Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9952466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 43
Found at i:6881951 original size:19 final size:19
Alignment explanation
Indices: 6881927--6881974 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
6881917 GATGCAATTA
6881927 GTATCGATACTGAGAGGTG
1 GTATCGATACTGAGAGGTG
6881946 GTATCGATACTGAGAGGTG
1 GTATCGATACTGAGAGGTG
6881965 GTATCGATAC
1 GTATCGATAC
6881975 CATTTATTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (19 bp):
GTATCGATACTGAGAGGTG
Found at i:6882459 original size:55 final size:55
Alignment explanation
Indices: 6882388--6883045 Score: 908
Period size: 55 Copynumber: 11.9 Consensus size: 55
6882378 ATTACCAAAT
* * *
6882388 GGCACTATGCGTGCAAAACTAAGAAATTCGTAATAAGTTTATGAATTTTCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* *
6882443 AGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* *
6882498 GGCACTTTGTGTGCAAAACTAAGAGATTCATAAAAAGTTTATGAATTTTCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* *
6882553 GCCACTTTTTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* * *
6882608 GGCACTTTGTGTGCAAAGCTAAGAAATTCATAATAAGTTTATGAATTTCCATATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* *
6882663 GG-ACTTTGTGTGCAAAGCTAAGAAATTCATAATAAGTTTTTGAA-TTTCTGTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTC-GTATG
* * *
6882717 GGCACTTTGTGTGCAAAACTAATAAATTCATAATAAGTTTATGAATTTCCGTATA
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* * *
6882772 GACACTTTGTGTCCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCATATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* * * * * *
6882827 GGCACTTTTTGTGTAAAGCTAAGAAATTCATAATAAGTTTATGAATATCCGCATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* * * *
6882882 GGCATTTTGTGTGCAAAGCTAAAAAATTCATAATAAGTTTCTGAATTTAT-GTATG
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTT-TCGTATG
* * * * *
6882937 GGCACTTTGTGTGCAATATTAAGAAATTCATAATAAGTTTATGAATTTCCGTTTA
1 GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
* *
6882992 GGCATATTGTGTATGTGCAAAAATAAGAAATTCATAATAAGTTTATGAATTTTC
1 GGCA-CTT-TG--TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTC
6883046 ATATTGTTAG
Statistics
Matches: 532, Mismatches: 62, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
53 3 0.01
54 47 0.09
55 437 0.82
56 5 0.01
57 2 0.00
59 38 0.07
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (55 bp):
GGCACTTTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
Found at i:6884227 original size:19 final size:19
Alignment explanation
Indices: 6884200--6884240 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
6884190 GTATCAATAC
* *
6884200 TACTATATTATGGTACTGA
1 TACTATATTACGGTACCGA
*
6884219 TACTCTATTACGGTACCGA
1 TACTATATTACGGTACCGA
6884238 TAC
1 TAC
6884241 CATTTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (19 bp):
TACTATATTACGGTACCGA
Found at i:6890531 original size:55 final size:54
Alignment explanation
Indices: 6890389--6891010 Score: 741
Period size: 55 Copynumber: 11.4 Consensus size: 54
6890379 TTTATTAAGA
* * * *
6890389 TGCACACGTAGTGCCTATACGG-TAGTTCATCAACTCATGATGAATTATGTGGGTT
1 TGCACACATAGTGCCTGTACGGTTA-TTCATCAACTCATGATGAATT-CGTGGATT
* * * * *
6890444 AT--ACACATCGTGCATGTATGGTTATTCATCAACTAATGATGAATTACATGGATT
1 -TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATT-CGTGGATT
* * *
6890498 TGCACACATAGTGCTTGTACGGTTGTTCATCAACTCATGATGAATTTTGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAA-TTCGTGGATT
*
6890553 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTC-GTGGATT
* * * *
6890608 TGCACACATAGTACCTGTACGATTATTCATCAACTCATGATAAATTCTGTGAATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTC-GTGGATT
*
6890663 TGCACACATAGTGCCTGTA-GGTTTATTCATCAACTAATGATGAATCTCGTGGATT
1 TGCACACATAGTGCCTGTACGG-TTATTCATCAACTCATGATGAAT-TCGTGGATT
* * **
6890718 TGCACACATAGTGTCTGTACGGTTATTCATTAACTCATGATGAATTCTGTAAATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTC-GTGGATT
* * * *
6890773 TGCACACATAGTGCTTGTAAGGTTATTCATCAACTCATGATGAATTCCATGAATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATT-CGTGGATT
* * *
6890828 TGCACACATAGTGCCTGTACGGTTATTCGTCAACTCATGATGAATTTTGTGAATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAA-TTCGTGGATT
** *** * *
6890883 TGCACACATAGTATC-GTATAATTATTCATCAACTAATGATGAATTTTGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAA-TTCGTGGATT
*
6890937 TGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCAGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTC-GTGGATT
*
6890992 TGCACACATAATGCCTGTA
1 TGCACACATAGTGCCTGTA
6891011 GTACACATAG
Statistics
Matches: 491, Mismatches: 62, Indels: 27
0.85 0.11 0.05
Matches are distributed among these distances:
53 1 0.00
54 92 0.19
55 388 0.79
56 10 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCGTGGATT
Found at i:6890694 original size:165 final size:165
Alignment explanation
Indices: 6890389--6891010 Score: 817
Period size: 165 Copynumber: 3.8 Consensus size: 165
6890379 TTTATTAAGA
* * * **
6890389 TGCACACGTAGTGCCTATACGG-TAGTTCATCAACTCATGATGAATTATGTGGGTTAT--ACACA
1 TGCACACATAGTGCCTGTACGGTTA-TTCATCAACTCATGATGAATTCTGTGAATT-TGCACACA
* * * *
6890451 TCGTGCATGTATGGTTATTCATCAACTAATGATGAATTACATG-G-ATTTGCACACATAGTGCTT
64 TAGTGCATGTACGGTTATTCATCAACTCATGATGAATT-C-TGTGAATTTGCACACATAGTGCCT
*
6890514 GTACGGTTGTTCATCAACTCATGATGAATTTTGTGGATT
127 GTACGGTTATTCATCAACTCATGATGAATTTTGTGGATT
6890553 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATA
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATA
* * * *
6890618 GTACCTGTACGATTATTCATCAACTCATGATAAATTCTGTGAATTTGCACACATAGTGCCTGTA-
66 GTGCATGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATAGTGCCTGTAC
* * *
6890682 GGTTTATTCATCAACTAATGATGAATCTCGTGGATT
131 GG-TTATTCATCAACTCATGATGAATTTTGTGGATT
* * *
6890718 TGCACACATAGTGTCTGTACGGTTATTCATTAACTCATGATGAATTCTGTAAATTTGCACACATA
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATA
* * **
6890783 GTGCTTGTAAGGTTATTCATCAACTCATGATGAATTCCATGAATTTGCACACATAGTGCCTGTAC
66 GTGCATGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATAGTGCCTGTAC
* *
6890848 GGTTATTCGTCAACTCATGATGAATTTTGTGAATT
131 GGTTATTCATCAACTCATGATGAATTTTGTGGATT
** *** * * *
6890883 TGCACACATAGTATC-GTATAATTATTCATCAACTAATGATGAATTTTGTGGATTTGCACACATA
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATA
* * *
6890947 GTGCATGTACGGTTATTCATCAACTCATGATGAATTCAGTGGATTTGCACACATAATGCCTGTA
66 GTGCATGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATAGTGCCTGTA
6891011 GTACACATAG
Statistics
Matches: 404, Mismatches: 47, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
163 3 0.01
164 150 0.37
165 249 0.62
166 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (165 bp):
TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATA
GTGCATGTACGGTTATTCATCAACTCATGATGAATTCTGTGAATTTGCACACATAGTGCCTGTAC
GGTTATTCATCAACTCATGATGAATTTTGTGGATT
Found at i:6891379 original size:22 final size:19
Alignment explanation
Indices: 6891352--6891405 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 19
6891342 TACCCCTACC
6891352 ATGGTATCGATACTACTATAAT
1 ATGGTATCGATACT-CTAT--T
*
6891374 ATGGTACCGATACTCTATT
1 ATGGTATCGATACTCTATT
*
6891393 ACGGTATCGATAC
1 ATGGTATCGATAC
6891406 CATTTTTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 12 0.41
21 4 0.14
22 13 0.45
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (19 bp):
ATGGTATCGATACTCTATT
Found at i:6893369 original size:21 final size:22
Alignment explanation
Indices: 6893345--6893388 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
6893335 ATACCAAAAC
* *
6893345 AAAACAAAT-AAATAAATATTA
1 AAAAAAAATAAAAAAAATATTA
6893366 AAAAAAAATAAAAAAAATATTA
1 AAAAAAAATAAAAAAAATATTA
6893388 A
1 A
6893389 TTAATTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (22 bp):
AAAAAAAATAAAAAAAATATTA
Found at i:6893734 original size:9 final size:9
Alignment explanation
Indices: 6893696--6893920 Score: 62
Period size: 9 Copynumber: 25.7 Consensus size: 9
6893686 TTTCAAAATA
*
6893696 TATTATAAT
1 TATTATATT
*
6893705 TATAATATT
1 TATTATATT
*
6893714 TTTTATTATT
1 TATTA-TATT
6893724 TATTATATT
1 TATTATATT
*
6893733 TAATATATT
1 TATTATATT
*
6893742 T-TTA-ATA
1 TATTATATT
**
6893749 TATTATACA
1 TATTATATT
* *
6893758 TATAATTTT
1 TATTATATT
6893767 TCATTAT-TT
1 T-ATTATATT
* *
6893776 CA--AAATT
1 TATTATATT
** * *
6893783 TACAAAATA
1 TATTATATT
*
6893792 TATTATAAT
1 TATTATATT
6893801 TATTAT-TT
1 TATTATATT
**
6893809 ATAAAATATT
1 -TATTATATT
* *
6893819 TATTTTAAT
1 TATTATATT
*
6893828 TACTATA-T
1 TATTATATT
*
6893836 TACTATATT
1 TATTATATT
6893845 TATT-TA-T
1 TATTATATT
6893852 TATTATATT
1 TATTATATT
*
6893861 T-TAATTATT
1 TATTA-TATT
6893870 TATTATATT
1 TATTATATT
*
6893879 TAATA-ATT
1 TATTATATT
*
6893887 AATATTATTAAT
1 --TATTA-TATT
6893899 TATTAT-TT
1 TATTATATT
6893907 TATT-TATT
1 TATTATATT
*
6893915 TGTTAT
1 TATTAT
6893921 TAATTTCAAT
Statistics
Matches: 156, Mismatches: 40, Indels: 40
0.66 0.17 0.17
Matches are distributed among these distances:
6 1 0.01
7 12 0.08
8 34 0.22
9 82 0.53
10 25 0.16
12 2 0.01
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTATATT
Found at i:6893754 original size:28 final size:27
Alignment explanation
Indices: 6893692--6893754 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
6893682 TAAATTTCAA
6893692 AATATATTA-TAATTATAATATTTTTT
1 AATATATTATTAATTATAATATTTTTT
*
6893718 ATTAT-TTATTATATT-TAATATATTTTT
1 AATATATTATTA-ATTATAATAT-TTTTT
6893745 AATATATTAT
1 AATATATTAT
6893755 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 3 0.10
26 12 0.39
27 12 0.39
28 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
AATATATTATTAATTATAATATTTTTT
Found at i:6893858 original size:16 final size:16
Alignment explanation
Indices: 6893833--6893931 Score: 85
Period size: 16 Copynumber: 6.1 Consensus size: 16
6893823 TTAATTACTA
* *
6893833 TATTACTATATTTATT
1 TATTATTATATTTAAT
6893849 TATTATTATATTTTAAT
1 TATTATTATA-TTTAAT
6893866 TATTTATTATATTTAAT
1 TA-TTATTATATTTAAT
* *
6893883 AATTAATAT-TATTAAT
1 TATTATTATAT-TTAAT
* *
6893899 TATTATTTTATTTATT
1 TATTATTATATTTAAT
*
6893915 TGTTATTA-ATTTCAAT
1 TATTATTATATTT-AAT
6893931 T
1 T
6893932 TGAAAGGTCC
Statistics
Matches: 67, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
15 5 0.07
16 39 0.58
17 15 0.22
18 8 0.12
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (16 bp):
TATTATTATATTTAAT
Found at i:6897571 original size:29 final size:29
Alignment explanation
Indices: 6897502--6897572 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
6897492 GACTTGTATG
* *
6897502 ACAATTTATAACACTTTTGGGAGGCTGAT
1 ACAATTTCTAAAACTTTTGGGAGGCTGAT
* *
6897531 TCAATTTTTAAAACTTTTGGGAGGCT-A-
1 ACAATTTCTAAAACTTTTGGGAGGCTGAT
6897558 ACACATTTCCTAAAA
1 ACA-ATTT-CTAAAA
6897573 TTTGCAATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 2 0.06
28 5 0.14
29 28 0.80
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (29 bp):
