Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9952466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 43
Found at i:8003714 original size:32 final size:34
Alignment explanation
Indices: 8003661--8003725 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 34
8003651 TTTAAATAGG
8003661 TTTTAGTATTTTAATTATGTTTTAGG-ATATTAT
1 TTTTAGTATTTTAATTATGTTTTAGGTATATTAT
*
8003694 TTTTA-TA-TTTAATCTTTGTTTTAGGTATATTA
1 TTTTAGTATTTTAAT-TATGTTTTAGGTATATTA
8003726 GTTTAAATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 6 0.21
32 12 0.41
33 11 0.38
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.62
Consensus pattern (34 bp):
TTTTAGTATTTTAATTATGTTTTAGGTATATTAT
Found at i:8003727 original size:76 final size:77
Alignment explanation
Indices: 8003600--8003753 Score: 222
Period size: 76 Copynumber: 2.0 Consensus size: 77
8003590 AATTAAACTC
* * *
8003600 ATGTTTTAGGATAATATTTTAAATATTTTATCTTTGTTTTATGAATTTTAGTTTAAATAGGTTTT
1 ATGTTTTAGGATAATATTTTAAATATTTAATCTTTGTTTTAGGAATATTAGTTTAAATA-GTTTT
8003665 -AGTATTTTAATT
65 AAGTATTTTAATT
* * *
8003677 ATGTTTTAGGATATTATTTT-TATATTTAATCTTTGTTTTAGGTATATTAGTTTAAATAGTTTTA
1 ATGTTTTAGGATAATATTTTAAATATTTAATCTTTGTTTTAGGAATATTAGTTTAAATAGTTTTA
*
8003741 AGTGTTTTAATT
66 AGTATTTTAATT
8003753 A
1 A
8003754 GGATTTCAGA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 5 0.07
76 45 0.65
77 19 0.28
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.57
Consensus pattern (77 bp):
ATGTTTTAGGATAATATTTTAAATATTTAATCTTTGTTTTAGGAATATTAGTTTAAATAGTTTTA
AGTATTTTAATT
Found at i:8004363 original size:17 final size:17
Alignment explanation
Indices: 8004338--8004371 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8004328 CTTTATCCAA
*
8004338 ATTTATTTATTTTATTT
1 ATTTATTTATTTAATTT
*
8004355 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
8004372 TCATCTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:8005379 original size:11 final size:11
Alignment explanation
Indices: 8005363--8005393 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8005353 ATTAGGATAG
*
8005363 TATTTTATTTT
1 TATTTTATTAT
8005374 TATTTTATTAT
1 TATTTTATTAT
8005385 TATTTTATT
1 TATTTTATT
8005394 CATGATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8008010 original size:23 final size:23
Alignment explanation
Indices: 8007977--8008035 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
8007967 ATTTGTTCCG
*
8007977 AAGGACCACATAGGTTTATCCCA
1 AAGGACCACATAGGTTTACCCCA
* * * *
8008000 AATGACCACATAGTTTTGCCCCG
1 AAGGACCACATAGGTTTACCCCA
8008023 AAGGACCACATAG
1 AAGGACCACATAG
8008036 AACCCTCGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (23 bp):
AAGGACCACATAGGTTTACCCCA
Found at i:8011112 original size:11 final size:11
Alignment explanation
Indices: 8011096--8011126 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8011086 ATTAGGATAG
8011096 TATTTTATTAT
1 TATTTTATTAT
*
8011107 TATTTTATTGT
1 TATTTTATTAT
8011118 TATTTTATT
1 TATTTTATT
8011127 CATCATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8012024 original size:22 final size:22
Alignment explanation
Indices: 8011998--8012073 Score: 59
Period size: 21 Copynumber: 3.5 Consensus size: 22
8011988 CACCATAGCT
8011998 CACATAATTTGCACCGAAGTG-C
1 CACATAATTTGCACCGAAG-GAC
**
8012020 CACAT-ATTTGTGCCGAAGGAC
1 CACATAATTTGCACCGAAGGAC
* * *
8012041 CACATAGGTTTGTC-CTGAATGAC
1 CACATA-ATTTG-CACCGAAGGAC
8012064 CACATAATTT
1 CACATAATTT
8012074 TGTCCCGAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 1 0.02
21 17 0.40
22 8 0.19
23 17 0.40
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (22 bp):
CACATAATTTGCACCGAAGGAC
Found at i:8012064 original size:23 final size:23
Alignment explanation
Indices: 8012011--8012092 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 23
8012001 ATAATTTGCA
*
8012011 CCGAAGTG-CCACATA--TTTGTG
1 CCGAA-TGACCACATAGGTTTGTC
*
8012032 CCGAAGGACCACATAGGTTTGTC
1 CCGAATGACCACATAGGTTTGTC
* **
8012055 CTGAATGACCACATAATTTTGTC
1 CCGAATGACCACATAGGTTTGTC
8012078 CCGAATGACCA-ATAG
1 CCGAATGACCACATAG
8012093 AACCCTCGAC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
20 1 0.02
21 12 0.24
22 3 0.06
23 34 0.68
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (23 bp):
CCGAATGACCACATAGGTTTGTC
Found at i:8012233 original size:6 final size:6
Alignment explanation
Indices: 8012224--8012287 Score: 65
Period size: 6 Copynumber: 9.7 Consensus size: 6
8012214 TCACATATGG
8012224 TTCACT TTCACGT ATATCACT TTCACT TTCACT TTCACGT ATATCACT
1 TTCACT TTCAC-T -T-TCACT TTCACT TTCACT TTCAC-T -T-TCACT
*
8012272 TTTACT TTCACT TTCA
1 TTCACT TTCACT TTCA
8012288 TGTATATCCA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
6 34 0.68
7 4 0.08
8 4 0.08
9 8 0.16
ACGTcount: A:0.22, C:0.28, G:0.03, T:0.47
Consensus pattern (6 bp):
TTCACT
Found at i:8012254 original size:27 final size:27
Alignment explanation
Indices: 8012224--8012295 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
8012214 TCACATATGG
8012224 TTCACTTTCACGTATATCACTTTCACT
1 TTCACTTTCACGTATATCACTTTCACT
*
8012251 TTCACTTTCACGTATATCACTTTTACT
1 TTCACTTTCACGTATATCACTTTCACT
*
8012278 TTCACTTTCATGTATATC
1 TTCACTTTCACGTATATC
8012296 CACATAAAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.47
Consensus pattern (27 bp):
TTCACTTTCACGTATATCACTTTCACT
Found at i:8012501 original size:23 final size:23
Alignment explanation
Indices: 8012437--8012515 Score: 108
Period size: 22 Copynumber: 3.5 Consensus size: 23
8012427 TTTACACCGG
8012437 ATGAC-ACATAGGTTTGTCCCGA
1 ATGACAACATAGGTTTGTCCCGA
8012459 ATGACAA-ATAGGTTTGTCCCGA
1 ATGACAACATAGGTTTGTCCCGA
* *
8012481 ATGACAACATAGTTTTATCCCGA
1 ATGACAACATAGGTTTGTCCCGA
* *
8012504 AGGACCACATAG
1 ATGACAACATAG
8012516 AACCCTCGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
22 27 0.53
23 24 0.47
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (23 bp):
ATGACAACATAGGTTTGTCCCGA
Found at i:8016557 original size:19 final size:21
Alignment explanation
Indices: 8016533--8016584 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
8016523 CGGCCAAGAG
*
8016533 CATGTATCTTCA-TT-AAAAC
1 CATGTATTTTCATTTAAAAAC
*
8016552 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAC
8016573 CATGTATTTTCA
1 CATGTATTTTCA
8016585 AAGGGATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 16 0.55
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAC
Found at i:8018382 original size:23 final size:23
Alignment explanation
Indices: 8018331--8018419 Score: 139
Period size: 23 Copynumber: 4.0 Consensus size: 23
8018321 GCTAAAATAA
*
8018331 TTTGTACCGAAGTG-CCACATA--
1 TTTGTCCCGAA-TGACCACATAGT
8018352 TTTGTCCCGAATGACCACATAGT
1 TTTGTCCCGAATGACCACATAGT
8018375 TTTGTCCCGAATGACCACATAGT
1 TTTGTCCCGAATGACCACATAGT
8018398 TTTGTCCCGAATGACCACATAG
1 TTTGTCCCGAATGACCACATAG
8018420 AACCCTCGAC
Statistics
Matches: 64, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
20 2 0.03
21 17 0.27
23 45 0.70
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (23 bp):
TTTGTCCCGAATGACCACATAGT
Found at i:8018580 original size:21 final size:21
Alignment explanation
Indices: 8018573--8018624 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
8018563 TATATCACAT
8018573 TCACTTTCACTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
*
8018594 TCACTTTCCCTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
8018615 TCACTTTCAC
1 TCACTTTCAC
8018625 ATATATCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.33, G:0.04, T:0.42
Consensus pattern (21 bp):
TCACTTTCACTTTCACGTATA
Found at i:8018592 original size:27 final size:27
Alignment explanation
Indices: 8018554--8018609 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8018544 ATTATGGTTT
8018554 ACTTTCACGTATATCACATTCACTTTC
1 ACTTTCACGTATATCACATTCACTTTC
* *
8018581 ACTTTCACGTATATCACTTTCCCTTTC
1 ACTTTCACGTATATCACATTCACTTTC
8018608 AC
1 AC
8018610 GTATATCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.32, G:0.04, T:0.41
Consensus pattern (27 bp):
ACTTTCACGTATATCACATTCACTTTC
Found at i:8018814 original size:23 final size:22
Alignment explanation
Indices: 8018784--8018851 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
8018774 GTGCCACATA
*
8018784 TTTGTCCCGAGGGAGCACATAGT
1 TTTGTCCCGAAGGA-CACATAGT
*
8018807 TTTGTCCCGAATGACAACATAGT
1 TTTGTCCCGAAGGAC-ACATAGT
* *
8018830 TTTTTCCTGAAGGACCACATAG
1 TTTGTCCCGAAGGA-CACATAG
8018852 AACCTTCGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
22 1 0.03
23 36 0.95
24 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
TTTGTCCCGAAGGACACATAGT
Found at i:8021948 original size:11 final size:11
