 TATGATTTCCT
1 TATGATTTCCT
4427713 TATCCTTGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
57 1 0.02
58 5 0.08
59 26 0.44
60 27 0.46
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (59 bp):
TATGATTTCCTCTACATTTTTAGCACACGAAGTGCCCTATACGAAATCCATACCATTAG
Found at i:4427681 original size:60 final size:60
Alignment explanation
Indices: 4427600--4427713 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
4427590 TTCCTCCTCA
* *
4427600 TTTTAGCACACGAGGTGCCCTATGCGAGAATCCATACCATTAGTATGA-TTCCTTTACCAT
1 TTTTAGCACACGAAGTGCCCTATACGA-AATCCATACCATTAGTATGATTTCCTTTACCAT
* * * *
4427660 TTTTAGCACATGAAGTTCCCTATATGAAATCCATACTATTAGTATGATTTCCTT
1 TTTTAGCACACGAAGTGCCCTATACGAAATCCATACCATTAGTATGATTTCCTT
4427714 ATCCTTGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 19 0.40
60 28 0.60
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (60 bp):
TTTTAGCACACGAAGTGCCCTATACGAAATCCATACCATTAGTATGATTTCCTTTACCAT
Found at i:4427864 original size:59 final size:59
Alignment explanation
Indices: 4427742--4427868 Score: 143
Period size: 59 Copynumber: 2.2 Consensus size: 59
4427732 GTGCTTTTTC
* *
4427742 TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACATATAATGCCCTATC
1 TGGAAATCCATACACTCAGTACGATTCCCTTACCATTTTAGCACATATAATGCCCTATA
* * * * *
4427801 TGGAAATCCATATATTCTA-TACGATTTCCTTATCATTTTAGCACACT-TAGTGCTCC-ATA
1 TGGAAATCCATACACTC-AGTACGATTCCCTTACCATTTTAGCACA-TATAATGC-CCTATA
4427860 TGGAAATCC
1 TGGAAATCC
4427869 TTATCATTTG
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 54 0.93
60 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (59 bp):
TGGAAATCCATACACTCAGTACGATTCCCTTACCATTTTAGCACATATAATGCCCTATA
Found at i:4427864 original size:118 final size:117
Alignment explanation
Indices: 4427560--4427868 Score: 294
Period size: 118 Copynumber: 2.6 Consensus size: 117
4427550 TCTCAGTGCT
* ** *
4427560 CTATCTGGAATAT-CATATACTTAATATGATTTCCTCCTCATTTTAGCACAC-GAGGTGC-CCTA
1 CTATCTGGAA-ATCCATATA-TTTATATGATTTCCTTATCATTTTAGCACACTTA-GTGCTCCTA
* * * *
4427622 TGCGAGAATCCATACCATTAGTATGATTCCTTTACCATTTTTAGCACATGAAGTTCC
63 TG-GA-AATCCATACCATCAGTATGATTCCCTTACCATTTTTAGCACATGAAATGCC
* * * * **
4427679 CTATAT-GAAATCCATACTA-TTAGTATGATTTCCTTATCCTTGT-GTCACCCTTAGTGCTTTTT
1 CTATCTGGAAATCCATA-TATTTA-TATGATTTCCTTATCATTTTAG-CACACTTAGTGC-TCCT
*
4427741 CTGGAAATCCATA-CACTCAGTATGATTCCCTTACCA-TTTTAGCACAT-ATAATGCC
62 ATGGAAATCCATACCA-TCAGTATGATTCCCTTACCATTTTTAGCACATGA-AATGCC
*
4427796 CTATCTGGAAATCCATATATTCTATACGATTTCCTTATCATTTTAGCACACTTAGTGCTCCATAT
1 CTATCTGGAAATCCATATATT-TATATGATTTCCTTATCATTTTAGCACACTTAGTGCTCC-TAT
4427861 GGAAATCC
64 GGAAATCC
4427869 TTATCATTTG
Statistics
Matches: 153, Mismatches: 23, Indels: 29
0.75 0.11 0.14
Matches are distributed among these distances:
116 1 0.01
117 30 0.20
118 106 0.69
119 13 0.08
120 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.37
Consensus pattern (117 bp):
CTATCTGGAAATCCATATATTTATATGATTTCCTTATCATTTTAGCACACTTAGTGCTCCTATGG
AAATCCATACCATCAGTATGATTCCCTTACCATTTTTAGCACATGAAATGCC
Found at i:4433238 original size:35 final size:35
Alignment explanation
Indices: 4433168--4433238 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
4433158 CTTCAATGGC
* * *
4433168 TATTCACTCCCAATATTCAACCCATTTTGTTCAGT
1 TATTCACTCCCAATATTCAACCCATTGTCTGCAGT
4433203 TATTCACTCCCAATATTCAACCCATTGTCTGCAGT
1 TATTCACTCCCAATATTCAACCCATTGTCTGCAGT
4433238 T
1 T
4433239 TTTGATTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.38
Consensus pattern (35 bp):
TATTCACTCCCAATATTCAACCCATTGTCTGCAGT
Found at i:4433397 original size:29 final size:30
Alignment explanation
Indices: 4433351--4433408 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
4433341 TTGTTCCCCA
* * *
4433351 CTCGATCGTTGTTCCCCCCTTGCTGCAGAC
1 CTCGATCGCTATTCCCCCCTTACTGCAGAC
4433381 CTCGATCGCTATT-CCCCCTTACTGCAGA
1 CTCGATCGCTATTCCCCCCTTACTGCAGA
4433409 GCTTGTGTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.14, C:0.40, G:0.17, T:0.29
Consensus pattern (30 bp):
CTCGATCGCTATTCCCCCCTTACTGCAGAC
Found at i:4433806 original size:21 final size:22
Alignment explanation
Indices: 4433755--4433816 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
4433745 TGTATATGTA
* *
4433755 TGTATGTTATGAATTTGCTGTT
1 TGTATGTTATGAATTTGTTATT
4433777 TGTATGTTATGAATTTGTTATT
1 TGTATGTTATGAATTTGTTATT
*
4433799 TG-ATGTTATGTATTTGTT
1 TGTATGTTATGAATTTGTT
4433817 GTGTATGCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 15 0.41
22 22 0.59
ACGTcount: A:0.19, C:0.02, G:0.21, T:0.58
Consensus pattern (22 bp):
TGTATGTTATGAATTTGTTATT
Found at i:4434974 original size:57 final size:57
Alignment explanation
Indices: 4434894--4435052 Score: 282
Period size: 57 Copynumber: 2.8 Consensus size: 57
4434884 TGTCAGAAAT
4434894 ATTATATGGTTTTGTGGTCTATGTTAGAAATATTATATGGTTTGTCGATGTTCAAAAC
1 ATTATATGG-TTTGTGGTCTATGTTAGAAATATTATATGGTTTGTCGATGTTCAAAAC
* * *
4434952 ATTATATGGTTTGTGGTTTATGTTAGAAATATTATATGGTTTTTCGATGTTTAAAAC
1 ATTATATGGTTTGTGGTCTATGTTAGAAATATTATATGGTTTGTCGATGTTCAAAAC
4435009 ATTATATGGTTTGTGGTCTATGTTAGAAATATTATATGGTTTGT
1 ATTATATGGTTTGTGGTCTATGTTAGAAATATTATATGGTTTGT
4435053 ATTAAAGTTA
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 87 0.91
58 9 0.09
ACGTcount: A:0.27, C:0.04, G:0.21, T:0.48
Consensus pattern (57 bp):
ATTATATGGTTTGTGGTCTATGTTAGAAATATTATATGGTTTGTCGATGTTCAAAAC
Found at i:4434986 original size:30 final size:30
Alignment explanation
Indices: 4434882--4435052 Score: 205
Period size: 30 Copynumber: 5.9 Consensus size: 30
4434872 TTTTTTTAAT
*
4434882 TATGTCAGAAATATTATATGGTTTTGTGGTC
1 TATGTTAGAAATATTATATGG-TTTGTGGTC
4434913 TATGTTAGAAATATTATATGG-TT-T-GTC
1 TATGTTAGAAATATTATATGGTTTGTGGTC
* * *
4434940 GATGTTCA-AAACATTATATGGTTTGTGGTT
1 TATGTT-AGAAATATTATATGGTTTGTGGTC
4434970 TATGTTAGAAATATTATATGGTTT-T--TC
1 TATGTTAGAAATATTATATGGTTTGTGGTC
* *
4434997 GATGTTTA-AAACATTATATGGTTTGTGGTC
1 TATG-TTAGAAATATTATATGGTTTGTGGTC
4435027 TATGTTAGAAATATTATATGGTTTGT
1 TATGTTAGAAATATTATATGGTTTGT
4435053 ATTAAAGTTA
Statistics
Matches: 119, Mismatches: 11, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
27 39 0.33
28 8 0.07
29 8 0.07
30 44 0.37
31 20 0.17
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.47
Consensus pattern (30 bp):
TATGTTAGAAATATTATATGGTTTGTGGTC