ACAATTTCTAAAACTTTTGGGAGGCTGAT
Found at i:6903065 original size:66 final size:66
Alignment explanation
Indices: 6902959--6903103 Score: 265
Period size: 66 Copynumber: 2.2 Consensus size: 66
6902949 CTTTAACCAA
*
6902959 ACACGGTAATCTTACATTCTTGTTAAACCAACCAAACACAAAATACAATATTCCAGTAATCCTAT
1 ACACGGTAATCTTACATTCTTGTTAAACCAACCAAACACAAAATACAACATTCCAGTAATCCTAT
6903024 T
66 T
6903025 ACACGGTAATCTTACATTCTTGTTAAACCAACCAAACACAAAATACAACATTCCAGTAATCCTAT
1 ACACGGTAATCTTACATTCTTGTTAAACCAACCAAACACAAAATACAACATTCCAGTAATCCTAT
6903090 T
66 T
6903091 AC-CTGGTAATCTT
1 ACAC-GGTAATCTT
6903104 TTATTCCCAC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 1 0.01
66 76 0.99
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (66 bp):
ACACGGTAATCTTACATTCTTGTTAAACCAACCAAACACAAAATACAACATTCCAGTAATCCTAT
T
Found at i:6903118 original size:20 final size:20
Alignment explanation
Indices: 6903093--6903130 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6903083 ATCCTATTAC
*
6903093 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTATATTCCCA
6903113 CTGGTAATCTTATATTCC
1 CTGGTAATCTTATATTCC
6903131 GTAAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.45
Consensus pattern (20 bp):
CTGGTAATCTTATATTCCCA
Found at i:6903647 original size:21 final size:20
Alignment explanation
Indices: 6903622--6903661 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6903612 GACATTATAA
*
6903622 TAGTTTAAAATTTGACAAAAC
1 TAGTTT-AAATATGACAAAAC
*
6903643 TAGTTTCAATATGACAAAA
1 TAGTTTAAATATGACAAAA
6903662 TCGGTAAACG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
TAGTTTAAATATGACAAAAC
Found at i:6903751 original size:193 final size:193
Alignment explanation
Indices: 6903528--6903909 Score: 568
Period size: 193 Copynumber: 2.0 Consensus size: 193
6903518 TACACACCAA
* * *
6903528 ATTATCAATACTTTAGGAATTTAAAAGAATTGTAATAATAGCGACTATAAAGTATTAATATTTTA
1 ATTATCAATACTTTAGGAATTTAAAAGAATTGCAATAATAGCGACTATAAAGTATCAATACTTTA
* * * *
6903593 GAAACATGTATCGATACATGACATTATAATAGTTTAAAATTTGACAAAACTAGTTTCAATATGAC
66 GAAACATGTATAGATACATGACAATATAACAGGTTAAAATTTGACAAAACTAGTTTCAATATGAC
6903658 AAAATCGGTAAA-CGCTACCGGATATGTTGAAGATATCGATAATTTTATAAGTATATGTATCAT
131 AAAAT-GGTAAAGCGCTACCGGATATGTTGAAGATATCGATAATTTTATAAGTATATGTATCAT
* * *
6903721 ATTATCGATACTTTAGGAATTTAAAAGAATTGCAATAATAGCGCCTATAAAGTATCGATACTTTA
1 ATTATCAATACTTTAGGAATTTAAAAGAATTGCAATAATAGCGACTATAAAGTATCAATACTTTA
* * * * *
6903786 TAAACATGTATATATACTTGACAATATAACAGGTTAAAATTTGACAAAATTGGTTTCAATATGAC
66 GAAACATGTATAGATACATGACAATATAACAGGTTAAAATTTGACAAAACTAGTTTCAATATGAC
* * * * *
6903851 AAACTGGTAAAGCGCTATCGGGTATGTTGAAGGTATCGATACTTTTATAAGTATATGTA
131 AAAATGGTAAAGCGCTACCGGATATGTTGAAGATATCGATAATTTTATAAGTATATGTA
6903910 ACATCCCAAA
Statistics
Matches: 168, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
192 6 0.04
193 162 0.96
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (193 bp):
ATTATCAATACTTTAGGAATTTAAAAGAATTGCAATAATAGCGACTATAAAGTATCAATACTTTA
GAAACATGTATAGATACATGACAATATAACAGGTTAAAATTTGACAAAACTAGTTTCAATATGAC
AAAATGGTAAAGCGCTACCGGATATGTTGAAGATATCGATAATTTTATAAGTATATGTATCAT
Found at i:6909273 original size:21 final size:21
Alignment explanation
Indices: 6909247--6909300 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
6909237 TCTTTAGGTG
6909247 TTATATAAGCTTAAGGAAAGC
1 TTATATAAGCTTAAGGAAAGC
6909268 TTATATAAGCTTAAGGAAAGC
1 TTATATAAGCTTAAGGAAAGC
6909289 TTATATAAGCTT
1 TTATATAAGCTT
6909301 TAAACATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (21 bp):
TTATATAAGCTTAAGGAAAGC
Found at i:6910156 original size:2 final size:2
Alignment explanation
Indices: 6910149--6910190 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6910139 GTTTGACATG
6910149 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6910191 TTTGGTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6914774 original size:26 final size:23
Alignment explanation
Indices: 6914745--6914823 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
6914735 GGAGTGGTAT
*
6914745 TTCGGGACATATGTCATATGTGGTCA
1 TTCGGGACAT-T-TC-TACGTGGTCA
*
6914771 TTCGGCACATTTCTACGTGGTCA
1 TTCGGGACATTTCTACGTGGTCA
* * *
6914794 TTCAGGACATTTCTACGCGGTCC
1 TTCGGGACATTTCTACGTGGTCA
6914817 TTCGGGA
1 TTCGGGA
6914824 TAAATATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 34 0.74
24 2 0.04
25 1 0.02
26 9 0.20
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (23 bp):
TTCGGGACATTTCTACGTGGTCA
Found at i:6915620 original size:21 final size:22
Alignment explanation
Indices: 6915594--6915634 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6915584 AGCAGTACTG
*
6915594 TAGCA-GGGTATCGGTTCCCTA
1 TAGCAGGGGAATCGGTTCCCTA
6915615 TAGCAGGGGAATCGGTTCCC
1 TAGCAGGGGAATCGGTTCCC
6915635 CTCTGATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (22 bp):
TAGCAGGGGAATCGGTTCCCTA
Found at i:6917129 original size:20 final size:19
Alignment explanation
Indices: 6917097--6917137 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
6917087 AAAAAATAGA
6917097 TTTTTAAGTTATAATTTTT
1 TTTTTAAGTTATAATTTTT
* *
6917116 TTTTTAGGTGTATAGTTTTT
1 TTTTTAAGT-TATAATTTTT
6917136 TT
1 TT
6917138 ATCAATTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (19 bp):
TTTTTAAGTTATAATTTTT
Found at i:6918246 original size:2 final size:2
Alignment explanation
Indices: 6918239--6918268 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6918229 TAAGTCTTAT
6918239 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6918269 CACGTTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6919794 original size:41 final size:42
Alignment explanation
Indices: 6919748--6919863 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
6919738 GCGTTTCTCA
6919748 ACAAACGCTGCTAAA-ACTC-GTACTTTAGTGGCATTTATTTG
1 ACAAACGCTGCTAAATA-TCAGTACTTTAGTGGCATTTATTTG
* ** *
6919789 ACAAACACCACTAAATATCAGTACTTTAGTGGCGTTTATTTG
1 ACAAACGCTGCTAAATATCAGTACTTTAGTGGCATTTATTTG
6919831 ACAAACG-TCGCTAAATATCAGTACTTTAGTGGC
1 ACAAACGCT-GCTAAATATCAGTACTTTAGTGGC
6919864 GTTTGTAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
41 14 0.22
42 51 0.78
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (42 bp):
ACAAACGCTGCTAAATATCAGTACTTTAGTGGCATTTATTTG
Found at i:6919864 original size:42 final size:42
Alignment explanation
Indices: 6919767--6919867 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
6919757 GCTAAAACTC
*
6919767 GTACTTTAGTGGCATTTATTTGACAAACACCACTAAATATCA
1 GTACTTTAGTGGCGTTTATTTGACAAACACCACTAAATATCA
** *
6919809 GTACTTTAGTGGCGTTTATTTGACAAACGTCGCTAAATATCA
1 GTACTTTAGTGGCGTTTATTTGACAAACACCACTAAATATCA
6919851 GTACTTTAGTGGCGTTT
1 GTACTTTAGTGGCGTTT
6919868 GTAAACAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (42 bp):
GTACTTTAGTGGCGTTTATTTGACAAACACCACTAAATATCA
Found at i:6922508 original size:42 final size:42
Alignment explanation
Indices: 6922443--6922662 Score: 271
Period size: 42 Copynumber: 5.2 Consensus size: 42
6922433 AAGGTAATTA
* *
6922443 GCGGCGTTTGTAT-AAAAAACGCCGCTATAGATATGACCTTTG
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATGACCTTTT
* *
6922485 GCGGCGTTTGTTCCAAAACCGCCGCTATAGATCTGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
* *
6922527 GCGGCATTTGTTCCAAAAACACCGCTATAGATATGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
* * * * * *
6922569 GCGGCGTTTGTTCTAGAAACGACACTATAAATATAACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
* * *
6922611 GCGGCGTTTGTTCCAAAAACGCTGCTATAGATCTTGACCTATT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGAT-ATGACCTTTT
*
6922654 GTGGCGTTT
1 GCGGCGTTT
6922663 TTTATTCTCA
Statistics
Matches: 150, Mismatches: 26, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
41 1 0.01
42 134 0.89
43 15 0.10
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
Found at i:6925356 original size:20 final size:21
Alignment explanation
Indices: 6925331--6925382 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
6925321 TTTTCCCAAT
*
6925331 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
6925351 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
6925372 TCGCAATGCGA
1 TCGCAATGCGA
6925383 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:6925396 original size:20 final size:20
Alignment explanation
Indices: 6925371--6925484 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
6925361 AATTGGGAAA
*
6925371 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
6925391 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * * *
6925411 ATCGTAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
6925432 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
6925452 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
6925472 TTCGCAACGCGAT
1 ATCGCAACGCGAT
6925485 TTACATAGCA
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.03
20 63 0.80
21 12 0.15
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:6925484 original size:61 final size:61
Alignment explanation
Indices: 6925368--6925484 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
6925358 GCGAATTGGG
* * * * * *
6925368 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGTAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
6925429 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
6925485 TTACATAGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:6926059 original size:19 final size:19
Alignment explanation
Indices: 6926035--6926078 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
6926025 CAACGAGAGG
*
6926035 ATCGCAACGCGAAATAAAA
1 ATCGCAACGCGAAACAAAA
*
6926054 ATCGCAACGCGAAACCAAA
1 ATCGCAACGCGAAACAAAA
6926073 ATCGCA
1 ATCGCA
6926079 TTGCGATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (19 bp):
ATCGCAACGCGAAACAAAA
Found at i:6926096 original size:19 final size:19
Alignment explanation
Indices: 6926074--6926219 Score: 114
Period size: 19 Copynumber: 8.1 Consensus size: 19
6926064 GAAACCAAAA
*
6926074 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
6926093 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
6926107 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
6926126 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
6926145 TCGCATTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
6926159 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
6926178 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
6926198 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
6926218 TC
1 TC
6926220 AACCAAAAGA
Statistics
Matches: 100, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
14 19 0.19
16 5 0.05
17 5 0.05
19 39 0.39
20 31 0.31
21 1 0.01
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:6926157 original size:52 final size:52
Alignment explanation
Indices: 6926074--6926190 Score: 171
Period size: 52 Copynumber: 2.2 Consensus size: 52
6926064 GAAACCAAAA
* ** * **
6926074 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATT
6926126 TCGCGTTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATT
6926178 TCCGCGTTGCGAT
1 T-CGCGTTGCGAT
6926191 TCTCATTATC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 47 0.81
53 11 0.19
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (52 bp):
TCGCGTTGCGATAGTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATT
Found at i:6926166 original size:33 final size:34
Alignment explanation
Indices: 6926129--6926194 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
6926119 TTTCATTTCG
6926129 CGTTGCGATAGTCATTT-CGCATTGCGATTCTCT
1 CGTTGCGATAGTCATTTCCGCATTGCGATTCTCT
*
6926162 CGTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 CGTTGCGATAGTCATTTCCGCATTGCGATTCTC
6926195 ATTATCTCGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 17 0.55
34 14 0.45
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.38
Consensus pattern (34 bp):
CGTTGCGATAGTCATTTCCGCATTGCGATTCTCT
Found at i:6928389 original size:21 final size:21
Alignment explanation
Indices: 6928365--6928431 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
6928355 TCATTCCTCG
6928365 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
6928386 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
6928407 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
6928428 AGAG
1 AGAG
6928432 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:6928389 original size:42 final size:42
Alignment explanation
Indices: 6928313--6928431 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
6928303 GACTCGCCTG
* * * * * * *
6928313 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
6928355 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
6928397 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
6928432 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:6929215 original size:22 final size:22
Alignment explanation
Indices: 6929185--6929228 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6929175 GATGGAGATA
*
6929185 GACGGATTTCGTCGGAGATGGG
1 GACGAATTTCGTCGGAGATGGG
6929207 GACGAATTTCGTCGGAGATGGG
1 GACGAATTTCGTCGGAGATGGG
6929229 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.14, G:0.43, T:0.23
Consensus pattern (22 bp):
GACGAATTTCGTCGGAGATGGG
Found at i:6929442 original size:20 final size:20
Alignment explanation
Indices: 6929417--6929468 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
6929407 ATTATGTATT
6929417 ATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGAAAGTCAGA
*
6929437 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTCAGA
*
6929457 ATCTCGTTGCGA
1 ATCGCGTTGCGA
6929469 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTCAGA
Found at i:6929502 original size:20 final size:20
Alignment explanation
Indices: 6929477--6929530 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
6929467 GATTTTGTAT
6929477 TATCGCATTGCGATAGAAAG
1 TATCGCATTGCGATAGAAAG
**
6929497 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGAAAG
6929517 TATCGCATTGCGAT
1 TATCGCATTGCGAT
6929531 TTTCCCAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (20 bp):
TATCGCATTGCGATAGAAAG
Found at i:6929502 original size:61 final size:61
Alignment explanation
Indices: 6929399--6929533 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 61
6929389 TTTGAAAATT
* * ** *
6929399 GCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATC
1 GCATTGCGATTTTGTATTATCGCATTGCGAAAGAAAGAATCGCATTGCGAAAGTCAGTATC
* * * * *
6929460 TCGTTGCGATTTTGTATTATCGCATTGCGATAGAAAGTATCGCATTGCGATAGTCAGTATC
1 GCATTGCGATTTTGTATTATCGCATTGCGAAAGAAAGAATCGCATTGCGAAAGTCAGTATC
6929521 GCATTGCGATTTT
1 GCATTGCGATTTT
6929534 CCCAATTCGC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (61 bp):
GCATTGCGATTTTGTATTATCGCATTGCGAAAGAAAGAATCGCATTGCGAAAGTCAGTATC
Found at i:6929549 original size:61 final size:61
Alignment explanation
Indices: 6929416--6929551 Score: 148
Period size: 61 Copynumber: 2.2 Consensus size: 61
6929406 GATTATGTAT
* ** * * * ** *
6929416 TATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGAAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAA
* * *
6929477 TATCGCATTGCGATAGAAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGAAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAA
6929539 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
6929552 TTACTTATTC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (61 bp):
TATCGCGTTGCGATAGAAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAA
Found at i:6929641 original size:21 final size:21
Alignment explanation
Indices: 6929601--6929641 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6929591 ACTATAGACC
** *
6929601 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
6929622 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
6929642 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:6930988 original size:3 final size:3
Alignment explanation
Indices: 6930980--6931014 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
6930970 GCATATAAAT
6930980 TAA TAA TAA TAA TTAA TAA TAA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA
6931015 TTAAAAGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6930995 original size:13 final size:13
Alignment explanation
Indices: 6930977--6931018 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
6930967 CCTGCATATA
6930977 AATTAATAATAAT
1 AATTAATAATAAT
6930990 AATTAATAATAAT
1 AATTAATAATAAT
6931003 AA-TAATAA-AAT
1 AATTAATAATAAT
6931014 -ATTAA
1 AATTAA
6931019 AAGACATGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 6 0.21
12 6 0.21
13 15 0.54
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATTAATAATAAT
Found at i:6937144 original size:21 final size:21
Alignment explanation
Indices: 6937111--6937158 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
6937101 TAATTTTCAA
* *
6937111 ACATTATTGCACCTAATTTTG
1 ACATTGTTACACCTAATTTTG
6937132 ACATTGTTACACCTAATTTTG
1 ACATTGTTACACCTAATTTTG
6937153 ACATTG
1 ACATTG
6937159 CAATATTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (21 bp):
ACATTGTTACACCTAATTTTG
Found at i:6938010 original size:25 final size:26
Alignment explanation
Indices: 6937956--6938010 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
6937946 TATAAACATC
*
6937956 AAATACAATAAATAATATTATTTATT
1 AAATAAAATAAATAATATTATTTATT
*
6937982 -AATAAAAT-AATATTATTATTT-TT
1 AAATAAAATAAATAATATTATTTATT
6938005 GAAATA
1 -AAATA
6938011 TTACAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 12 0.48
25 11 0.44
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
AAATAAAATAAATAATATTATTTATT
Found at i:6938069 original size:8 final size:8
Alignment explanation
Indices: 6938058--6938086 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
6938048 AAAATAAAAG
6938058 TATAATAT
1 TATAATAT
6938066 TAT-ATAT
1 TATAATAT
6938073 TATAATAT
1 TATAATAT
6938081 TATAAT
1 TATAAT
6938087 TATAGCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TATAATAT
Found at i:6938078 original size:15 final size:14
Alignment explanation
Indices: 6938058--6938090 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
6938048 AAAATAAAAG
6938058 TATAATATTATATAT
1 TATAATATTATA-AT
6938073 TATAATATTATAAT
1 TATAATATTATAAT
6938087 TATA
1 TATA
6938091 GCAAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAATATTATAAT
Found at i:6941017 original size:90 final size:89
Alignment explanation
Indices: 6940859--6941043 Score: 334
Period size: 90 Copynumber: 2.1 Consensus size: 89
6940849 GATGTCAAGG
* *
6940859 ACTACGCGATGGCGATGGTGATCGGAGAAGGCGCCGGCGACATATTAAGGTTAGGATTTAGTATT
1 ACTATGCGATGGCGATGGTGATCGGAGAAGGCGCCGGCGACAGATTAAGGTTAGGATTTAGTATT
6940924 TTGGGGTTGTTTTATAATATAAAAA
66 TT-GGGTTGTTTTATAATATAAAAA
*
6940949 ACTATGCGATGGCGGTGGTGATCGGAGAAGGCGCCGGCGACAGATTAAGGTTAGGATTTAGTATT
1 ACTATGCGATGGCGATGGTGATCGGAGAAGGCGCCGGCGACAGATTAAGGTTAGGATTTAGTATT
6941014 TTGGGTTGTTTTATAATATAAAAA
66 TTGGGTTGTTTTATAATATAAAAA
6941038 ACTATG
1 ACTATG
6941044 ATTTTTTTAT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
89 28 0.30
90 64 0.70
ACGTcount: A:0.29, C:0.11, G:0.30, T:0.30
Consensus pattern (89 bp):
ACTATGCGATGGCGATGGTGATCGGAGAAGGCGCCGGCGACAGATTAAGGTTAGGATTTAGTATT
TTGGGTTGTTTTATAATATAAAAA
Found at i:6941259 original size:22 final size:21
Alignment explanation
Indices: 6941204--6941253 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 21
6941194 GCCTTCTAAA
6941204 ATAATAAAAATTTACTCAAAC
1 ATAATAAAAATTTACTCAAAC
6941225 ATAATAAAAATTTACTCAAAC
1 ATAATAAAAATTTACTCAAAC
6941246 ATTAATAA
1 A-TAATAA
6941254 TGATTTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAATAAAAATTTACTCAAAC
Found at i:6941364 original size:36 final size:35
Alignment explanation
Indices: 6941324--6941443 Score: 86
Period size: 34 Copynumber: 3.3 Consensus size: 35
6941314 TTGAGTTTGA
6941324 AAAATAATAAATAATTTAATATTATAAAATTGAACC
1 AAAATAA-AAATAATTTAATATTATAAAATTGAACC
* * * **
6941360 AAAAT-AAAAT--TTTCAGTTTTTATAGAAGTT-AAGTTGA
1 AAAATAAAAATAATTT-A-ATATTATA-AAATTGAA---CC
*
6941397 AAAATAATAAATAATTTAATATTATAAAATCGAACC
1 AAAATAA-AAATAATTTAATATTATAAAATTGAACC
6941433 AAAATAAAAAT
1 AAAATAAAAAT
6941444 TTCAGTTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 23
0.65 0.11 0.24
Matches are distributed among these distances:
32 3 0.05
33 1 0.02
34 12 0.19
35 9 0.15
36 12 0.19
37 5 0.08
38 4 0.06
39 12 0.19
40 1 0.02
41 3 0.05
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (35 bp):
AAAATAAAAATAATTTAATATTATAAAATTGAACC
Found at i:6941404 original size:73 final size:73
Alignment explanation
Indices: 6941320--6941455 Score: 254
Period size: 73 Copynumber: 1.9 Consensus size: 73
6941310 GATATTGAGT
* *
6941320 TTGAAAAATAATAAATAATTTAATATTATAAAATTGAACCAAAATAAAATTTTCAGTTTTTATAG
1 TTGAAAAATAATAAATAATTTAATATTATAAAATCGAACCAAAATAAAAATTTCAGTTTTTATAG
6941385 AAGTTAAG
66 AAGTTAAG
6941393 TTGAAAAATAATAAATAATTTAATATTATAAAATCGAACCAAAATAAAAATTTCAGTTTTTAT
1 TTGAAAAATAATAAATAATTTAATATTATAAAATCGAACCAAAATAAAAATTTCAGTTTTTAT
6941456 CATTTTCAGA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 61 1.00
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (73 bp):
TTGAAAAATAATAAATAATTTAATATTATAAAATCGAACCAAAATAAAAATTTCAGTTTTTATAG
AAGTTAAG
Found at i:6942825 original size:22 final size:21
Alignment explanation
Indices: 6942799--6942851 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
6942789 TTTATTTAAT
6942799 ATTTATTAATTATATATATTTC
1 ATTTATTAATTATATAT-TTTC
* *
6942821 ATTTACTACCATTATATATTTTT
1 ATTTATTA--ATTATATATTTTC
6942844 A-TTATTAA
1 ATTTATTAA
6942852 ATTTCTGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 1 0.04
22 12 0.46
23 4 0.15
24 9 0.35
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTATTAATTATATATTTTC
Found at i:6943327 original size:17 final size:17
Alignment explanation
Indices: 6943300--6943338 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
6943290 AATTTACAAT
6943300 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
6943316 TAATTATAAATAATATC
1 TAATTATAAATAATATC
6943333 TAATTA