Alignment explanation
Indices: 8021932--8021958 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8021922 GGATAGTATA
8021932 TTATTGTTATT
1 TTATTGTTATT
8021943 TTATTGTTATT
1 TTATTGTTATT
8021954 TTATT
1 TTATT
8021959 CATCATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (11 bp):
TTATTGTTATT
Found at i:8023032 original size:27 final size:27
Alignment explanation
Indices: 8023002--8023053 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
8022992 TCACATATGG
8023002 TTCAATTTCACGTATATCACTTTCACT
1 TTCAATTTCACGTATATCACTTTCACT
*
8023029 TTCACTTTCACGTATATCACTTTCA
1 TTCAATTTCACGTATATCACTTTCA
8023054 TATATATCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.44
Consensus pattern (27 bp):
TTCAATTTCACGTATATCACTTTCACT
Found at i:8023035 original size:12 final size:15
Alignment explanation
Indices: 8023007--8023053 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
8022997 TATGGTTCAA
8023007 TTTCACGTATATCAC
1 TTTCACGTATATCAC
8023022 TTTCAC-T-T-TCAC
1 TTTCACGTATATCAC
8023034 TTTCACGTATATCAC
1 TTTCACGTATATCAC
8023049 TTTCA
1 TTTCA
8023054 TATATATCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 10 0.34
13 2 0.07
14 2 0.07
15 15 0.52
ACGTcount: A:0.23, C:0.28, G:0.04, T:0.45
Consensus pattern (15 bp):
TTTCACGTATATCAC
Found at i:8027316 original size:23 final size:23
Alignment explanation
Indices: 8027287--8027348 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
8027277 ATATTTTTTT
8027287 CCGAATGACCACATAGGTTTGTC
1 CCGAATGACCACATAGGTTTGTC
*
8027310 CCGAATGACCACATAGTTTTGTC
1 CCGAATGACCACATAGGTTTGTC
*
8027333 CTGAATGACCACATAG
1 CCGAATGACCACATAG
8027349 AACCCTCGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (23 bp):
CCGAATGACCACATAGGTTTGTC
Found at i:8027504 original size:21 final size:21
Alignment explanation
Indices: 8027502--8027552 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8027492 TATATCACTT
8027502 TCACTTTCACTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
*
8027523 TCACTATCACTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
8027544 TCACTTTCA
1 TCACTTTCA
8027553 TATATATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.04, T:0.41
Consensus pattern (21 bp):
TCACTTTCACTTTCACGTATA
Found at i:8027505 original size:6 final size:6
Alignment explanation
Indices: 8027496--8027552 Score: 51
Period size: 6 Copynumber: 8.5 Consensus size: 6
8027486 TTCACGTATA
*
8027496 TCACTT TCACTT TCACTT TCACGTAT ATCACTA TCACTT TCACGTAT ATCACTT
1 TCACTT TCACTT TCACTT TCAC-T-T -TCACTT TCACTT TCAC-T-T -TCACTT
8027550 TCA
1 TCA
8027553 TATATATCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 28 0.65
7 3 0.07
8 4 0.09
9 8 0.19
ACGTcount: A:0.25, C:0.30, G:0.04, T:0.42
Consensus pattern (6 bp):
TCACTT
Found at i:8027538 original size:27 final size:27
Alignment explanation
Indices: 8027480--8027538 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
8027470 TCACATATGG
* *
8027480 TTCAATTTCACGTATATCACTTTCACT
1 TTCACTTTCACGTATATCACTATCACT
8027507 TTCACTTTCACGTATATCACTATCACT
1 TTCACTTTCACGTATATCACTATCACT
8027534 TTCAC
1 TTCAC
8027539 GTATATCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.29, G:0.03, T:0.42
Consensus pattern (27 bp):
TTCACTTTCACGTATATCACTATCACT
Found at i:8027558 original size:15 final size:15
Alignment explanation
Indices: 8027527--8027560 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8027517 CGTATATCAC
*
8027527 TATCACTTTCACGTA
1 TATCACTTTCACATA
*
8027542 TATCACTTTCATATA
1 TATCACTTTCACATA
8027557 TATC
1 TATC
8027561 CACATAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (15 bp):
TATCACTTTCACATA
Found at i:8029774 original size:13 final size:13
Alignment explanation
Indices: 8029756--8029782 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8029746 CGTCGAAGAC
8029756 TTCATGAACCACT
1 TTCATGAACCACT
8029769 TTCATGAACCACT
1 TTCATGAACCACT
8029782 T
1 T
8029783 AACATCGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (13 bp):
TTCATGAACCACT
Found at i:8031813 original size:23 final size:23
Alignment explanation
Indices: 8031784--8031842 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
8031774 ATTTTTTCCA
8031784 AATGACCACATAGGTTTGTCCCG
1 AATGACCACATAGGTTTGTCCCG
* *
8031807 AATGACCACATAGTTTTGTCCTG
1 AATGACCACATAGGTTTGTCCCG
*
8031830 AATAACCACATAG
1 AATGACCACATAG
8031843 AACCCTCGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (23 bp):
AATGACCACATAGGTTTGTCCCG
Found at i:8031998 original size:21 final size:21
Alignment explanation
Indices: 8031974--8032019 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
8031964 TCATATATGG
8031974 TTCACTTTCACGCATATCACT
1 TTCACTTTCACGCATATCACT
*
8031995 TTCACTTTCACGTATATCACT
1 TTCACTTTCACGCATATCACT
8032016 TTCA
1 TTCA
8032020 TATATATCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.30, G:0.04, T:0.41
Consensus pattern (21 bp):
TTCACTTTCACGCATATCACT
Found at i:8032209 original size:23 final size:22
Alignment explanation
Indices: 8032173--8032247 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 22
8032163 CACTGAAGTG
*
8032173 CCACATA-TTTGTCCCGAGGGA
1 CCACATAGTTTGTCCCGAAGGA
*
8032194 CCACATAGGTTTGTCCCGAATGA
1 CCACATA-GTTTGTCCCGAAGGA
* *
8032217 CAACATAGTTTTTTCCCGAAGGA
1 CCACATAG-TTTGTCCCGAAGGA
*
8032240 ACACATAG
1 CCACATAG
8032248 AACCCTCGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 7 0.16
22 1 0.02
23 36 0.82
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Found at i:8036267 original size:46 final size:44
Alignment explanation
Indices: 8036176--8036286 Score: 120
Period size: 46 Copynumber: 2.5 Consensus size: 44
8036166 CAACACAACG
*
8036176 CACATA-ATTTG-CACCGAAGTG-CCACATATTTGTCCCGAAGGAC
1 CACATAGATTTGTCA-CGAA-TGACCACATATTTGTCCCGAAAGAC
* *
8036219 CACATAGATTTGTGACGAATGACCACATAGGTTTGTCCCGAAATAC
1 CACATAGATTTGTCACGAATGACCACATA--TTTGTCCCGAAAGAC
* *
8036265 CACATAGTTTTGTCCCGAATGA
1 CACATAGATTTGTCACGAATGA
8036287 TCAAATAGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
43 8 0.14
44 16 0.28
45 1 0.02
46 32 0.56
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
CACATAGATTTGTCACGAATGACCACATATTTGTCCCGAAAGAC
Found at i:8036294 original size:23 final size:23
Alignment explanation
Indices: 8036176--8036295 Score: 108
Period size: 23 Copynumber: 5.3 Consensus size: 23
8036166 CAACACAACG
8036176 CACATA-ATTTG-CACCGAAGTG-C
1 CACATAGATTTGTC-CCGAA-TGAC
*
8036198 CACAT--ATTTGTCCCGAAGGAC
1 CACATAGATTTGTCCCGAATGAC
**
8036219 CACATAGATTTGTGACGAATGAC
1 CACATAGATTTGTCCCGAATGAC
*
8036242 CACATAGGTTTGTCCCGAAAT-AC
1 CACATAGATTTGTCCCG-AATGAC
* *
8036265 CACATAGTTTTGTCCCGAATGAT
1 CACATAGATTTGTCCCGAATGAC
*
8036288 CAAATAGA
1 CACATAGA
8036296 ACCCTCGACC
Statistics
Matches: 81, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.01
21 16 0.20
22 9 0.11
23 52 0.64
24 3 0.04
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (23 bp):
CACATAGATTTGTCCCGAATGAC
Found at i:8036656 original size:23 final size:21
Alignment explanation
Indices: 8036608--8036690 Score: 62
Period size: 23 Copynumber: 3.8 Consensus size: 21
8036598 ATAATTTGCA
8036608 CCGAAGTG-CCACATA-TTTGT
1 CCGAAG-GACCACATAGTTTGT
8036628 CACGAAGGACCACATAGGTTTGCT
1 C-CGAAGGACCACATA-GTTTG-T
* * *
8036652 CCGAATGACAACATAATTTTGT
1 CCGAAGGACCACAT-AGTTTGT
*
8036674 CCTGAAGGGCCACATAG
1 CC-GAAGGACCACATAG
8036691 AACCCTCGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
20 2 0.04
21 12 0.24
22 4 0.08
23 28 0.57
24 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (21 bp):
CCGAAGGACCACATAGTTTGT
Found at i:8040606 original size:23 final size:23
Alignment explanation
Indices: 8040555--8040598 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8040545 CCCAAGGACA
* *
8040555 ACATAGTTTTGTCCTGATTGACC
1 ACATAGTGTTGTCCTGAATGACC
8040578 ACATAGTGTTGTCCTGAATGA
1 ACATAGTGTTGTCCTGAATGA
8040599 TCATATAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (23 bp):
ACATAGTGTTGTCCTGAATGACC
Found at i:8040747 original size:6 final size:6
Alignment explanation
Indices: 8040738--8040802 Score: 58
Period size: 6 Copynumber: 9.8 Consensus size: 6
8040728 TCACATATGG
*
8040738 TTCACT TTCACAT ATATCACT TTCACT TCCACT TTCACAT ATATCACT
1 TTCACT TTCAC-T -T-TCACT TTCACT TTCACT TTCAC-T -T-TCACT
*
8040786 TTAACT TTCACT TTCAC
1 TTCACT TTCACT TTCAC
8040803 GTATATCCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
6 33 0.67
7 4 0.08
8 4 0.08
9 8 0.16
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (6 bp):
TTCACT
Found at i:8040770 original size:27 final size:27
Alignment explanation
Indices: 8040740--8040809 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