Found at i:4436402 original size:31 final size:31
Alignment explanation
Indices: 4436365--4436423 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
4436355 AGTTGTATGG
*
4436365 ATTATTTAAATTTCAATATTGTAAAACTAAA
1 ATTATTTAAATTTCAATATTGCAAAACTAAA
*
4436396 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAATATTGCAAAACT
4436424 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAATATTGCAAAACTAAA
Found at i:4437154 original size:11 final size:12
Alignment explanation
Indices: 4437130--4437158 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
4437120 ACTAACACTA
4437130 TATATTATATAC
1 TATATTATATAC
4437142 TATATTA-ATAC
1 TATATTATATAC
4437153 TATATT
1 TATATT
4437159 TGAAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
TATATTATATAC
Found at i:4438778 original size:13 final size:13
Alignment explanation
Indices: 4438760--4438794 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
4438750 CTTTGGATTC
*
4438760 TTCTTTTTTCTTT
1 TTCTTTTTTCTAT
4438773 TTC-TTTTTCTAT
1 TTCTTTTTTCTAT
4438785 TTCTTTTTTC
1 TTCTTTTTTC
4438795 AATATAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (13 bp):
TTCTTTTTTCTAT
Found at i:4447493 original size:21 final size:21
Alignment explanation
Indices: 4447310--4447498 Score: 99
Period size: 21 Copynumber: 8.8 Consensus size: 21
4447300 GCCATATAAA
* *
4447310 ATGTCCCGAAGGACCACGTAGAA
1 ATGTCCCGAAGGACCAC--ATAT
* *
4447333 ATGTCCCGAATGATCACATAT
1 ATGTCCCGAAGGACCACATAT
* * * * *
4447354 AAGTCCTGAAGTACCACCTAG
1 ATGTCCCGAAGGACCACATAT
* * * *
4447375 ATGGCCCAAATGACCACATAGA
1 ATGTCCCGAAGGACCACATA-T
* * * *
4447397 ATTGTCTCTAAGAACCATATAT
1 A-TGTCCCGAAGGACCACATAT
* * * *
4447419 ATGTTCCAAATGACCAAATAT
1 ATGTCCCGAAGGACCACATAT
* * *
4447440 ATGTCCCGAATGACCGCATTT
1 ATGTCCCGAAGGACCACATAT
* *
4447461 ATGTTCCAAAGGACCACATAT
1 ATGTCCCGAAGGACCACATAT
*
4447482 ATATCCCGAAGGACCAC
1 ATGTCCCGAAGGACCAC
4447499 GTAGAACCAT
Statistics
Matches: 119, Mismatches: 45, Indels: 6
0.70 0.26 0.04
Matches are distributed among these distances:
21 89 0.75
22 2 0.02
23 28 0.24
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (21 bp):
ATGTCCCGAAGGACCACATAT
Found at i:4448274 original size:21 final size:20
Alignment explanation
Indices: 4448227--4448280 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
4448217 AAGTTATTAA
* *
4448227 TGGTATTGATACTAGATCCT
1 TGGTATCGATACTACATCCT
4448247 TGGTATCGATACTACATCCT
1 TGGTATCGATACTACATCCT
4448267 TAGGTATCGATACT
1 T-GGTATCGATACT
4448281 TTTTGAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (20 bp):
TGGTATCGATACTACATCCT
Found at i:4453714 original size:20 final size:20
Alignment explanation
Indices: 4453671--4453707 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4453661 TCTAAATCCT
*
4453671 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATTTCATTTTGC
4453691 TTTTCAAAATTT-ATTTT
1 TTTTCAAAATTTCATTTT
4453708 ATCTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTCAAAATTTCATTTTGC
Found at i:4454852 original size:11 final size:11
Alignment explanation
Indices: 4454836--4454865 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
4454826 TTTCTAGCCA
*
4454836 TTGGAGGTGTT
1 TTGGAGGCGTT
4454847 TTGGAGGCGTT
1 TTGGAGGCGTT
4454858 TTGGAGGC
1 TTGGAGGC
4454866 ATAGGAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.07, G:0.47, T:0.37
Consensus pattern (11 bp):
TTGGAGGCGTT
Found at i:4464936 original size:21 final size:22
Alignment explanation
Indices: 4464893--4464939 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
4464883 TCTAGAATTT
*
4464893 ATTTTATTTTTGAATATTGATAA
1 ATTTTACTTTTG-ATATTGATAA
*
4464916 ATTTTACTTTTG-TATTTATAA
1 ATTTTACTTTTGATATTGATAA
4464937 ATT
1 ATT
4464940 GTTTTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
23 11 0.50
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (22 bp):
ATTTTACTTTTGATATTGATAA
Found at i:4466490 original size:25 final size:25
Alignment explanation
Indices: 4466458--4466512 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
4466448 ATCTCGGAAG
4466458 AAATCTAAAAATATGAAAATCACTA
1 AAATCTAAAAATATGAAAATCACTA
*
4466483 AAATCTAAAAATATGAAAATCACTG
1 AAATCTAAAAATATGAAAATCACTA
4466508 AAATC
1 AAATC
4466513 AAATATTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.58, C:0.13, G:0.05, T:0.24
Consensus pattern (25 bp):
AAATCTAAAAATATGAAAATCACTA
Found at i:4467015 original size:14 final size:14
Alignment explanation
Indices: 4466994--4467029 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4466984 TCCTATTCTC
4466994 AAAATATTTTTA-A
1 AAAATATTTTTAGA
4467007 AATAATATTTTTAGA
1 AA-AATATTTTTAGA
4467022 AAAATATT
1 AAAATATT
4467030 ATTATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 16 0.76
15 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (14 bp):
AAAATATTTTTAGA
Found at i:4470888 original size:31 final size:31
Alignment explanation
Indices: 4470851--4470914 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
4470841 GGAAATAGGC
4470851 TTGAAAATGCTCAAACAATAAGTTTAAAGCT
1 TTGAAAATGCTCAAACAATAAGTTTAAAGCT
4470882 TTGAAAATGCTCAAACAATAAGTTTAAAGCT
1 TTGAAAATGCTCAAACAATAAGTTTAAAGCT
4470913 TT
1 TT
4470915 CTCTTTGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (31 bp):
TTGAAAATGCTCAAACAATAAGTTTAAAGCT
Found at i:4473461 original size:18 final size:20
Alignment explanation
Indices: 4473428--4473468 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
4473418 AGTTTTCATG
4473428 AAAACAACATAATT-AAATA
1 AAAACAACATAATTAAAATA
*
4473447 AAAACAACA-ATTTAAAATA
1 AAAACAACATAATTAAAATA
4473466 AAA
1 AAA
4473469 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAACAACATAATTAAAATA
Found at i:4474399 original size:15 final size:15
Alignment explanation
Indices: 4474379--4474412 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4474369 ATATCTCCTT
*
4474379 TAATGACATGATCTC
1 TAATGAAATGATCTC
*
4474394 TAATGAAATGATGTC
1 TAATGAAATGATCTC
4474409 TAAT
1 TAAT
4474413 TTCAATGTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (15 bp):
TAATGAAATGATCTC
Found at i:4480741 original size:3 final size:3
Alignment explanation
Indices: 4480735--4480778 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
4480725 TGACGACGAA
*
4480735 GAT GAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