1 TAATTA
6943339 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:6948027 original size:41 final size:41
Alignment explanation
Indices: 6947976--6948081 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
6947966 CATTGCGCGT
*
6947976 TTTTCCATTTCGCGTTGCTATAGTTGAAAATAGCGTTGCGA
1 TTTTCCATTTCGCGTTGCAATAGTTGAAAATAGCGTTGCGA
* * *
6948017 TTTTCCATTTCGTGTTGCGATAGTTGAAAATCGCGTTGCGA
1 TTTTCCATTTCGCGTTGCAATAGTTGAAAATAGCGTTGCGA
6948058 TTTTCCATTTCGCGTTGCAATAGT
1 TTTTCCATTTCGCGTTGCAATAGT
6948082 CTACAGTTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (41 bp):
TTTTCCATTTCGCGTTGCAATAGTTGAAAATAGCGTTGCGA
Found at i:6948035 original size:20 final size:20
Alignment explanation
Indices: 6948008--6948075 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
6947998 GTTGAAAATA
6948008 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
* * ** **
6948028 GTGTTGCGATAGTTGAAAATC
1 GCGTTGCGAT-TTTCCATTTC
6948049 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTCCATTTC
6948069 GCGTTGC
1 GCGTTGC
6948076 AATAGTCTAC
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.40
Consensus pattern (20 bp):
GCGTTGCGATTTTCCATTTC
Found at i:6948056 original size:21 final size:21
Alignment explanation
Indices: 6947985--6948058 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
6947975 TTTTTCCATT
*
6947985 TCGCGTTGCTATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* * ** **
6948006 TAGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
*
6948026 TCGTGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
6948047 TCGCGTTGCGAT
1 TCGCGTTGCGAT
6948059 TTTCCATTTC
Statistics
Matches: 37, Mismatches: 15, Indels: 2
0.69 0.28 0.04
Matches are distributed among these distances:
20 13 0.35
21 24 0.65
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:6948247 original size:5 final size:6
Alignment explanation
Indices: 6948211--6948244 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
6948201 GAAGACACGT
6948211 ACGACC ACGACC ACGACC ACGACC -CGACC -CGACC
1 ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC
6948245 CGAGACGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.29, C:0.53, G:0.18, T:0.00
Consensus pattern (6 bp):
ACGACC
Found at i:6949113 original size:6 final size:6
Alignment explanation
Indices: 6949104--6949140 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
6949094 GTCGTGGTCG
6949104 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
1 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
6949141 ACGTGTCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (6 bp):
TGGTAA
Found at i:6949241 original size:19 final size:19
Alignment explanation
Indices: 6949217--6949264 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
6949207 TTTTTTAACT
*
6949217 ATCGCAACGAATTTGGGAA
1 ATCGCAACGAATTTGGAAA
6949236 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
6949255 ATCGCAACGA
1 ATCGCAACGA
6949265 CAACTATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (19 bp):
ATCGCAACGAATTTGGAAA
Found at i:6949903 original size:63 final size:63
Alignment explanation
Indices: 6949824--6949950 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 63
6949814 TTTCGTCCGT
*
6949824 TAAATTGTTATAAGTACATCTCTCCTTATAATTTTATAAATTTATTCTT-TTAACATAAAATCA
1 TAAATTGTTATAAGTACATCTCCCCTTATAATTTTATAAATTTATT-TTCTTAACATAAAATCA
* *
6949887 TAAATTTTTATAAGTACATGTCCCCTTATAATTTTATAAATTTATTTTCTTAACATAAAATCA
1 TAAATTGTTATAAGTACATCTCCCCTTATAATTTTATAAATTTATTTTCTTAACATAAAATCA
6949950 T
1 T
6949951 GTTACATAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 2 0.03
63 58 0.97
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (63 bp):
TAAATTGTTATAAGTACATCTCCCCTTATAATTTTATAAATTTATTTTCTTAACATAAAATCA
Found at i:6952884 original size:13 final size:13
Alignment explanation
Indices: 6952866--6952896 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
6952856 ATAATTACGA
6952866 AAATTAAAAATTT
1 AAATTAAAAATTT
6952879 AAATT-AAAATTT
1 AAATTAAAAATTT
6952891 AAATTA
1 AAATTA
6952897 TTCGATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AAATTAAAAATTT
Found at i:6954355 original size:39 final size:38
Alignment explanation
Indices: 6954312--6954390 Score: 88
Period size: 38 Copynumber: 2.1 Consensus size: 38
6954302 TCCAAAAATC
6954312 TATATAAT-ATATATTTTCAAAAGTATTTTAAAAATTATA
1 TATATAATAAT-TATTTTCAAAA-TATTTTAAAAATTATA
* * * * *
6954351 TATATTATAATTTTTTTGAAAATGTTTTCAAAATTATA
1 TATATAATAATTATTTTCAAAATATTTTAAAAATTATA
6954389 TA
1 TA
6954391 GTTTTAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 16 0.47
39 16 0.47
40 2 0.06
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (38 bp):
TATATAATAATTATTTTCAAAATATTTTAAAAATTATA
Found at i:6954516 original size:27 final size:28
Alignment explanation
Indices: 6954457--6954519 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
6954447 ACTATATAAT
*
6954457 ATATATGTTTTCAAAATGTTTTTAAAAA
1 ATATATATTTTCAAAATGTTTTTAAAAA
*
6954485 CTATATATTTTCAAAATG-TTTTAAAAA
1 ATATATATTTTCAAAATGTTTTTAAAAA
6954512 ATATATAT
1 ATATATAT
6954520 AATATATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 16 0.50
28 16 0.50
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (28 bp):
ATATATATTTTCAAAATGTTTTTAAAAA
Found at i:6954540 original size:39 final size:39
Alignment explanation
Indices: 6954486--6954649 Score: 165
Period size: 39 Copynumber: 4.2 Consensus size: 39
6954476 TTTTAAAAAC
6954486 TATATATTTTCAAAATGTTTTAAAAAATATATATA-ATA
1 TATATATTTTCAAAATGTTTTAAAAAATATATATATATA
* *
6954524 TATATATTTTCAAAAAT-ATTTAAAAAAAACTATATAT-TA
1 TATATATTTTC-AAAATGTTTTAAAAAATA-TATATATATA
* * *
6954563 TATTTATTTTCAAAATGTTTTTTTAAAACTATATA-ATATA
1 TATATATTTTCAAAATG--TTTTAAAAAATATATATATATA
* * * * *
6954603 TAAATGTTTTCAAACATATTTTCAAAACTATATATATATA
1 TATATATTTTCAAA-ATGTTTTAAAAAATATATATATATA
6954643 TATATAT
1 TATATAT
6954650 ATATATATAT
Statistics
Matches: 103, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
38 26 0.25
39 40 0.39
40 27 0.26
41 10 0.10
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (39 bp):
TATATATTTTCAAAATGTTTTAAAAAATATATATATATA
Found at i:6954638 original size:2 final size:2
Alignment explanation
Indices: 6954631--6954661 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6954621 TTTTCAAAAC
6954631 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6954662 TCAAAAACCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6955393 original size:85 final size:83
Alignment explanation
Indices: 6955050--6956076 Score: 995
Period size: 85 Copynumber: 12.4 Consensus size: 83
6955040 AATTTATTGA
* * * * * *** * *
6955050 CAGATAGCCCTTCTTGCCTTGAGTTATGCTATAAATGATGTG-CCTTTTAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* * *
6955114 ACTCAAAGGCCTTTGGTG
66 ACTCGAGGGTCTTTGGTG
* * * * * *
6955132 ACAGATAACCCTTTTAGCCTTGAGTTATGGTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCG
1 -CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
6955197 AACTCGAGGGTCTTT-G-G
65 AACTCGAGGGTCTTTGGTG
* * * * * *
6955214 CAGATAGCCCTTCTCGACTTAAGCTATGCTGTAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
6955278 ACTCGAAGGTCTTTGGTTGG
66 ACTCGAGGGTCTTTGG-T-G
* * * * *
6955298 TAGATAACCCTTCTCGATTTAAGTTATGCTATAAATTACGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
6955363 ACTCGAGAGTCTTTTGGTG
66 ACTCGAGGGTC-TTTGGTG
** * * * * * *
6955382 ACTTATAACCCTTCTAGCCTTGAGTTATGCTATAAATGTTGTGCCCTCGAAGCTGAGTGTAATCA
1 -CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
* *
6955447 AACTTGAGGGT-TTTTG-G
65 AACTCGAGGGTCTTTGGTG
** * * ** *
6955464 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTAG--CTTGGAGCTGAACGTAGTCG
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGT-GCCCTCGAAGCTGAGTGTAATCG
*
6955527 AACTCGAAGGTCTTTGGTTGG
65 AACTCGAGGGTCTTTGG-T-G
* *
6955548 CAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
6955613 ACTTGAGGGTCTTTCGGTG
66 ACTCGAGGGTCTTT-GGTG
* * *
6955632 ACAGATAACCCTTATAGCCTTGAA-TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
1 -CAGATAACCCTTCTCGACTT-AAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
*
6955696 GAACTTGAGGGTCTTT-G-G
64 GAACTCGAGGGTCTTTGGTG
* * * * * * * * * *
6955714 CAGATAGCCCTTCTCGACTTAGGCTATGCTGCAAATGATATACCTTAG-AGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
6955778 ACTCGAAGGTCTTTGGTTGG
66 ACTCGAGGGTCTTTGG-T-G
* * *
6955798 TAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCTCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
6955863 ACTCGAGGGTCTTTTGGTG
66 ACTCGAGGGTC-TTTGGTG
* * * * *
6955882 ACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCT
1 -CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
*
6955947 AACTTGAGGGTCTTT-G-G
65 AACTCGAGGGTCTTTGGTG
* * * * * * *
6955964 CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* *
6956028 ACTCGAAGGTCTTTGTTGG
66 ACTCGAGGGTCTTTGGT-G
* * * *
6956047 CATATAACCCTTCTAGCCTTGAGTTATGCT
1 CAGATAACCCTTCTCGACTTAAGTTATGCT
6956077 ACAAATATTG
Statistics
Matches: 774, Mismatches: 141, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
80 110 0.14
81 144 0.19
82 5 0.01
83 69 0.09
84 150 0.19
85 282 0.36
86 14 0.02
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (83 bp):
CAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
ACTCGAGGGTCTTTGGTG
Found at i:6955440 original size:250 final size:250
Alignment explanation
Indices: 6955050--6956082 Score: 1552
Period size: 250 Copynumber: 4.1 Consensus size: 250
6955040 AATTTATTGA
* * * * * *** * *
6955050 CAGATAGCCCTTCTTGCCTTGAGTTATGCTATAAATGATGTG-CCTTTTAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* * * * * *
6955114 ACTC-AAAGGCCTTTGGTGACAGATAACCCTTTTAGCCTTGAGTTATGGTGTAAATGATGTTCCC
66 ACTCGAGAGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
*
6955178 TCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
131 TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
*
6955243 TGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
196 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
* * * * *
6955298 TAGATAACCCTTCTCGATTTAAGTTATGCTATAAATTACGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
** * * *
6955363 ACTCGAGAGTCTTTTGGTGACTTATAACCCTTCTAGCCTTGAGTTATGCTATAAATGTTGTGCCC
66 ACTCGAGAGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
* * * *
6955428 TCGAAGCTGAGTGTAATCAAACTTGAGGGTTTTTGGCAGATAACCCTTCTCGACTTAAGTTATGC
131 TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
* *
6955493 TACAAATGATGTAG-CTTGGAGCTGAACGTAGTCGAACTCGAAGGTCTTTGGTTGG
196 TGCAAATGATGT-GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
* *
6955548 CAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* * * *
6955613 ACTTGAGGGTCTTTCGGTGACAGATAACCCTTATAGCCTTGAATTATGCTGTAAATGATGTGCCC
66 ACTCGAGAGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
*
6955678 TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAGGCTATGC
131 TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
