Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008094.1 Hibiscus syriacus cultivar Beakdansim tig00110610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9952466
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 43
Found at i:645934 original size:228 final size:228
Alignment explanation
Indices: 645538--646254 Score: 1346
Period size: 228 Copynumber: 3.1 Consensus size: 228
645528 GTTATATTGT
* * *
645538 AAAGTATCTATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTAGTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
645602 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
*
645667 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
*
645732 AAAAATTGAAACATAAATTACATAACTTTTAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
645765 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* *
645830 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATTAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
645895 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
645960 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
645993 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
*
646058 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
*
646123 TAATTTTTTGTGTAAATGAAATTATTAAATTATTATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
646188 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
646221 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
646255 GTATAAAAGT
Statistics
Matches: 478, Mismatches: 11, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
227 45 0.09
228 433 0.91
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:646326 original size:20 final size:19
Alignment explanation
Indices: 646303--646349 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
646293 CGATATACCA
* *
646303 GGTAAAAATATGATAAAGCT
1 GGTAAAAA-ATGATAAAACC
646323 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
646343 GGTAAAA
1 GGTAAAA
646350 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:646503 original size:20 final size:19
Alignment explanation
Indices: 646475--646530 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
646465 GATCCACAAC
*
646475 GATATAACCGGTAAAAATAT
1 GATAAAACCGGTAAAAA-AT
*
646495 GATAAAACCGGTATCAAAAT
1 GATAAAACCGGTA-AAAAAT
646515 GATAAAACCGGTAAAA
1 GATAAAACCGGTAAAA
646531 TGATACCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (19 bp):
GATAAAACCGGTAAAAAAT
Found at i:646532 original size:17 final size:19
Alignment explanation
Indices: 646493--646535 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
646483 CGGTAAAAAT
646493 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
646513 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
646530 ATGATA
1 ATGATA
646536 CCAGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:648764 original size:21 final size:21
Alignment explanation
Indices: 648740--648783 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
648730 AAGACAATCA
648740 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
648761 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
648782 AG
1 AG
648784 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:648859 original size:33 final size:33
Alignment explanation
Indices: 648817--648882 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
648807 AAATAGATGG
*
648817 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
648850 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
648883 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:649123 original size:18 final size:17
Alignment explanation
Indices: 649076--649124 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
649066 TGAAGAAGAA
*
649076 AAGAGGGAGG-AGGAAG
1 AAGAAGGAGGAAGGAAG
*
649092 AAGAA-GA-GATGGAAG
1 AAGAAGGAGGAAGGAAG
649107 AAGTAAGGAGGAAGGAAG
1 AAG-AAGGAGGAAGGAAG
649125 TCAATGTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.38
16 6 0.23
17 2 0.08
18 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.47, T:0.04
Consensus pattern (17 bp):
AAGAAGGAGGAAGGAAG
Found at i:649124 original size:15 final size:14
Alignment explanation
Indices: 649083--649125 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
649073 GAAAAGAGGG
649083 AGGAGGAAGAAG-A
1 AGGAGGAAGAAGTA
649096 AGAGATGGAAGAAGTA
1 AG-GA-GGAAGAAGTA
649112 AGGAGGAAGGAAGT
1 AGGAGGAA-GAAGT
649126 CAATGTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.08
14 6 0.23
15 15 0.58
16 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.44, T:0.07
Consensus pattern (14 bp):
AGGAGGAAGAAGTA
Found at i:650085 original size:4 final size:4
Alignment explanation
Indices: 650076--650100 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
650066 TAAGAGATTG
650076 GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT G
650101 AAAGGACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:650704 original size:19 final size:19
Alignment explanation
Indices: 650680--650728 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
650670 AATGTAGGGT
650680 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
650699 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
650718 TATTTTTGTAT
1 TAATTTTGTAT