4480779 CGAAACTGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:4484671 original size:16 final size:16
Alignment explanation
Indices: 4484650--4484683 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4484640 TCAAATAGTC
4484650 ATATA-TAAAAAATATT
1 ATATATTAAAAAAT-TT
4484666 ATATATTAAAAAATTT
1 ATATATTAAAAAATTT
4484682 AT
1 AT
4484684 CTTACAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATATTAAAAAATTT
Found at i:4485377 original size:18 final size:18
Alignment explanation
Indices: 4485344--4485390 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
4485334 ACATTCTTTA
*
4485344 AAAACTA-ATATCATATT
1 AAAACTATATATCATATC
4485361 AAAACTATATA-CTATATC
1 AAAACTATATATC-ATATC
*
4485379 ACAACTATATAT
1 AAAACTATATAT
4485391 TTTAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAACTATATATCATATC
Found at i:4486542 original size:31 final size:33
Alignment explanation
Indices: 4486507--4486577 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 33
4486497 TTGACTTGAG
* *
4486507 ATATTTACAAAAGT-TCA-TT-ATATATGTCATA
1 ATATTTACAAAAATATCATTTGATATATAT-ATA
4486538 ATATTTACAAAAATATCATTTGATATATATATA
1 ATATTTACAAAAATATCATTTGATATATATATA
4486571 ATATTTA
1 ATATTTA
4486578 GGTTAACTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 13 0.37
32 3 0.09
33 12 0.34
34 7 0.20
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (33 bp):
ATATTTACAAAAATATCATTTGATATATATATA
Found at i:4499301 original size:6 final size:6
Alignment explanation
Indices: 4499287--4499317 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
4499277 GACACGTATT
*
4499287 ACCATG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG A
4499318 GCCGAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.45, G:0.16, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:4507726 original size:44 final size:44
Alignment explanation
Indices: 4507678--4507856 Score: 277
Period size: 44 Copynumber: 4.1 Consensus size: 44
4507668 TTTTTTATGA
* *
4507678 AAACGCCGCAATAGGTCTGGTATTTAGCGGCGTTTTTCGGATAC
1 AAACGCCGCAATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
* *
4507722 AAACGCCGCGATAGGTCTGGTATATAACGGCGTTTTTAGGATAC
1 AAACGCCGCAATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
** * *
4507766 AAACATCGTAATAGGTCTGGTATATAGCGGCGTTTTTAGGATTC
1 AAACGCCGCAATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
*
4507810 AAACGCCGCGATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
1 AAACGCCGCAATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
4507854 AAA
1 AAA
4507857 TGTTGTTTAT
Statistics
Matches: 120, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 120 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
AAACGCCGCAATAGGTCTGGTATATAGCGGCGTTTTTAGGATAC
Found at i:4508644 original size:41 final size:43
Alignment explanation
Indices: 4508566--4508649 Score: 127
Period size: 41 Copynumber: 2.0 Consensus size: 43
4508556 GACTAATCAC
* *
4508566 AATATTATTGATCAATTGAATATATATCAATAGTCATATTTAT
1 AATATTATTGATCAAATGAATATATATCAATAGTCATAATTAT
*
4508609 AATATTATTTATCAAATG-A-ATATATCAATAGTCATAATTAT
1 AATATTATTGATCAAATGAATATATATCAATAGTCATAATTAT
4508650 TATTAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 21 0.55
42 1 0.03
43 16 0.42
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (43 bp):
AATATTATTGATCAAATGAATATATATCAATAGTCATAATTAT
Found at i:4512134 original size:6 final size:6
Alignment explanation
Indices: 4512115--4512169 Score: 56
Period size: 6 Copynumber: 8.5 Consensus size: 6
4512105 CCTTCTTCCC
* *
4512115 TTTCTAT TTCCTT TTTCTT TTTCTT TTTCTTT TTGTTTT TTTCTTT TTTCTT
1 TTTCT-T TTTCTT TTTCTT TTTCTT TTTC-TT TT-TCTT TTTC-TT TTTCTT
4512167 TTT
1 TTT
4512170 TCTTGATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
6 22 0.54
7 18 0.44
8 1 0.02
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:4512136 original size:7 final size:7
Alignment explanation
Indices: 4512121--4512192 Score: 69
Period size: 7 Copynumber: 10.0 Consensus size: 7
4512111 TCCCTTTCTA
*
4512121 TTTCCTT
1 TTTCTTT
4512128 TTTC-TT
1 TTTCTTT
4512134 TTTC-TT
1 TTTCTTT
4512140 TTTCTTT
1 TTTCTTT
4512147 TTGT-TTT
1 TT-TCTTT
4512154 TTTCTTT
1 TTTCTTT
4512161 TTTCTTT
1 TTTCTTT
4512168 TTTCTTGAT
1 TTTCTT--T
4512177 TTCTCTCTT
1 TT-TCT-TT
4512186 TTTCTTT
1 TTTCTTT
4512193 CTTCGAAAAC
Statistics
Matches: 58, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
6 13 0.22
7 31 0.53
8 4 0.07
9 6 0.10
10 3 0.05
11 1 0.02
ACGTcount: A:0.01, C:0.17, G:0.03, T:0.79
Consensus pattern (7 bp):
TTTCTTT
Found at i:4512140 original size:12 final size:13
Alignment explanation
Indices: 4512115--4512169 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
4512105 CCTTCTTCCC
* *
4512115 TTTCTATTTCCTT
1 TTTCTTTTTTCTT
4512128 TTTC-TTTTTCTT
1 TTTCTTTTTTCTT
*
4512140 TTTCTTTTTGTTTT
1 TTTCTTTTT-TCTT
4512154 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
4512167 TTT
1 TTT
4512170 TCTTGATTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
12 10 0.28
13 14 0.39
14 12 0.33
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (13 bp):
TTTCTTTTTTCTT
Found at i:4514315 original size:25 final size:24
Alignment explanation
Indices: 4514285--4514350 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 24
4514275 TTCAACAAAA
*
4514285 TCGGTGGAAAGTTTTTTTTCAACTT
1 TCGGTGG-AAGTTTTTTTTCAACAT
*
4514310 TCGGTGG-A-TTTGTTTTCAACAT
1 TCGGTGGAAGTTTTTTTTCAACAT
4514332 TCGGTGGAAGCTTTTTTTT
1 TCGGTGGAAG-TTTTTTTT
4514351 ACTTTTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
22 19 0.54
23 2 0.06
25 14 0.40
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.48
Consensus pattern (24 bp):
TCGGTGGAAGTTTTTTTTCAACAT
Found at i:4520300 original size:22 final size:22
Alignment explanation
Indices: 4520232--4520300 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
4520222 CCCGAATGAT
*
4520232 TTAATCATCATGCTCGAAAGGC
1 TTAATCATCATGCTCGAAAGAC
* * *
4520254 TT-A-C-TAATGGCCCGAAGGATTC
1 TTAATCATCAT-GCTCGAAAGA--C
4520276 TTAATCATCATGCTCGAAAGAC
1 TTAATCATCATGCTCGAAAGAC
4520298 TTA
1 TTA
4520301 TTGATGGCCC
Statistics
Matches: 34, Mismatches: 7, Indels: 12
0.64 0.13 0.23
Matches are distributed among these distances:
19 3 0.09
20 8 0.24
21 1 0.03
22 9 0.26
23 1 0.03
24 9 0.26
25 3 0.09
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (22 bp):