* * *
6955743 TGCAAATGATATACCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
196 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
* * *
6955798 TAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCTCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
6955863 ACTCGAGGGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
66 ACTCGAGAGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
*
6955928 TCGAAGCTGAGTGTAATCTAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
131 TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
6955993 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GTTGG
196 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
* * * *
6956047 CATATAACCCTTCTAGCCTTGAGTTATGCTACAAAT
1 CAGATAACCCTTCTCGACTTAAGTTATGCTACAAAT
6956083 ATTGTCTTTA
Statistics
Matches: 707, Mismatches: 74, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
248 34 0.05
249 56 0.08
250 616 0.87
251 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (250 bp):
CAGATAACCCTTCTCGACTTAAGTTATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
ACTCGAGAGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCC
TCGAAGCTGAGTGTAATCGAACTTGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
Found at i:6959324 original size:30 final size:30
Alignment explanation
Indices: 6959173--6959329 Score: 115
Period size: 29 Copynumber: 4.9 Consensus size: 30
6959163 ATTATAATTT
* *
6959173 TTTTGAAAATGTTTTCAAAAT-TATATA-G
1 TTTTCAAAATGTTTTAAAAATATATATATG
*
6959201 TTTTAAAAAATGTTTTTAAAACTATATATTATATAAG
1 TTTT-CAAAATG-TTTTAAAA--ATATA-TATAT--G
*
6959238 TTTTCAAAATGATTTCAAAACTATATAATATATATG
1 TTTTCAAAATG-TTT-TAAA--A-AT-ATATATATG
* *
6959274 TTTTCAAAATGTTTTTAAAATCTATATAT-
1 TTTTCAAAATGTTTTAAAAATATATATATG
6959303 TTTTCAAAATGTTTTAAAAA-ATATATA
1 TTTTCAAAATGTTTTAAAAATATATATA
6959330 ATATATATAT
Statistics
Matches: 106, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
28 10 0.09
29 25 0.24
30 14 0.13
31 2 0.02
32 3 0.03
33 2 0.02
34 6 0.06
35 3 0.03
36 21 0.20
37 8 0.08
38 8 0.08
39 4 0.04
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (30 bp):
TTTTCAAAATGTTTTAAAAATATATATATG
Found at i:6959327 original size:28 final size:30
Alignment explanation
Indices: 6959264--6959329 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 30
6959254 AAAACTATAT
6959264 AATATATATGTTTTCAAAATGTTTTTAAAA
1 AATATATATGTTTTCAAAATGTTTTTAAAA
**
6959294 TCTATATAT-TTTTCAAAATG-TTTTAAAA
1 AATATATATGTTTTCAAAATGTTTTTAAAA
6959322 AATATATA
1 AATATATA
6959330 ATATATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 14 0.44
29 11 0.34
30 7 0.22
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (30 bp):
AATATATATGTTTTCAAAATGTTTTTAAAA
Found at i:6959339 original size:39 final size:38
Alignment explanation
Indices: 6959296--6959468 Score: 174
Period size: 41 Copynumber: 4.4 Consensus size: 38
6959286 TTTTAAAATC
6959296 TATATATTTTTCAAAATGTTTTAAAAAATATATA-ATA
1 TATATATTTTTCAAAATGTTTTAAAAAATATATATATA
* *
6959333 TATATA-TTTTCAAAAAT-ATTTAAAAAAAACTATATAT-
1 TATATATTTTTC-AAAATGTTTTAAAAAATA-TATATATA
* *
6959370 TATATTTATTTTCAAAATGTTTTAAAAAAAACTATATAATA
1 TATATAT-TTTTCAAAATGTTTTAAAAAATA-TATAT-ATA
* * *
6959411 TATAAATGTTTTCAAACATGTTTTCAAAACTATATATTATA
1 TATATAT-TTTTCAAA-ATGTTTTAAAAAATATATA-TATA
6959452 TATATATTTTTTCAAAA
1 TATATA-TTTTTCAAAA
6959469 ACCATTTGCA
Statistics
Matches: 114, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
36 15 0.13
37 20 0.18
38 7 0.06
39 22 0.19
40 3 0.03
41 33 0.29
42 14 0.12
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (38 bp):
TATATATTTTTCAAAATGTTTTAAAAAATATATATATA
Found at i:6959367 original size:65 final size:65
Alignment explanation
Indices: 6959238--6959367 Score: 163
Period size: 65 Copynumber: 2.0 Consensus size: 65
6959228 ATTATATAAG
* * * * * ***
6959238 TTTTCAAAATGATTTCAAAACTATATAATATATATGTTTTCAAAATGTTTTTAAAATCTATATAT
1 TTTTCAAAATGATTTAAAAAATATATAATATATATATTTTCAAAATATATTTAAAAAAAATATAT
*
6959303 TTTTCAAAATGTTTTAAAAAATATATAATATATATATTTTCAAAA-ATATTTAAAAAAAACTATA
1 TTTTCAAAATGATTTAAAAAATATATAATATATATATTTTCAAAATATATTTAAAAAAAA-TATA
6959367 T
65 T
6959368 ATTATATTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 9 0.16
65 46 0.84
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (65 bp):
TTTTCAAAATGATTTAAAAAATATATAATATATATATTTTCAAAATATATTTAAAAAAAATATAT
Found at i:6959423 original size:41 final size:40
Alignment explanation
Indices: 6959296--6959468 Score: 173
Period size: 39 Copynumber: 4.4 Consensus size: 40
6959286 TTTTAAAATC
6959296 TATATAT-TTTTCAAAATGTTTT--AAAAAATATAT-A-A
1 TATATATATTTTCAAAATGTTTTAAAAAAAATATATAATA
*
6959331 TATATATATTTTCAAAAAT-ATTTAAAAAAAACTATAT-AT-
1 TATATATATTTTC-AAAATGTTTTAAAAAAAA-TATATAATA
*
6959370 TATATTTATTTTCAAAATGTTTTAAAAAAAACTATATAATA
1 TATATATATTTTCAAAATGTTTTAAAAAAAA-TATATAATA
* * * ** *
6959411 TATAAATGTTTTCAAACATGTTTTCAAAACTATATATTATA
1 TATATATATTTTCAAA-ATGTTTTAAAAAAAATATATAATA
*
6959452 TATATATTTTTTCAAAA
1 TATATATATTTTCAAAA
6959469 ACCATTTGCA
Statistics
Matches: 116, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
35 7 0.06
36 8 0.07
37 5 0.04
38 11 0.09
39 35 0.30
40 3 0.03
41 35 0.30
42 12 0.10
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (40 bp):
TATATATATTTTCAAAATGTTTTAAAAAAAATATATAATA
Found at i:6961484 original size:40 final size:37
Alignment explanation
Indices: 6961404--6961476 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
6961394 ATTTTAATGC
* * * *
6961404 TATTTAATGTTAGTTTTATTATTATAAGATTTCTGAA
1 TATTTAATATCAGTTTTATTATTATAAGATTTATAAA
6961441 TATTTAATATCAGTTTTATTATTATAAGATTTATAA
1 TATTTAATATCAGTTTTATTATTATAAGATTTATAA
6961477 CAAATATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (37 bp):
TATTTAATATCAGTTTTATTATTATAAGATTTATAAA
Found at i:6962208 original size:197 final size:197
Alignment explanation
Indices: 6961674--6962210 Score: 627
Period size: 197 Copynumber: 2.7 Consensus size: 197
6961664 CAATTACTTG
* * * * * *
6961674 TAACTAATTGTAACAAATTTATTTAAGCATAATAATATATTAAATTTAGTCAAAATAAGAAATTA
1 TAACAAATTGTAACAAATTTATTTAATCACAATAACATATTAAATTTAGTCAAAATAAAAAATAA
* * * * ** * *
6961739 TCTCAAATTTATTTAGTCACAAAATTGTATCAAAATAATAAATGATGA-AAAAATATTTAGTCAA
66 TGTCAAAATTATTTAGTCACAATATTTTATCAAAATAA-AAATTTTGACAAAATTATTTAGTCAT
* * * * *
6961803 AATAACAATTAATAATAAATATTAATTTTTCAATATAAAAAATTATGACAAATAATATGTTTTCA
130 AATAACAATTTATAATAAATAATAATTTCTCAATATAAAAAACTAGGACAAATAATATGTTTTCA
6961868 CAA
195 CAA
* * * * *
6961871 TAATAAATTGTAACAAATTTATTCAGTCACATTACCATATTAAATTTAGTCAAAATAAAAAA-AT
1 TAACAAATTGTAACAAATTTATTTAATCACAATAACATATTAAATTTAGTCAAAATAAAAAATA-
* * * * *
6961935 ATGT--AAATTATTTCGTCACAATATTTTCTCAAAAGGAAAATTTTTGACAAATTTATTTAGTCA
65 ATGTCAAAATTATTTAGTCACAATATTTTATCAAAA-TAAAAATTTTGACAAAATTATTTAGTCA
* *
6961998 TAATAACAATTTATAATAAATAATAATTTCTCGATATAAAAGACTAGGACAAAT-ATAT-TCTTT
129 TAATAACAATTTATAATAAATAATAATTTCTCAATATAAAAAACTAGGACAAATAATATGT-TTT
*
6962061 CATAA
193 CACAA
* * * *
6962066 TAACAAATTTTAACAAATTTATTTAATCACAGTAACATATTAAAATTAGTCAAAGTAAAAAATAA
1 TAACAAATTGTAACAAATTTATTTAATCACAATAACATATTAAATTTAGTCAAAATAAAAAATAA
* *
6962131 TGTCAAAATTATTTTGTCACAATATTTTATCAAAATAAAAACTTTTGACAAAATTATTTAATCAT
66 TGTCAAAATTATTTAGTCACAATATTTTATCAAAATAAAAA-TTTTGACAAAATTATTTAGTCAT
* *
6962196 AGTAAAAATTTATAA
130 AATAACAATTTATAA
6962211 CATGTAACCC
Statistics
Matches: 284, Mismatches: 48, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
194 1 0.00
195 100 0.35
196 66 0.23
197 117 0.41
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (197 bp):
TAACAAATTGTAACAAATTTATTTAATCACAATAACATATTAAATTTAGTCAAAATAAAAAATAA
TGTCAAAATTATTTAGTCACAATATTTTATCAAAATAAAAATTTTGACAAAATTATTTAGTCATA
ATAACAATTTATAATAAATAATAATTTCTCAATATAAAAAACTAGGACAAATAATATGTTTTCAC
AA
Found at i:6965025 original size:157 final size:157
Alignment explanation
Indices: 6964671--6965512 Score: 922
Period size: 157 Copynumber: 5.3 Consensus size: 157
6964661 TCTTGTAGTG
* * * * **
6964671 ATCCTTTATTTTAAGTCTGCTTTTTTTTATCAGATTTGAATCACATCCTCCTAAACCATTGTAGA
1 ATCCTTTATTTTAAGTCTG----TTTTTACCAAATTTGAACCACATGCTCCTAAACCATCATAGA
* * * * * *
6964736 ATACATATCTACTTTCAATTCCTATTTTTTTATAATAAATTTTATATTTTTCAATTTGGTCCCTC
62 ATACATATGTACTTTCAATTCCT-CTTTTTGATAAAAAATTTTCTATTTTTCAATTTAGTCCCTC
* *
6964801 ATTTTTTTATACTTTCCTTATTTCTTCAATTC
126 AATTTTTTATAATTTCCTTATTTCTTCAATTC
* *
6964833 ATCCTTTATTTTAAGTTCT-TTTTTACCAAATTTGAACCACATACTCTTAAACCATCATAGAATA
1 ATCCTTTATTTTAAG-TCTGTTTTTACCAAATTTGAACCACATGCTCCTAAACCATCATAGAATA
** * *
6964897 CATATGTACTTTCAATTGATCTTTTTGATAAAAAAATTTCTATGTTTCAATTTAG-CCCATCAAT
65 CATATGTACTTTCAATTCCTCTTTTTGATAAAAAATTTTCTATTTTTCAATTTAGTCCC-TCAAT
* *
6964961 TTTTTATAATTTCCTTATTTCTTGATTTC
129 TTTTTATAATTTCCTTATTTCTTCAATTC
* * * *
6964990 ACCCTTTATTTTAACTCTGTTTTTACCAAATTTGAATCACATGCTCCTAAATCAT-ATTAGAATA
1 ATCCTTTATTTTAAGTCTGTTTTTACCAAATTTGAACCACATGCTCCTAAACCATCA-TAGAATA
* * * * *
6965054 CATATGCACTTTTAATTCCTCTTTTCGATAAAATTTTTCTATTTTTCTATTTTTCAATTTATTCC
65 CATATGTACTTTCAATTCCTCTTTTTGATAAAA-------AATTTTCTATTTTTCAATTTAGTCC
* * *
6965119 TTCAATTTTTTTATAATTTTCTTATTTCTCCAATTC
123 CTCAA-TTTTTTATAATTTCCTTATTTCTTCAATTC
* * * * * * *
6965155 ACCCTTTATTTTAAATCTTTTTTTTATCGAATTTGAGCCACATGCTCCTAAACCATCATATAATA
1 ATCCTTTATTTTAAGTC-TGTTTTTACCAAATTTGAACCACATGCTCCTAAACCATCATAGAATA
* * * * * *
6965220 CATTTGTACTTTCAATTTCTCTTTTTGATAACAAATTTTCTATATTTGAATTTAGTCCCTCAATC
65 CATATGTACTTTCAATTCCTCTTTTTGATAAAAAATTTTCTATTTTTCAATTTAGTCCCTCAATT
*
6965285 TTTTATAATTTCCTTATTTATTCAATTC
130 TTTTATAATTTCCTTATTTCTTCAATTC
* * * * * *
6965313 ATCCTTTATTTTAAGTCTATTTTTACCAATTTTGAA-CACATGCTCCTAGATCATCGTAGAATAT
1 ATCCTTTATTTTAAGTCTGTTTTTACCAAATTTGAACCACATGCTCCTAAACCATCATAGAATAC
* * * *
6965377 ATATGTAGTTTCAATTCCTCTTTCTGAT-AAAAATTTTCTATTTTTGAATTTAGTCTCTCAATTT
66 ATATGTACTTTCAATTCCTCTTTTTGATAAAAAATTTTCTATTTTTCAATTTAGTCCCTCAATTT
* * * *
6965441 TTCATAATTTTCTTATTTCATCAGTTC
131 TTTATAATTTCCTTATTTCTTCAATTC
*
6965468 ATCC-TTATTTTAAGTCTGTTTTTACCAAATTTGAACTACATGCTC
1 ATCCTTTATTTTAAGTCTGTTTTTACCAAATTTGAACCACATGCTC
6965513 ATATACCACA
Statistics
Matches: 572, Mismatches: 92, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
154 29 0.05
155 66 0.12
156 54 0.09
157 152 0.27
158 96 0.17
159 25 0.04
162 15 0.03
163 3 0.01
164 22 0.04
165 44 0.08
166 65 0.11
167 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.06, T:0.49
Consensus pattern (157 bp):
ATCCTTTATTTTAAGTCTGTTTTTACCAAATTTGAACCACATGCTCCTAAACCATCATAGAATAC
ATATGTACTTTCAATTCCTCTTTTTGATAAAAAATTTTCTATTTTTCAATTTAGTCCCTCAATTT
TTTATAATTTCCTTATTTCTTCAATTC
Found at i:6965245 original size:323 final size:320
Alignment explanation
Indices: 6964775--6965421 Score: 884
Period size: 323 Copynumber: 2.0 Consensus size: 320
6964765 TTATAATAAA
* * * *
6964775 TTTTATATTTTTCAATTTGGTCCCTCATTTTTTTATACTTTCCTTATTTCTTCAATTCATCCTTT
1 TTTTATATTTTTCAATTTAGTCCCTCATTTTTTTATAATTTCCTTATTTCTCCAATTCACCCTTT
* *
6964840 ATTTTAAGTTCTTTTTTACCAAATTTGAACCACATACTCTTAAACCATCATAGAATACATATGTA