8040730 ACATATGGTT
*
8040740 CACTTTCACATATATCACTTTCACTTC
1 CACTTTCACATATATCACTTTAACTTC
*
8040767 CACTTTCACATATATCACTTTAACTTT
1 CACTTTCACATATATCACTTTAACTTC
*
8040794 CACTTTCACGTATATC
1 CACTTTCACATATATC
8040810 CACATAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.27, C:0.30, G:0.01, T:0.41
Consensus pattern (27 bp):
CACTTTCACATATATCACTTTAACTTC
Found at i:8040988 original size:23 final size:23
Alignment explanation
Indices: 8040962--8041029 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
8040952 GTGCCATATA
8040962 TTTGTACCGAAGGACCACATAGG
1 TTTGTACCGAAGGACCACATAGG
* ** *
8040985 TTTGT-CCTGAATGAAAACATAGT
1 TTTGTACC-GAAGGACCACATAGG
**
8041008 TTTGTACTAAAGGACCACATAG
1 TTTGTACCGAAGGACCACATAG
8041030 AACCCTCGAC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
22 2 0.06
23 31 0.91
24 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTGTACCGAAGGACCACATAGG
Found at i:8041837 original size:21 final size:20
Alignment explanation
Indices: 8041798--8041844 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
8041788 ATTCTTGGTG
8041798 TCGATACCTTCATACCAGTA
1 TCGATACCTTCATACCAGTA
8041818 TCGATACTTCTTCA-ACCAGTA
1 TCGATAC--CTTCATACCAGTA
*
8041839 TTGATA
1 TCGATA
8041845 ATGTTCATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 12 0.50
22 5 0.21
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.34
Consensus pattern (20 bp):
TCGATACCTTCATACCAGTA
Found at i:8041919 original size:23 final size:23
Alignment explanation
Indices: 8041889--8041935 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8041879 AACCTTATAG
*
8041889 TATCGATATTGCTCTTCCAATAT
1 TATCGATATTACTCTTCCAATAT
* *
8041912 TATCGATATTATTCTTCCAGTAT
1 TATCGATATTACTCTTCCAATAT
8041935 T
1 T
8041936 GATACCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.47
Consensus pattern (23 bp):
TATCGATATTACTCTTCCAATAT
Found at i:8045922 original size:10 final size:10
Alignment explanation
Indices: 8045903--8045942 Score: 62
Period size: 10 Copynumber: 3.8 Consensus size: 10
8045893 AATTGAGTTC
8045903 AAAGACAAAAA
1 AAAGA-AAAAA
8045914 AAAGAAAAAAA
1 AAAG-AAAAAA
8045925 AAAGAAAAAA
1 AAAGAAAAAA
8045935 AAAGAAAA
1 AAAGAAAA
8045943 GAATAAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 14 0.50
11 13 0.46
12 1 0.04
ACGTcount: A:0.88, C:0.03, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:8045923 original size:11 final size:11
Alignment explanation
Indices: 8045903--8045953 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
8045893 AATTGAGTTC
*
8045903 AAAGACAAAAA
1 AAAGAAAAAAA
8045914 AAAGAAAAAAA
1 AAAGAAAAAAA
8045925 AAAG-AAAAAA
1 AAAGAAAAAAA
8045935 AAAGAAAAGAATA
1 AAAGAAAA-AA-A
8045948 AAAGAA
1 AAAGAA
8045954 TTTTAAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 10 0.28
11 17 0.47
12 2 0.06
13 7 0.19
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:8045936 original size:15 final size:15
Alignment explanation
Indices: 8045909--8045950 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8045899 GTTCAAAGAC
*
8045909 AAAAA-AAAGAAAAA
1 AAAAAGAAAAAAAAA
8045923 AAAAAGAAAAAAAAA
1 AAAAAGAAAAAAAAA
*
8045938 GAAAAGAATAAAA
1 AAAAAGAA-AAAA
8045951 GAATTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.21
15 15 0.62
16 4 0.17
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAAAAAA
Found at i:8051875 original size:21 final size:22
Alignment explanation
Indices: 8051851--8051924 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 22
8051841 CACCGATGTG
8051851 CCACATA-TTTGTCCCGAAGGA
1 CCACATAGTTTGTCCCGAAGGA
* *
8051872 CCACATAGTTT-TGCCTCAAAAGA
1 CCACATAGTTTGT-CC-CGAAGGA
*
8051895 CCACATAGTTTTGTCCAGAAGGA
1 CCACATAG-TTTGTCCCGAAGGA
8051918 CCACATA
1 CCACATA
8051925 AAACTCTCGA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 8 0.19
22 5 0.12
23 24 0.56
24 5 0.12
25 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Found at i:8054631 original size:19 final size:19
Alignment explanation
Indices: 8054596--8054634 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8054586 TAATTAAATC
*
8054596 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGACGCATGG
*
8054615 AGAGTGCATCGGCGCATGG
1 AGAGTGCATCGACGCATGG
8054634 A
1 A
8054635 ATACATTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.38, T:0.18
Consensus pattern (19 bp):
AGAGTGCATCGACGCATGG
Found at i:8054686 original size:21 final size:21
Alignment explanation
Indices: 8054660--8054699 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8054650 CAATTTATTC
*
8054660 ATTGATGCATTGATGCATGAT
1 ATTGATGCATCGATGCATGAT
*
8054681 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
8054700 CCTTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGAT
Found at i:8057312 original size:24 final size:24
Alignment explanation
Indices: 8057241--8057320 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
8057231 CATGGTCTTG
* * *
8057241 TGCATCTATGCATATTC-AAGGCA
1 TGCATCGATGCACATTCAAAGGGA
* * *
8057264 TGCATCGGTG--CA-TCATACGGA
1 TGCATCGATGCACATTCAAAGGGA
8057285 TGCATCGATGCACATTCAAAGGGA
1 TGCATCGATGCACATTCAAAGGGA
8057309 TGCATCGATGCA
1 TGCATCGATGCA
8057321 TTGTTAAGTG
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
20 2 0.05
21 13 0.30
23 10 0.23
24 19 0.43
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
TGCATCGATGCACATTCAAAGGGA
Found at i:8063156 original size:18 final size:17
Alignment explanation
Indices: 8063102--8063150 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
8063092 TTCGACTCCT
* *
8063102 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TGA
8063120 GAGTGCATCGATGCATGA
1 -AGTGCATCGATGCATGA
8063138 AGTGCATTCGATG
1 AGTGCA-TCGATG
8063151 TTTGAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATGA
Found at i:8063171 original size:64 final size:60
Alignment explanation
Indices: 8063103--8063309 Score: 166
Period size: 64 Copynumber: 3.2 Consensus size: 60
8063093 TCGACTCCTA
*
8063103 GTGCATCGGTGCACTAAGAGTGCATCGATGCATGAAGTGCATTCGATGTTTGAA-AAAT-AGCCT
1 GTGCATCGATGCA-T-AGAGTGCATCGATGCATGAA-TGCATTCGATGTTTGAATAAATCAG--T
* * * *
8063166 GGTGCATCGATTCATGGATTGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATCAGT
1 -GTGCATCGATGCATAGA--GTGCATCGATGCAT-GAATGCATTCGATGTTTGAA-TAAATCAGT
* * * * * *
8063231 GTGCACCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTTTTAATTTATTCATT
1 GTGCATCGATGCAT--AGAGTGCATCGATGCAT-GAATGCATTCGATGTTTGAA-TAAATCAGT
8063295 GATGCATCGATGCAT
1 G-TGCATCGATGCAT
8063310 GATATTGATG
Statistics
Matches: 119, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
62 2 0.02
63 1 0.01
64 93 0.78
65 15 0.13
66 6 0.05
67 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (60 bp):
GTGCATCGATGCATAGAGTGCATCGATGCATGAATGCATTCGATGTTTGAATAAATCAGT
Found at i:8065637 original size:11 final size:11
Alignment explanation
Indices: 8065623--8065654 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8065613 ATTAGGATAG
8065623 TATTTTATTAT
1 TATTTTATTAT
*
8065634 TATTTTATTGT
1 TATTTTATTAT
8065645 TATTTTATTA
1 TATTTTATTA
8065655 AACATTCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8066580 original size:23 final size:23
Alignment explanation
Indices: 8066563--8066621 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
8066553 ATTTGTCTTG
8066563 AATGACCACATAGGTTTGTCCCA
1 AATGACCACATAGGTTTGTCCCA
*
8066586 AATGACCACATAGTTTTGTCCCA
1 AATGACCACATAGGTTTGTCCCA
* *
8066609 AATGGCCATATAG
1 AATGACCACATAG
8066622 AACCCTCGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (23 bp):
AATGACCACATAGGTTTGTCCCA
Found at i:8067109 original size:369 final size:369
Alignment explanation
Indices: 8066430--8067139 Score: 1057
Period size: 369 Copynumber: 1.9 Consensus size: 369
8066420 TGATATACCC
* * * * *
8066430 TTATATTACTTTATTTTTAATACCCCGACGCATACTACTGGGAACGTTAGGTATTTGAGTATATT
1 TTATATTACTTTATTTTTAATAACCCGACGCATACTACTGAGAAAGCTAGGTATTTGAGTACATT
* * * * * * *
8066495 GAGGTTTTGCACTAATATTGTAACCAAAGCTCATAAAATTTGCATCGAAGTGCCATATATTTGTC
66 GAGGTTGTGCACTAATATTGTAACCAAAGCTCACAAAATTTCCACCAAAGTGCCACATATTTATC
* *
8066560 TTGAATGACCACATAGGTTTGTCCCAAATGACCACATAGTTTTGTCCCAAATGGCCATATAGAAC
131 TGGAAGGACCACATAGGTTTGTCCCAAATGACCACATAGTTTTGTCCCAAATGGCCATATAGAAC
** * * *
8066625 CCTCGACTCTTGACATGCTAACTATAACTCTAATTCTCATACATATACCTTGGGCTTTAGCTTTA
196 CCTAAACTCTTAACATGCCAACTATAACTCTAATTCTCATAAATATACCTTGGGCTTTAGCTTTA
*
8066690 CCATTATTTTTCATTTCAGTATTTAAAGTGTATCTTATTCTCATAAAGTACATTCACATATGATT
261 CCATTATTTTTCATTTCACTATTTAAAGTGTATCTTATTCTCATAAAGTACATTCACATATGATT
8066755 CACTTTCACGTATATCCATATAAAACCGTAATCACTTGTTCAGT