TTAATCATCATGCTCGAAAGAC
Found at i:4520668 original size:225 final size:225
Alignment explanation
Indices: 4520348--4521202 Score: 1286
Period size: 225 Copynumber: 3.8 Consensus size: 225
4520338 TGAAATCGCC
* * * *
4520348 TTCTTACTTTTCAAAGATCTCATTTTCTTAAAACATCACTTTCTCGTTTTTCAAATTCAAGTGAA
1 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
* * *
4520413 AACATCTTACCCGAAGGTCTTATAGATGGCCCGAAGGACTTATTATCTTGTTCAAAAGGCTTACA
66 AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTACA
* **
4520478 GATGACCCGAAGGATTTAAGCATCATGGTTTAAAGACTTACTGATGGCTCGAAAGACTTATAAAT
131 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGAAAGACTTATAAAT
*
4520543 TTCAGAAATAGTTTACTAAGTAAGAAACCT
196 TTCAGAAATAGTTTACTAGGTAAGAAACCT
4520573 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
1 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
* *
4520638 AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAAGACTTGTCATCTTGCTCAAAAGGCTTACA
66 AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTACA
* * * *
4520703 GATAACTCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGATGG-TCCGAAGGACTTATAAA
131 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCT-CGAAAGACTTATAAA
4520767 TTTCAGAAATAGTTTACTAGGTAAGAAACCT
195 TTTCAGAAATAGTTTACTAGGTAAGAAACCT
* ** * *
4520798 TTCTTACTTTCCAAAG-----ATTTTCTTAAAATGTTACTTTATCTTTTTTCAAATTCATGTGAA
1 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
* * *
4520858 AACATCTTACCCGAAGGTCTTATGGATGGCCCAAATGACTTATCATCTTGCTCAAAAGGTTTACA
66 AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTACA
* *
4520923 GATGACCCGAAGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTATAAAT
131 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGAAAGACTTATAAAT
4520988 TTCAGAAATAGTTTACTAGGTAAGAAACCT
196 TTCAGAAATAGTTTACTAGGTAAGAAACCT
4521018 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
1 TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
* * *
4521083 AACATCCTACCCAAAGGTTTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTAC-
66 AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTACA
* * * *
4521147 ----A--CAAAGGATTTTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAAAAGACTTA
131 GATGACCCGAAGGA--TTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGAAAGACTTA
4521203 ACTTGTTAAC
Statistics
Matches: 574, Mismatches: 47, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
218 5 0.01
220 249 0.43
224 1 0.00
225 319 0.56
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34
Consensus pattern (225 bp):
TTCTTACTTTTCAAAGATTTCATTTTCTTAAAACATTACTTTCTCATTTTTCAAATTCATGTGAA
AACATCTTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGGCTTACA
GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCTCGAAAGACTTATAAAT
TTCAGAAATAGTTTACTAGGTAAGAAACCT
Found at i:4522728 original size:125 final size:124
Alignment explanation
Indices: 4522506--4522766 Score: 348
Period size: 125 Copynumber: 2.1 Consensus size: 124
4522496 GCATTCACTA
* *
4522506 GTGCCGCAACGTTATCTTATACTGGTACGGGCCTTCAAAATACCCCAACACCTCAAATTATAAGG
1 GTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAAAATACCCCAACACCTCAAATTATAAGG
* * *
4522571 CTTATTCTCAATGCCTTATTAGTCTGAATCTTGTCATCTCAACATGATGTGGGTTCAGTC
66 CTCATTCTCAATGCCTGATTAGTCTGAATCTTGTCATCTCAACATGATG-GGCTTCAGTC
* *
4522631 GTGCCCCAACATTATTTTATACTGGTACGGGCCTTCAAAAT-GCCCAATCACCTCAAATT-TCAA
1 GTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAAAATACCCCAA-CACCTCAAATTAT-AA
* * * * * *
4522694 GGCTCGTTATTC-ATGCCTGCTTGGTCTGAATCTTGTCATCTTAACATGATGGGCTTCAGTT
64 GGCTCATT-CTCAATGCCTGATTAGTCTGAATCTTGTCATCTCAACATGATGGGCTTCAGTC
4522755 GTGCCCCAACAT
1 GTGCCCCAACAT
4522767 ATCCTAACTC
Statistics
Matches: 120, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
124 26 0.22
125 92 0.77
126 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (124 bp):
GTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAAAATACCCCAACACCTCAAATTATAAGG
CTCATTCTCAATGCCTGATTAGTCTGAATCTTGTCATCTCAACATGATGGGCTTCAGTC
Found at i:4526710 original size:25 final size:25
Alignment explanation
Indices: 4526676--4526737 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
4526666 CATATGCTAG
4526676 CTACCCAATCATGTTTTAGTAGATC
1 CTACCCAATCATGTTTTAGTAGATC
4526701 CTACCCAATCATGTTTTAGTAGATC
1 CTACCCAATCATGTTTTAGTAGATC
4526726 CTACCCAA-CATG
1 CTACCCAATCATG
4526738 AATCTACCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.11
25 33 0.89
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.32
Consensus pattern (25 bp):
CTACCCAATCATGTTTTAGTAGATC
Found at i:4531057 original size:22 final size:23
Alignment explanation
Indices: 4530996--4531057 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
4530986 TTCAACAAAA
*
4530996 TCGGTGGAAAGTTTTTTCCAACTT
1 TCGGTGG-AAGTTTTTTCCAACAT
*
4531020 TCGGTGG-A-TTTGTTTTCAACAT
1 TCGGTGGAAGTTT-TTTCCAACAT
*
4531042 TCGGTGGAAGCTTTTT
1 TCGGTGGAAGTTTTTT
4531058 ATGACTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 3 0.09
22 16 0.50
23 4 0.12
24 9 0.28
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.44
Consensus pattern (23 bp):
TCGGTGGAAGTTTTTTCCAACAT
Found at i:4531432 original size:24 final size:23
Alignment explanation
Indices: 4531405--4531468 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
4531395 TTCAACAAAA
* *
4531405 TCGGTGGAAAGTTTTTTTCAGCTT
1 TCGGTGG-AAGTTTTTTTCAACAT
4531429 TCGGTGG-A-TTTGTTTTCAACAT
1 TCGGTGGAAGTTT-TTTTCAACAT
4531451 TCGGTGGAAGCTTTTTTT
1 TCGGTGGAAG-TTTTTTT
4531469 GACTTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 3 0.09
22 16 0.47
23 1 0.03
24 11 0.32
25 3 0.09
ACGTcount: A:0.16, C:0.12, G:0.25, T:0.47
Consensus pattern (23 bp):
TCGGTGGAAGTTTTTTTCAACAT
Found at i:4531589 original size:409 final size:412
Alignment explanation
Indices: 4530825--4531646 Score: 1434
Period size: 409 Copynumber: 2.0 Consensus size: 412
4530815 TAACTCTCAA
4530825 GAAACTCTCTAAATTCTCTAGTATTGAGAGAAAGCTAGAATGATTTGGGATGATTTTGAAACTAA
1 GAAACTCTCTAAATTCTCTAGTATTGAGAGAAAGCTAGAATGATTTGGGATGATTTTGAAACTAA
4530890 ATGGGTTAGGGTATTTATAATTGAAGCTTAAGGACTAATCTTGTAAATACCCTAAAGTACAAGGG
66 ATGGGTTAGGGTATTTATAATTGAAGCTTAAGGACTAATCTTGTAAATACCCTAAAGTACAAGGG
4530955 GCTAAATATGCAATTATCCCATTAGCAAATATTCAACAAAATCGGTGGAAAGTTTTTTCCAACTT