66 ATTTTAAATTCTTTTTTACCAAATTTGAACCACATACTCCTAAACCATCATAGAATACATATGTA
* *
6964905 CTTTCAATTGATCTTTTTGATAAAAAAATTTCTATGTTTCAATTTAG-CCCATCAATTTTTTATA
131 CTTTCAATTGATCTTTTTGATAAAAAAATTTCTATATTTCAATTTAGTCCC-TCAATCTTTTATA
* * * *
6964969 ATTTCCTTATTTCTTGATTTCACCCTTTATTTTAACTCTGTTTTTACCAAATTTGAATCACATGC
195 ATTTCCTTATTTATTCAATTCACCCTTTATTTTAACTCTATTTTTACCAAATTTGAA-CACATGC
* * *
6965034 TCCTAAATCATATTAGAATACATATGCACTTTTAATTCCTCTTT-TCGATAAAATTTTTCTAT
259 TCCTAAATCATAGTAGAATACATATGCACTTTCAATTCCTCTTTCT-GATAAAAATTTTCTAT
* * * *
6965096 TTTTCTATTTTTCAATTTATTCCTTCAATTTTTTTATAATTTTCTTATTTCTCCAATTCACCCTT
1 TTTTATATTTTTCAATTTAGTCCCTC-ATTTTTTTATAATTTCCTTATTTCTCCAATTCACCCTT
* * * * * * *
6965161 TATTTTAAATCTTTTTTTTATCGAATTTGAGCCACATGCTCCTAAACCATCATATAATACATTTG
65 TATTTTAAAT-TCTTTTTTACCAAATTTGAACCACATACTCCTAAACCATCATAGAATACATATG
** * * *
6965226 TACTTTCAATTTCTCTTTTTGATAACAAATTTTCTATATTTGAATTTAGTCCCTCAATCTTTTAT
129 TACTTTCAATTGATCTTTTTGATAAAAAAATTTCTATATTTCAATTTAGTCCCTCAATCTTTTAT
* * *
6965291 AATTTCCTTATTTATTCAATTCATCCTTTATTTTAAGTCTATTTTTACCAATTTTGAACACATGC
194 AATTTCCTTATTTATTCAATTCACCCTTTATTTTAACTCTATTTTTACCAAATTTGAACACATGC
* * * * *
6965356 TCCTAGATCATCGTAGAATATATATGTAGTTTCAATTCCTCTTTCTGATAAAAATTTTCTAT
259 TCCTAAATCATAGTAGAATACATATGCACTTTCAATTCCTCTTTCTGATAAAAATTTTCTAT
6965418 TTTT
1 TTTT
6965422 GAATTTAGTC
Statistics
Matches: 283, Mismatches: 39, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
321 22 0.08
322 106 0.37
323 152 0.54
324 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.49
Consensus pattern (320 bp):
TTTTATATTTTTCAATTTAGTCCCTCATTTTTTTATAATTTCCTTATTTCTCCAATTCACCCTTT
ATTTTAAATTCTTTTTTACCAAATTTGAACCACATACTCCTAAACCATCATAGAATACATATGTA
CTTTCAATTGATCTTTTTGATAAAAAAATTTCTATATTTCAATTTAGTCCCTCAATCTTTTATAA
TTTCCTTATTTATTCAATTCACCCTTTATTTTAACTCTATTTTTACCAAATTTGAACACATGCTC
CTAAATCATAGTAGAATACATATGCACTTTCAATTCCTCTTTCTGATAAAAATTTTCTAT
Found at i:6978453 original size:15 final size:16
Alignment explanation
Indices: 6978433--6978462 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6978423 TATTTTAAAT
6978433 ATTTTA-AAAAAATAA
1 ATTTTATAAAAAATAA
6978448 ATTTTATAAAAAATA
1 ATTTTATAAAAAATA
6978463 TACATTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTTTATAAAAAATAA
Found at i:6978457 original size:17 final size:17
Alignment explanation
Indices: 6978428--6978460 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6978418 ATAATTATTT
6978428 TAAATATTTTAAAAAAA
1 TAAATATTTTAAAAAAA
6978445 TAAAT-TTTATAAAAAA
1 TAAATATTT-TAAAAAA
6978461 TATACATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAATATTTTAAAAAAA
Found at i:6980456 original size:14 final size:15
Alignment explanation
Indices: 6980417--6980457 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
6980407 TTACGAATAT
6980417 GACTAAAATATAAAC
1 GACTAAAATATAAAC
* *
6980432 TACTAAAATATAAAG
1 GACTAAAATATAAAC
6980447 GACT-AAATATA
1 GACTAAAATATA
6980458 TGATTTTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.59, C:0.10, G:0.07, T:0.24
Consensus pattern (15 bp):
GACTAAAATATAAAC
Found at i:6987731 original size:13 final size:13
Alignment explanation
Indices: 6987715--6987740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6987705 AATGGACAAG
6987715 CCGAAGTGTCTAA
1 CCGAAGTGTCTAA
6987728 CCGAAGTGTCTAA
1 CCGAAGTGTCTAA
6987741 TCAAAGCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCGAAGTGTCTAA
Found at i:6993583 original size:17 final size:17
Alignment explanation
Indices: 6993557--6993615 Score: 109
Period size: 17 Copynumber: 3.5 Consensus size: 17
6993547 ATGGACCTAG
*
6993557 CCCGAGTTGGGTTGTAA
1 CCCGACTTGGGTTGTAA
6993574 CCCGACTTGGGTTGTAA
1 CCCGACTTGGGTTGTAA
6993591 CCCGACTTGGGTTGTAA
1 CCCGACTTGGGTTGTAA
6993608 CCCGACTT
1 CCCGACTT
6993616 TCCTCTTTGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.17, C:0.25, G:0.29, T:0.29
Consensus pattern (17 bp):
CCCGACTTGGGTTGTAA
Found at i:6993678 original size:12 final size:11
Alignment explanation
Indices: 6993658--6993701 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
6993648 ATAAATAATA
6993658 TAATAATATAT
1 TAATAATATAT
6993669 TAATACATATA-
1 TAATA-ATATAT
6993680 TAATAATATAT
1 TAATAATATAT
*
6993691 ATATTAATATA
1 -TAATAATATA
6993702 ACACTCGGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 5 0.17
11 10 0.34
12 14 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAATAATATAT
Found at i:6994002 original size:2 final size:2
Alignment explanation
Indices: 6993995--6994025 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6993985 GTAATTTAAA
*
6993995 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6994026 AATAAAGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6994026 original size:12 final size:12
Alignment explanation
Indices: 6993995--6994029 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
6993985 GTAATTTAAA
*
6993995 ATATATATATAT
1 ATATATAAATAT
6994007 ATATATAAATAT
1 ATATATAAATAT
6994019 ATATATAAATA
1 ATATATAAATA
6994030 AAGATGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:7000051 original size:16 final size:18
Alignment explanation
Indices: 7000017--7000054 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
7000007 GGTTTTAATA
*
7000017 TTTTTTTGAAACATACAG
1 TTTTTTTGAAAAATACAG
7000035 TTTTTTT-AAAAAT-CAG
1 TTTTTTTGAAAAATACAG
7000051 TTTT
1 TTTT
7000055 GAAAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 5 0.26
18 7 0.37
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.53
Consensus pattern (18 bp):
TTTTTTTGAAAAATACAG
Found at i:7000098 original size:24 final size:23
Alignment explanation
Indices: 7000066--7000111 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
7000056 AAAATATATA
*
7000066 TATAATATATAGTTTTTGAAAATT
1 TATAATATATAG-TGTTGAAAATT
*
7000090 TATACTATATAGTGTTGAAAAT
1 TATAATATATAGTGTTGAAAAT
7000112 ATCTTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (23 bp):
TATAATATATAGTGTTGAAAATT
Found at i:7000119 original size:35 final size:36
Alignment explanation
Indices: 7000080--7000164 Score: 118
Period size: 35 Copynumber: 2.4 Consensus size: 36
7000070 ATATATAGTT
* *
7000080 TTTGAAAATTTATACTATATAGTGTTGAAAAT-ATC
1 TTTGAAAATATATACTATATAGTGTTAAAAATAATC
* * *
7000115 TTTGAAAATATATATTATATAGTTTTAAAAATAATT
1 TTTGAAAATATATACTATATAGTGTTAAAAATAATC
7000151 TTTGAAAATATATA
1 TTTGAAAATATATA
7000165 TTATGTGGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 28 0.64
36 16 0.36
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (36 bp):
TTTGAAAATATATACTATATAGTGTTAAAAATAATC
Found at i:7000162 original size:36 final size:35
Alignment explanation
Indices: 7000078--7000217 Score: 136
Period size: 36 Copynumber: 3.9 Consensus size: 35
7000068 TAATATATAG
* * *
7000078 TTTTTGAAAATTTATACTATATAGTGTTGAAAATA
1 TTTTTGAAAATATATACTATATAGTTTTAAAAATA
* *
7000113 TCTTTGAAAATATATATTATATAGTTTTAAAAATAA
1 TTTTTGAAAATATATACTATATAGTTTTAAAAAT-A
* * * **
7000149 TTTTTGAAAATATATATTATGTGGTTTTGAAAACCA
1 TTTTTGAAAATATATACTATATAGTTTT-AAAAATA
* *
7000185 TTTTTAAAAGCATATATACTATATAATTTTAAA
1 TTTTTGAAA--ATATATACTATATAGTTTTAAA
7000218 GAGAAAATCG
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
35 29 0.34
36 35 0.41
37 7 0.08
38 15 0.17
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (35 bp):
TTTTTGAAAATATATACTATATAGTTTTAAAAATA
Found at i:7000385 original size:21 final size:20
Alignment explanation
Indices: 7000299--7000456 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
7000289 AAATGACCAA
**
7000299 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
7000318 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
7000338 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
7000358 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
7000379 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
7000400 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
7000420 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
7000441 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
7000457 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:7000472 original size:40 final size:40
Alignment explanation
Indices: 7000423--7000577 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
7000413 CGATTTTCCA
* ** *
7000423 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACAT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
* * *
7000463 AAATCGCAACGCGTATCCGTAAATCGCAACGTGTATC-CGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCG-AACACAT
* ** *
7000503 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACAT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
7000543 AAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
7000578 TATTTAAAGC
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 62 0.65
41 33 0.34
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.18
Consensus pattern (40 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
Found at i:7000485 original size:20 final size:20
Alignment explanation
Indices: 7000423--7000576 Score: 168
Period size: 20 Copynumber: 7.7 Consensus size: 20
7000413 CGATTTTCCA
* ** *
7000423 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
7000443 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
7000463 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
7000483 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
7000503 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
7000523 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
7000543 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
7000564 AAATCGCAACGCG
1 AAATCGCAACGCG
7000577 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.02
20 92 0.82
21 17 0.15
22 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:7000998 original size:33 final size:33
Alignment explanation
Indices: 7000959--7001029 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
7000949 TTCACTTAGA
*
7000959 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
7000992 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
7001025 TTTCA
1 TTTCA
7001030 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:7001166 original size:19 final size:19
Alignment explanation
Indices: 7001121--7001195 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
7001111 GCAACGAGAT
* *
7001121 AAATGAAAATCGCAACGAG
1 AAATGACAATCGCAACGCG
**
7001140 AGAATGACTGTCGCAACGCG
1 A-AATGACAATCGCAACGCG
7001160 AAATGACAATCGCAACGCG
1 AAATGACAATCGCAACGCG
*
7001179 AAATGAAAATCGCAACG
1 AAATGACAATCGCAACG
7001196 AGAGAATCGC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 33 0.69
20 15 0.31
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (19 bp):
AAATGACAATCGCAACGCG
Found at i:7001243 original size:19 final size:19
Alignment explanation
Indices: 7001221--7001318 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
7001211 GAAACCAAAA
*
