Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9952466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 43
Found at i:7011939 original size:36 final size:36
Alignment explanation
Indices: 7011896--7012001 Score: 131
Period size: 36 Copynumber: 2.9 Consensus size: 36
7011886 TACTATATAG
*
7011896 TTTTGAAAATATATATTATATTGTTTTAAAAACAAT
1 TTTTGAAAATATATATTATATAGTTTTAAAAACAAT
* * * *
7011932 TTTTGAAAATATATATTATGTGGTTTTGAAAACCAT
1 TTTTGAAAATATATATTATATAGTTTTAAAAACAAT
* *
7011968 TTTTAAAAGCATATATAATATATAGTTTTAAAAA
1 TTTTGAAA--ATATATATTATATAGTTTTAAAAA
7012002 TGATTTTTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 39 0.66
38 20 0.34
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.44
Consensus pattern (36 bp):
TTTTGAAAATATATATTATATAGTTTTAAAAACAAT
Found at i:7012028 original size:3 final size:3
Alignment explanation
Indices: 7012008--7012071 Score: 76
Period size: 3 Copynumber: 20.7 Consensus size: 3
7011998 AAAATGATTT
* *
7012008 TTA TTA TATA TTA ATA TTA TTTA TTT TTA TTCA TTA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA TTA
7012056 TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TT
7012072 TTCCAAAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
2 2 0.04
3 42 0.79
4 9 0.17
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7018674 original size:70 final size:69
Alignment explanation
Indices: 7018561--7018696 Score: 200
Period size: 70 Copynumber: 2.0 Consensus size: 69
7018551 CATTCAGCTC
* * *
7018561 AAGGGCATACCAAATTTATAGCAAAGCTCAAGGTGAGAAGGGCTATCTGTCAATAAAACCTTCGA
1 AAGGGCACACCAAATTTACAACAAAGCTCAAGGTGAGAAGGGCTATCTGTCAA-AAAACCTTCGA
7018626 GTCTT
65 GTCTT
* * * *
7018631 AAGGGCACATCAAATTTACAACATAGCTCAAGGTGAGAAGGGCTATCTGTTAACAAACCTTCGAG
1 AAGGGCACACCAAATTTACAACAAAGCTCAAGGTGAGAAGGGCTATCTGTCAAAAAACCTTCGAG
7018696 T
66 T
7018697 TCGATTATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
69 12 0.20
70 47 0.80
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (69 bp):
AAGGGCACACCAAATTTACAACAAAGCTCAAGGTGAGAAGGGCTATCTGTCAAAAAACCTTCGAG
TCTT
Found at i:7018808 original size:85 final size:85
Alignment explanation
Indices: 7018631--7018855 Score: 312
Period size: 85 Copynumber: 2.7 Consensus size: 85
7018621 TTCGAGTCTT
* * *
7018631 AAGGGCACATCAAATTTACAACATAGCTCAAGGTGAGAAGGGCTATCTGT---TAACAAACCTTC
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAA-AAACCTTC
* *
7018693 GAGTTCGATTATATTCAGTTC
65 GAGTTCAATTATATTCAGCTC
* * * * *
7018714 AAGGACATATCAAATTTACAGCATAGCTCAAGGAAAGAAAGGCTATTTGTCAATAAAAATCTTCG
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAAAACCTTCG
7018779 AGTTCAATTATATTCAGCTC
66 AGTTCAATTATATTCAGCTC
* *
7018799 AAGGGCATATCAAACTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAA
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAA
7018856 GTCCTTCATG
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
83 43 0.35
85 77 0.63
86 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (85 bp):
AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAAAACCTTCG
AGTTCAATTATATTCAGCTC
Found at i:7018879 original size:85 final size:84
Alignment explanation
Indices: 7018631--7018884 Score: 309
Period size: 85 Copynumber: 3.0 Consensus size: 84
7018621 TTCGAGTCTT
* * * * *
7018631 AAGGGCACATCAAATTTACAACATAGCTCAAGGTGAGAAGGGCTATCTGTTAACAAA-CCTTCGA
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAATCCTTCGA
*
7018695 GTTCGATTATATTCAGTTC
66 GTTCGATTATATTCAGCTC
* * * *
7018714 AAGGACATATCAAATTTACAGCATAGCTCAAGGAAAGAAAGGCTATTTGTCAATAAAAAT-CTTC
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAAT--AAATCCTTC
*
7018778 GAGTTCAATTATATTCAGCTC
64 GAGTTCGATTATATTCAGCTC
* *
7018799 AAGGGCATATCAAACTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGTCCTTC-
1 AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAA-TCCTTCG
*
7018863 ATGTTTGATT-TCATTCAGCTC
65 A-GTTCGATTAT-ATTCAGCTC
7018884 A
1 A
7018885 GTGACAGCAA
Statistics
Matches: 145, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
83 48 0.33
84 3 0.02
85 94 0.65
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (84 bp):
AAGGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTATCTGTCAATAAATCCTTCGA
GTTCGATTATATTCAGCTC
Found at i:7019486 original size:15 final size:16
Alignment explanation
Indices: 7019455--7019495 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
7019445 AGTTTTTGAT
*
7019455 TTTTTTAAACATACAG
1 TTTTTTAAAAATACAG
7019471 TTTTTTAAAAAT-CAG
1 TTTTTTAAAAATACAG
*
7019486 TTTTTGAAAA
1 TTTTTTAAAA
7019496 TGTATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (16 bp):
TTTTTTAAAAATACAG
Found at i:7019531 original size:12 final size:12
Alignment explanation
Indices: 7019514--7019538 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7019504 TAATATATTG
7019514 TTTTTGAAAATA
1 TTTTTGAAAATA
7019526 TTTTTGAAAATA
1 TTTTTGAAAATA
7019538 T
1 T
7019539 ATATTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TTTTTGAAAATA
Found at i:7019577 original size:38 final size:37
Alignment explanation
Indices: 7019473--7019632 Score: 137
Period size: 36 Copynumber: 4.2 Consensus size: 37
7019463 ACATACAGTT
* *
7019473 TTTTAAAAATCAGTTTTTGAAAATGTATATATAATATATTG
1 TTTTAAAAA-CAATTTTTG-AAA-G-ATATATAATATATAG
* * * *
7019514 TTTTTGAAAA-TATTTTTGAAA-ATATATATTATAAAG
1 -TTTTAAAAACAATTTTTGAAAGATATATAATATATAG
* * *
7019550 TTTTAAAAACAATTTTTGAAA-ATATATATTATGTGG
1 TTTTAAAAACAATTTTTGAAAGATATATAATATATAG
* * *
7019586 TTTTGAAAACCATTTTTAAAAGCATATATAATATATAG
1 TTTTAAAAACAATTTTTGAAAG-ATATATAATATATAG
7019624 TTTTAAAAA
1 TTTTAAAAA
7019633 TGATTTTTTA
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
35 8 0.08
36 52 0.54
38 20 0.21
39 3 0.03
40 6 0.06
42 8 0.08
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (37 bp):
TTTTAAAAACAATTTTTGAAAGATATATAATATATAG
Found at i:7019660 original size:3 final size:3
Alignment explanation
Indices: 7019640--7019712 Score: 69
Period size: 3 Copynumber: 23.7 Consensus size: 3
7019630 AAATGATTTT
* * *
7019640 TTA TTA TATA TTA ATA TTA TTTA TTT TTA TTCA TTA TTA TTA TTA TTG
1 TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA TTA
7019688 TT- TTA TTTA TTA TTA TTA TT- TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TT
7019713 TTCCAAAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
2 4 0.07
3 43 0.73
4 12 0.20
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7019677 original size:26 final size:25
Alignment explanation
Indices: 7019637--7019713 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
7019627 TAAAAATGAT
7019637 TTTTTATTATATATTAATATTATTTA
1 TTTTTATTAT-TATTAATATTATTTA
* *
7019663 TTTTTATTCATTATTATTATTATTGTT
1 TTTTTATT-ATTATTAATATTATT-TA
*
7019690 TTATTTATTATTATT-ATTTTATTT
1 TT-TTTATTATTATTAATATTATTT
7019714 TCCAAAATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 1 0.02
26 26 0.59
27 11 0.25
28 6 0.14
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (25 bp):
TTTTTATTATTATTAATATTATTTA
Found at i:7021097 original size:25 final size:26
Alignment explanation
Indices: 7021046--7021111 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
7021036 CTATATGCCA
*
7021046 TGTTT-TTTAATTTTTTTTCTTTGATT
1 TGTTTATTT-ATTTTTTTCCTTTGATT
7021072 TGTTTATTTATTTTTTTCCTTT-ATT
1 TGTTTATTTATTTTTTTCCTTTGATT
* *
7021097 T-ATTATTTAATTTTT
1 TGTTTATTTATTTTTT
7021112 ATTTGATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 12 0.33
25 4 0.11
26 17 0.47
27 3 0.08
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.76
Consensus pattern (26 bp):
TGTTTATTTATTTTTTTCCTTTGATT
Found at i:7026480 original size:85 final size:84
Alignment explanation
Indices: 7026330--7026731 Score: 486
Period size: 85 Copynumber: 4.8 Consensus size: 84
7026320 TGTTCGCAGA
* * *
7026330 ATAGCTTAAGGCGA-AAAGGGCTATATGTCAACAAAAGCCTTCTAGTTCGATTACATTCAGCTCA
1 ATAGCTCAAGGCGAGAAA-GGCTATCTGTCAACAAAA-CCTTCGAGTTCGATTACATTCAGCTCA
* * *
7026394 AGGGAATACCAAATTTATAGC
64 AGGGCATATCAAATTTACAGC
* *
7026415 AAAGCTCAAGGCGAGAATGGCTATCTGTCAACCAAAACCTTCGAGTTCGATTACATTCAGCTCAA
1 ATAGCTCAAGGCGAGAAAGGCTATCTGTCAA-CAAAACCTTCGAGTTCGATTACATTCAGCTCAA
* *
7026480 GGGCACATCAAATTTACAAC
65 GGGCATATCAAATTTACAGC
* * * *
7026500 ATAGCTCAAGGTGAGAAAGGTTATCCGTTAAC-AAACCTTCGAGTTCGATTACATTCAGCTCAAG
1 ATAGCTCAAGGCGAGAAAGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAAG
7026564 GGCATATCAAATTTACAGC
66 GGCATATCAAATTTACAGC
* * * * * *
7026583 ATAGCTTAAGGCCAGAAAGGCTATTTGTCAATAAAAACCTTCGAGTTCAATTATATTCAGCTCAA
1 ATAGCTCAAGGCGAGAAAGGCTATCTGTCAA-CAAAACCTTCGAGTTCGATTACATTCAGCTCAA
* *
7026648 TGGCATATCAAACTTACAGC
65 GGGCATATCAAATTTACAGC
* * ** *
7026668 ATAGCTCAAGGTGAG-AAGGTCTATCTGACAACAAAGACCTTCGAGTTTAATTTCATTCAGCTCA
1 ATAGCTCAAGGCGAGAAAGG-CTATCTGTCAACAAA-ACCTTCGAGTTCGATTACATTCAGCTCA
7026732 GTGACAGCAA
Statistics
Matches: 272, Mismatches: 39, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
83 73 0.27
84 8 0.03
85 184 0.68
86 7 0.03
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (84 bp):
ATAGCTCAAGGCGAGAAAGGCTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAAG
GGCATATCAAATTTACAGC
Found at i:7026673 original size:168 final size:170
Alignment explanation
Indices: 7026358--7026731 Score: 495
Period size: 168 Copynumber: 2.2 Consensus size: 170
7026348 GGCTATATGT
* *
7026358 CAACAAA-AGCCTTCTAGTTCGATTACATTCAGCTCAAGGGAATACCAAATTTATAGCAAAGCTC
1 CAACAAAGA-CCTTCGAGTTCGATTACATTCAGCTCAAGGGAATACCAAATTTACAGCAAAGCTC
* * * *
7026422 AAGGCGAGAATGGCTATCTGTCAACCAAAACCTTCGAGTTCGATTACATTCAGCTCAAGGGCACA
65 AAGGCCAGAAAGGCTATCTGTCAACAAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCACA
* *
7026487 TCAAATTTACAACATAGCTCAAGGTGAGAAAGGT-TATCCGT
130 TCAAACTTACAACATAGCTCAAGGTGAG-AAGGTCTATCCGA
* * * * *
7026528 TAAC-AA-ACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTTA
1 CAACAAAGACCTTCGAGTTCGATTACATTCAGCTCAAGGGAATACCAAATTTACAGCAAAGCTCA