131 GCTAAATATGCAA-TAT-CCATTAGCAAATATTCAACAAAATCGGTGGAAAGTTTTTTCCAACTT
4531020 TCGGTGGATTTGTTTTCAACATTCGGTGGAAGCTTTTTATGACTTTTAACAATAAACGGGGATTA
194 TCGGTGGATTTGTTTTCAACATTCGGTGGAAGCTTTTTATGACTTTTAACAATAAACGGGGATTA
*
4531085 CTGATAAAACCGATTTAGCCAGGGTGACTGCCAAACGTAGATAGATATTTTACTGCTCATCCATT
259 CTGATAAAACCGATTTAGCCAGGGTGACTGCCAAACGTAGATAGATAGTTTACTGCTCATCCATT
* * *
4531150 GGGTTTATTATGGAATTTATCAAATATGAACGAAAAATCATTCAAGCTAGCTCTACCTGAGAGAA
324 GAGTTTATTATGGAATTTATCAAATATGAACGAAAAAGCATTCAAGCTAGCTCTACCGGAGAGAA
*
4531215 CCATGACGCCAAGGTACTTCCCTT
389 CCAGGACGCCAAGGTACTTCCCTT
* * *
4531239 GAAACTCTCTAAATTCTCTAGTATTGGGAGAAAGTTAGAATGATTTGGGATGATTTTGAAATTAA
1 GAAACTCTCTAAATTCTCTAGTATTGAGAGAAAGCTAGAATGATTTGGGATGATTTTGAAACTAA
* *
4531304 ATGGGTTAGGGTATTTATAGTTGAAGCTTAAGGACTAATCTTGTAAATACCCTAAAGTATAAGGG
66 ATGGGTTAGGGTATTTATAATTGAAGCTTAAGGACTAATCTTGTAAATACCCTAAAGTACAAGGG
* * *
4531369 GCTAAATATGC-A-AT-CATTAGTAAATATTCAACAAAATCGGTGGAAAGTTTTTTTCAGCTTTC
131 GCTAAATATGCAATATCCATTAGCAAATATTCAACAAAATCGGTGGAAAGTTTTTTCCAACTTTC
* *
4531431 GGTGGATTTGTTTTCAACATTCGGTGGAAGCTTTTTTTGACTTTTAATAATAAACGGGGATTACT
196 GGTGGATTTGTTTTCAACATTCGGTGGAAGCTTTTTATGACTTTTAACAATAAACGGGGATTACT
* * *
4531496 GATAAAATCGATTTAGCCAGGGTGATTGCCAATCGTAGATAGATAGTTTACTGCTCATCCATTGA
261 GATAAAACCGATTTAGCCAGGGTGACTGCCAAACGTAGATAGATAGTTTACTGCTCATCCATTGA
*
4531561 GTTTATTATGGAATTTATCAAATATGAACGAAAAAGCATTCAAGCTAGCTCTACCGGAGAGAACT
326 GTTTATTATGGAATTTATCAAATATGAACGAAAAAGCATTCAAGCTAGCTCTACCGGAGAGAACC
4531626 AGGACGCCAAGGTACTTCCCT
391 AGGACGCCAAGGTACTTCCCT
4531647 AATTGAATCC
Statistics
Matches: 389, Mismatches: 19, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
409 250 0.64
411 2 0.01
413 1 0.00
414 136 0.35
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (412 bp):
GAAACTCTCTAAATTCTCTAGTATTGAGAGAAAGCTAGAATGATTTGGGATGATTTTGAAACTAA
ATGGGTTAGGGTATTTATAATTGAAGCTTAAGGACTAATCTTGTAAATACCCTAAAGTACAAGGG
GCTAAATATGCAATATCCATTAGCAAATATTCAACAAAATCGGTGGAAAGTTTTTTCCAACTTTC
GGTGGATTTGTTTTCAACATTCGGTGGAAGCTTTTTATGACTTTTAACAATAAACGGGGATTACT
GATAAAACCGATTTAGCCAGGGTGACTGCCAAACGTAGATAGATAGTTTACTGCTCATCCATTGA
GTTTATTATGGAATTTATCAAATATGAACGAAAAAGCATTCAAGCTAGCTCTACCGGAGAGAACC
AGGACGCCAAGGTACTTCCCTT
Found at i:4534985 original size:6 final size:6
Alignment explanation
Indices: 4534974--4535067 Score: 153
Period size: 6 Copynumber: 16.5 Consensus size: 6
4534964 GACACGTATT
4534974 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
4535022 ACCACG ACCACG ACCACG ACC-CG ACC-CG ACC-CG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
4535065 ACC
1 ACC
4535068 CGAGACGAGA
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 25 0.28
6 63 0.72
ACGTcount: A:0.30, C:0.53, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:4535567 original size:5 final size:5
Alignment explanation
Indices: 4535559--4535618 Score: 93
Period size: 5 Copynumber: 11.6 Consensus size: 5
4535549 CCGTCTCGTC
*
4535559 TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCTGG TCGTGG
1 TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCGGG TCG-GG
4535610 TCGTGG TCG
1 TCG-GG TCG
4535619 TGGTAATACA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
5 41 0.79
6 11 0.21
ACGTcount: A:0.00, C:0.20, G:0.55, T:0.25
Consensus pattern (5 bp):
TCGGG
Found at i:4535746 original size:21 final size:21
Alignment explanation
Indices: 4535722--4535792 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
4535712 TGGATGGAAA
4535722 ATCGCAACGACACTGTACACT
1 ATCGCAACGACACTGTACACT
* * *
4535743 ATCGCAATACGAGA-TGGA-A-A
1 ATCGC-A-ACGACACTGTACACT
*
4535763 ATCGCAATGACACTGTACACT
1 ATCGCAACGACACTGTACACT
4535784 ATCGCAACG
1 ATCGCAACG
4535793 CGATTTTCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
18 4 0.11
19 4 0.11
20 6 0.16
21 14 0.38
22 4 0.11
23 5 0.14
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (21 bp):
ATCGCAACGACACTGTACACT
Found at i:4535807 original size:21 final size:21
Alignment explanation
Indices: 4535781--4535878 Score: 83
Period size: 21 Copynumber: 4.7 Consensus size: 21
4535771 GACACTGTAC
4535781 ACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGATTTTCA
* ** **
4535802 ATTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATTTTCA
* ** * *
4535823 A-AATCGCAACGATACTGT-A
1 ACTATCGCAACGCGATTTTCA
4535842 GACTATCGCAACGCGATTTTCA
1 -ACTATCGCAACGCGATTTTCA
4535864 ACTATCGCAACGCGA
1 ACTATCGCAACGCGA
4535879 AATGCAACGC
Statistics
Matches: 57, Mismatches: 17, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.02
20 11 0.19
21 44 0.77
22 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (21 bp):
ACTATCGCAACGCGATTTTCA
Found at i:4535822 original size:62 final size:62
Alignment explanation
Indices: 4535740--4535882 Score: 223
Period size: 62 Copynumber: 2.3 Consensus size: 62
4535730 GACACTGTAC
** * *
4535740 ACTATCGCAATACGAGATGGAAAATCGCAATGACACTGTACACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTACACTATCGCAACGCGATTTTCA
* * *
4535802 ATTATCGCAACGCGAAATGGAAAATCGCAACGATACTGTAGACTATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTACACTATCGCAACGCGATTTTCA
4535864 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
4535883 CAACGCGAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (62 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGACACTGTACACTATCGCAACGCGATTTTCA
Found at i:4540692 original size:36 final size:36
Alignment explanation
Indices: 4540647--4540755 Score: 182
Period size: 36 Copynumber: 3.0 Consensus size: 36
4540637 ACCATCCCTA
* *
4540647 ATGATAACATTAATACATGAATGTACCAAAGCTGAT
1 ATGATAACATTGATACACGAATGTACCAAAGCTGAT
*
4540683 ATGACAACATTGATACACGAATGTACCAAAGCTGAT
1 ATGATAACATTGATACACGAATGTACCAAAGCTGAT
*
4540719 ATGATAACATTGATACACGAATGTATCAAAGCTGAT
1 ATGATAACATTGATACACGAATGTACCAAAGCTGAT
4540755 A
1 A
4540756 ATACTTAACT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (36 bp):
ATGATAACATTGATACACGAATGTACCAAAGCTGAT
Found at i:4543016 original size:28 final size:28
Alignment explanation
Indices: 4542976--4543029 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
4542966 TCCTTAAACT
**
4542976 TTTCAAAGTTTATACTTTAGCCACTAAC
1 TTTCAAAACTTATACTTTAGCCACTAAC
* *
4543004 TTTCAAAACTTATATTTTAGTCACTA
1 TTTCAAAACTTATACTTTAGCCACTA
4543030 GCCAAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.43