7001221 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7001240 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7001254 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7001273 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
7001287 TCTCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
7001306 TCGCGTTGCGATT
1 TCGCGTTGCGATT
7001319 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7001262 original size:14 final size:14
Alignment explanation
Indices: 7001243--7001332 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
7001233 TTTCATTTCG
7001243 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7001257 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7001276 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7001290 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
7001309 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7001323 CGTTGCGATT
1 CGTTGCGATT
7001333 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 1 0.02
16 5 0.08
17 5 0.08
18 1 0.02
19 20 0.32
ACGTcount: A:0.09, C:0.24, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7001268 original size:33 final size:33
Alignment explanation
Indices: 7001226--7001340 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
7001216 CAAAATCGCA
7001226 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
7001259 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
7001292 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
7001325 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
7001341 AACCAAAAGA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:7003237 original size:93 final size:93
Alignment explanation
Indices: 7003039--7003288 Score: 484
Period size: 93 Copynumber: 2.7 Consensus size: 93
7003029 TAGATTGCTT
*
7003039 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTG-AATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7003103 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7003131 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7003196 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7003224 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7003289 CCTAGAATTC
Statistics
Matches: 156, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
92 56 0.36
93 100 0.64
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:7003548 original size:14 final size:14
Alignment explanation
Indices: 7003529--7003564 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7003519 ATTGTTTAAT
7003529 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
7003543 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
7003557 TGATTTGT
1 TGATTTGT
7003565 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7003695 original size:19 final size:19
Alignment explanation
Indices: 7003671--7003820 Score: 203
Period size: 19 Copynumber: 8.4 Consensus size: 19
7003661 AAAATTGACT
7003671 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7003690 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7003709 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
7003723 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7003742 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7003761 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
7003775 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7003794 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
7003814 ATCGCAA
1 ATCGCAA
7003821 CGGGAGAATC
Statistics
Matches: 116, Mismatches: 4, Indels: 21
0.82 0.03 0.15
Matches are distributed among these distances:
14 20 0.17
15 2 0.02
16 4 0.03
17 4 0.03
18 2 0.02
19 68 0.59
20 16 0.14
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7003731 original size:33 final size:33
Alignment explanation
Indices: 7003689--7003839 Score: 137
Period size: 33 Copynumber: 4.4 Consensus size: 33
7003679 GCGAAATGAA
7003689 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* *
7003722 AATCGCAATGCGAAATGAAAATCGCAATGCGA-
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* * * *
7003754 AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCG-CAATGCGAAATGA-A-AATCGCAA--CG--A-GAG
*
7003793 AATCGCAATGCGGAAATGAAAATCGCAACGGGAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGAGAG
7003827 AATCGCAATGCGA
1 AATCGCAATGCGA
7003840 TTTTAATTTC
Statistics
Matches: 94, Mismatches: 12, Indels: 24
0.72 0.09 0.18
Matches are distributed among these distances:
31 7 0.07
32 7 0.07
33 40 0.43
34 13 0.14
35 1 0.01
37 2 0.02
38 2 0.02
39 14 0.15
40 3 0.03
41 5 0.05
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:7003749 original size:52 final size:52
Alignment explanation
Indices: 7003671--7003839 Score: 320
Period size: 52 Copynumber: 3.2 Consensus size: 52
7003661 AAAATTGACT
7003671 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
7003723 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
7003775 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGGGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
7003828 ATCGCAATGCGA
1 ATCGCAATGCGA
7003840 TTTTAATTTC
Statistics
Matches: 115, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
52 81 0.70
53 34 0.30
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:7003857 original size:19 final size:19
Alignment explanation
Indices: 7003829--7004017 Score: 210
Period size: 19 Copynumber: 10.7 Consensus size: 19
7003819 AACGGGAGAA
* *
7003829 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
7003848 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
*
7003864 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
7003881 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7003900 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
7003916 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7003933 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7003952 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7003971 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
7003989 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
7004005 TCGCATTGCGATT
1 TCGCATTGCGATT
7004018 CTCTCGTTGC
Statistics
Matches: 144, Mismatches: 10, Indels: 32
0.77 0.05 0.17
Matches are distributed among these distances:
14 22 0.15
16 16 0.11
17 14 0.10
18 1 0.01
19 75 0.52
20 16 0.11
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7003892 original size:52 final size:52
Alignment explanation
Indices: 7003829--7004031 Score: 272
Period size: 52 Copynumber: 3.9 Consensus size: 52
7003819 AACGGGAGAA
* * *
7003829 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGTGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
7003881 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
*
7003933 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCA--
1 TCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG--TTGCGATTTTCATT
*
7003989 T-G--TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATT
7004032 GTAATTTCCG
Statistics
Matches: 139, Mismatches: 6, Indels: 17
0.86 0.04 0.10
Matches are distributed among these distances:
47 8 0.06
49 2 0.01
50 2 0.01
51 3 0.02
52 79 0.57
53 24 0.17
54 3 0.02
55 3 0.02
56 3 0.02
58 12 0.09
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (52 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:7004039 original size:33 final size:33
Alignment explanation
Indices: 7003886--7004031 Score: 195
Period size: 33 Copynumber: 4.2 Consensus size: 33
7003876 TCATTTCGCA
7003886 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
7003919 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
*
7003955 CATTGCGATTTTCATTTCCGCATTGCGATTTTCAT-G
1 --TTGCGATTTTCATTT-CGCATTGCGATTCTC-TCG
*
7003991 TTGGGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
7004024 TTGCGATT
1 TTGCGATT
7004032 GTAATTTCCG
Statistics
Matches: 99, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
32 1 0.01
33 47 0.47
34 14 0.14
35 3 0.03
36 6 0.06
37 3 0.03
38 15 0.15
39 10 0.10
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:7006495 original size:24 final size:24
Alignment explanation
Indices: 7006461--7006507 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7006451 CTGAAACATC
7006461 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
7006485 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
7006508 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:7007217 original size:20 final size:20
Alignment explanation
Indices: 7007189--7007478 Score: 321
Period size: 20 Copynumber: 14.5 Consensus size: 20
7007179 AAATTTCAGT
* *
7007189 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
7007209 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
7007229 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
7007249 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
7007269 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
7007289 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
7007309 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
7007329 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
7007349 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
7007369 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
7007389 GTTGCGATATACGGATACAC
1 GTTGCGATTTACGGATTCTC
* *
7007409 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* *
7007429 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
* ** *
7007449 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCTC
7007469 GTTGCGATTT
1 GTTGCGATTT
7007479 TGGAAAATCG
Statistics
Matches: 240, Mismatches: 28, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
20 239 1.00
21 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:7007495 original size:21 final size:21
Alignment explanation
Indices: 7007465--7007547 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
7007455 ATTTTCATAT
*
7007465 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
7007486 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
7007507 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
7007528 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
7007548 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:7007538 original size:42 final size:43
Alignment explanation
Indices: 7007445--7007543 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
7007435 ATTTATGTGT
* *
7007445 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
7007486 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
7007528 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
7007544 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:7007702 original size:3 final size:3
Alignment explanation
Indices: 7007696--7007776 Score: 81
Period size: 3 Copynumber: 25.7 Consensus size: 3
7007686 AATGATTTTT
* * * * *
7007696 TTA TTA TATA TTA ATA TTCT TTA TTT TTA TTCT TTA TTA TTA TTA TTT
1 TTA TTA T-TA TTA TTA TT-A TTA TTA TTA TT-A TTA TTA TTA TTA TTA