326 CACTTTCACGTATATCCATATAAAACCGTAATCACTTGTTCAGT
* *
8066799 TTATATTACTTTATTTTTAATAATCCGACGCATGCTACTGAGAAAGCTAGGTATTTGAGTACATT
1 TTATATTACTTTATTTTTAATAACCCGACGCATACTACTGAGAAAGCTAGGTATTTGAGTACATT
* * * * *
8066864 GAGGTTGTGCACTCATGTTGTCACCACAA-CTCACATAATTTCCACCAAAGTGTCACATATTTAT
66 GAGGTTGTGCACTAATATTGTAACCA-AAGCTCACAAAATTTCCACCAAAGTGCCACATATTTAT
* * *
8066928 CTGGAAGGACCACATAGGTTTGTCGCGAAA-GAGCACATAGTTTTGTCCCGAA-GGTCCATATAG
130 CTGGAAGGACCACATAGGTTTGTC-CCAAATGACCACATAGTTTTGTCCCAAATGG-CCATATAG
* * *
8066991 AACCCTAAACTCTTAACATTCCATCTATAACTCTAATTCTCATAAATATACCTTGGGGTTTAGCT
193 AACCCTAAACTCTTAACATGCCAACTATAACTCTAATTCTCATAAATATACCTTGGGCTTTAGCT
*
8067056 TTACCATTATTTTTCATTTCACTATTTAAAGTGTATCTTATTCTCATAAAGTACATTCACGTATG
258 TTACCATTATTTTTCATTTCACTATTTAAAGTGTATCTTATTCTCATAAAGTACATTCACATATG
*
8067121 GTTCACTTTCACGTATATC
323 ATTCACTTTCACGTATATC
8067140 ACTTTTGCTT
Statistics
Matches: 303, Mismatches: 35, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
368 2 0.01
369 295 0.97
370 6 0.02
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (369 bp):
TTATATTACTTTATTTTTAATAACCCGACGCATACTACTGAGAAAGCTAGGTATTTGAGTACATT
GAGGTTGTGCACTAATATTGTAACCAAAGCTCACAAAATTTCCACCAAAGTGCCACATATTTATC
TGGAAGGACCACATAGGTTTGTCCCAAATGACCACATAGTTTTGTCCCAAATGGCCATATAGAAC
CCTAAACTCTTAACATGCCAACTATAACTCTAATTCTCATAAATATACCTTGGGCTTTAGCTTTA
CCATTATTTTTCATTTCACTATTTAAAGTGTATCTTATTCTCATAAAGTACATTCACATATGATT
CACTTTCACGTATATCCATATAAAACCGTAATCACTTGTTCAGT
Found at i:8072871 original size:21 final size:22
Alignment explanation
Indices: 8072845--8072941 Score: 106
Period size: 23 Copynumber: 4.3 Consensus size: 22
8072835 ACCTGAAGTG
*
8072845 CCACATA-TTTGTCTCGAAGGA
1 CCACATAGTTTGTCCCGAAGGA
*
8072866 CTACATAGGTTTGTCCCGAAGGA
1 CCACATA-GTTTGTCCCGAAGGA
**
8072889 CCACATAGTTTAGTCCCGAAATA
1 CCACATAGTTT-GTCCCGAAGGA
* *
8072912 CCATATAGTTTTGTCCCGAAAGA
1 CCACATAG-TTTGTCCCGAAGGA
8072935 CCACATA
1 CCACATA
8072942 AAACCCTCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 6 0.09
22 4 0.06
23 51 0.80
24 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Found at i:8073709 original size:23 final size:24
Alignment explanation
Indices: 8073675--8073742 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 24
8073665 GTGCCATATA
8073675 TTTGTACC-GAATGACCACATAGGT
1 TTTGT-CCTGAATGACCACATAGGT
**
8073699 TTT-TCCTGAATGAAAACATA-GT
1 TTTGTCCTGAATGACCACATAGGT
*
8073721 TTTGTCCTGAAGGACCACATAG
1 TTTGTCCTGAATGACCACATAG
8073743 AACCCTCGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 7 0.19
23 26 0.72
24 3 0.08
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (24 bp):
TTTGTCCTGAATGACCACATAGGT
Found at i:8079968 original size:31 final size:31
Alignment explanation
Indices: 8079933--8079999 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
8079923 TCTAATTTAA
* *
8079933 AGGGGCAAAATATAATTAATCATATAAAATG
1 AGGGGCAAAATATAATTAACCATAGAAAATG
*
8079964 AGGGGCAAAGTATAATTAACCATAGAAAATG
1 AGGGGCAAAATATAATTAACCATAGAAAATG
8079995 AGGGG
1 AGGGG
8080000 AAATGTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.07, G:0.24, T:0.21
Consensus pattern (31 bp):
AGGGGCAAAATATAATTAACCATAGAAAATG
Found at i:8086775 original size:2 final size:2
Alignment explanation
Indices: 8086764--8086801 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8086754 TAACTATAGG
8086764 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8086802 GAAAATAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8086979 original size:30 final size:31
Alignment explanation
Indices: 8086938--8086997 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
8086928 ACATGCTTCC
**
8086938 ATGATATCTAAATGATATGTAAACATAATAA
1 ATGATATCTAAAACATATGTAAACATAATAA
8086969 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGTAAACATAATA
8086998 TAAAGCTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.30
Consensus pattern (31 bp):
ATGATATCTAAAACATATGTAAACATAATAA
Found at i:8087052 original size:20 final size:19
Alignment explanation
Indices: 8087016--8087054 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8087006 AGTAAAGATG
**
8087016 TGAAAACATATGTTATGCA
1 TGAAAACATATAATATGCA
8087035 TGAAAATCATATAATATGCA
1 TGAAAA-CATATAATATGCA
8087055 AGTGAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (19 bp):
TGAAAACATATAATATGCA
Found at i:8090411 original size:43 final size:44
Alignment explanation
Indices: 8090328--8090421 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 44
8090318 TAAGGGGGAA
*
8090328 TGTTAAAAACTTTATTGCATCTTTGAATAAAGCTATTTTTAGTG
1 TGTTAAAAACTTTAGTGCATCTTTGAATAAAGCTATTTTTAGTG
8090372 TGTTAAAAACTTTAGTGCATC-TTGAATAAAGCTATTTTTAGTG
1 TGTTAAAAACTTTAGTGCATCTTTGAATAAAGCTATTTTTAGTG
8090415 TGGTTAA
1 T-GTTAA
8090422 TCTTAACATA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 23 0.48
44 25 0.52
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.44
Consensus pattern (44 bp):
TGTTAAAAACTTTAGTGCATCTTTGAATAAAGCTATTTTTAGTG
Found at i:8092469 original size:20 final size:22
Alignment explanation
Indices: 8092427--8092470 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
8092417 CCCTCTCTCT
* *
8092427 ATATATATTATTTTGTATTAAA
1 ATATATATTATTGTGTATAAAA
8092449 ATATATATTA-TGT-TATAAAA
1 ATATATATTATTGTGTATAAAA
8092469 AT
1 AT
8092471 TAATTGACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 2 0.10
22 10 0.50
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATATATTATTGTGTATAAAA
Found at i:8093905 original size:3 final size:3
Alignment explanation
Indices: 8093897--8093941 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
8093887 TCTATCCTTA
* * *
8093897 TAT TAT TAT TAT TA- TAT TAC TAT TAT TAT TAT AAA TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8093942 TACAAACCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:8093913 original size:14 final size:14
Alignment explanation
Indices: 8093894--8093940 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
8093884 CAATCTATCC
*
8093894 TTATATTATTATTA
1 TTATATTAATATTA
*
8093908 TTATATTACTATTA
1 TTATATTAATATTA
*
8093922 TTATTATAAATATTA
1 TTA-TATTAATATTA
8093937 TTAT
1 TTAT
8093941 TTACAAACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATATTAATATTA
Found at i:8094098 original size:24 final size:23
Alignment explanation
Indices: 8094045--8094117 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
8094035 CCTGACCCGG
* * *
8094045 AGCCCAAACTAAACCCAATCGAA
1 AGCCCAAACAAAACCCAACCCAA
*
8094068 ATACCCAAACAAAACCCAGACCCAA
1 A-GCCCAAACAAAACCCA-ACCCAA
*
8094093 AGCCCAAACCAGAACCCAACCCAA
1 AGCCCAAA-CAAAACCCAACCCAA
8094117 A
1 A
8094118 ACCCTAACCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
23 1 0.02
24 27 0.66
25 13 0.32
ACGTcount: A:0.49, C:0.40, G:0.07, T:0.04
Consensus pattern (23 bp):
AGCCCAAACAAAACCCAACCCAA
Found at i:8094120 original size:12 final size:12
Alignment explanation
Indices: 8094055--8094126 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
8094045 AGCCCAAACT
* *
8094055 AAACCCAATCGA
1 AAACCCAACCCA
*
8094067 AATACCCAA-ACA
1 AA-ACCCAACCCA
8094079 AAACCCAGACCCA
1 AAACCCA-ACCCA
* *
8094092 AAGCCCAAACCA
1 AAACCCAACCCA
*
8094104 GAACCCAACCCA
1 AAACCCAACCCA
8094116 AAACCCTAACC
1 AAACCC-AACC
8094127 TAAACTTAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
11 5 0.11
12 24 0.51
13 18 0.38
ACGTcount: A:0.49, C:0.42, G:0.06, T:0.04
Consensus pattern (12 bp):
AAACCCAACCCA
Found at i:8106964 original size:21 final size:22
Alignment explanation
Indices: 8106925--8106966 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8106915 AAATAAAAAT
8106925 AAAAATAAAACAAAGAACTTTG
1 AAAAATAAAACAAAGAACTTTG
*
8106947 AAAAATAAAAGAAA-AACTTT
1 AAAAATAAAACAAAGAACTTT
8106967 TATTAAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (22 bp):
AAAAATAAAACAAAGAACTTTG
Found at i:8107160 original size:5 final size:5
Alignment explanation
Indices: 8107152--8107181 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8107142 GATAAGATAA
8107152 AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT
8107182 TTAAACTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:8107302 original size:25 final size:22
Alignment explanation
Indices: 8107254--8107296 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8107244 TACATTCGTT
* *
8107254 CTTCTAGAAGTGTTGACTGAAC
1 CTTCTAGAAGTGCTGACTCAAC
8107276 CTTCTAGAAGATGCTGACTCA
1 CTTCTAGAAG-TGCTGACTCA
8107297 TCACCTCGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (22 bp):
CTTCTAGAAGTGCTGACTCAAC
Found at i:8116595 original size:21 final size:21
Alignment explanation
Indices: 8116571--8116631 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