Consensus pattern (28 bp):
TTTCAAAACTTATACTTTAGCCACTAAC
Found at i:4544457 original size:64 final size:64
Alignment explanation
Indices: 4544404--4544566 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 64
4544394 CGGTGCACCA
*
4544404 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** * **
4544468 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * *
4544533 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
4544567 CAATTAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (64 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:4544538 original size:19 final size:19
Alignment explanation
Indices: 4544514--4544564 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
4544504 GAAAATATTC
4544514 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
4544533 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
4544552 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
4544565 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:4544606 original size:65 final size:65
Alignment explanation
Indices: 4544408--4544615 Score: 207
Period size: 65 Copynumber: 3.2 Consensus size: 65
4544398 GCACCAAGTG
* * ** *
4544408 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-CTT
1 TGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC-T
4544471 G-
64 GA
* * *
4544472 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGACTG
4544535 A
65 A
* *
4544536 GTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGGA
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGGA
4544598 CTGA
62 CTGA
4544602 TGCATCGGTGCATG
1 TGCATCGGTGCATG
4544616 CATTTGAATA
Statistics
Matches: 124, Mismatches: 10, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.02
63 8 0.06
64 51 0.41
65 60 0.48
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (65 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGACTGA
Found at i:4544806 original size:20 final size:21
Alignment explanation
Indices: 4544783--4544822 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
4544773 GAATCGAATA
*
4544783 TAAATTCGTAAAA-TCATTTG
1 TAAAATCGTAAAATTCATTTG
*
4544803 TAAAATCTTAAAATTCATTT
1 TAAAATCGTAAAATTCATTT
4544823 AACTTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
TAAAATCGTAAAATTCATTTG
Found at i:4549460 original size:22 final size:21
Alignment explanation
Indices: 4549434--4549480 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 21
4549424 AAGGTCAAAA
*
4549434 ATCAAATTGTTTGAAAATTG-AT
1 ATCAAATGGTTT-AAAA-TGAAT
4549456 ATC-AATGGTTTAAAATGAAT
1 ATCAAATGGTTTAAAATGAAT
4549476 ATCAA
1 ATCAA
4549481 TTACGTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 2 0.09
20 9 0.41
21 8 0.36
22 3 0.14
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (21 bp):
ATCAAATGGTTTAAAATGAAT
Found at i:4551588 original size:64 final size:62
Alignment explanation
Indices: 4551520--4551697 Score: 187
Period size: 64 Copynumber: 2.8 Consensus size: 62
4551510 GAACACTTGA
* *
4551520 TGCATCGGTGCACTAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-G
1 TGCATCGATGCA-T-AGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCCAGAG
* * **
4551584 TGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAG
1 TGCATCGATGCATAG--TGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCCAGAG
* * * *
4551649 TGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATACATTCGATGTT
1 TGCATCGATGCAT--AGTGTGCATCGATGCATGAAATGCATTCGATGTT
4551698 CAATTAATTC
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 50 0.52
65 43 0.45
67 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (62 bp):
TGCATCGATGCATAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCCAGAG
Found at i:4551669 original size:19 final size:19
Alignment explanation
Indices: 4551645--4551683 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4551635 GAAAATATTC
4551645 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
4551664 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
4551683 A
1 A
4551684 ATACATTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.38, T:0.21
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:4551671 original size:65 final size:65
Alignment explanation
Indices: 4551538--4551697 Score: 207
Period size: 65 Copynumber: 2.5 Consensus size: 65
4551528 TGCACTAAGT
* ***
4551538 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGCCTGGTGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGA
* **
4551602 GTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAG-GTGCATCGATGCATGGAG
4551666 A
65 A
* * *
4551667 GTGCATCGGTGCATGGAATACATTCGATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
4551698 CAATTAATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 36 0.43
65 47 0.57
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGA
Found at i:4551937 original size:20 final size:21
Alignment explanation
Indices: 4551914--4551953 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
4551904 GAATCGAATA
*
4551914 TAAATTCGTAAAA-TCATTTG
1 TAAAATCGTAAAATTCATTTG
*
4551934 TAAAATCTTAAAATTCATTT
1 TAAAATCGTAAAATTCATTT
4551954 AACTTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
TAAAATCGTAAAATTCATTTG
Found at i:4557142 original size:36 final size:36
Alignment explanation
Indices: 4557102--4557204 Score: 161
Period size: 36 Copynumber: 2.9 Consensus size: 36
4557092 ACGGTGCTGG
*
4557102 ACATTGATACACGAATGTACCAAAGCTGATACGATA
1 ACATTGATACACGAATGTACCAAAGCTGATACAATA
*
4557138 ACATTGATACACGAATGTACCAAAGCTGATATAATA
1 ACATTGATACACGAATGTACCAAAGCTGATACAATA
* * *
4557174 ACAATGATACACGAATGTATCAAAGATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
4557205 ATACTAAACT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.45, C:0.17, G:0.16, T:0.23
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATACAATA
Found at i:4559467 original size:29 final size:30
Alignment explanation
Indices: 4559414--4559474 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
4559404 TTTTGGTCCT
**
4559414 TAAACTTTTCAAAGTTTATACTTTAGCCAC
1 TAAACTTTTCAAAAATTATACTTTAGCCAC
* *
4559444 TAAACTTTT-AAAAATTATATTTTAGTCAC
1 TAAACTTTTCAAAAATTATACTTTAGCCAC
4559473 TA
1 TA
4559475 GCCAAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.43
Consensus pattern (30 bp):
TAAACTTTTCAAAAATTATACTTTAGCCAC