7007744 TTA CTTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7007777 TATTTTCCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
3 54 0.84
4 10 0.16
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7007720 original size:13 final size:13
Alignment explanation
Indices: 7007704--7007776 Score: 71
Period size: 13 Copynumber: 5.8 Consensus size: 13
7007694 TTTTATTATA
*
7007704 TATTAATATTCTT
1 TATTATTATTCTT
*
7007717 TATTTTTATTCTT
1 TATTATTATTCTT
*
7007730 TATTATTATTATT
1 TATTATTATTCTT
*
7007743 T-TTACTTATT-AT
1 TATTA-TTATTCTT
*
7007755 TATTATTATT-AT
1 TATTATTATTCTT
7007767 TATTATTATT
1 TATTATTATT
7007777 TATTTTCCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
12 22 0.42
13 31 0.58
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTATTATTCTT
Found at i:7007744 original size:22 final size:22
Alignment explanation
Indices: 7007716--7007780 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 22
7007706 TTAATATTCT
*
7007716 TTATTTTTATTCTTTATTATTA
1 TTATTTTTATTATTTATTATTA
7007738 TTATTTTTACTTATTATTATTATTA
1 TTATTTTTA-TTA-T-TTATTATTA
*
7007763 TTATTATTATTATTTATT
1 TTATTTTTATTATTTATT
7007781 TTCCAAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
24 4 0.11
25 17 0.45
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (22 bp):
TTATTTTTATTATTTATTATTA
Found at i:7008224 original size:14 final size:14
Alignment explanation
Indices: 7008202--7008241 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
7008192 TAGGGCAAAC
*
7008202 CCAAACAACAAATA
1 CCAACCAACAAATA
7008216 CCAACCAACAAATA
1 CCAACCAACAAATA
*
7008230 CCAACAAACAAA
1 CCAACCAACAAA
7008242 ATAACCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.62, C:0.33, G:0.00, T:0.05
Consensus pattern (14 bp):
CCAACCAACAAATA
Found at i:7008934 original size:85 final size:84
Alignment explanation
Indices: 7008814--7009214 Score: 570
Period size: 85 Copynumber: 4.8 Consensus size: 84
7008804 TTGTTCGCAA
* *
7008814 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGCCTTTGAGTTCGATTACATTCAGCTAA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAA-CCTTCGAGTTCGATTACATTCAGCTCA
* *
7008879 AGGGCATACCAAATTTATAG
65 AGGGCATATCAAATTTACAG
**
7008899 CATAGCTCAAGGTAAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAA
* *
7008964 GGGCACATCAAATTTATAG
66 GGGCATATCAAATTTACAG
* *
7008983 CATAACTCAAGGCGAGAAGGGCTATCTGTTAAC-AAACCTTCGAGTTCGATTACATTCAGCTCAA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAA
*
7009047 GGGCATATCAAATATACAG
66 GGGCATATCAAATTTACAG
* * * * **
7009066 CATAGCTCAAGGAGATAAGGGCTATTTGTCAATAAAAATGTTCGAGTTCGATTACATTCAGCTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-CAAAACCTTCGAGTTCGATTACATTCAGCTCA
* *
7009131 AGGGCATATCAAACTTACAA
65 AGGGCATATCAAATTTACAG
* * *
7009151 CATAGCTCAAGGCGAGAATGACTATCTGTCAACAAAGACCTTCGAGTTCGATTCCATTCAGCTC
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA-ACCTTCGAGTTCGATTACATTCAGCTC
7009215 GGTGATAGCA
Statistics
Matches: 280, Mismatches: 33, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
83 74 0.26
84 75 0.27
85 131 0.47
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (84 bp):
CATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAA
GGGCATATCAAATTTACAG
Found at i:7009179 original size:168 final size:168
Alignment explanation
Indices: 7008811--7009214 Score: 587
Period size: 168 Copynumber: 2.4 Consensus size: 168
7008801 AAATTGTTCG
*
7008811 CAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGCCTTTGAGTTCGATTACATTCAGC
1 CAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAA-CCTTCGAGTTCGATTACATTCAGC
* * * *
7008876 TAAAGGGCATACCAAATTTATAGCATAGCTCAAGGTAAGAAGGGCTATCTGTCAACAAAACCTTC
65 TCAAGGGCATACCAAATATACAGCATAGCTCAAGGTAAGAAGGGCTATCTGTCAAAAAAACCTTC
*
7008941 GAGTTCGATTACATTCAGCTCAAGGGCACATCAAATTTA
130 GAGTTCGATTACATTCAGCTCAAGGGCACATCAAACTTA
* * * *
7008980 TAGCATAACTCAAGGCGAGAAGGGCTATCTGTTAAC-AAACCTTCGAGTTCGATTACATTCAGCT
1 CAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCT
* * * **
7009044 CAAGGGCATATCAAATATACAGCATAGCTCAAGG-AGATAAGGGCTATTTGTCAATAAAAATGTT
66 CAAGGGCATACCAAATATACAGCATAGCTCAAGGTA-AGAAGGGCTATCTGTCAA-AAAAACCTT
*
7009108 CGAGTTCGATTACATTCAGCTCAAGGGCATATCAAACTTA
129 CGAGTTCGATTACATTCAGCTCAAGGGCACATCAAACTTA
* * *
7009148 CAACATAGCTCAAGGCGAGAATGACTATCTGTCAACAAAGACCTTCGAGTTCGATTCCATTCAGC
1 CAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA-ACCTTCGAGTTCGATTACATTCAGC
7009213 TC
65 TC
7009215 GGTGATAGCA
Statistics
Matches: 208, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
166 1 0.00
167 70 0.34
168 77 0.37
169 34 0.16
170 26 0.12
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (168 bp):
CAACATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCT
CAAGGGCATACCAAATATACAGCATAGCTCAAGGTAAGAAGGGCTATCTGTCAAAAAAACCTTCG
AGTTCGATTACATTCAGCTCAAGGGCACATCAAACTTA
Found at i:7009804 original size:25 final size:27
Alignment explanation
Indices: 7009758--7009807 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
7009748 TTGTCCGGAG
* *
7009758 TTTTTTTTAATATAGTATAGTTTTTGA
1 TTTTTTTGAATATAGTACAGTTTTTGA
7009785 TTTTTTTGAA-ATA-TACAGTTTTT
1 TTTTTTTGAATATAGTACAGTTTTT
7009808 TAAAAATCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 3 0.14
27 9 0.43
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (27 bp):
TTTTTTTGAATATAGTACAGTTTTTGA
Found at i:7009858 original size:24 final size:23
Alignment explanation
Indices: 7009831--7009878 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
7009821 TTGAAAATGT
*
7009831 ATATATAATATATAGTTTTTGAAA
1 ATATATAATATAT-GGTTTTGAAA
* *
7009855 ATATATATTATGTGGTTTTGAAA
1 ATATATAATATATGGTTTTGAAA
7009878 A
1 A
7009879 CCATTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (23 bp):
ATATATAATATATGGTTTTGAAA
Found at i:7009943 original size:3 final size:3
Alignment explanation
Indices: 7009923--7009999 Score: 70
Period size: 3 Copynumber: 25.7 Consensus size: 3
7009913 AAAATGATTT
* **
7009923 TTA TTA TATA TTA ATA TTA TT- TCC TT- TTA TTCA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
*
7009968 TTTA TTA TTA TTA TTA TTA TTA CTA TT- TTA TT
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7010000 TTCCAAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
2 5 0.08
3 48 0.77
4 9 0.15
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7009974 original size:16 final size:16
Alignment explanation
Indices: 7009949--7010000 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
7009939 TTATTTCCTT
*
7009949 TTATTCATTATTATTA
1 TTATTTATTATTATTA
7009965 TTATTTATTATTATTA
1 TTATTTATTATTATTA
*
7009981 TTA-TTATTACTATT-
1 TTATTTATTATTATTA
7009995 TTATTT
1 TTATTT
7010001 TCCAAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 3 0.09
15 12 0.36
16 18 0.55
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTTATTATTATTA
Found at i:7011158 original size:85 final size:85
Alignment explanation
Indices: 7010835--7011236 Score: 488
Period size: 85 Copynumber: 4.8 Consensus size: 85
7010825 TTGTTCACAA
* * * * *
7010835 CATAGCTCAAGGCGAGAATGGTTATCTTTCAATAAAAGCCTTCGAGTTCGATTACATTCAGCTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAAACCTTCGAGTTCAATTACATTCAGCTCA
* *
7010900 AGGGCATACCAAATTTATAG
66 AGGGCATATCAAATTTACAG
* * *
7010920 CATAGCTCAAGGCGAGAAGGGATATCTGTCAA-CAAAACCTTCAAGTTCAATTACATTCAGCTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAAACCTTCGAGTTCAATTACATTCAGCTCA
*
7010984 AGGGCACATCAAATTTACAG
66 AGGGCATATCAAATTTACAG
* * * * * * *
7011004 CATAACTTAAAGCGAGAAGGGCTATC--T-ATTAACAAACCTTTGAGTTCGATTACATTCACCTC
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAA-AAACCTTCGAGTTCAATTACATTCAGCTC
7011066 AAGGGCATATCAAATTTACAG
65 AAGGGCATATCAAATTTACAG
* * * * * *
7011087 CATAGCTCAAGGCAAGAAAGGCTATTTGTCAATAAAAACCTTCGAGTTCAATTATATCCAGTTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAAACCTTCGAGTTCAATTACATTCAGCTCA
*
7011152 AGGGCATATCAAACTTACAG
66 AGGGCATATCAAATTTACAG
* * * ** *
7011172 CATAGCTTAAGGCGAGAAGGGCTATCTGTCAACAAAGACCTTCGAGTTTGATTTCATTCAGCTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAAACCTTCGAGTTCAATTACATTCAGCTCA
7011237 GTGACAGCAA
Statistics
Matches: 265, Mismatches: 47, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
81 1 0.00
82 2 0.01
83 65 0.25
84 67 0.25
85 126 0.48
86 4 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (85 bp):
CATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAAACCTTCGAGTTCAATTACATTCAGCTCA
AGGGCATATCAAATTTACAG
Found at i:7011196 original size:168 final size:166
Alignment explanation
Indices: 7010835--7011236 Score: 516
Period size: 168 Copynumber: 2.4 Consensus size: 166
7010825 TTGTTCACAA
* * * *
7010835 CATAGCTCAAGGCGAGAATGGTTATCTTTCAATAAAAGCCTTCGAGTTCGATTACATTCAGCTCA
1 CATAGCTTAAGGCGAGAAGGGCTATCTTT-AA-CAAA-CCTTCGAGTTCGATTACATTCAGCTCA
* * * *
7010900 AGGGCATACCAAATTTATAGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAACCTTCAAG
63 AGGGCATACCAAATTTACAGCATAGCTCAAGGCAAGAAAGGATATCTGTCAAAAAAACCTTCAAG
* *
7010965 TTCAATTACATTCAGCTCAAGGGCACATCAAATTTACAG
128 TTCAATTACATCCAGCTCAAGGGCACATCAAACTTACAG
* * * *
7011004 CATAACTTAAAGCGAGAAGGGCTATCTATTAACAAACCTTTGAGTTCGATTACATTCACCTCAAG
1 CATAGCTTAAGGCGAGAAGGGCTATCT-TTAACAAACCTTCGAGTTCGATTACATTCAGCTCAAG
* * * *
7011069 GGCATATCAAATTTACAGCATAGCTCAAGGCAAGAAAGGCTATTTGTCAATAAAAACCTTCGAGT
65 GGCATACCAAATTTACAGCATAGCTCAAGGCAAGAAAGGATATCTGTCAA-AAAAACCTTCAAGT
* * *
7011134 TCAATTATATCCAGTTCAAGGGCATATCAAACTTACAG
129 TCAATTACATCCAGCTCAAGGGCACATCAAACTTACAG
* * *
7011172 CATAGCTTAAGGCGAGAAGGGCTATCTGTCAACAAAGACCTTCGAGTTTGATTTCATTCAGCTCA
1 CATAGCTTAAGGCGAGAAGGGCTATCT-TTAAC-AA-ACCTTCGAGTTCGATTACATTCAGCTCA
7011237 GTGACAGCAA
Statistics
Matches: 200, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
167 71 0.35
168 77 0.38
169 26 0.13
170 26 0.13
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (166 bp):
CATAGCTTAAGGCGAGAAGGGCTATCTTTAACAAACCTTCGAGTTCGATTACATTCAGCTCAAGG
GCATACCAAATTTACAGCATAGCTCAAGGCAAGAAAGGATATCTGTCAAAAAAACCTTCAAGTTC
AATTACATCCAGCTCAAGGGCACATCAAACTTACAG
Found at i:7011827 original size:25 final size:27
Alignment explanation
Indices: 7011784--7011835 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
7011774 TCGTCCGGAG
*
7011784 TTTTTTTTAATATAGTATAGTTTTTTA
1 TTTTTTTTAATACAGTATAGTTTTTTA
7011811 TTTTTTTTAA-ACA-TATAGTTTTTTA
1 TTTTTTTTAATACAGTATAGTTTTTTA
7011836 AAAATCGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 12 0.50
26 2 0.08
27 10 0.42
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (27 bp):
TTTTTTTTAATACAGTATAGTTTTTTA
Found at i:7011887 original size:24 final size:24
Alignment explanation
Indices: 7011857--7011922 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
7011847 TTGAAAATGT
7011857 ATATATAATATATAGTTTTTGAAA
1 ATATATAATATATAGTTTTTGAAA
* *
7011881 ATGTATACTATATAG-TTTTGAAA
1 ATATATAATATATAGTTTTTGAAA
* *
7011904 ATATATATTATATTGTTTT
1 ATATATAATATATAGTTTT
7011923 AAAAACAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATATAATATATAGTTTTTGAAA
Done.