* * * * *
7026591 AGGCCAGAAAGGCTATTTGTCAATAAAAACCTTCGAGTTCAATTATATTCAGCTCAATGGCATAT
66 AGGCCAGAAAGGCTATCTGTCAACAAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCACAT
* *
7026656 CAAACTTACAGCATAGCTCAAGGTGAGAAGGTCTATCTGA
131 CAAACTTACAACATAGCTCAAGGTGAGAAGGTCTATCCGA
** *
7026696 CAACAAAGACCTTCGAGTTTAATTTCATTCAGCTCA
1 CAACAAAGACCTTCGAGTTCGATTACATTCAGCTCA
7026732 GTGACAGCAA
Statistics
Matches: 177, Mismatches: 24, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
167 5 0.03
168 139 0.79
169 5 0.03
170 28 0.16
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (170 bp):
CAACAAAGACCTTCGAGTTCGATTACATTCAGCTCAAGGGAATACCAAATTTACAGCAAAGCTCA
AGGCCAGAAAGGCTATCTGTCAACAAAAACCTTCGAGTTCAATTACATTCAGCTCAAGGGCACAT
CAAACTTACAACATAGCTCAAGGTGAGAAGGTCTATCCGA
Found at i:7027380 original size:24 final size:23
Alignment explanation
Indices: 7027353--7027398 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7027343 AAAATGTATA
*
7027353 TATAATATATACTTTTTGAAAATG
1 TATAATATATA-GTTTTGAAAATG
*
7027377 TATACTATATAGTTTTGAAAAT
1 TATAATATATAGTTTTGAAAAT
7027399 ATTTTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (23 bp):
TATAATATATAGTTTTGAAAATG
Found at i:7027501 original size:38 final size:36
Alignment explanation
Indices: 7027365--7027515 Score: 160
Period size: 36 Copynumber: 4.1 Consensus size: 36
7027355 TAATATATAC
* * *
7027365 TTTTTGAAAATGTATACTATATAGTTTTGAAAA-TA
1 TTTTTGAAAATATATAATATATAGTTTTGAAAACAA
*
7027400 TTTTTGAAAATATATAATATATAGTTTTAAAAACAA
1 TTTTTGAAAATATATAATATATAGTTTTGAAAACAA
* * * * *
7027436 TTTTTGCAAATATATATTATGTGGTTTTGAAAACCA
1 TTTTTGAAAATATATAATATATAGTTTTGAAAACAA
* * *
7027472 TTTTTAAAAGCATATATAATATATAGTTTTTAAAAAAGA
1 TTTTTGAAA--ATATATAATATATAGTTTTGAAAACA-A
7027511 TTTTT
1 TTTTT
7027516 TATTATATAT
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
35 30 0.32
36 38 0.40
38 20 0.21
39 6 0.06
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (36 bp):
TTTTTGAAAATATATAATATATAGTTTTGAAAACAA
Found at i:7027532 original size:13 final size:13
Alignment explanation
Indices: 7027515--7027582 Score: 88
Period size: 13 Copynumber: 5.5 Consensus size: 13
7027505 AAAAGATTTT
*
7027515 TTATTATATATTA
1 TTATTATTTATTA
*
7027528 ATATTATTTA-T-
1 TTATTATTTATTA
*
7027539 TT-TTATTCATTA
1 TTATTATTTATTA
7027551 TTATTATTTATTA
1 TTATTATTTATTA
7027564 TTATTATTTATTA
1 TTATTATTTATTA
7027577 TTATTA
1 TTATTA
7027583 CTATTTTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
10 6 0.13
11 2 0.04
12 3 0.06
13 36 0.77
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:7027535 original size:3 final size:3
Alignment explanation
Indices: 7027515--7027592 Score: 77
Period size: 3 Copynumber: 24.7 Consensus size: 3
7027505 AAAAGATTTT
* *
7027515 TTA TTA TATA TTA ATA TTA TTTA TTT TTA TTCA TTA TTA TTA TTTA TTA
1 TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA TTA -TTA TTA
*
7027564 TTA TTA TTTA TTA TTA TTA CTA TT- TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TT
7027593 TTCAAAAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
2 2 0.03
3 46 0.73
4 15 0.24
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7027536 original size:23 final size:22
Alignment explanation
Indices: 7027510--7027581 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 22
7027500 TTTAAAAAAG
*
7027510 ATTTTTTATTATATATTAATATT
1 ATTTTTTATTAT-TATTATTATT
7027533 ATTTATTT-TTATTCATTATTATT
1 ATTT-TTTATTATT-ATTATTATT
*
7027556 ATTTATTATTATTATTTATTATT
1 ATTTTTTATTATTA-TTATTATT
7027579 ATT
1 ATT
7027582 ACTATTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
22 4 0.09
23 36 0.84
24 3 0.07
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTTTTATTATTATTATTATT
Found at i:7027554 original size:10 final size:9
Alignment explanation
Indices: 7027515--7027592 Score: 77
Period size: 10 Copynumber: 8.2 Consensus size: 9
7027505 AAAAGATTTT
7027515 TTATTATATA
1 TTATTAT-TA
*
7027525 TTAATATTA
1 TTATTATTA
*
7027534 TTTATTTTTA
1 -TTATTATTA
7027544 TTCATTATTA
1 TT-ATTATTA
7027554 TTATTTATTA
1 TTA-TTATTA
7027564 TTATTATTTA
1 TTATTA-TTA
7027574 TTATTATTA
1 TTATTATTA
*
7027583 CTATT-TTA
1 TTATTATTA
7027591 TT
1 TT
7027593 TTCAAAAAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
8 4 0.07
9 15 0.26
10 39 0.67
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (9 bp):
TTATTATTA
Found at i:7028727 original size:8 final size:8
Alignment explanation
Indices: 7028714--7028814 Score: 57
Period size: 8 Copynumber: 12.6 Consensus size: 8
7028704 ATTTTAACAC
7028714 TTTTTTTA
1 TTTTTTTA
7028722 -TTTTTTA
1 TTTTTTTA
7028729 TTTTATATTA
1 TTTT-T-TTA
*
7028739 TTTTTCCTTG
1 TTTTT--TTA
*
7028749 CTTTTTTA
1 TTTTTTTA
*
7028757 ---TTCTA
1 TTTTTTTA
7028762 TTTTTTTA
1 TTTTTTTA
*
7028770 TTTTTCTA
1 TTTTTTTA
*
7028778 TTTTTTTC
1 TTTTTTTA
**
7028786 TTTTAATA
1 TTTTTTTA
*
7028794 TTTTTTCA
1 TTTTTTTA
*
7028802 TTTTTTCA
1 TTTTTTTA
7028810 TTTTT
1 TTTTT
7028815 GTTTTATTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
5 4 0.06
7 7 0.10
8 45 0.63
9 2 0.03
10 13 0.18
ACGTcount: A:0.14, C:0.08, G:0.01, T:0.77
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7028778 original size:16 final size:16
Alignment explanation
Indices: 7028714--7028827 Score: 81
Period size: 16 Copynumber: 6.9 Consensus size: 16
7028704 ATTTTAACAC
7028714 TTTTTTTATTTTT-TA
1 TTTTTTTATTTTTCTA
7028729 TTTTATATTATTTTTCCT-
1 TTTT-T-TTATTTTT-CTA
** *
7028747 TGCTTTT-TTATTCTA
1 TTTTTTTATTTTTCTA
7028762 TTTTTTTATTTTTCTA
1 TTTTTTTATTTTTCTA
* **
7028778 TTTTTTTCTTTTAATA
1 TTTTTTTATTTTTCTA
* *
7028794 TTTTTTCATTTTTTCATT
1 TTTTTTTA-TTTTTC-TA
7028812 TTTGTTTTATTTTTCT
1 TTT-TTTTATTTTTCT
7028828 CCCTGAAATT
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
14 2 0.03
15 13 0.17
16 29 0.39
17 14 0.19
18 12 0.16
19 5 0.07
ACGTcount: A:0.13, C:0.08, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTTTTATTTTTCTA
Found at i:7028903 original size:4 final size:4
Alignment explanation
Indices: 7028894--7028928 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
7028884 ATAAAAATAT
7028894 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
7028929 TTCCTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:7029910 original size:6 final size:6
Alignment explanation
Indices: 7029899--7029927 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7029889 AAAATGATTC
7029899 ATTATA ATTATA ATTATA ATTATA ATTAT
1 ATTATA ATTATA ATTATA ATTATA ATTAT
7029928 TATATTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:7032355 original size:34 final size:35
Alignment explanation
Indices: 7032307--7032385 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
7032297 AACACAATCA
*
7032307 TCAATTACATTCT-AACCCCAAATTCTAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATACT
* **
7032341 TCAACTACATTCTAAACTTCAAATTCCAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATACT
7032376 TCAATTACAT
1 TCAATTACAT
7032386 GCCCAACTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 12 0.31
35 27 0.69
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCCAAAATACT
Found at i:7032400 original size:35 final size:35
Alignment explanation
Indices: 7032325--7032401 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
7032315 ATTCTAACCC
* * *
7032325 CAAATTCTAAAATACTTCAACTACATTCTAAACTT
1 CAAATTCCAAAATACTTCAACTACATGCCAAACTT
* *
7032360 CAAATTCCAAAATACTTCAATTACATGCCCAAC-T
1 CAAATTCCAAAATACTTCAACTACATGCCAAACTT
7032394 CTAAATTC
1 C-AAATTC
7032402 ATAATTCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 2 0.06
35 34 0.94
ACGTcount: A:0.42, C:0.26, G:0.01, T:0.31
Consensus pattern (35 bp):
CAAATTCCAAAATACTTCAACTACATGCCAAACTT
Found at i:7033163 original size:148 final size:147
Alignment explanation
Indices: 7032885--7033181 Score: 497
Period size: 148 Copynumber: 2.0 Consensus size: 147
7032875 AAACTATTTA
* * *
7032885 AATTAGAATCAAATAATATTATAATATTATAAATCTTTATAATTAAATTTAAACATAAACTCAAA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCAAA
*
7032950 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAAAAATTGAGCAACT
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCG-AAAAAAAATTAAGCAACT
7033015 ATTTTATAAATTAAATTG
130 ATTTTATAAATTAAATTG
*
7033033 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCAAA
* *
7033098 AATTCAATTCAATTCGACTTGTTTTAAATTTTATAAACTCAAATCG-AAAAAATTTCAAGCTAAC
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAAAATT-AAGC-AAC
7033162 TATTTTATAAATTAAATTG
129 TATTTTATAAATTAAATTG
7033181 A
1 A
7033182 GTATTTAAGT
Statistics
Matches: 140, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
146 8 0.06
147 3 0.02
148 129 0.92
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.37
Consensus pattern (147 bp):
AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCAAA
AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAAAATTAAGCAACTA
TTTTATAAATTAAATTG
Found at i:7033386 original size:35 final size:35
Alignment explanation
Indices: 7033347--7033426 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
7033337 GGGGTTGGAC
7033347 ATGTAATTGAAGTATTTT-GAAATTTAAGGTTTAAA
1 ATGTAATTGAAGTATTTTAG-AATTTAAGGTTTAAA
** *
7033382 ATGTAATTGAAGTATTTTAGAATTTGTGGTTTAGA
1 ATGTAATTGAAGTATTTTAGAATTTAAGGTTTAAA
7033417 ATGTAATTGA
1 ATGTAATTGA
7033427 TGATTGTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 40 0.98
36 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (35 bp):
ATGTAATTGAAGTATTTTAGAATTTAAGGTTTAAA
Found at i:7040498 original size:64 final size:64
Alignment explanation
Indices: 7040418--7040574 Score: 165
Period size: 64 Copynumber: 2.5 Consensus size: 64
7040408 TTGAAGGTGT
** ** * * * *
7040418 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATTGAATGCAATTTGTG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATACAATTTATG
7040481 C
64 C
* * *