8116561 AACTTTGAAA
8116571 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
8116592 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
8116606 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
8116627 AAATG
1 AAATG
8116632 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:8116662 original size:37 final size:37
Alignment explanation
Indices: 8116563--8116681 Score: 174
Period size: 35 Copynumber: 3.3 Consensus size: 37
8116553 TGATAACCAA
8116563 CTTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATA-GGTTTTCAAAGTTTGGTAAATGTTT
8116600 CTTTG-AAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
* *
8116635 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
*
8116672 -GTTGAAAAAT
1 CTTTGAAAAAT
8116682 GATAATGGGA
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
35 30 0.39
36 18 0.24
37 28 0.37
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (37 bp):
CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:8121215 original size:21 final size:21
Alignment explanation
Indices: 8121191--8121251 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
8121181 AACTTTGAAA
8121191 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
8121212 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
8121226 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
8121247 AAATG
1 AAATG
8121252 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:8121282 original size:37 final size:37
Alignment explanation
Indices: 8121183--8121301 Score: 174
Period size: 35 Copynumber: 3.3 Consensus size: 37
8121173 TGATAACCAA
8121183 CTTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATA-GGTTTTCAAAGTTTGGTAAATGTTT
8121220 CTTTG-AAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
* *
8121255 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
*
8121292 -GTTGAAAAAT
1 CTTTGAAAAAT
8121302 GATAATGGGA
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
35 30 0.39
36 18 0.24
37 28 0.37
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (37 bp):
CTTTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:8123499 original size:31 final size:31
Alignment explanation
Indices: 8123464--8123531 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
8123454 TGAAACCAGA
8123464 GAAACAAATCGCAATGACTGCGCTTGAAGAC
1 GAAACAAATCGCAATGACTGCGCTTGAAGAC
* *
8123495 GAAACGAATCGCAATGACTGCGCTTGAAGAT
1 GAAACAAATCGCAATGACTGCGCTTGAAGAC
8123526 GAAACA
1 GAAACA
8123532 TCACAGCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.16
Consensus pattern (31 bp):
GAAACAAATCGCAATGACTGCGCTTGAAGAC
Found at i:8125126 original size:11 final size:11
Alignment explanation
Indices: 8125107--8125146 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
8125097 GAAAATATAG
8125107 GGTTAGGGCTA
1 GGTTAGGGCTA
*
8125118 GGTTGGGGCTA
1 GGTTAGGGCTA
*
8125129 GGTTAGGGTTA
1 GGTTAGGGCTA
8125140 TGGTTAG
1 -GGTTAG
8125147 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.15, C:0.05, G:0.47, T:0.33
Consensus pattern (11 bp):
GGTTAGGGCTA
Found at i:8135368 original size:56 final size:56
Alignment explanation
Indices: 8135306--8135611 Score: 213
Period size: 54 Copynumber: 5.6 Consensus size: 56
8135296 AACTAAAGAT
*
8135306 CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAA
1 CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
* *
8135362 CTAAGTATGATTTTT-AAAAGTTTCTTGATGACTTTTAAATGAGTTTTCAAAG-AG
1 CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
** * * * *
8135416 CTAAGTCCGA-TTTTC-GAAAGTTTTTTTATGATTTTTTCAAATGATTTTTTAAAGAAG
1 CTAAGTATGATTTTTCAG-AAGTTTCTTGATGA-TTTTT-AAATGAGTTTTCAAAGAAG
* * * * * * *
8135473 CTAAG-ACTGA-TTTTCA-AGGGTTTCTTAATG-TTTTCAAATGAATTTTGAAATAAT
1 CTAAGTA-TGATTTTTCAGA-AGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
* ** * ** * ** *
8135527 TTAAGCCTAATTTTT-AGGGGTTTCTTGATG-TTTTCAAAT-AAATTTGAAAGAAG
1 CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
** **
8135580 CTAAGCCTGA-TTTTCAGGGGTTTCTTGATGAT
1 CTAAGTATGATTTTTCAGAAGTTTCTTGATGAT
8135612 AACTATAAGT
Statistics
Matches: 206, Mismatches: 31, Indels: 28
0.78 0.12 0.11
Matches are distributed among these distances:
52 4 0.02
53 38 0.18
54 64 0.31
55 47 0.23
56 30 0.15
57 23 0.11
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (56 bp):
CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
Found at i:8135388 original size:55 final size:55
Alignment explanation
Indices: 8135306--8135518 Score: 225
Period size: 55 Copynumber: 3.9 Consensus size: 55
8135296 AACTAAAGAT
* *
8135306 CTAAGTATGATTTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAA
1 CTAAGTATGA-TTTTCAAAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
* *
8135362 CTAAGTATGATTTTTAAAAGTTTCTTGATGACTTTTAAATGAGTTTTCAAAG-AG
1 CTAAGTATGATTTTCAAAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
** * * * * *
8135416 CTAAGTCCGATTTTCGAAAGTTTTTTTATGATTTTTTCAAATGATTTTTTAAAGAAG
1 CTAAGTATGATTTTCAAAAGTTTCTTGATGA-TTTTT-AAATGAGTTTTCAAAGAAG
** * * *
8135473 CTAAG-ACTGATTTTCAAGGGTTTCTTAATG-TTTTCAAATGAATTTT
1 CTAAGTA-TGATTTTCAAAAGTTTCTTGATGATTTTTAAATGAGTTTT
8135519 GAAATAATTT
Statistics
Matches: 131, Mismatches: 22, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
54 36 0.27
55 47 0.36
56 24 0.18
57 24 0.18
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.45
Consensus pattern (55 bp):
CTAAGTATGATTTTCAAAAGTTTCTTGATGATTTTTAAATGAGTTTTCAAAGAAG
Found at i:8136420 original size:237 final size:239
Alignment explanation
Indices: 8135880--8136423 Score: 742
Period size: 238 Copynumber: 2.3 Consensus size: 239
8135870 TTATTACTTA
* * *
8135880 GTAAGTCTTTTGAGCATGATGCATAAATCCTTTGGGTCATCTATACGCCTTTCGAGCAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * * * *
8135945 AAATCCTTCAAGCCATCCATAAGACCTTCGGAAGGATGTTTTCACATGATTTTCGAAAAATGAGA
66 AAGTCCTTCAAGCCATCCATAAGACATTCGGAACGATATTTTCACATGATGTTCGAAAAATGAGA
* *
8136010 AAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTTTATTTTTTGAAAAGTAAGAAAA
131 AAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTGTATTTTTTGAAAAATAAGAAAA
* * * *
8136075 TGATTTTCAAATTTTCTTACTTAGTCAGTCTTTCGGGCCATCAG
196 TGATTTCCAAAGTTTCTTACTTAATAAGTCTTTCGGGCCATCAG
* * * * *
8136119 G-AAGTCTTTCGTGCATGATGTCGAAATCCTTCGGGTCATATATAAGCCTTTCGAGCAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * *
8136183 AAGTCCTTCAGGCCATCCATAATACATTCGGGCACGATATTTTCACATGATGTTC-AAAAATGAG
66 AAGTCCTTCAAGCCATCCATAAGACATTC-GGAACGATATTTTCACATGATGTTCGAAAAATGAG
* *
8136247 AAAGCGATTTCCAAAGTTTCTCATTTAAATCT-TTTCTGAAAATTGT-TTTTTT-AAAAATAAGA
130 AAAGCGATTTCCAAAATTTCTCATTTAAATATGTTT-TG-AAATTGTATTTTTTGAAAAATAAGA
*
8136309 AAATGATTTCCAGAGTTTCTTACTTAATAAGATC-TTCGGGCCATC-G
193 AAATGATTTCCAAAGTTTCTTACTTAATAAG-TCTTTCGGGCCATCAG
* * * *
8136355 GTAAGTCTTTCAAGCTTGATGCCTAAATCCTTTGAGTCATCTATAAGCCTTTCGAGTAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
8136420 AAGT
66 AAGT
8136424 TCTCCGGCCC
Statistics
Matches: 266, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
236 2 0.01
237 107 0.40
238 129 0.48
239 28 0.11
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (239 bp):
GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
AAGTCCTTCAAGCCATCCATAAGACATTCGGAACGATATTTTCACATGATGTTCGAAAAATGAGA
AAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTGTATTTTTTGAAAAATAAGAAAA
TGATTTCCAAAGTTTCTTACTTAATAAGTCTTTCGGGCCATCAG
Found at i:8136452 original size:237 final size:239
Alignment explanation
Indices: 8135880--8136481 Score: 756
Period size: 237 Copynumber: 2.5 Consensus size: 239
8135870 TTATTACTTA
* * *
8135880 GTAAGTCTTTTGAGCATGATGCATAAATCCTTTGGGTCATCTATACGCCTTTCGAGCAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * *
8135945 AAATCCTTCAAGCCATCCATAAGACCTTC-GG-AAGGATGTTTTCACATGATTTTCGAAAAATGA
66 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAA-GATGTTTTCACATGATGTTC-AAAAATGA
* *
8136008 GAAAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTTTATTTTTTGAAAAGTAAGAA
129 GAAAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTGTATTTTTTGAAAAATAAGAA
* * * *
8136073 AATGATTTTCAAATTTTCTTACTTAGTCAGTCTTTCGGGCCATCAG
194 AATGATTTCCAAAGTTTCTTACTTAATAAGTCTTTCGGGCCATCAG
* * * * *
8136119 G-AAGTCTTTCGTGCATGATGTCGAAATCCTTCGGGTCATATATAAGCCTTTCGAGCAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * * *
8136183 AAGTCCTTCAGGCCATCCATAATACATTCGGGCACGATATTTTCACATGATGTTCAAAAATGAGA
66 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATGATGTTCAAAAATGAGA
* *
8136248 AAGCGATTTCCAAAGTTTCTCATTTAAATCT-TTTCTGAAAATTGT-TTTTTT-AAAAATAAGAA