Found at i:4561489 original size:32 final size:32
Alignment explanation
Indices: 4561452--4561519 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
4561442 AAAACCATAA
4561452 CCATATTAATACTGCTAATATACAAGAATAGC
1 CCATATTAATACTGCTAATATACAAGAATAGC
4561484 CCATATTAATACTGCTAATATACAAGAATAGC
1 CCATATTAATACTGCTAATATACAAGAATAGC
4561516 CCAT
1 CCAT
4561520 TACTTCGGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (32 bp):
CCATATTAATACTGCTAATATACAAGAATAGC
Found at i:4562034 original size:21 final size:20
Alignment explanation
Indices: 4562008--4562205 Score: 159
Period size: 21 Copynumber: 9.3 Consensus size: 20
4561998 CATATTCACA
*
4562008 TTGCGA-TAGTCCAAGTTCGCG
1 TTGCGATTATTCCAAGTT--CG
4562029 TTGCGATTTATTCCAAGTTCG
1 TTGCGA-TTATTCCAAGTTCG
* * *
4562050 TTGAGA-TAGTCGAAGTTCGCG
1 TTGCGATTATTCCAAGTT--CG
*
4562071 TTGCGATTTATTCCAAATTCG
1 TTGCGA-TTATTCCAAGTTCG
* *
4562092 TTGCGATTTATTCCAAATTCA
1 TTGCGA-TTATTCCAAGTTCG
4562113 TTGCGATTTATTCCAAGTTCGCG
1 TTGCGA-TTATTCCAAGTT--CG
*
4562136 TTGCGATTTATTCCAAATTCG
1 TTGCGA-TTATTCCAAGTTCG
* *
4562157 TTGCGA-TAGTCGAAGTTCGCG
1 TTGCGATTATTCCAAGTT--CG
4562178 TTGCGATTTATTCCAAGTTCG
1 TTGCGA-TTATTCCAAGTTCG
4562199 TTGCGAT
1 TTGCGAT
4562206 AGTCCAAAAT
Statistics
Matches: 148, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
19 17 0.11
20 1 0.01
21 84 0.57
23 46 0.31
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTATTCCAAGTTCG
Found at i:4562186 original size:42 final size:42
Alignment explanation
Indices: 4562090--4562212 Score: 192
Period size: 42 Copynumber: 2.9 Consensus size: 42
4562080 ATTCCAAATT
* *
4562090 CGTTGCGATTTATTCCAAATTCATTGCGATTTATTCCAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGA--TAGTCCAAGTTCG
*
4562134 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
*
4562176 CGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCCAA
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAA
4562213 AATTGCAACG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
42 46 0.62
44 28 0.38
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (42 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
Found at i:4562329 original size:10 final size:11
Alignment explanation
Indices: 4562298--4562331 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
4562288 GACACGTATT
4562298 ACCACGACCACG
1 ACCACGACC-CG
4562310 ACCACGACCCG
1 ACCACGACCCG
4562321 ACC-CGACCCG
1 ACCACGACCCG
4562331 A
1 A
4562332 GACGAGACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.29, C:0.53, G:0.18, T:0.00
Consensus pattern (11 bp):
ACCACGACCCG
Found at i:4562858 original size:12 final size:11
Alignment explanation
Indices: 4562828--4562861 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
4562818 CCGTCTCGTC
4562828 TCGGGTCG-GG
1 TCGGGTCGTGG
4562838 TCGGGTCGTGG
1 TCGGGTCGTGG
4562849 TCGTGGTCGTGG
1 TCG-GGTCGTGG
4562861 T
1 T
4562862 AATGCGTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (11 bp):
TCGGGTCGTGG
Found at i:4562970 original size:21 final size:21
Alignment explanation
Indices: 4562944--4563011 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
4562934 CACCAGTCGT
*
4562944 TGCGATTTTGGACTATCGCAA
1 TGCGATATTGGACTATCGCAA
* * *
4562965 TGCGATAGTCGACTATCGTAA
1 TGCGATATTGGACTATCGCAA
4562986 TGCGA-ACTTGGACTATCGCAA
1 TGCGATA-TTGGACTATCGCAA
4563007 TGCGA
1 TGCGA
4563012 ATATGTAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 1 0.03
21 38 0.97
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (21 bp):
TGCGATATTGGACTATCGCAA
Found at i:4563056 original size:21 final size:21
Alignment explanation
Indices: 4563021--4563177 Score: 176
Period size: 21 Copynumber: 7.5 Consensus size: 21
4563011 AATATGTAAA
* * *
4563021 TCGCAATGGGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
4563042 TCGTATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
4563063 TCGCATTGCGATAGT-CGACT
1 TCGCATTGCGATAGTCCAAGT
* *
4563083 ATCGCATTGCGAT-TTACATA-T
1 -TCGCATTGCGATAGTCCA-AGT
4563104 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
4563125 TCGCATTGCGATAGTCCAAGC
1 TCGCATTGCGATAGTCCAAGT
*
4563146 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
4563167 TCGCGTTGCGA
1 TCGCATTGCGA
4563178 ATTTGGAAAC
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
20 17 0.15
21 98 0.84
22 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:4563150 original size:62 final size:62
Alignment explanation
Indices: 4563041--4563157 Score: 189
Period size: 62 Copynumber: 1.9 Consensus size: 62
4563031 ATAGTCGAAG
* * **
4563041 TTCGTATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGATCGCATTGCGATTTACATA
*
4563103 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGCTCGCATTGCGAT
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGATCGCATTGCGAT
4563158 AGTCGAAGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (62 bp):
TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGATCGCATTGCGATTTACATA
Found at i:4563170 original size:42 final size:42
Alignment explanation
Indices: 4563021--4563177 Score: 194
Period size: 42 Copynumber: 3.8 Consensus size: 42
4563011 AATATGTAAA
* * *
4563021 TCGCAATGGGATAGTCGAAGTTCGTATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAGT
* * *
4563063 TCGCATTGCGATAGTCG-ACTATCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGTCCA-AGT
* *
4563104 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGC
1 TCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAGT
*
4563146 TCGCATTGCGATAGTCGAAGTTCGCGTTGCGA
1 TCGCATTGCGATAGTCGAAGTTCGCATTGCGA
4563178 ATTTGGAAAC
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 35 0.36
42 62 0.64
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (42 bp):
TCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAGT
Found at i:4563607 original size:37 final size:37
Alignment explanation
Indices: 4563534--4563607 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
4563524 CTATTTTTAA
**
4563534 TTTATATATTTTCTTTAAAAATTTTAAATTTATAAAT
1 TTTATATATTTTCTTTAAAAATTTTAAAAATATAAAT
*
4563571 TTTATATAATTTTTTTTACAAAA-TTTAAAAAT-TAAAT
1 TTTATAT-ATTTTCTTTA-AAAATTTTAAAAATATAAAT
4563608 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 12 0.38
38 16 0.50
39 4 0.12
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (37 bp):