7040482 ATCGATGCATAAGTAGTGCATCAATGCATCCCATTAATAAGGAAACATCGAATACATTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATACAATTTATGC
* *
7040546 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
7040575 ACCTTCATTA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
64 72 0.94
65 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATACAATTTATGC
Found at i:7043186 original size:31 final size:30
Alignment explanation
Indices: 7043151--7043244 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 30
7043141 GATCTAAAAT
7043151 TTTAGGGACTAATTTAGAATAAGATTCATAG
1 TTTAGGGACTAATTTAGAA-AAGATTCATAG
*
7043182 TTTAGGGA-TGAAATTT-G-AAAG-TTCAAAAG
1 TTTAGGGACT--AATTTAGAAAAGATTC-ATAG
* *
7043211 TTTAAGGACTAATTTAGAAGAA-ATTCATAA
1 TTTAGGGACTAATTTAGAA-AAGATTCATAG
7043241 TTTA
1 TTTA
7043245 AGGATGAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 17
0.71 0.06 0.24
Matches are distributed among these distances:
28 8 0.16
29 14 0.27
30 10 0.20
31 14 0.27
32 5 0.10
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.35
Consensus pattern (30 bp):
TTTAGGGACTAATTTAGAAAAGATTCATAG
Found at i:7043191 original size:60 final size:58
Alignment explanation
Indices: 7043123--7043276 Score: 200
Period size: 60 Copynumber: 2.6 Consensus size: 58
7043113 TCCTAAATTC
* * * *
7043123 TTAAGGATGAAATTGAAAGATCTAAAATTTTAGGGACTAATTTAGAATAAGATTCATAGT
1 TTAAGGATGAAATTGAAAGATC-AAAAGTTTAAGGACTAATTTAGAAGAA-ATTCATAAT
* *
7043183 TTAGGGATGAAATTTGAAAGTTCAAAAGTTTAAGGACTAATTTAGAAGAAATTCATAAT
1 TTAAGGATGAAA-TTGAAAGATCAAAAGTTTAAGGACTAATTTAGAAGAAATTCATAAT
* **
7043242 TTAAGGATGAAATTGAAATATTTAAAGTTTAAGGA
1 TTAAGGATGAAATTGAAAGATCAAAAGTTTAAGGA
7043277 TGAAATCCAT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
58 19 0.23
59 19 0.23
60 35 0.43
61 9 0.11
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (58 bp):
TTAAGGATGAAATTGAAAGATCAAAAGTTTAAGGACTAATTTAGAAGAAATTCATAAT
Found at i:7043618 original size:48 final size:48
Alignment explanation
Indices: 7043558--7043657 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
7043548 TACCCAAACA
7043558 GACCCAACTTACTATAAAC-CTGAATAAAACTGAAACCTGAAATGACCT
1 GACCCAACTTACTATAAACTC-GAATAAAACTGAAACCTGAAATGACCT
* *
7043606 GACCCGAA-TTACTATAAACTCGAATAAATCTGAAACCTGAAATGATCT
1 GACCC-AACTTACTATAAACTCGAATAAAACTGAAACCTGAAATGACCT
7043654 GACC
1 GACC
7043658 TGACCCGAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
48 45 0.94
49 3 0.06
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.22
Consensus pattern (48 bp):
GACCCAACTTACTATAAACTCGAATAAAACTGAAACCTGAAATGACCT
Found at i:7048507 original size:14 final size:15
Alignment explanation
Indices: 7048488--7048516 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7048478 GGGTTTGTTT
7048488 GAATTAA-GATGGAA
1 GAATTAATGATGGAA
7048502 GAATTAATGATGGAA
1 GAATTAATGATGGAA
7048517 ACGAGGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (15 bp):
GAATTAATGATGGAA
Found at i:7049339 original size:43 final size:43
Alignment explanation
Indices: 7049291--7049377 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
7049281 TTCTAAAATT
*
7049291 ATAATTTTAGTTGAAATGATTCTCCATAAAATACATAAATGAG
1 ATAATTTTAGTTGAAATAATTCTCCATAAAATACATAAATGAG
*
7049334 ATAATTTTAGTTGAAATAATTCTCCATAAAATACATTAATGAG
1 ATAATTTTAGTTGAAATAATTCTCCATAAAATACATAAATGAG
7049377 A
1 A
7049378 ATGGAATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (43 bp):
ATAATTTTAGTTGAAATAATTCTCCATAAAATACATAAATGAG
Found at i:7052669 original size:34 final size:34
Alignment explanation
Indices: 7052610--7052676 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
7052600 TTCTTGAGAG
*
7052610 TTGTTTTCTCCTTTTTATCAAGAGAGAA-TTGTCA
1 TTGTTTTCTCCTTTTGATC-AGAGAGAAGTTGTCA
7052644 TTGTTTTCTCCTTGTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTT-TT-GATCAGAGAGAAGTTGT
7052677 AATTCTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (34 bp):
TTGTTTTCTCCTTTTGATCAGAGAGAAGTTGTCA
Found at i:7054842 original size:21 final size:22
Alignment explanation
Indices: 7054816--7054856 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7054806 TTCGTCTTTT
7054816 GTTTATTATGAAT-CTCAAGAC
1 GTTTATTATGAATACTCAAGAC
*
7054837 GTTTATTTTGAATACTCAAG
1 GTTTATTATGAATACTCAAG
7054857 GTTGTGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (22 bp):
GTTTATTATGAATACTCAAGAC
Found at i:7058245 original size:38 final size:38
Alignment explanation
Indices: 7058194--7058267 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 38
7058184 AAATATATTA
*
7058194 TGAATAAGTTGGAA-ACTCTAACATTAGTCT-TAGGAATC
1 TGAATAAGTTGGAATA-TCCAACATTAGT-TATAGGAATC
7058232 TGAATAAGTTGGAATATCCAACATTAGTTATAGGAA
1 TGAATAAGTTGGAATATCCAACATTAGTTATAGGAA
7058268 ATCAAAAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
37 1 0.03
38 31 0.94
39 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (38 bp):
TGAATAAGTTGGAATATCCAACATTAGTTATAGGAATC
Found at i:7063649 original size:64 final size:64
Alignment explanation
Indices: 7063581--7063805 Score: 233
Period size: 64 Copynumber: 3.5 Consensus size: 64
7063571 TTGTTTGAAG
** ** *
7063581 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATGCAATT
*
7063644 T
64 A
*
7063645 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTA
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTA
* * * * * * *
7063709 GTGCATCGATGCATAAGGCA-TACATCGATGCATCCCAGTAATAATACAACATCGAATACATTTT
1 GTGCATCGATGCATAA-GTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCA-ATT
7063773 A
64 A
* * *
7063774 -TGCACCGATGCATCAGTAGTGCATAGATGCAT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCAT
7063806 ACCTTCATTA
Statistics
Matches: 136, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
63 2 0.01
64 124 0.91
65 10 0.07
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (64 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTA
Found at i:7064637 original size:23 final size:23
Alignment explanation
Indices: 7064604--7064666 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7064594 ATTATTATAT
7064604 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
7064627 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
7064650 GGCATTTCGGTGCAATT
1 GGCACTACGGTGCAATT
7064667 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:7069200 original size:19 final size:19
Alignment explanation
Indices: 7069176--7069227 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
7069166 AATGCAATTT
7069176 GTGCATCGATGCATAAATA
1 GTGCATCGATGCATAAATA
*
7069195 GTGCATCGATGCATAAGTA
1 GTGCATCGATGCATAAATA
7069214 GTGCATCGATGCAT
1 GTGCATCGATGCAT
7069228 CCCATTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (19 bp):
GTGCATCGATGCATAAATA
Found at i:7069215 original size:83 final size:83
Alignment explanation
Indices: 7069112--7069274 Score: 231
Period size: 83 Copynumber: 2.0 Consensus size: 83
7069102 TTGTTTGAAG
** ** *
7069112 GTGCATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATT
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATGCAATT
*
7069175 TGTGCATCGATGCATAAATA
64 AGTGCATCGATGCATAAATA
*
7069195 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTAG
1 GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAG
7069260 TGCATCGATGCATAA
66 TGCATCGATGCATAA
7069275 GGCATGAATC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
83 66 0.93
84 5 0.07
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (83 bp):
GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAG
TGCATCGATGCATAAATA
Found at i:7069261 original size:64 final size:65
Alignment explanation
Indices: 7069193--7069355 Score: 208
Period size: 64 Copynumber: 2.5 Consensus size: 65
7069183 GATGCATAAA
* *
7069193 TAGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGA-AACATCGAATGCA-A
1 TAGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAA-GACAACATCGAATACATA
7069256 T
65 T
* * * *
7069257 TAGTGCATCGATGCATAAGGCA-TGAATCGATGCATCCCAGTAATAATACAACATCGAATACATT
1 TAGTGCATCGATGCATAA-GTAGTGCATCGATGCATCCCAGTAATAAGACAACATCGAATACATA
7069321 T
65 T
* *
7069322 TA-TGCACCGATGCATCAGTAGTGCATCGATGCAT
1 TAGTGCATCGATGCATAAGTAGTGCATCGATGCAT
7069356 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
63 3 0.04
64 77 0.91
65 5 0.06
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (65 bp):
TAGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAAGACAACATCGAATACATAT
Found at i:7070178 original size:23 final size:23
Alignment explanation
Indices: 7070145--7070207 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
7070135 ATTATTATAT
7070145 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
7070168 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
*
7070191 GGCACTTCGGTGCAATT
1 GGCACTACGGTGCAATT
7070208 ATGAGCTGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:7078391 original size:9 final size:9
Alignment explanation
Indices: 7078377--7078402 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7078367 AAGGGAAAAG
7078377 TGACCGGTT
1 TGACCGGTT
7078386 TGACCGGTT
1 TGACCGGTT
7078395 TGACCGGT
1 TGACCGGT
7078403 CACAACCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (9 bp):
TGACCGGTT
Found at i:7078429 original size:13 final size:13
Alignment explanation
Indices: 7078429--7078463 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7078419 CCGTTGACCC
*
7078429 GACCCGACTCGTT
1 GACCCGACCCGTT
*
7078442 TACCCGACCCGTT
1 GACCCGACCCGTT
7078455 GACCCGACC
1 GACCCGACC
7078464 TGACCCGTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.17, C:0.46, G:0.20, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:7078430 original size:18 final size:18
Alignment explanation
Indices: 7078407--7078478 Score: 82
Period size: 18 Copynumber: 4.3 Consensus size: 18
7078397 ACCGGTCACA
7078407 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
7078425 ACCCGACCCGACTCGTT-
1 ACCCGACCCGACCCGTTG
*