131 AAGCGATTTCCAAAATTTCTCATTTAAATATGTTT-TG-AAATTGTATTTTTTGAAAAATAAGAA
*
8136310 AATGATTTCCAGAGTTTCTTACTTAATAAGATC-TTCGGGCCATC-G
194 AATGATTTCCAAAGTTTCTTACTTAATAAG-TCTTTCGGGCCATCAG
* * * *
8136355 GTAAGTCTTTCAAGCTTGATGCCTAAATCCTTTGAGTCATCTATAAGCCTTTCGAGTAAGATGAT
1 GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * ** * *
8136420 AAGTTC-TCCGGCCCAAT-TGTAAGACCTTCGGGCAAGATGTTTTCATATGGTGTTCAGAAAAT
66 AAGTCCTTCAGG-CC-ATCCATAAGACCTTCGGGCAAGATGTTTTCACATGATGTTCA-AAAAT
8136482 AAAAAAGAGA
Statistics
Matches: 311, Mismatches: 43, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
236 6 0.02
237 141 0.45
238 136 0.44
239 27 0.09
240 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (239 bp):
GTAAGTCTTTCGAGCATGATGCCTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATGATGTTCAAAAATGAGA
AAGCGATTTCCAAAATTTCTCATTTAAATATGTTTTGAAATTGTATTTTTTGAAAAATAAGAAAA
TGATTTCCAAAGTTTCTTACTTAATAAGTCTTTCGGGCCATCAG
Found at i:8136503 original size:9 final size:9
Alignment explanation
Indices: 8136491--8136518 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8136481 TAAAAAAGAG
8136491 AAAAATAAA
1 AAAAATAAA
8136500 AAAAATAAA
1 AAAAATAAA
8136509 AAAAATAAA
1 AAAAATAAA
8136518 A
1 A
8136519 TCTGCTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAATAAA
Found at i:8136509 original size:15 final size:15
Alignment explanation
Indices: 8136477--8136519 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8136467 TGGTGTTCAG
* *
8136477 AAAATAAAAAAGAGA
1 AAAATAAAAAAAATA
8136492 AAAATAAAAAAAATA
1 AAAATAAAAAAAATA
*
8136507 AAAA-AAATAAAAT
1 AAAATAAAAAAAAT
8136520 CTGCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 8 0.32
15 17 0.68
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.12
Consensus pattern (15 bp):
AAAATAAAAAAAATA
Found at i:8137791 original size:2 final size:2
Alignment explanation
Indices: 8137784--8137822 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
8137774 AGGGCCGGTC
*
8137784 GA GA GA GA GA GA GA GA GA GA GA G- GA GA GA TGG GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -GA GA GA GA G
8137823 TTTGTTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.94
3 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.54, T:0.03
Consensus pattern (2 bp):
GA
Found at i:8138763 original size:29 final size:29
Alignment explanation
Indices: 8138704--8138764 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
8138694 TATTAGCTAG
*
8138704 TCCTTAAACTTTAAGTTTTATAAATTTAGA
1 TCCTTAAACTTTAACTTTTAT-AATTTAGA
*
8138734 TCCTTAAATTTTAGACTTTTAT-ATTTAGA
1 TCCTTAAACTTTA-ACTTTTATAATTTAGA
8138763 TC
1 TC
8138765 TCCTAATTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 9 0.32
30 12 0.43
31 7 0.25
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (29 bp):
TCCTTAAACTTTAACTTTTATAATTTAGA
Found at i:8139767 original size:2 final size:2
Alignment explanation
Indices: 8139760--8139804 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8139750 AATGATAGTA
8139760 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8139802 AT A
1 AT A
8139805 GGTTTATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8148951 original size:9 final size:9
Alignment explanation
Indices: 8148937--8148961 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8148927 TATACTCAAT
8148937 CATAAATTC
1 CATAAATTC
8148946 CATAAATTC
1 CATAAATTC
8148955 CATAAAT
1 CATAAAT
8148962 GTCTTGGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
CATAAATTC
Found at i:8149010 original size:32 final size:33
Alignment explanation
Indices: 8148953--8149016 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
8148943 TTCCATAAAT
*
8148953 TCCATAAATGTCTTGGACAAAGTGTAAACAAAA
1 TCCATAAATGTCTTAGACAAAGTGTAAACAAAA
*
8148986 TCCATAAAT-TCTTAGACAATGTGTAAACAAA
1 TCCATAAATGTCTTAGACAAAGTGTAAACAAA
8149017 TTTTCTTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 20 0.69
33 9 0.31
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (33 bp):
TCCATAAATGTCTTAGACAAAGTGTAAACAAAA
Found at i:8150836 original size:23 final size:23
Alignment explanation
Indices: 8150810--8150873 Score: 119
Period size: 23 Copynumber: 2.8 Consensus size: 23
8150800 CAAACATAAC
8150810 AAATGAACATAATCGAACACAAT
1 AAATGAACATAATCGAACACAAT
8150833 AAATGAACATAATCGAACACAAT
1 AAATGAACATAATCGAACACAAT
*
8150856 AAATGAACATAAACGAAC
1 AAATGAACATAATCGAAC
8150874 GTAAACAACA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.58, C:0.17, G:0.09, T:0.16
Consensus pattern (23 bp):
AAATGAACATAATCGAACACAAT
Found at i:8150984 original size:16 final size:18
Alignment explanation
Indices: 8150955--8150991 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
8150945 TATTTTCTTT
8150955 AATTGATTTAAG-TTTAA
1 AATTGATTTAAGTTTTAA
*
8150972 AATT-ATTTGAGTTTTAA
1 AATTGATTTAAGTTTTAA
8150989 AAT
1 AAT
8150992 ATTAATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
AATTGATTTAAGTTTTAA
Found at i:8151105 original size:95 final size:95
Alignment explanation
Indices: 8150942--8151129 Score: 358
Period size: 95 Copynumber: 2.0 Consensus size: 95
8150932 ATTGGTATGG
8150942 TTATATTTTCTTTAATTGATTTAAGTTTAAAATTATTTGAGTTTTAAAATATTAATGATTGAGTC
1 TTATATTTTCTTTAATTGATTTAAGTTTAAAATTATTTGAGTTTTAAAATATTAATGATTGAGTC
8151007 TTAATATTTTAAATGGGTATGGAGATTGGT
66 TTAATATTTTAAATGGGTATGGAGATTGGT
* *
8151037 TTATATTTTCTTTAATTGATTTAGGTTTAAAATTATTTTAGTTTTAAAATATTAATGATTGAGTC
1 TTATATTTTCTTTAATTGATTTAAGTTTAAAATTATTTGAGTTTTAAAATATTAATGATTGAGTC
8151102 TTAATATTTTAAATGGGTATGGAGATTG
66 TTAATATTTTAAATGGGTATGGAGATTG
8151130 AACTTTATAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.50
Consensus pattern (95 bp):
TTATATTTTCTTTAATTGATTTAAGTTTAAAATTATTTGAGTTTTAAAATATTAATGATTGAGTC
TTAATATTTTAAATGGGTATGGAGATTGGT
Found at i:8151188 original size:34 final size:34
Alignment explanation
Indices: 8151145--8151229 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
8151135 TATATAAACG
* *
8151145 AACGGACATAAACGAATATACACGTACATAAATA
1 AACGAACATAAACGAATATACACGGACATAAATA
** * * *
8151179 AACGAACATAGGCGAACATACATGGACATAAATG
1 AACGAACATAAACGAATATACACGGACATAAATA
*
8151213 AACGTACATAAACGAAT
1 AACGAACATAAACGAAT
8151230 TGATTACCCA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.51, C:0.18, G:0.15, T:0.16
Consensus pattern (34 bp):
AACGAACATAAACGAATATACACGGACATAAATA
Found at i:8151197 original size:24 final size:24
Alignment explanation
Indices: 8151152--8151198 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8151142 ACGAACGGAC
* *
8151152 ATAAACGAATATACACGTACATAA
1 ATAAACGAACATACACGAACATAA
**
8151176 ATAAACGAACATAGGCGAACATA
1 ATAAACGAACATACACGAACATA
8151199 CATGGACATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (24 bp):
ATAAACGAACATACACGAACATAA
Found at i:8153362 original size:89 final size:88
Alignment explanation
Indices: 8153250--8153423 Score: 280
Period size: 89 Copynumber: 2.0 Consensus size: 88
8153240 ACACAGCATA
8153250 CCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGAT-CTGTAGGGTTACCCTAAGCACACAG
1 CCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGATAC-GTA-GGTTA-CCTAAGCACACAG
8153314 C-AAAGGGAACCAACCTAAGGATATG
63 CAAAAGGGAACCAACCTAAGGATATG
*
8153339 CCTTGGGGCCTATGGGCCTACCCAAGGATATCCTTAGATACGTAGGTTACCTAAGCACACAGCAA
1 CCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGATACGTAGGTTACCTAAGCACACAGCAA
* *
8153404 AAGGGAATCGACCTAAGGAT
66 AAGGGAACCAACCTAAGGAT
8153424 CGTTTATCAA
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
87 14 0.17
88 24 0.30
89 41 0.51
90 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.20
Consensus pattern (88 bp):
CCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGATACGTAGGTTACCTAAGCACACAGCAA
AAGGGAACCAACCTAAGGATATG
Found at i:8155881 original size:89 final size:90
Alignment explanation
Indices: 8155718--8156083 Score: 395
Period size: 89 Copynumber: 4.1 Consensus size: 90
8155708 CCATAACTGT
* * ** *
8155718 ATCCGTAGGGCTTACCCTCAGCACACAGCAAAAAGGGAGCCAACCTAAGGATATACCTTGGGGCC
1 ATCCGTAGGG-TTACCCTAAGCACACAAC-AAAAGAAAACCAACCTAAGGATATACCTTGGGGCC
*
8155783 TATGAGCCTACCTAAGGATATCCTTAG
64 TATGAGCCTACCCAAGGATATCCTTAG
* * * *
8155810 ATCCGTAGGGTTACCCTAAGCACACAGC-AAAGAAAACCAACCTAAGAATATGCCTTAGGGCCTA
1 ATCCGTAGGGTTACCCTAAGCACACAACAAAAGAAAACCAACCTAAGGATATACCTTGGGGCCTA
*
8155874 TGGGCCTACCCAAGGATATCCTTAG
66 TGAGCCTACCCAAGGATATCCTTAG
* * ** *
8155899 ATCCATAGGGTTA-CCTAAGCACATAACAAAAGGGAACCAACCTAAGGACATACCTTGGGGCCTA
1 ATCCGTAGGGTTACCCTAAGCACACAACAAAAGAAAACCAACCTAAGGATATACCTTGGGGCCTA
8155963 T-AGCCTACCCAA-GAGTATCCTTAG
66 TGAGCCTACCCAAGGA-TATCCTTAG
* * * * ** * * *
8155987 ATTCGTAGTGTTACCTTAAGTACACAACAAAAGGGAACTAACCTAAGGATATGCCTTGGGGACAA