TTTATATATTTTCTTTAAAAATTTTAAAAATATAAAT
Found at i:4564647 original size:23 final size:23
Alignment explanation
Indices: 4564597--4564654 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
4564587 TTCATTTAGT
*
4564597 GTTCGTGAACATGCTCATTTGAT
1 GTTCGTGAACATGCTCATTTGAC
* *
4564620 ATTCGT-ATACATGTTCATTTGAC
1 GTTCGTGA-ACATGCTCATTTGAC
*
4564643 GTTCGTCAACAT
1 GTTCGTGAACAT
4564655 ATCGTTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.03
23 27 0.93
24 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (23 bp):
GTTCGTGAACATGCTCATTTGAC
Found at i:4565980 original size:14 final size:14
Alignment explanation
Indices: 4565961--4565995 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
4565951 TTGAAAGGTT
* *
4565961 TTTATTTATTTTAA
1 TTTATTTAATTAAA
4565975 TTTATTTAATTAAA
1 TTTATTTAATTAAA
4565989 TTTATTT
1 TTTATTT
4565996 TCAATCCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTAATTAAA
Found at i:4566704 original size:27 final size:28
Alignment explanation
Indices: 4566650--4566712 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
4566640 TTTTTAAAAA
4566650 ATAAATATAAAAATATTGAATTTAATTT
1 ATAAATATAAAAATATTGAATTTAATTT
* * *
4566678 ATAATTATAAAAATATT-ATTTTTATTT
1 ATAAATATAAAAATATTGAATTTAATTT
*
4566705 TTAAATAT
1 ATAAATAT
4566713 TACATTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 14 0.47
28 16 0.53
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (28 bp):
ATAAATATAAAAATATTGAATTTAATTT
Found at i:4572249 original size:19 final size:19
Alignment explanation
Indices: 4572222--4572267 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
4572212 ATGTTTTATG
* * *
4572222 AATAATATTGTGCTGTATA
1 AATAGTATTGTACTATATA
*
4572241 AATAGTATTGTACTATATG
1 AATAGTATTGTACTATATA
4572260 AATAGTAT
1 AATAGTAT
4572268 CGACACTGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.41
Consensus pattern (19 bp):
AATAGTATTGTACTATATA
Found at i:4572281 original size:20 final size:19
Alignment explanation
Indices: 4572234--4572283 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
4572224 TAATATTGTG
* * *
4572234 CTGTATAAATAGTATTGTA
1 CTGTATGAATAGTATCGCA
*
4572253 CTATATGAATAGTATCGACA
1 CTGTATGAATAGTATCG-CA
4572273 CTGTATGAATA
1 CTGTATGAATA
4572284 CTACCAATGC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
CTGTATGAATAGTATCGCA
Found at i:4581525 original size:18 final size:18
Alignment explanation
Indices: 4581502--4581548 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
4581492 CAACATTTCC
*
4581502 GGTAATCTTA-TTCTCGCT
1 GGTAATCTTATTTC-CACT
*
4581520 GGTAATCCTATTTCCACT
1 GGTAATCTTATTTCCACT
4581538 GGTAATCTTAT
1 GGTAATCTTAT
4581549 ATTCTGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 22 0.88
19 3 0.12
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (18 bp):
GGTAATCTTATTTCCACT
Found at i:4590869 original size:15 final size:17
Alignment explanation
Indices: 4590838--4590869 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
4590828 TTGTATTTTT
4590838 ATCTATCTTGCAATTTA
1 ATCTATCTTGCAATTTA
4590855 ATCTA-CTTG-AATTTA
1 ATCTATCTTGCAATTTA
4590870 TTATATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (17 bp):
ATCTATCTTGCAATTTA
Found at i:4591003 original size:22 final size:23
Alignment explanation
Indices: 4590965--4591008 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4590955 AAGAAAATGA
4590965 AAAGAAAAAGAAAATAACAAAAG
1 AAAGAAAAAGAAAATAACAAAAG
*
4590988 AAAGTAAAA-AAAATAACAAAA
1 AAAGAAAAAGAAAATAACAAAA
4591009 ACCAAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.07
Consensus pattern (23 bp):
AAAGAAAAAGAAAATAACAAAAG
Found at i:4591411 original size:2 final size:2
Alignment explanation
Indices: 4591406--4591437 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4591396 GAGTTTGTTC
4591406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4591438 TAATTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4593554 original size:30 final size:30
Alignment explanation
Indices: 4593518--4593589 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
4593508 CCCGCAGGAC
*
4593518 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
4593548 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
*
4593578 CTATCCATAGGT
1 CTATCCAGAGGT
4593590 TCCGAAGAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGCAA
Found at i:4593623 original size:31 final size:30
Alignment explanation
Indices: 4593576--4593700 Score: 128
Period size: 31 Copynumber: 4.0 Consensus size: 30
4593566 GATCCTCGGC
* * *
4593576 AACTATCCATAGGTTCCGAAGAACCTAGGT
1 AACTGTCCATATGTTCCGAAGAACATAGGT
**
4593606 GAACTGTCCATATGTTCCTTAGAACATAGGT
1 -AACTGTCCATATGTTCCGAAGAACATAGGT
4593637 ATACTGTCCATATG-TCTCGAA-AGACATAGGT
1 A-ACTGTCCATATGTTC-CGAAGA-ACATAGGT
*
4593668 AATTCTGTCCATATGTTCCGTAGAACATAGGT
1 AA--CTGTCCATATGTTCCGAAGAACATAGGT
4593700 A
1 A
4593701 CCCTTGACTC
Statistics
Matches: 79, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
30 5 0.06
31 48 0.61
32 23 0.29
33 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (30 bp):
AACTGTCCATATGTTCCGAAGAACATAGGT
Found at i:4598793 original size:30 final size:30
Alignment explanation
Indices: 4598757--4598828 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
4598747 CCCGCAGGAC
*
4598757 CTATCCAGAGGTCATAAAGATCCTCGATAA
1 CTATCCAGAGGTCATAAAGATCCTCGACAA
*
4598787 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAGAGGTCATAAAGATCCTCGACAA
*
4598817 CTATCCATAGGT
1 CTATCCAGAGGT
4598829 TCCGAAGAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGACAA
Found at i:4598935 original size:32 final size:31
Alignment explanation
Indices: 4598820--4598939 Score: 104
Period size: 31 Copynumber: 3.8 Consensus size: 31
4598810 TCGGCAACTA
* * *
4598820 TCCATAGGTTCCGAAGAACCTAGGTGAA-CTG
1 TCCATATGTTCCGTAGAACATAGGT-AATCTG
* *
4598851 TCCTTATGTTCCTTAGAACATAGGT-ATACTG
1 TCCATATGTTCCGTAGAACATAGGTAAT-CTG
* *
4598882 TCCATATG-T-CTTGAAAGACATAGGTAATTCTG
1 TCCATATGTTCCGT-AGA-ACATAGGTAA-TCTG
4598914 TCCATATGTTCCGTAGAACATAGGTA
1 TCCATATGTTCCGTAGAACATAGGTA
4598940 CCCTTGACTC
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
29 4 0.06
30 3 0.04
31 38 0.53
32 21 0.29
33 4 0.06
34 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (31 bp):
TCCATATGTTCCGTAGAACATAGGTAATCTG
Done.