7078442 ----TACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
7078456 ACCCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
7078474 ACCCG
1 ACCCG
7078479 TTGACCGTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 11 0.25
18 33 0.75
ACGTcount: A:0.17, C:0.47, G:0.21, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:7078448 original size:31 final size:31
Alignment explanation
Indices: 7078411--7078478 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
7078401 GTCACAACCC
*
7078411 GACCCGACCCGTTGACCCGACCCGACTCGTT
1 GACCCGACCCGTTGACCCGACCCGACCCGTT
* *
7078442 TACCCGACCCGTTGACCCGACCTGACCCGTT
1 GACCCGACCCGTTGACCCGACCCGACCCGTT
7078473 GACCCG
1 GACCCG
7078479 TTGACCGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.16, C:0.46, G:0.22, T:0.16
Consensus pattern (31 bp):
GACCCGACCCGTTGACCCGACCCGACCCGTT
Found at i:7078460 original size:8 final size:8
Alignment explanation
Indices: 7078447--7078511 Score: 60
Period size: 10 Copynumber: 7.5 Consensus size: 8
7078437 TCGTTTACCC
7078447 GACCCGTT
1 GACCCGTT
*
7078455 GACCCGACCT
1 GACCCG--TT
7078465 GACCCGTT
1 GACCCGTT
7078473 GACCCGTT
1 GACCCGTT
7078481 GA-CCGTT
1 GACCCGTT
7078488 GACCGTCGTT
1 GACC--CGTT
7078498 GACCACTGTT
1 GACC-C-GTT
7078508 GACC
1 GACC
7078512 AAAGCTTTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
7 7 0.15
8 18 0.38
9 1 0.02
10 22 0.46
ACGTcount: A:0.15, C:0.37, G:0.25, T:0.23
Consensus pattern (8 bp):
GACCCGTT
Found at i:7078488 original size:15 final size:16
Alignment explanation
Indices: 7078468--7078501 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
7078458 CCGACCTGAC
7078468 CCGTTGACC-CGTTGA
1 CCGTTGACCGCGTTGA
7078483 CCGTTGACCGTCGTTGA
1 CCGTTGACCG-CGTTGA
7078500 CC
1 CC
7078502 ACTGTTGACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.12, C:0.35, G:0.26, T:0.26
Consensus pattern (16 bp):
CCGTTGACCGCGTTGA
Found at i:7081072 original size:24 final size:24
Alignment explanation
Indices: 7080983--7081084 Score: 89
Period size: 24 Copynumber: 4.2 Consensus size: 24
7080973 TTATCCGATT
* * *
7080983 TCTGATTTGAATTCTGTTTTGACA
1 TCTGATCTGAATTCTGTTCTGATA
*
7081007 TCTGATCTGAAATCTGTTCTGAT-
1 TCTGATCTGAATTCTGTTCTGATA
* * * *
7081030 TCCTAACCCGGATTCTGTTCTGATA
1 T-CTGATCTGAATTCTGTTCTGATA
* * *
7081055 TCTGATCTGAATTATGTTTTGATT
1 TCTGATCTGAATTCTGTTCTGATA
7081079 TCTGAT
1 TCTGAT
7081085 ATCTCCGTTT
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
23 1 0.02
24 58 0.97
25 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.46
Consensus pattern (24 bp):
TCTGATCTGAATTCTGTTCTGATA
Found at i:7083166 original size:18 final size:18
Alignment explanation
Indices: 7083143--7083201 Score: 100
Period size: 18 Copynumber: 3.3 Consensus size: 18
7083133 ACCGGTCACA
7083143 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
7083161 ACCCGACCCGACCTGTTG
1 ACCCGACCCGACCCGTTG
*
7083179 AACCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
7083197 ACCCG
1 ACCCG
7083202 TTGACCGTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.19, C:0.47, G:0.22, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:7083211 original size:15 final size:15
Alignment explanation
Indices: 7083191--7083224 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7083181 CCGACCCGAC
7083191 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
7083206 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
7083221 CCGT
1 CCGT
7083225 CGTTGACCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.12, C:0.35, G:0.26, T:0.26
Consensus pattern (15 bp):
CCGTTGACCCGTTGA
Found at i:7083230 original size:10 final size:8
Alignment explanation
Indices: 7083188--7083242 Score: 67
Period size: 8 Copynumber: 6.5 Consensus size: 8
7083178 GAACCGACCC
7083188 GACCCGTT
1 GACCCGTT
7083196 GACCCGTT
1 GACCCGTT
7083204 GA-CCGTT
1 GACCCGTT
7083211 GACCCGTT
1 GACCCGTT
7083219 GACCGTCGTT
1 GACC--CGTT
7083229 GACCACTGTT
1 GACC-C-GTT
7083239 GACC
1 GACC
7083243 AAAACTTTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
7 7 0.17
8 19 0.45
9 1 0.02
10 15 0.36
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (8 bp):
GACCCGTT
Found at i:7085804 original size:24 final size:24
Alignment explanation
Indices: 7085700--7085806 Score: 106
Period size: 24 Copynumber: 4.5 Consensus size: 24
7085690 ATATTTTATC
* *
7085700 TGATTTCTGATTTGAATTCTGTTT
1 TGATTTCTGATCTGAATTATGTTT
** * * *
7085724 TGACATCTGATCTGAAATCTGTTC
1 TGATTTCTGATCTGAATTATGTTT
* * * *
7085748 TGATTCCTAACCTGGATTATGTTT
1 TGATTTCTGATCTGAATTATGTTT
*
7085772 TGATATCTGATCTGAATTATGTTT
1 TGATTTCTGATCTGAATTATGTTT
7085796 TGATTTCTGAT
1 TGATTTCTGAT
7085807 ATCTCCGTTT
Statistics
Matches: 63, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTATGTTT
Found at i:7086933 original size:45 final size:46
Alignment explanation
Indices: 7086878--7086984 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 46
7086868 GCACCAATCC
*
7086878 ATGCATCGATGCACCATGA-ATTAAATTG-AACATCGAATGCATTTT
1 ATGCATCGATGCACCATGAGATTAAA-TGAAACATCGAATGCATTTG
**
7086923 ATGCATCGATGCA-C-TGAGGATTTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACCATGA-GATTAAATG-AAACATCGAATGCATTTG
7086969 ATGCATCGATGCACCA
1 ATGCATCGATGCACCA
7086985 GCCATACATC
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 17 0.32
46 29 0.55
47 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCATCGATGCACCATGAGATTAAATGAAACATCGAATGCATTTG
Found at i:7092875 original size:42 final size:44
Alignment explanation
Indices: 7092828--7092922 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
7092818 TTGTGCTTCA
**
7092828 TGCATCGATACACC-T-AACAGTGCATGGATGCAT-CCTTGAATG
1 TGCATCGATACACCATGAA-AGTGCACCGATGCATGCCTTGAATG
*
7092870 TGCATCGATACACCATGAAGGTGCACCGATGCATGCCTTGAATG
1 TGCATCGATACACCATGAAAGTGCACCGATGCATGCCTTGAATG
7092914 TGCATCGAT
1 TGCATCGAT
7092923 GAACAAGGCC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
42 14 0.30
43 13 0.28
44 20 0.43
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (44 bp):
TGCATCGATACACCATGAAAGTGCACCGATGCATGCCTTGAATG
Found at i:7092916 original size:23 final size:22
Alignment explanation
Indices: 7092847--7092923 Score: 93
Period size: 21 Copynumber: 3.5 Consensus size: 22
7092837 ACACCTAACA
*
7092847 GTGCATGGATGCATCCTTGAAT
1 GTGCATCGATGCATCCTTGAAT
* * *
7092869 GTGCATCGATACA-CCATGAAG
1 GTGCATCGATGCATCCTTGAAT
*
7092890 GTGCACCGATGCATGCCTTGAAT
1 GTGCATCGATGCAT-CCTTGAAT
7092913 GTGCATCGATG
1 GTGCATCGATG
7092924 AACAAGGCCA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 17 0.39
22 11 0.25
23 16 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:7092943 original size:43 final size:42
Alignment explanation
Indices: 7092846--7092948 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 42
7092836 TACACCTAAC
* * *
7092846 AGTGCATGGATGCATCCTTGAATGTGCATCGATACACCATGA
1 AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAAGGA
* *
7092888 AGGTGCACCGATGCATGCCTTGAATGTGCATCGATGA-ACAAGGCC
1 A-GTGCATCGATGCAT-CCTTGAATGTGCATCGAT-ACACAAGG-A
7092933 A-TGCATCGATGCATCC
1 AGTGCATCGATGCATCC
7092949 ATCAGGTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 3 0.06
43 24 0.47
44 22 0.43
45 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (42 bp):
AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAAGGA
Found at i:7093636 original size:22 final size:22
Alignment explanation
Indices: 7093602--7093649 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
7093592 AAGTGTTAAA
*
7093602 GGGG-AGAATTGTTGTAGTAAG
1 GGGGAAGAAGTGTTGTAGTAAG
7093623 GGGGAAGAAGTGTTGTAGTAAG
1 GGGGAAGAAGTGTTGTAGTAAG
7093645 GGGGA
1 GGGGA
7093650 GTAATTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (22 bp):
GGGGAAGAAGTGTTGTAGTAAG
Found at i:7094132 original size:19 final size:19
Alignment explanation
Indices: 7094108--7094159 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
7094098 AATGCATTTG
7094108 ATGCATCGATGCACCAACC
1 ATGCATCGATGCACCAACC
7094127 ATGCATCGATGCACCAACC
1 ATGCATCGATGCACCAACC
*
7094146 ATGCATTGATGCAC
1 ATGCATCGATGCAC
7094160 TCTGGCTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (19 bp):
ATGCATCGATGCACCAACC
Found at i:7094135 original size:84 final size:83
Alignment explanation
Indices: 7094042--7094195 Score: 204
Period size: 84 Copynumber: 1.8 Consensus size: 83
7094032 GAATGCATTT
* * * *
7094042 CATGTATCGATGCA-CATACCATGCATCGATGCACTGAGGAT-TTTATGAAAACATTGAATGCAT
1 CATGCATCGATGCACCA-ACCATGCATCGATGCACTCAGGATATTT-TG-AAACATCGAATGCAC
7094105 TTGATGCATCGATGCACCAAC
63 TTGATGCATCGATGCACCAAC
* * *
7094126 CATGCATCGATGCACCAACCATGCATTGATGCACTCTGGCTATTTTGAAACATCGAATGCACTTG
1 CATGCATCGATGCACCAACCATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCACTTG
7094191 ATGCA
66 ATGCA
7094196 AAATATTTGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
83 21 0.34
84 35 0.57
85 5 0.08
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (83 bp):
CATGCATCGATGCACCAACCATGCATCGATGCACTCAGGATATTTTGAAACATCGAATGCACTTG
ATGCATCGATGCACCAAC
Found at i:7094991 original size:12 final size:12
Alignment explanation
Indices: 7094974--7094998 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7094964 AAAATAATTG
7094974 GTAGAAGCAGAA
1 GTAGAAGCAGAA
7094986 GTAGAAGCAGAA
1 GTAGAAGCAGAA
7094998 G
1 G
7094999 ACAAAGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.36, T:0.08
Consensus pattern (12 bp):
GTAGAAGCAGAA
Found at i:7105743 original size:22 final size:23
Alignment explanation
Indices: 7105712--7105755 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7105702 CGGTAGGGGG
*
7105712 TATCGGTACCATAGT-AGGGTAA
1 TATCGATACCATAGTAAGGGTAA
*
7105734 TATCGATACCATGGTAAGGGTA
1 TATCGATACCATAGTAAGGGTA
7105756 TCCATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (23 bp):
TATCGATACCATAGTAAGGGTAA
Found at i:7106405 original size:165 final size:165
Alignment explanation
Indices: 7106124--7106489 Score: 511