1 ATCCGTAGGGTTACCCTAAGCACACAACAAAAGAAAACCAACCTAAGGATATACCTTGGGG-C-C
*
8156052 TATGA--CTACCCAAGGATATACTTA-
64 TATGAGCCTACCCAAGGATATCCTTAG
8156076 AGTCCGTA
1 A-TCCGTA
8156084 AAGTCTTACT
Statistics
Matches: 235, Mismatches: 31, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
87 2 0.01
88 41 0.17
89 138 0.59
90 21 0.09
91 22 0.09
92 11 0.05
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (90 bp):
ATCCGTAGGGTTACCCTAAGCACACAACAAAAGAAAACCAACCTAAGGATATACCTTGGGGCCTA
TGAGCCTACCCAAGGATATCCTTAG
Found at i:8156063 original size:178 final size:178
Alignment explanation
Indices: 8155748--8156075 Score: 453
Period size: 178 Copynumber: 1.8 Consensus size: 178
8155738 GCACACAGCA
* * *
8155748 AAAAGGGAGCCAACCTAAGGATATACCTTGGGGCCTATGAGCCTACCTAAGGATATCCTTAGATC
1 AAAAGGGAACCAACCTAAGGACATACCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGATC
* * * *
8155813 CGTAGGGTTACCCTAAGCACACAGCAAAGAAAACCAACCTAAGAATATGCCTTAGGGCCTATGGG
66 CGTAGGGTTACCCTAAGCACACAACAAAGAAAACCAACCTAAGAATATGCCTTAGGGACAATAGG
* *
8155878 CCTACCCAAGGATATCCTTAGATCCATAGGGTTACCTAAGCACATAAC
131 ACTACCCAAGGATATACTTAGATCCATAGGGTTACCTAAGCACATAAC
8155926 AAAAGGGAACCAACCTAAGGACATACCTTGGGGCCTAT-AGCCTACCCAA-GAGTATCCTTAGAT
1 AAAAGGGAACCAACCTAAGGACATACCTTGGGGCCTATGAGCCTACCCAAGGA-TATCCTTAGAT
* * * * ** * * *
8155989 TCGTAGTGTTACCTTAAGTACACAACAAAAGGGAACTAACCTAAGGATATGCCTTGGGGACAATA
65 CCGTAGGGTTACCCTAAGCACACAAC-AAAGAAAACCAACCTAAGAATATGCCTTAGGGACAATA
*
8156054 TGACTACCCAAGGATATACTTA
129 GGACTACCCAAGGATATACTTA
8156076 AGTCCGTAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
176 2 0.02
177 42 0.33
178 85 0.66
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (178 bp):
AAAAGGGAACCAACCTAAGGACATACCTTGGGGCCTATGAGCCTACCCAAGGATATCCTTAGATC
CGTAGGGTTACCCTAAGCACACAACAAAGAAAACCAACCTAAGAATATGCCTTAGGGACAATAGG
ACTACCCAAGGATATACTTAGATCCATAGGGTTACCTAAGCACATAAC
Found at i:8159502 original size:2 final size:2
Alignment explanation
Indices: 8159488--8159521 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
8159478 ACAATATAAG
8159488 TA TA TA -A TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8159522 AAGTGTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8159792 original size:19 final size:19
Alignment explanation
Indices: 8159764--8159811 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
8159754 TCATTGACCA
* * *
8159764 ATGATATATGTACATGTGT
1 ATGATGTATGGACATATGT
8159783 ATGATGTATGGACATATGT
1 ATGATGTATGGACATATGT
8159802 ATGATGTATG
1 ATGATGTATG
8159812 AATATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (19 bp):
ATGATGTATGGACATATGT
Found at i:8159818 original size:19 final size:19
Alignment explanation
Indices: 8159764--8159818 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
8159754 TCATTGACCA
* * *
8159764 ATGATATATGTACATGTGT
1 ATGATGTATGAACATATGT
*
8159783 ATGATGTATGGACATATGT
1 ATGATGTATGAACATATGT
*
8159802 ATGATGTATGAATATAT
1 ATGATGTATGAACATAT
8159819 ATATATCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.40
Consensus pattern (19 bp):
ATGATGTATGAACATATGT
Found at i:8160046 original size:29 final size:28
Alignment explanation
Indices: 8160008--8160078 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
8159998 ACTTTACAAG
*
8160008 TATAAAGTATAATATATATG-TATATGTA
1 TATAAAGTAT-ATATACATGATATATGTA
*
8160036 TATATAAGTATATATGCATGATATATGTA
1 TATA-AAGTATATATACATGATATATGTA
* *
8160065 CACAAA-TATATATA
1 TATAAAGTATATATA
8160079 TAAAATTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 7 0.19
28 13 0.36
29 16 0.44
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.39
Consensus pattern (28 bp):
TATAAAGTATATATACATGATATATGTA
Found at i:8160467 original size:2 final size:2
Alignment explanation
Indices: 8160460--8160503 Score: 79
Period size: 2 Copynumber: 21.5 Consensus size: 2
8160450 ACTTATGTGA
8160460 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
8160503 A
1 A
8160504 CTATTTATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8160659 original size:21 final size:20
Alignment explanation
Indices: 8160627--8160668 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
8160617 TAAAGAAAAA
8160627 AAATAAAATTATA-AATATTT
1 AAATAAAATTATATAAT-TTT
*
8160647 AAATAAATTTTATATAATTTT
1 AAATAAA-ATTATATAATTTT
8160668 A
1 A
8160669 TAACACCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 9 0.47
22 3 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATAAAATTATATAATTTT
Found at i:8162591 original size:17 final size:17
Alignment explanation
Indices: 8162569--8162609 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
8162559 AACTCTATTA
8162569 AGGTTATGGGATGGAGT
1 AGGTTATGGGATGGAGT
8162586 AGGTTATGGGATGGAGT
1 AGGTTATGGGATGGAGT
8162603 AGGTTAT
1 AGGTTAT
8162610 ACTCCACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (17 bp):
AGGTTATGGGATGGAGT
Found at i:8164756 original size:42 final size:42
Alignment explanation
Indices: 8164693--8164799 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
8164683 GCAATCTTTA
*
8164693 GGTTTTCACTTTAGATATTTCTTTTCTCAAAACGCCCTTTCG
1 GGTTTTCACTTTGGATATTTCTTTTCTCAAAACGCCCTTTCG
* **
8164735 GGTTTTCACTTTGGATCTTTCTTTTCTCAAAGTGCCCTTTCG
1 GGTTTTCACTTTGGATATTTCTTTTCTCAAAACGCCCTTTCG
8164777 GGTTTTCACTTTGGATATTTCTT
1 GGTTTTCACTTTGGATATTTCTT
8164800 CTATTTTCCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49
Consensus pattern (42 bp):
GGTTTTCACTTTGGATATTTCTTTTCTCAAAACGCCCTTTCG
Found at i:8165581 original size:6 final size:6
Alignment explanation
Indices: 8165572--8165630 Score: 66
Period size: 6 Copynumber: 9.8 Consensus size: 6
8165562 TTTCTTTCTT
* * *
8165572 TCTTTC TCTTTC TCTTTC TGTTTC TCTTTC TCTTTT TC-TTC TTTTTC
1 TCTTTC TCTTTC TCTTTC TCTTTC TCTTTC TCTTTC TCTTTC TCTTTC
*
8165619 TTCTTTT TCTTT
1 -TCTTTC TCTTT
8165631 TGTTTTTTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
5 3 0.07
6 37 0.84
7 4 0.09
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (6 bp):
TCTTTC
Found at i:8165616 original size:9 final size:9
Alignment explanation
Indices: 8165593--8165629 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
8165583 CTCTTTCTGT
*
8165593 TTCTCTTTC
1 TTCTTTTTC
8165602 -TCTTTTTC
1 TTCTTTTTC
8165610 TTCTTTTTC
1 TTCTTTTTC
8165619 TTCTTTTTC
1 TTCTTTTTC
8165628 TT
1 TT
8165630 TTGTTTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:8165631 original size:6 final size:6
Alignment explanation
Indices: 8165541--8165641 Score: 55
Period size: 6 Copynumber: 16.3 Consensus size: 6
8165531 TCATTTCTCT
* * * * * *
8165541 TTTTTA TTTTTG TTTTTT TATTTTC TTTCTT- TCTTTC TCTTTC TCTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTT-TTC TTTTTC TTTTTC TTTTTC
* *
8165590 TGTTTCTC TTTCTC TTTTTC TTCTTT- TTCTTC TTTTTC TTTTGT- TTTTTC
1 T-TTT-TC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC TTTT-TC TTTTTC
8165640 TT
1 TT
8165642 CTCTTTTTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 5 0.06
6 54 0.70
7 15 0.19
8 3 0.04
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:8169133 original size:24 final size:24
Alignment explanation
Indices: 8169106--8169154 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
8169096 TATACTTCGG
8169106 AGAAAAG-AAAACAAAACGAAAGAA
1 AGAAAAGCAAAACAAAACG-AAGAA
* *
8169130 AGAAATGCAAAACAAAATGAAGAA
1 AGAAAAGCAAAACAAAACGAAGAA
8169154 A
1 A
8169155 TGTAAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.71, C:0.08, G:0.16, T:0.04
Consensus pattern (24 bp):
AGAAAAGCAAAACAAAACGAAGAA
Found at i:8169140 original size:20 final size:20
Alignment explanation
Indices: 8169117--8169175 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
8169107 GAAAAGAAAA
8169117 CAAAACGAAAGAAAGAAATG
1 CAAAACGAAAGAAAGAAATG
*
8169137 CAAAACAAAATG-AAGAAATG
1 CAAAACGAAA-GAAAGAAATG
* * *
8169157 TAAAATGCAAGAAA-AAATG
1 CAAAACGAAAGAAAGAAATG
8169176 ATTGCCACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 6 0.19
20 25 0.78
21 1 0.03
ACGTcount: A:0.64, C:0.08, G:0.17, T:0.10
Consensus pattern (20 bp):
CAAAACGAAAGAAAGAAATG
Found at i:8174443 original size:23 final size:23
Alignment explanation
Indices: 8174407--8174466 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 23
8174397 ATATTTTTTT
*
8174407 CGAATGACCACATAGGTTTGTCC
1 CGAATGACCGCATAGGTTTGTCC
*
8174430 CGAGTGACCGCATA-GTTTGTCC
1 CGAATGACCGCATAGGTTTGTCC
8174452 CGAATGACCGCATAG
1 CGAATGACCGCATAG
8174467 AGCCCTCGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (23 bp):
CGAATGACCGCATAGGTTTGTCC
Found at i:8174622 original size:21 final size:21
Alignment explanation
Indices: 8174598--8174664 Score: 116
Period size: 21 Copynumber: 3.2 Consensus size: 21
8174588 TCACATATGG
*
8174598 TTCACTTTCATGTATATCACT
1 TTCACTTTCACGTATATCACT
*
8174619 TTCACTTTCACGTATATAACT
1 TTCACTTTCACGTATATCACT
8174640 TTCACTTTCACGTATATCACT
1 TTCACTTTCACGTATATCACT
8174661 TTCA
1 TTCA
8174665 TATATATCCA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.45
Consensus pattern (21 bp):
TTCACTTTCACGTATATCACT
Found at i:8174854 original size:23 final size:22
Alignment explanation
Indices: 8174810--8174892 Score: 71
Period size: 23 Copynumber: 3.7 Consensus size: 22
8174800 ATAATTCGCA
8174810 CCGAAGTG-CCACATA-TTTGTC
1 CCGAAG-GACCACATAGTTTGTC
* *
8174831 CTGAGGGACCACATAGGTTTGTC
1 CCGAAGGACCACATA-GTTTGTC
* * *
8174854 CCGAATGACAACATAGTTTTTTC
1 CCGAAGGACCACATAG-TTTGTC
*
8174877 CCGATGGACCACATAG
1 CCGAAGGACCACATAG
8174893 AACCCTCGAC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.02
21 11 0.23
22 1 0.02
23 35 0.73
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (22 bp):
CCGAAGGACCACATAGTTTGTC
Found at i:8178935 original size:23 final size:23
Alignment explanation
Indices: 8178906--8178965 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
8178896 TATTTTTTCT
*
8178906 GAATGACCACATAGGTTTGTCCC
1 GAATGACCAAATAGGTTTGTCCC
*
8178929 GAATGACCAAATAGTTTTGTCCC
1 GAATGACCAAATAGGTTTGTCCC
* *
8178952 AAATGACCATATAG
1 GAATGACCAAATAG
8178966 AACCCTCGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (23 bp):
GAATGACCAAATAGGTTTGTCCC
Found at i:8179121 original size:21 final size:21
Alignment explanation
Indices: 8179097--8179163 Score: 125
Period size: 21 Copynumber: 3.2 Consensus size: 21
8179087 TCACATATGG
*
8179097 TTCATTTTCACGTATATCACT
1 TTCACTTTCACGTATATCACT
8179118 TTCACTTTCACGTATATCACT
1 TTCACTTTCACGTATATCACT
8179139 TTCACTTTCACGTATATCACT
1 TTCACTTTCACGTATATCACT
8179160 TTCA
1 TTCA
8179164 TATATATCCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.24, C:0.27, G:0.04, T:0.45
Consensus pattern (21 bp):
TTCACTTTCACGTATATCACT
Found at i:8179352 original size:23 final size:22
Alignment explanation
Indices: 8179316--8179390 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 22
8179306 CACCAAAGTG
*
8179316 CCACATA-TTTGTCCCGAGGGA
1 CCACATAGTTTGTCCCGAAGGA
**
8179337 CCACATAGGTTTGTCCCGAATAA
1 CCACATA-GTTTGTCCCGAAGGA
* *
8179360 CAACATAGTTTTTTCCCGAAGGA
1 CCACATAG-TTTGTCCCGAAGGA
8179383 CCACATAG
1 CCACATAG
8179391 AACCCTCGAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 7 0.16
22 1 0.02
23 35 0.81
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (22 bp):
CCACATAGTTTGTCCCGAAGGA
Found at i:8183399 original size:23 final size:23
Alignment explanation
Indices: 8183310--8183407 Score: 96
Period size: 23 Copynumber: 4.3 Consensus size: 23
8183300 ATAATTTGCA
*
8183310 CCGAAGTG-CCACATA--TTTGTG
1 CCGAA-TGACCACATAGGTTTGTC
* *
8183331 CCGAAGGACCACATAGGTTTGTG
1 CCGAATGACCACATAGGTTTGTC
*
8183354 TCGAATGACCACATAGGTTTGTC
1 CCGAATGACCACATAGGTTTGTC
*
8183377 CCGAAAT-ACCACATAGTTTTGTC
1 CCG-AATGACCACATAGGTTTGTC
*
8183400 CTGAATGA
1 CCGAATGA
8183408 TCAAATAGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 12 0.18
22 3 0.05
23 46 0.71
24 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
CCGAATGACCACATAGGTTTGTC
Found at i:8183556 original size:6 final size:6
Alignment explanation
Indices: 8183547--8183605 Score: 64
Period size: 6 Copynumber: 8.8 Consensus size: 6
8183537 TCACATATGG
8183547 TTCACT TTCACAT ATATCACT TTCACT TTCACT TTCACGT ATATCACT
1 TTCACT TTCAC-T -T-TCACT TTCACT TTCACT TTCAC-T -T-TCACT
8183595 TTCACT TTCAC
1 TTCACT TTCAC
8183606 GTATATCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
6 31 0.66
7 4 0.09
8 4 0.09
9 8 0.17
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.44
Consensus pattern (6 bp):
TTCACT
Found at i:8183571 original size:21 final size:21
Alignment explanation
Indices: 8183569--8183620 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
8183559 TATATCACTT
8183569 TCACTTTCACTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
8183590 TCACTTTCACTTTCACGTATA
1 TCACTTTCACTTTCACGTATA
*
8183611 TCATTTTCAC
1 TCACTTTCAC
8183621 GTATATCCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.29, G:0.04, T:0.44
Consensus pattern (21 bp):
TCACTTTCACTTTCACGTATA
Found at i:8183620 original size:27 final size:27
Alignment explanation
Indices: 8183547--8183605 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
8183537 TCACATATGG
8183547 TTCACTTTCACATATATCACTTTCACT
1 TTCACTTTCACATATATCACTTTCACT
*
8183574 TTCACTTTCACGTATATCACTTTCACT
1 TTCACTTTCACATATATCACTTTCACT
8183601 TTCAC
1 TTCAC
8183606 GTATATCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.44
Consensus pattern (27 bp):
TTCACTTTCACATATATCACTTTCACT
Found at i:8183810 original size:23 final size:23
Alignment explanation
Indices: 8183780--8183845 Score: 96
Period size: 23 Copynumber: 2.9 Consensus size: 23
8183770 GTGCCACAAA
8183780 TTTGTCCCGAAGGACCACATAGG
1 TTTGTCCCGAAGGACCACATAGG
* * *
8183803 TTTGTCCCGAATGACAACATAGT
1 TTTGTCCCGAAGGACCACATAGG
*
8183826 TTTGTCCTGAAGGACCACAT
1 TTTGTCCCGAAGGACCACAT
8183846 TGAACACTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTGTCCCGAAGGACCACATAGG
Found at i:8186925 original size:11 final size:11
Alignment explanation
Indices: 8186909--8186939 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8186899 ATTAGGATAG
8186909 TATTTTATTAT
1 TATTTTATTAT
*
8186920 TATTTTATTGT
1 TATTTTATTAT
8186931 TATTTTATT
1 TATTTTATT
8186940 CATCATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:8187754 original size:23 final size:22
Alignment explanation
Indices: 8187692--8187764 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
8187682 CACCACAGCT
*
8187692 CACATAATTTG-CACCGAAGTG-C
1 CACATAGTTTGTC-CCGAA-TGAC
8187714 CACATA-TTTGTCCCGAATGAC
1 CACATAGTTTGTCCCGAATGAC
* *
8187735 CACATAGTGTTGTCCGGAATGAT
1 CACATAGT-TTGTCCCGAATGAC
8187758 CACATAG
1 CACATAG
8187765 AACCCTCGAC
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.04
21 16 0.36
22 8 0.18
23 19 0.42
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (22 bp):
CACATAGTTTGTCCCGAATGAC
Found at i:8187917 original size:15 final size:15
Alignment explanation
Indices: 8187897--8187945 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
8187887 CACATATGGT
8187897 TCACTTTCACATATA
1 TCACTTTCACATATA
*
8187912 TCACTTTCAC---TC
1 TCACTTTCACATATA
*
8187924 CCACTTTCACATATA
1 TCACTTTCACATATA
8187939 TCACTTT
1 TCACTTT
8187946 AAGTTTCACT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 10 0.37
15 17 0.63
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.41
Consensus pattern (15 bp):
TCACTTTCACATATA
Found at i:8187955 original size:27 final size:27
Alignment explanation
Indices: 8187896--8187967 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
8187886 TCACATATGG
*
8187896 TTCACTTTCACATATATCACTTTCACT
1 TTCACTTTCACATATATCACTTTAACT
** *
8187923 CCCACTTTCACATATATCACTTTAAGT
1 TTCACTTTCACATATATCACTTTAACT
*
8187950 TTCACTTTCACGTATATC
1 TTCACTTTCACATATATC
8187968 CACATAAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (27 bp):
TTCACTTTCACATATATCACTTTAACT
Found at i:8188146 original size:23 final size:23
Alignment explanation
Indices: 8188120--8188187 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
8188110 GTGCCATATA
*
8188120 TTTGTCCCGAAGGACCACATAGG
1 TTTGTCCTGAAGGACCACATAGG
* ** *
8188143 TTTGTCCTGAATGAAAACATAGT
1 TTTGTCCTGAAGGACCACATAGG
8188166 TTTGTCCTGAAGGACCACATAG
1 TTTGTCCTGAAGGACCACATAG
8188188 AACCCTCGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTGTCCTGAAGGACCACATAGG
Found at i:8188995 original size:21 final size:21
Alignment explanation
Indices: 8188953--8189015 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 21
8188943 CTTATCCTTG
*
8188953 GTATCGATAC--CTTTATACCA
1 GTATCGATACTTCTTCA-ACCA
8188973 GTATCGATACTTCTTCAACCA
1 GTATCGATACTTCTTCAACCA
* * *
8188994 GTATTGATAATT-TTCATCCA
1 GTATCGATACTTCTTCAACCA
8189014 GT
1 GT
8189016 TCACACTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 19 0.51
21 14 0.38
22 4 0.11
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (21 bp):
GTATCGATACTTCTTCAACCA
Found at i:8189014 original size:20 final size:21
Alignment explanation
Indices: 8188969--8189015 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
8188959 ATACCTTTAT
*
8188969 ACCAGTATCGATACTTCTTCA
1 ACCAGTATCGATAATTCTTCA
*
8188990 ACCAGTATTGATAATT-TTCA
1 ACCAGTATCGATAATTCTTCA
*
8189010 TCCAGT
1 ACCAGT
8189016 TCACACTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (21 bp):
ACCAGTATCGATAATTCTTCA
Done.