Period size: 165 Copynumber: 2.2 Consensus size: 165
7106114 AAGAACTTCA
* *
7106124 TGTGCATATTCACGAAATTCATCATGAGTTGATGAATCACCGTACAGGCACTTCATGTGCATATT
1 TGTGCATATTCACGAAATTCATCATGAGTTGATGAATCACCATACAAGCACTTCATGTGCATATT
* * *
7106189 CATGGAATTCATCATGAGTTCATGAATCACCATACAGGAACTTCATGTGCATATTCATAGAATTC
66 CAAGGAATTCATCATGAGTTCATAAATCACCATACAGGAACTTCATGTGCATATTCACAGAATTC
* * *
7106254 ATCAAGAGTTGATGAATCACCATACATGCACTTTG
131 ATCAAGAGTTAATGAATCACCATACAGGCACTATG
* * *
7106289 TGTGCATATTCACGGAATTCATCATTAGTTGATGAATCACCATTCAAGCACTTCATGTGCATATT
1 TGTGCATATTCACGAAATTCATCATGAGTTGATGAATCACCATACAAGCACTTCATGTGCATATT
* * * *
7106354 CAAGGAATTCATCATGAGTTGATAAATCACCGTACAGGCACTTCGTGTGCATATTCACAGAATTC
66 CAAGGAATTCATCATGAGTTCATAAATCACCATACAGGAACTTCATGTGCATATTCACAGAATTC
* * *
7106419 ATCATGAGTTAATGAATCACCGTGCAGGCACTATG
131 ATCAAGAGTTAATGAATCACCATACAGGCACTATG
*** *
7106454 TGTGCA-GCCCAC-ATAATTCATCATAAGTTGATGAAT
1 TGTGCATATTCACGA-AATTCATCATGAGTTGATGAAT
7106490 TATGTGTGCA
Statistics
Matches: 177, Mismatches: 23, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
164 24 0.14
165 153 0.86
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (165 bp):
TGTGCATATTCACGAAATTCATCATGAGTTGATGAATCACCATACAAGCACTTCATGTGCATATT
CAAGGAATTCATCATGAGTTCATAAATCACCATACAGGAACTTCATGTGCATATTCACAGAATTC
ATCAAGAGTTAATGAATCACCATACAGGCACTATG
Found at i:7106457 original size:55 final size:55
Alignment explanation
Indices: 7106118--7106489 Score: 455
Period size: 55 Copynumber: 6.8 Consensus size: 55
7106108 TACTACAAGA
*
7106118 ACTTCATGTGCATATTCAC-GAAATTCATCATGAGTTGATGAATCACCGTACAGGC
1 ACTTCATGTGCATATTCACAG-AATTCATCATGAGTTGATGAATCACCATACAGGC
** * *
7106173 ACTTCATGTGCATATTCATGGAATTCATCATGAGTTCATGAATCACCATACAGGA
1 ACTTCATGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCATACAGGC
* * *
7106228 ACTTCATGTGCATATTCATAGAATTCATCAAGAGTTGATGAATCACCATACATGC
1 ACTTCATGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCATACAGGC
** * * * *
7106283 ACTTTGTGTGCATATTCACGGAATTCATCATTAGTTGATGAATCACCATTCAAGC
1 ACTTCATGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCATACAGGC
* *
7106338 ACTTCATGTGCATATTCA-AGGAATTCATCATGAGTTGATAAATCACCGTACAGGC
1 ACTTCATGTGCATATTCACA-GAATTCATCATGAGTTGATGAATCACCATACAGGC
* * * *
7106393 ACTTCGTGTGCATATTCACAGAATTCATCATGAGTTAATGAATCACCGTGCAGGC
1 ACTTCATGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCATACAGGC
* *** * *
7106448 ACTAT-GTGTGCA-GCCCACATAATTCATCATAAGTTGATGAAT
1 ACT-TCATGTGCATATTCACAGAATTCATCATGAGTTGATGAAT
7106490 TATGTGTGCA
Statistics
Matches: 278, Mismatches: 35, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
54 24 0.09
55 251 0.90
56 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (55 bp):
ACTTCATGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCATACAGGC
Found at i:7106505 original size:40 final size:40
Alignment explanation
Indices: 7106450--7106530 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
7106440 GTGCAGGCAC
7106450 TATGTGTGCAGCCCACATAATTCATCATAAGTTGATGAAT
1 TATGTGTGCAGCCCACATAATTCATCATAAGTTGATGAAT
7106490 TATGTGTGCAGCCCACATAATTCATCATAAGTTGATGAAT
1 TATGTGTGCAGCCCACATAATTCATCATAAGTTGATGAAT
7106530 T
1 T
7106531 CTCGTATAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (40 bp):
TATGTGTGCAGCCCACATAATTCATCATAAGTTGATGAAT
Found at i:7115596 original size:23 final size:24
Alignment explanation
Indices: 7115544--7115596 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
7115534 GTGCTTTTAA
* *
7115544 CTTTTTTTTGAGTGCTTGATTTTT
1 CTTTTTTTAGAGTGCTTGACTTTT
*
7115568 CTTTTTTTAGAGTGTTTGACTTTT
1 CTTTTTTTAGAGTGCTTGACTTTT
7115592 CTTTT
1 CTTTT
7115597 CTGATTTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.09, C:0.09, G:0.15, T:0.66
Consensus pattern (24 bp):
CTTTTTTTAGAGTGCTTGACTTTT
Found at i:7117487 original size:19 final size:20
Alignment explanation
Indices: 7117463--7117536 Score: 80
Period size: 22 Copynumber: 3.6 Consensus size: 20
7117453 AATCTATTTT
7117463 GGTATCGATACC-TGTAGGG
1 GGTATCGATACCATGTAGGG
*
7117482 GGTATCGGTACCATAGTAGGG
1 GGTATCGATACCAT-GTAGGG
* *
7117503 TAGTATCGATACCATGATA-AG
1 -GGTATCGATACCATG-TAGGG
7117524 GGTATCGATACCA
1 GGTATCGATACCA
7117537 GGAAACATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
19 11 0.24
20 13 0.28
21 8 0.17
22 14 0.30
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (20 bp):
GGTATCGATACCATGTAGGG
Found at i:7117542 original size:94 final size:95
Alignment explanation
Indices: 7117411--7117594 Score: 298
Period size: 94 Copynumber: 1.9 Consensus size: 95
7117401 CGACAAGGTG
* *
7117411 GTATCGATACCATGATAAGGGTATCGATATCAAGAAACATCGAATCTA-TTTTGGTATCGATACC
1 GTATCGATACCATGATAAGGGTATCGATACCAAGAAACATCGAACCTATTTTTGGTATCGATACC
* * *
7117475 TGTAGGGGGTATCGGTACCATAGTAGGGTA
66 CGAAGGGGGTATCGATACCATAGTAGGGTA
*
7117505 GTATCGATACCATGATAAGGGTATCGATACCAGGAAACATCGAACCTATTTTTGGTATCGATACC
1 GTATCGATACCATGATAAGGGTATCGATACCAAGAAACATCGAACCTATTTTTGGTATCGATACC
*
7117570 CGAATGGGGTATCGATACCATAGTA
66 CGAAGGGGGTATCGATACCATAGTA
7117595 TAGAAGTATC
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 45 0.55
95 37 0.45
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (95 bp):
GTATCGATACCATGATAAGGGTATCGATACCAAGAAACATCGAACCTATTTTTGGTATCGATACC
CGAAGGGGGTATCGATACCATAGTAGGGTA
Found at i:7117624 original size:95 final size:94
Alignment explanation
Indices: 7117411--7117629 Score: 260
Period size: 95 Copynumber: 2.3 Consensus size: 94
7117401 CGACAAGGTG
* * * * *
7117411 GTATCGATACCATGATAAGGGTATCGATATCAAGAAACATCGAATCTATTTTGGTATCGATACCT
1 GTATCGATACCAGGATAAGAGTATCGATACCAAGAAACATCGAACCTATTTTGGTATCGATACCC
* * * *
7117476 GTAGGGGGTATCGGTACCATAGTAGGGTA
66 GAAGGGGGTATCGATACCATAGTAGAGAA
* * *
7117505 GTATCGATACCATGATAAGGGTATCGATACCAGGAAACATCGAACCTATTTTTGGTATCGATACC
1 GTATCGATACCAGGATAAGAGTATCGATACCAAGAAACATCGAACCTA-TTTTGGTATCGATACC
* *
7117570 CGAATGGGGTATCGATACCATAGTATAGAA
65 CGAAGGGGGTATCGATACCATAGTAGAGAA
* * *
7117600 GTATCGTTACTAGGGT-AGTAGTATCGATAC
1 GTATCGATACCAGGATAAG-AGTATCGATAC
7117630 TATGGAGCCA
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
94 47 0.44
95 61 0.56
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (94 bp):
GTATCGATACCAGGATAAGAGTATCGATACCAAGAAACATCGAACCTATTTTGGTATCGATACCC
GAAGGGGGTATCGATACCATAGTAGAGAA
Found at i:7144609 original size:21 final size:21
Alignment explanation
Indices: 7144580--7144632 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7144570 ACTCATAGGG
*
7144580 GTATTGATACTTGACCCTAGA
1 GTATCGATACTTGACCCTAGA
*
7144601 GTATCGATACTTGACCCTAGG
1 GTATCGATACTTGACCCTAGA
7144622 GTATCGATACT
1 GTATCGATACT
7144633 ACAAGTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (21 bp):
GTATCGATACTTGACCCTAGA
Found at i:7146416 original size:20 final size:21
Alignment explanation
Indices: 7146367--7146422 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
7146357 AAACTATTTG
*
7146367 TGGGTACCGATACTAAGCCCC
1 TGGGTATCGATACTAAGCCCC
** *
7146388 TCAGTATCGATACTAAG-CTC
1 TGGGTATCGATACTAAGCCCC
*
7146408 TGGGTATCGGTACTA
1 TGGGTATCGATACTA
7146423 GTGACTTATT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (21 bp):
TGGGTATCGATACTAAGCCCC
Found at i:7146669 original size:13 final size:13
Alignment explanation
Indices: 7146651--7146681 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7146641 AATAATATCG
7146651 GTACTATTCTTCC
1 GTACTATTCTTCC
*
7146664 GTACTATTCTTCT
1 GTACTATTCTTCC
7146677 GTACT
1 GTACT
7146682 GATATTCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.26, G:0.10, T:0.48
Consensus pattern (13 bp):
GTACTATTCTTCC
Found at i:7151210 original size:25 final size:25
Alignment explanation
Indices: 7151169--7151221 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
7151159 ATCAGTAAAG
*
7151169 AAATTGAAGCAATC-AAAAGAAGAA
1 AAATTGAAGCAACCAAAAAGAAGAA
*
7151193 AAATTGCAAGCACCCAAAAAGAAGAA
1 AAATTG-AAGCAACCAAAAAGAAGAA
7151219 AAA
1 AAA
7151222 AAAGAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.24
25 6 0.24
26 13 0.52
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.09
Consensus pattern (25 bp):
AAATTGAAGCAACCAAAAAGAAGAA
Found at i:7151233 original size:14 final size:14
Alignment explanation
Indices: 7151214--7151244 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7151204 ACCCAAAAAG
7151214 AAGAAAAAAAAGAA
1 AAGAAAAAAAAGAA
*
7151228 AAGAAAAGAAAGAA
1 AAGAAAAAAAAGAA
7151242 AAG
1 AAG
7151245 TTGAAAGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAGAA
Found at i:7159360 original size:21 final size:22
Alignment explanation
Indices: 7159334--7159375 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7159324 ACTAGTATCT
7159334 GAAGTGCCCTAGCACT-ATATG
1 GAAGTGCCCTAGCACTGATATG
*
7159355 GAAGTGCCTTAGCACTGATAT
1 GAAGTGCCCTAGCACTGATAT
7159376 ACTAAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
GAAGTGCCCTAGCACTGATATG
Found at i:7159407 original size:24 final size:24
Alignment explanation
Indices: 7159332--7159416 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 24
7159322 CGACTAGTAT
*
7159332 CTGAAGTGCCCTAGCACT-AT--A
1 CTGAAGTGCCTTAGCACTAATACA
* *
7159353 -TGGAAGTGCCTTAGCACTGATATA
1 CT-GAAGTGCCTTAGCACTAATACA
* *
7159377 CTAAAGTACCTTAGCACTAATACA
1 CTGAAGTGCCTTAGCACTAATACA
* *
7159401 TTGAAGTGCCATAGCA
1 CTGAAGTGCCTTAGCA
7159417 TTGAACTAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
20 1 0.02
21 15 0.30
22 2 0.04
24 31 0.62
25 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (24 bp):
CTGAAGTGCCTTAGCACTAATACA
Found at i:7160398 original size:20 final size:21
Alignment explanation
Indices: 7160370--7160414 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7160360 CTGATATGAG
*
7160370 TATCGATACT-ACAAGAACAA
1 TATCAATACTCACAAGAACAA
*
7160390 TATCAATACTCACAAGAACAT
1 TATCAATACTCACAAGAACAA
7160411 TATC
1 TATC
7160415 GCCACTACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.47, C:0.22, G:0.07, T:0.24
Consensus pattern (21 bp):
TATCAATACTCACAAGAACAA
Found at i:7163628 original size:26 final size:27
Alignment explanation
Indices: 7163577--7163629 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7163567 ATAATTAAGT
* *
7163577 AAAAATTTAATTTAGTCCCTGGAATTA
1 AAAAATGTAATTTAGTCCCTGAAATTA
*
7163604 AAAAATGTAATTTATTCCCT-AAATTA
1 AAAAATGTAATTTAGTCCCTGAAATTA
7163630 GGTTGGTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (27 bp):
AAAAATGTAATTTAGTCCCTGAAATTA
Found at i:7170299 original size:25 final size:25
Alignment explanation
Indices: 7170258--7170310 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
7170248 ATCAGCAAAG
*
7170258 AAATTGAAGCAATC-AAAAGAAGAA
1 AAATTGAAGCAACCAAAAAGAAGAA
*
7170282 AAATTGCAAGCACCCAAAAAGAAGAA
1 AAATTG-AAGCAACCAAAAAGAAGAA
7170308 AAA
1 AAA
7170311 AAAAAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.24
25 6 0.24
26 13 0.52
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.09
Consensus pattern (25 bp):
AAATTGAAGCAACCAAAAAGAAGAA
Found at i:7176394 original size:23 final size:23
Alignment explanation
Indices: 7176366--7176409 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7176356 ATGACTTTGG
* * *
7176366 TATAATTTCATTTTATATGTTCA
1 TATAATATCATATGATATGTTCA
7176389 TATAATATCATATGATATGTT
1 TATAATATCATATGATATGTT
7176410 TTCTATTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (23 bp):
TATAATATCATATGATATGTTCA
Found at i:7177497 original size:21 final size:22
Alignment explanation
Indices: 7177473--7177514 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7177463 ACTAGTATCT
7177473 GAAGTGCCCTAGCACT-ATATG
1 GAAGTGCCCTAGCACTGATATG
*
7177494 GAAGTGCCTTAGCACTGATAT
1 GAAGTGCCCTAGCACTGATAT
7177515 ACTAAAGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
GAAGTGCCCTAGCACTGATATG
Found at i:7177546 original size:24 final size:22
Alignment explanation
Indices: 7177472--7177555 Score: 80
Period size: 24 Copynumber: 3.7 Consensus size: 22
7177462 GACTAGTATC
*
7177472 TGAAGTGCCCTAGCACTAT-AT
1 TGAAGTGCCTTAGCACTATAAT
* *
7177493 GGAAGTGCCTTAGCACTGATATAC
1 TGAAGTGCCTTAGCACT-ATA-AT
*
7177517 TAAAGTGCCTTAGCACTAATACAT
1 TGAAGTGCCTTAGCACT-ATA-AT
*
7177541 TGAAGTGCCATAGCA
1 TGAAGTGCCTTAGCA
7177556 TTGAACTAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 15 0.30
22 2 0.04
24 33 0.66
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (22 bp):
TGAAGTGCCTTAGCACTATAAT
Found at i:7178560 original size:21 final size:20
Alignment explanation
Indices: 7178510--7178562 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
7178500 CTGATATTAG
7178510 TATCGATACTACAAGAACAA
1 TATCGATACTACAAGAACAA
* *
7178530 TATCAATACTCACAAGAACAT
1 TATCGATACT-ACAAGAACAA
*
7178551 TATCGCTACTAC
1 TATCGATACTAC
7178563 GACCTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.25
Consensus pattern (20 bp):
TATCGATACTACAAGAACAA
Found at i:7184787 original size:21 final size:20
Alignment explanation
Indices: 7184761--7184806 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7184751 TGGGTACCGA
7184761 TACTAAGCCCCTCAGTATCGG
1 TACTAAG-CCCTCAGTATCGG
* **
7184782 TACTAAGCTCTGGGTATCGG
1 TACTAAGCCCTCAGTATCGG
7184802 TACTA
1 TACTA
7184807 GTGACTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (20 bp):
TACTAAGCCCTCAGTATCGG
Found at i:7189910 original size:14 final size:14
Alignment explanation
Indices: 7189891--7189921 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7189881 ACCCAAAAAG
7189891 AAGAAAAAAAAGAA
1 AAGAAAAAAAAGAA
*
7189905 AAGAAAAGAAAGAA
1 AAGAAAAAAAAGAA
7189919 AAG
1 AAG
7189922 TTGAAAGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAGAA
Found at i:7195963 original size:23 final size:23
Alignment explanation
Indices: 7195935--7195978 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7195925 ATGAATTTGG
* * *
7195935 TATAATTTCATTTTATATGTTCA
1 TATAATATCATATGATATGTTCA
7195958 TATAATATCATATGATATGTT
1 TATAATATCATATGATATGTT
7195979 TTCTATTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (23 bp):
TATAATATCATATGATATGTTCA
Found at i:7198050 original size:21 final size:22
Alignment explanation
Indices: 7198024--7198065 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7198014 ACTAGTATCT
7198024 GAAGTGCCCTAGCACT-ATATG
1 GAAGTGCCCTAGCACTGATATG
*
7198045 GAAGTGCCTTAGCACTGATAT
1 GAAGTGCCCTAGCACTGATAT
7198066 ACTAAAGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
GAAGTGCCCTAGCACTGATATG
Found at i:7198097 original size:24 final size:24
Alignment explanation
Indices: 7198022--7198106 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 24
7198012 CGACTAGTAT
*
7198022 CTGAAGTGCCCTAGCACT-AT--A
1 CTGAAGTGCCTTAGCACTAATACA
* *
7198043 -TGGAAGTGCCTTAGCACTGATATA
1 CT-GAAGTGCCTTAGCACTAATACA
* *
7198067 CTAAAGTTCCTTAGCACTAATACA
1 CTGAAGTGCCTTAGCACTAATACA
* *
7198091 TTGAAGTGCCATAGCA
1 CTGAAGTGCCTTAGCA
7198107 TTGAACTAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
20 1 0.02
21 15 0.30
22 2 0.04
24 31 0.62
25 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (24 bp):
CTGAAGTGCCTTAGCACTAATACA
Found at i:7199111 original size:21 final size:20
Alignment explanation
Indices: 7199061--7199113 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
7199051 CTGATATGAG
7199061 TATCGATACTACAAGAACAA
1 TATCGATACTACAAGAACAA
* *
7199081 TATCAATACTCACAAGAACAT
1 TATCGATACT-ACAAGAACAA
*
7199102 TATCGCTACTAC
1 TATCGATACTAC
7199114 GACCTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.25
Consensus pattern (20 bp):
TATCGATACTACAAGAACAA
Found at i:7205764 original size:18 final size:18
Alignment explanation
Indices: 7205705--7205766 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 18
7205695 ATTCTCCAAT
7205705 AAATAAATAAATAA-AT-A
1 AAATAAA-AAATAATATGA
7205722 AAATAGAGAAAATAACTATTG-
1 AAATA-A-AAAATAA-TA-TGA
7205743 -AATAAAAAATAATATGA
1 AAATAAAAAATAATATGA
7205760 AAATAAA
1 AAATAAA
7205767 TAAAGTAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
16 2 0.05
17 7 0.19
18 20 0.54
19 2 0.05
20 5 0.14
21 1 0.03
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (18 bp):
AAATAAAAAATAATATGA
Found at i:7207417 original size:20 final size:20
Alignment explanation
Indices: 7207394--7207443 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
7207384 AATAGGTTTT
*
7207394 GGATCGATCATTCAGGTAAG
1 GGATCGATCATTAAGGTAAG
* *
7207414 GGATCGATCCGTTAAGTTAAG
1 GGATCGAT-CATTAAGGTAAG
7207435 GGATCGATC
1 GGATCGATC
7207444 CATTTTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (20 bp):
GGATCGATCATTAAGGTAAG
Found at i:7213042 original size:26 final size:25
Alignment explanation
Indices: 7212988--7213042 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
7212978 TGTAATATAG
*
7212988 TATA-TAATAATAACTTATGTCTCA
1 TATAGTAATAATAACTTATGTATCA
*
7213012 CATAGTAATGAATAACTTAT-TATCA
1 TATAGTAAT-AATAACTTATGTATCA
7213037 TTATAG
1 -TATAG
7213043 CTATAGATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 3 0.12
25 8 0.32
26 14 0.56
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (25 bp):
TATAGTAATAATAACTTATGTATCA
Found at i:7220276 original size:6 final size:7
Alignment explanation
Indices: 7220267--7220308 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 7
7220257 GAAAATTAAA
7220267 ATAAT-T
1 ATAATAT
7220273 ATAATAT
1 ATAATAT
7220280 ATATATAT
1 ATA-ATAT
7220288 ATATATAT
1 ATA-ATAT
7220296 ATATATAT
1 ATA-ATAT
7220304 ATAAT
1 ATAAT
7220309 GAATGTTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 5 0.15
7 6 0.18
8 23 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATAATAT
Found at i:7220283 original size:2 final size:2
Alignment explanation
Indices: 7220272--7220306 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7220262 TTAAAATAAT
7220272 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7220307 ATGAATGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7220325 original size:20 final size:20
Alignment explanation
Indices: 7220293--7220343 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7220283 TATATATATA
7220293 TATATATATATATAATGAATG
1 TATATATA-ATATAATGAATG
* *
7220314 T-TATGATAATATGATGCATG
1 TATAT-ATAATATAATGAATG
7220334 TATATATAAT
1 TATATATAAT
7220344 GTACATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (20 bp):
TATATATAATATAATGAATG
Found at i:7220962 original size:2 final size:2
Alignment explanation
Indices: 7220950--7221015 Score: 50
Period size: 2 Copynumber: 34.0 Consensus size: 2
7220940 ATTAATACAT
* * *
7220950 TA TA AA TA TA TA TA TA TA TA T- TA -A TA TA -A AA GTA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
*
7220990 TA TA -A GTA TA TA AA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA
7221016 CACTTATTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
1 4 0.08
2 45 0.88
3 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (2 bp):
TA
Found at i:7220977 original size:24 final size:23
Alignment explanation
Indices: 7220950--7221039 Score: 92
Period size: 24 Copynumber: 3.8 Consensus size: 23
7220940 ATTAATACAT
7220950 TATAAATATATATATATATATTAA
1 TATAAATATATATATATATATT-A
* *
7220974 TATAAA-AGTATATACATATAAGTA
1 TATAAATA-TATATATATAT-ATTA
*
7220998 TATAAATATATATATATACACTTA
1 TATAAATATATATATATATA-TTA
* *
7221022 TTTAAATATACATATATA
1 TATAAATATATATATATA
7221040 AAAAAAGTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
23 2 0.04
24 50 0.91
25 3 0.05
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.41
Consensus pattern (23 bp):
TATAAATATATATATATATATTA
Found at i:7221110 original size:14 final size:14
Alignment explanation
Indices: 7220950--7221214 Score: 67
Period size: 14 Copynumber: 19.8 Consensus size: 14
7220940 ATTAATACAT
7220950 TATAAA-TATAT-A
1 TATAAAGTATATAA
*
7220962 TATATA-TAT-TAA
1 TATAAAGTATATAA
7220974 TATAAAAGTATATACA
1 TAT-AAAGTATATA-A
7220990 TAT-AAGTATATAA
1 TATAAAGTATATAA
7221003 -AT--A-TATAT-A
1 TATAAAGTATATAA
** *
7221012 TATACACTTATTTAAA
1 TATA-AAGTATAT-AA
*
7221028 TATACA-TATATAA
1 TATAAAGTATATAA
* *
7221041 -AAAAAGTATA-AG
1 TATAAAGTATATAA
*
7221053 TAT-AAGTTTAT-A
1 TATAAAGTATATAA
*
7221065 TATAAAGTGTA-AA
1 TATAAAGTATATAA
* *
7221078 CTATGAAGTGTA-AA
1 -TATAAAGTATATAA
7221092 CTATAAAGTATATAA
1 -TATAAAGTATATAA
* *
7221107 TAT-ATGTATATAT
1 TATAAAGTATATAA
*
7221120 TATAAGGTATATATA
1 TATAAAGTATATA-A
*
7221135 CTTTAAAGTATA-AA
1 -TATAAAGTATATAA
* *
7221149 GTGTATA-TATAT-A
1 -TATAAAGTATATAA
*
7221162 TATATA-TATAT-A
1 TATAAAGTATATAA
7221174 TATAAAGTATA-AGCA
1 TATAAAGTATATA--A
7221189 TATTATAAGTATAT-A
1 TA-TA-AAGTATATAA
*
7221204 TATAAACTATA
1 TATAAAGTATA
7221215 AAGTATATAT
Statistics
Matches: 194, Mismatches: 29, Indels: 59
0.69 0.10 0.21
Matches are distributed among these distances:
9 1 0.01
10 7 0.04
11 2 0.01
12 43 0.22
13 43 0.22
14 60 0.31
15 11 0.06
16 20 0.10
17 7 0.04
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (14 bp):
TATAAAGTATATAA
Found at i:7221145 original size:16 final size:16
Alignment explanation
Indices: 7221143--7221225 Score: 55
Period size: 20 Copynumber: 4.9 Consensus size: 16
7221133 TACTTTAAAG
*
7221143 TATAAAGTGTATATA-
1 TATAAAGTATATATAT
*
7221158 TATATA-TATATATAT
1 TATAAAGTATATATAT
*
7221173 ATATAAAGTATAAGCATAT
1 -TATAAAGTAT-A-TATAT
7221192 TAT-AAGTATATATAT
1 TATAAAGTATATATAT
7221207 AAACTATAAAGTATATATA
1 ----TATAAAGTATATATA
7221226 CTTTATACTA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
14 7 0.13
15 9 0.17
16 6 0.11
17 9 0.17
18 4 0.08
19 7 0.13
20 11 0.21
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (16 bp):
TATAAAGTATATATAT
Found at i:7221160 original size:43 final size:37
Alignment explanation
Indices: 7221138--7221365 Score: 111
Period size: 37 Copynumber: 6.2 Consensus size: 37
7221128 ATATATACTT
*
7221138 TAAAGTATAAAGTGTATATATATATATATATATATATA
1 TAAAGTATAAA-TATATATATATATATATATATATATA
** *
7221176 TAAAGTATAAGCATAT-TATA-AGTATATATATAAACTA
1 TAAAGTATAAATATATATATATA-TATATATATATA-TA
* * *
7221213 TAAAGTAT--ATATACTTTATACTA-AAACTTTATATATA
1 TAAAGTATAAATATA-TATATA-TATATA-TATATATATA
* * *
7221250 T-TA-TAT-ACT-TATATATATATATATATAAAGTATA
1 TAAAGTATAAATATATATATATATATATATATA-TATA
* * ** *
7221284 TAAAGTATAATTATAAAGGCTAAAGTATATA-AGTATATA
1 TAAAGTATAAATATATA-TATATA-TATATATA-TATATA
* *
7221323 TACA-TATAAATA-ATAAGTGTATATATATATATATATA
1 TAAAGTATAAATATAT-A-TATATATATATATATATATA
7221360 TAAAGT
1 TAAAGT
7221366 TTTAGTATAA
Statistics
Matches: 141, Mismatches: 29, Indels: 40
0.67 0.14 0.19
Matches are distributed among these distances:
33 6 0.04
34 12 0.09
35 10 0.07
36 21 0.15
37 40 0.28
38 33 0.23
39 12 0.09
40 7 0.05
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.40
Consensus pattern (37 bp):
TAAAGTATAAATATATATATATATATATATATATATA
Found at i:7221221 original size:91 final size:88
Alignment explanation
Indices: 7221088--7221361 Score: 243
Period size: 91 Copynumber: 3.0 Consensus size: 88
7221078 CTATGAAGTG
* * * *
7221088 TAAACTATAAAG--TATATAA-TATATGTATATATTATAAGGTATATATACTTTAAAGTATAAAG
1 TAAA-TATAAAGCATATATAAGTATATATATAAACTATAAAGTATATATACTTTAAA-TA-AAAG
7221150 TGTATATATATATATATATATATATA
63 TGTATATATATATATATATATATATA
* *
7221176 TAAAGTAT-AAGCATATTATAAGTATATATATAAACTATAAAGTATATATACTTTATACTAAAAC
1 TAAA-TATAAAGCATA-TATAAGTATATATATAAACTATAAAGTATATATACTTTA-AATAAAAG
*
7221240 TTTATATATATTATATACTTATATATATA
63 TGTATATATA-TATATA--TATATATATA
* * * *
7221269 TATATATAAAGTATATA-AAGTATAATTATAAAGGCTAAAGTATATAAGTATATATACATATAAA
1 TAAATATAAAGCATATATAAGTAT-A-TAT--A---TAAACTATA-AAGTATATATAC-TTTAAA
7221333 TAATAAGTGTATATATATATATATATATA
57 TAA-AAGTGTATATATATATATATATATA
7221362 AAGTTTTAGT
Statistics
Matches: 152, Mismatches: 15, Indels: 29
0.78 0.08 0.15
Matches are distributed among these distances:
87 3 0.02
88 7 0.05
89 2 0.01
90 17 0.11
91 43 0.28
92 7 0.05
93 22 0.14
95 1 0.01
97 6 0.04
98 8 0.05
99 22 0.14
100 14 0.09
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.41
Consensus pattern (88 bp):
TAAATATAAAGCATATATAAGTATATATATAAACTATAAAGTATATATACTTTAAATAAAAGTGT
ATATATATATATATATATATATA
Found at i:7221285 original size:2 final size:2
Alignment explanation
Indices: 7221152--7221276 Score: 64
Period size: 2 Copynumber: 61.0 Consensus size: 2
7221142 GTATAAAGTG
* *
7221152 TA TA TA TA TA TA TA TA TA TA TA TA TA AA GTA TA -A GCA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* * *
7221194 TA -A GTA TA TA TA TA AA CTA TA AA GTA TA TA TA CTT TA TA CTA -A
1 TA TA -TA TA TA TA TA TA -TA TA TA -TA TA TA TA -TA TA TA -TA TA
* *
7221237 AA CTT TA TA TA TA T- TA TA TA CT- TA TA TA TA TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
7221277 AAGTATATAA
Statistics
Matches: 96, Mismatches: 12, Indels: 30
0.70 0.09 0.22
Matches are distributed among these distances:
1 6 0.06
2 81 0.84
3 9 0.09
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (2 bp):
TA
Found at i:7221319 original size:8 final size:8
Alignment explanation
Indices: 7221306--7221501 Score: 83
Period size: 8 Copynumber: 25.9 Consensus size: 8
7221296 ATAAAGGCTA
7221306 AAGTATAT
1 AAGTATAT
7221314 AAGTATAT
1 AAGTATAT
*
7221322 ATA-CATAT
1 A-AGTATAT
*
7221330 AAATA-AT
1 AAGTATAT
*
7221337 AAGTGTAT
1 AAGTATAT
7221345 ATA-TATAT
1 A-AGTATAT
7221353 ATA-TATAT
1 A-AGTATAT
7221361 AAAGT-T-T
1 -AAGTATAT
* *
7221368 TAGTATAA
1 AAGTATAT
7221376 AATGTATAT
1 AA-GTATAT
*
7221385 AGGTATAT
1 AAGTATAT
7221393 AA-TAATAT
1 AAGT-ATAT
7221401 AAAGTATAT
1 -AAGTATAT
7221410 AAGTAT-T
1 AAGTATAT
7221417 AAGTA-A-
1 AAGTATAT
7221423 AAGTATAT
1 AAGTATAT
7221431 AAGTAT-T
1 AAGTATAT
*
7221438 AAATATA-
1 AAGTATAT
7221445 AAG--TAT
1 AAGTATAT
7221451 AAG--TAT
1 AAGTATAT
7221457 AA--ATAT
1 AAGTATAT
7221463 AAGTATAT
1 AAGTATAT
*
7221471 TA-TATAT
1 AAGTATAT
7221478 ATA-TATAT
1 A-AGTATAT
7221486 ATA-TATAT
1 A-AGTATAT
7221494 AAAGTATA
1 -AAGTATA
7221502 ATTATAAAGA
Statistics
Matches: 150, Mismatches: 15, Indels: 45
0.71 0.07 0.21
Matches are distributed among these distances:
5 2 0.01
6 21 0.14
7 29 0.19
8 76 0.51
9 21 0.14
10 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.09, T:0.39
Consensus pattern (8 bp):
AAGTATAT
Found at i:7221354 original size:99 final size:95
Alignment explanation
Indices: 7221152--7221361 Score: 228
Period size: 99 Copynumber: 2.1 Consensus size: 95
7221142 GTATAAAGTG
* * *
7221152 TATATATATATATATATATATATATAAAGTATAAGCATATTATAAGTATATATATAAACTATAAA
1 TATATATATATATATATATATATATAAAGTATAA-CATAGTATAAGTATAAAGATAAACTATAAA
* * *
7221217 GTATATATACTTTATACTAAAACTTTATATA
65 GTATATATACTATATAATAAAACTGTATATA
* * *
7221248 TATTATATACTTATATATATATATATATAAAGTATATA-A-AGTATAATTATAAAGGCTAAAGTA
1 TA-TATATA--TATATATATATATATATAAAGTATA-ACATAGTATAAGTATAAA-GATAAACTA
*
7221311 TATAAGTATATATAC-ATATAAATAATAAGTGTATATA
61 TA-AAGTATATATACTATAT-AATAA-AACTGTATATA
7221348 TATATATATATATA
1 TATATATATATATA
7221362 AAGTTTTAGT
Statistics
Matches: 96, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
96 2 0.02
97 23 0.24
98 12 0.12
99 47 0.49
100 12 0.12
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.41
Consensus pattern (95 bp):
TATATATATATATATATATATATATAAAGTATAACATAGTATAAGTATAAAGATAAACTATAAAG
TATATATACTATATAATAAAACTGTATATA
Found at i:7221428 original size:13 final size:14
Alignment explanation
Indices: 7221410--7221470 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 14
7221400 TAAAGTATAT
7221410 AAGTAT-TAAGTAA
1 AAGTATATAAGTAA
7221423 AAGTATATAAGTATTA
1 AAGTATATAAGTA--A
*
7221439 AA-TATA-AAGTAT
1 AAGTATATAAGTAA
*
7221451 AAGTATA-AA-TAT
1 AAGTATATAAGTAA
7221463 AAGTATAT
1 AAGTATAT
7221471 TATATATATA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
12 12 0.29
13 12 0.29
14 11 0.26
15 4 0.10
16 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (14 bp):
AAGTATATAAGTAA
Found at i:7221446 original size:6 final size:6
Alignment explanation
Indices: 7221427--7221509 Score: 58
Period size: 6 Copynumber: 13.2 Consensus size: 6
7221417 AAGTAAAAGT
* * * * *
7221427 ATATAA GTATTAA ATATAA AGTATAA GTATAA ATATAA GTATATT ATATAT
1 ATATAA ATA-TAA ATATAA A-TATAA ATATAA ATATAA ATATA-A ATATAA
* * *
7221478 ATATAT ATATAT ATATAA AGTATAA TTATAA A
1 ATATAA ATATAA ATATAA A-TATAA ATATAA A
7221510 GACTAAATTA
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
6 44 0.70
7 19 0.30
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (6 bp):
ATATAA
Found at i:7221448 original size:28 final size:30
Alignment explanation
Indices: 7221397--7221457 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
7221387 GTATATAATA
* *
7221397 ATATAAAGTATATAAGTATTAAGTAAAAGT
1 ATATAAAGTATATAAATATAAAGTAAAAGT
*
7221427 ATAT-AAGTAT-TAAATATAAAGTATAAGT
1 ATATAAAGTATATAAATATAAAGTAAAAGT
7221455 ATA
1 ATA
7221458 AATATAAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 18 0.64
29 6 0.21
30 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (30 bp):
ATATAAAGTATATAAATATAAAGTAAAAGT
Found at i:7221478 original size:2 final size:2
Alignment explanation
Indices: 7221466--7221494 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7221456 TAAATATAAG
7221466 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7221495 AAGTATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7222786 original size:25 final size:23
Alignment explanation
Indices: 7222739--7222858 Score: 97
Period size: 25 Copynumber: 5.2 Consensus size: 23
7222729 CTAAAGACTA
*
7222739 AAGTATATAAATATAAAGTATATAT
1 AAGTACATAAATATAAA--ATATAT
*
7222764 ACGTACATAATAATATAAAATATAT
1 AAGTACAT-A-AATATAAAATATAT
* *
7222789 AAGTATATAAATATAAAGTATAT
1 AAGTACATAAATATAAAATATAT
*
7222812 -AG--CATTAAATAT-AAGTATAT
1 AAGTACA-TAAATATAAAATATAT
* *
7222832 AAGTA-TTAAATATAAAGTATAT
1 AAGTACATAAATATAAAATATAT
7222854 AAGTA
1 AAGTA
7222859 TATATATAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
20 9 0.11
21 16 0.20
22 15 0.19
23 13 0.16
24 1 0.01
25 18 0.22
26 1 0.01
27 8 0.10
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (23 bp):
AAGTACATAAATATAAAATATAT
Found at i:7222798 original size:50 final size:45
Alignment explanation
Indices: 7222739--7222888 Score: 150
Period size: 43 Copynumber: 3.3 Consensus size: 45
7222729 CTAAAGACTA
7222739 AAGTATATAAATATAAAGTATATATACGTACATAATAATATAAAATATAT
1 AAGTATATAAATATAAAGTATATATA-G--CATAA-AATAT-AAATATAT
* *
7222789 AAGTATATAAATATAAAG--TATATAGCATTAAATATAAGTATAT
1 AAGTATATAAATATAAAGTATATATAGCATAAAATATAAATATAT
* *
7222832 AAGTAT-TAAATATAAAGTATATA-AGTAT-ATATATAAACTATA-
1 AAGTATATAAATATAAAGTATATATAGCATAAAATATAAA-TATAT
* *
7222874 AAGTGTATATATATA
1 AAGTATATAAATATA
7222889 TATATACAGT
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
42 23 0.26
43 28 0.31
44 9 0.10
45 4 0.04
47 1 0.01
48 6 0.07
50 18 0.20
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (45 bp):
AAGTATATAAATATAAAGTATATATAGCATAAAATATAAATATAT
Found at i:7222820 original size:21 final size:22
Alignment explanation
Indices: 7222739--7222877 Score: 142
Period size: 21 Copynumber: 6.2 Consensus size: 22
7222729 CTAAAGACTA
7222739 AAGTATATAAATATAAAGTATAT
1 AAGTAT-TAAATATAAAGTATAT
* *
7222762 ATACGTACATAATAATATAAAATATAT
1 A-A-GT--ATTA-AATATAAAGTATAT
7222789 AAGTATATAAATATAAAGTATAT
1 AAGTAT-TAAATATAAAGTATAT
*
7222812 -AGCATTAAATAT-AAGTATAT
1 AAGTATTAAATATAAAGTATAT
7222832 AAGTATTAAATATAAAGTATAT
1 AAGTATTAAATATAAAGTATAT
* *
7222854 AAGTA-TATATATAAACTATA-
1 AAGTATTAAATATAAAGTATAT
7222874 AAGT
1 AAGT
7222878 GTATATATAT
Statistics
Matches: 100, Mismatches: 8, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
20 12 0.12
21 31 0.31
22 17 0.17
23 16 0.16
24 2 0.02
25 4 0.04
26 2 0.02
27 16 0.16
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.35
Consensus pattern (22 bp):
AAGTATTAAATATAAAGTATAT
Found at i:7222824 original size:35 final size:36
Alignment explanation
Indices: 7222785--7222882 Score: 105
Period size: 35 Copynumber: 2.8 Consensus size: 36
7222775 AATATAAAAT
7222785 ATATAAGTATATAAATATAAAGTATATAGCAT-TAA
1 ATATAAGTATATAAATATAAAGTATATAGCATATAA
* * *
7222820 ATATAAGTATATAAGTATTAAA-TATAAAGTATATAA
1 ATATAAGTATATAAATA-TAAAGTATATAGCATATAA
* *
7222856 GTAT-A-TATATAAACTATAAAGTGTATA
1 ATATAAGTATATAAA-TATAAAGTATATA
7222883 TATATATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
34 11 0.21
35 31 0.60
36 10 0.19
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATAAGTATATAAATATAAAGTATATAGCATATAA
Found at i:7222848 original size:42 final size:47
Alignment explanation
Indices: 7222739--7222854 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 47
7222729 CTAAAGACTA
7222739 AAGTATATAAATATAAAGTATATATACGTACATAATAATATAAAATATAT
1 AAGTATATAAATATAAAG--TATATACG-ACATAATAATATAAAATATAT
* *
7222789 AAGTATATAAATATAAAGTATATA-G-CATTA-AATAT-AAGTATAT
1 AAGTATATAAATATAAAGTATATACGACATAATAATATAAAATATAT
7222832 AAGTAT-TAAATATAAAGTATATA
1 AAGTATATAAATATAAAGTATATA
7222855 AGTATATATA
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
42 17 0.27
43 13 0.20
44 5 0.08
45 4 0.06
47 1 0.02
48 6 0.09
50 18 0.28
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (47 bp):
AAGTATATAAATATAAAGTATATACGACATAATAATATAAAATATAT
Found at i:7222852 original size:28 final size:26
Alignment explanation
Indices: 7222817--7222892 Score: 68
Period size: 26 Copynumber: 2.8 Consensus size: 26
7222807 TATATAGCAT
7222817 TAAA-TATAAGTATATAAGTATTAAA-TA
1 TAAAGTATAAGTATAT-A-TA-TAAACTA
7222844 TAAAGTATATAAGTATATATATAAACTA
1 TAAAG--TATAAGTATATATATAAACTA
*
7222872 TAAAGTGTATA-TATATATATA
1 TAAAGTATA-AGTATATATATA
7222893 TACAGTTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
26 13 0.30
27 9 0.21
28 9 0.21
29 1 0.02
30 11 0.26
ACGTcount: A:0.53, C:0.01, G:0.08, T:0.38
Consensus pattern (26 bp):
TAAAGTATAAGTATATATATAAACTA
Found at i:7222882 original size:20 final size:21
Alignment explanation
Indices: 7222776--7222951 Score: 105
Period size: 22 Copynumber: 8.2 Consensus size: 21
7222766 GTACATAATA
*
7222776 ATATAAAATATATAAGTATAT
1 ATATAAACTATATAAGTATAT
* *
7222797 AAATATAAAGTATAT-AGCAT-T
1 --ATATAAACTATATAAGTATAT
* * *
7222818 AAATATAAGTATATAAGTATTAA
1 ATATA-AACTATATAAGTA-TAT
*
7222841 ATATAAAGTATATAAGTATAT
1 ATATAAACTATATAAGTATAT
*
7222862 ATATAAACTATA-AAGTGTAT
1 ATATAAACTATATAAGTATAT
* *
7222882 ATATATA-TATATACAGT-TTT
1 ATATAAACTATATA-AGTATAT
*
7222902 AGTATAAACTATATATA-CATAT
1 A-TATAAACTATATA-AGTATAT
*
7222924 ATAATAATA-TAAAGTAAGTATAT
1 AT-ATAA-ACTATA-TAAGTATAT
7222947 ATATA
1 ATATA
7222952 TACACGTATA
Statistics
Matches: 123, Mismatches: 17, Indels: 27
0.74 0.10 0.16
Matches are distributed among these distances:
19 8 0.07
20 25 0.20
21 26 0.21
22 39 0.32
23 25 0.20
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (21 bp):
ATATAAACTATATAAGTATAT
Found at i:7222893 original size:28 final size:27
Alignment explanation
Indices: 7222653--7222894 Score: 105
Period size: 28 Copynumber: 8.9 Consensus size: 27
7222643 TATATAAGTG
*
7222653 TATAAAGTATATATACATATA-AAATACAA
1 TATAAAGTATATA-A-ATATATATATA-AA
* *
7222682 GTAT-AAGTATAT-ATTATATATATATA
1 -TATAAAGTATATAAATATATATATAAA
* * *
7222708 TATAAAG--TATAATTATAAAGACTAAA
1 TATAAAGTATATAAATATATATA-TAAA
* *
7222734 GACTAAAGTATATAAATATA-A-AGTATA
1 TA-TAAAGTATATAAATATATATA-TAAA
* *
7222761 TAT-ACGTACAT-AATA-ATATA-AAA
1 TATAAAGTATATAAATATATATATAAA
* *
7222784 TATATAAGTATATAAATATAAAGTATATAG
1 TATA-AAGTATATAAATATATA-TATA-AA
* * *
7222814 CATTAA--ATATAAGTATATAAGTATTAAA
1 TATAAAGTATATAAATATAT-A-TA-TAAA
*
7222842 TATAAAGTATATAAGTATATATATAAA
1 TATAAAGTATATAAATATATATATAAA
* *
7222869 CTATAAAGTGTATATATATATATATA
1 -TATAAAGTATATAAATATATATATA
7222895 CAGTTTTAGT
Statistics
Matches: 163, Mismatches: 28, Indels: 44
0.69 0.12 0.19
Matches are distributed among these distances:
23 6 0.04
24 8 0.05
25 24 0.15
26 17 0.10
27 31 0.19
28 36 0.22
29 23 0.14
30 18 0.11
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (27 bp):
TATAAAGTATATAAATATATATATAAA
Found at i:7223077 original size:22 final size:21
Alignment explanation
Indices: 7222993--7223079 Score: 84
Period size: 22 Copynumber: 4.0 Consensus size: 21
7222983 ATACTTTAGT
* *
7222993 CTTTATAATTACACTTTATATA
1 CTTTATATTTATAC-TTATATA
7223015 CTTTATATTTAATACTTATATA
1 CTTTATATTT-ATACTTATATA
* *
7223037 CTTTATATAATATGCTTATATA
1 CTTTATAT-TTATACTTATATA
* *
7223059 CTTTAGTCTTTATAATTATAT
1 CTTTA-TATTTATACTTATAT
7223080 TATATATACA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
22 48 0.89
23 6 0.11
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.53
Consensus pattern (21 bp):
CTTTATATTTATACTTATATA
Found at i:7223123 original size:73 final size:74
Alignment explanation
Indices: 7222969--7223276 Score: 254
Period size: 73 Copynumber: 4.1 Consensus size: 74
7222959 ATATAATTTA
* *
7222969 TATTATATA--CTTATATACTTTAGTCTTTATAATTACACTT-TATATAC-T-T--TATATTTAA
1 TATTATATATGCTTATATACTTTAGTCTTTATAATTATA-TTATATATACATATAATATACTT-A
7223027 TACTTATATACT
64 TACTTATATA-T
7223039 T-TATATAATATGCTTATATACTTTAGTCTTTATAATTATATTATATATACATATAATATACTTA
1 TAT-TAT-ATATGCTTATATACTTTAGTCTTTATAATTATATTATATATACATATAATATACTTA
7223103 TACTT-TATAT
64 TACTTATATAT
* * * *
7223113 TATTATATATG-TAAATATACTTTA-TAC--TAAAACTTTATATATATACATACATAAATACTTA
1 TATTATATATGCT-TATATACTTTAGT-CTTTATAA--TTATAT-TATATATACAT--ATA-ATA
7223174 TACTTTATA-TATATATAT
58 TAC-TTATACT-TATATAT
* * *
7223192 ATATAATTTATATACTTTTATACTTTAGTCTTTATAATTATATTATATAT--ATATAATATACTT
1 -TAT--TATATATGCTTATATACTTTAGTCTTTATAATTATATTATATATACATATAATATACTT
7223255 ATACTT-TATAT
63 ATACTTATATAT
7223266 TATTATATATG
1 TATTATATATG
7223277 TGTGTGTGTA
Statistics
Matches: 194, Mismatches: 15, Indels: 57
0.73 0.06 0.21
Matches are distributed among these distances:
69 1 0.01
70 4 0.02
71 13 0.07
72 4 0.02
73 59 0.30
74 21 0.11
75 12 0.06
76 15 0.08
77 15 0.08
78 6 0.03
79 7 0.04
80 3 0.02
81 6 0.03
82 22 0.11
83 2 0.01
84 4 0.02
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (74 bp):
TATTATATATGCTTATATACTTTAGTCTTTATAATTATATTATATATACATATAATATACTTATA
CTTATATAT
Found at i:7223212 original size:31 final size:30
Alignment explanation
Indices: 7223144--7223213 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
7223134 TTATACTAAA
7223144 ACTTTATATATATACATACATAAATACTTAT
1 ACTTTATATATATACATACATAAATAC-TAT
* * *
7223175 ACTTTATATATATATATATATAATTTA-TAT
1 ACTTTATATATATACATACATAA-ATACTAT
7223205 ACTTT-TATA
1 ACTTTATATA
7223214 CTTTAGTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.11
30 8 0.23
31 21 0.60
32 2 0.06
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (30 bp):
ACTTTATATATATACATACATAAATACTAT
Found at i:7223316 original size:28 final size:27
Alignment explanation
Indices: 7223146--7223367 Score: 127
Period size: 28 Copynumber: 8.0 Consensus size: 27
7223136 ATACTAAAAC
* *
7223146 TTTATATATATACATACATAAATACTTATA
1 TTTATATATATATATATAT-AAT--TTATA
7223176 CTTTATATATATATATATATAATTTATA
1 -TTTATATATATATATATATAATTTATA
* * * *
7223204 TACTTTTATACTTTAGTCTTTATAA-TTATA
1 T--TTATATA-TATA-TATATATAATTTATA
*
7223234 -TTATATATATATA-ATAT-ACTTATA
1 TTTATATATATATATATATAATTTATA
* * * *
7223258 CTTTATAT-TAT-TATATAT-GTGTGTG
1 -TTTATATATATATATATATAATTTATA
* *
7223283 TGTATATATATATATATGTAATTTATA
1 TTTATATATATATATATATAATTTATA
*
7223310 GTTTATATATATACT-TATATACTTTATA
1 -TTTATATATATA-TATATATAATTTATA
* *
7223338 TTTAAACTATATAAACTATATAATTTATA
1 TTTATA-TATATATA-TATATAATTTATA
7223367 T
1 T
7223368 ATAGTTCAAT
Statistics
Matches: 148, Mismatches: 27, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
23 1 0.01
24 16 0.11
25 13 0.09
26 15 0.10
27 15 0.10
28 33 0.22
29 20 0.14
30 11 0.07
31 24 0.16
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (27 bp):
TTTATATATATATATATATAATTTATA
Done.