650729 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:651193 original size:199 final size:198
Alignment explanation
Indices: 650847--651538 Score: 1276
Period size: 199 Copynumber: 3.5 Consensus size: 198
650837 CAATATGGCC
* * *
650847 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATACCAAAAACATCGAAAA
1 AACA-GGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
650912 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
64 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
650977 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
129 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
651042 TGGAA
194 TGGAA
*
651047 AATATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACA-GGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
651112 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACGAGTTTACCGGTTTTATGAGAG
65 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
651177 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
130 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
651242 GGAA
195 GGAA
651246 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACA-GGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
651311 TAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
65 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
651376 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
130 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
651441 GGAA
195 GGAA
*
651445 AACAGTGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAG-GTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
651510 CAAAAGTATAATGTAATATGTAATTTTTC
65 CAAAAGTATAATGTAATATGTAATTTTTC
651539 TATTCGTGTG
Statistics
Matches: 479, Mismatches: 12, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
198 1 0.00
199 421 0.88
200 57 0.12
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (198 bp):
AACAGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCC
AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAGA
ATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAATG
GAA
Found at i:652908 original size:183 final size:182
Alignment explanation
Indices: 652633--653125 Score: 851
Period size: 183 Copynumber: 2.7 Consensus size: 182
652623 GCAATGCTAT
*
652633 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
652698 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTTAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTGTCGACA
*
652763 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
652816 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
652881 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTGTCGACA
*
652946 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
* * * * * *
652999 TGGTATAAATATACCGATTTTACGAGCAAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
653064 GTGTCGATACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGTGTCG
653126 GTAATTTTAA
Statistics
Matches: 295, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
183 291 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTGTCGACAT
TTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:655268 original size:29 final size:29
Alignment explanation
Indices: 655236--655301 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
655226 AAAGTTTGAA
*
655236 AATTTAGATACCTATTTTGACCAAAAAAT
1 AATTTAGATACCTATTTTAACCAAAAAAT
* **
655265 AATTTTAGGTATTTATTTTAACCAAAAAAT
1 AA-TTTAGATACCTATTTTAACCAAAAAAT
*
655295 ACTTTAG
1 AATTTAG
655302 GTACTTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (29 bp):
AATTTAGATACCTATTTTAACCAAAAAAT
Found at i:655272 original size:30 final size:30
Alignment explanation
Indices: 655238--655295 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
655228 AGTTTGAAAA
*
655238 TTTAGATACCTATTTTGACCAAAAAATAAT
1 TTTAGATACCTATTTTAACCAAAAAATAAT
* **
655268 TTTAGGTATTTATTTTAACCAAAAAATA
1 TTTAGATACCTATTTTAACCAAAAAATA
655296 CTTTAGGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTAGATACCTATTTTAACCAAAAAATAAT
Found at i:655302 original size:29 final size:30
Alignment explanation
Indices: 655248--655304 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
655238 TTTAGATACC
* *
655248 TATTTTGACCAAAAAATAATTTTAGGTATT
1 TATTTTAACCAAAAAATAACTTTAGGTATT
655278 TATTTTAACCAAAAAAT-ACTTTAGGTA
1 TATTTTAACCAAAAAATAACTTTAGGTA
655305 CTTAAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (30 bp):
TATTTTAACCAAAAAATAACTTTAGGTATT
Found at i:655707 original size:11 final size:11
Alignment explanation
Indices: 655691--655715 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
655681 AGGAAAGACG
655691 GGTTAATATAC
1 GGTTAATATAC
655702 GGTTAATATAC
1 GGTTAATATAC
655713 GGT
1 GGT
655716 AGTACCGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (11 bp):
GGTTAATATAC
Found at i:656358 original size:228 final size:228
Alignment explanation
Indices: 655962--656675 Score: 1328
Period size: 228 Copynumber: 3.1 Consensus size: 228
655952 GTTATATTGT
* * *
655962 AAAGTATCTATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTAGTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
656026 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
*
656091 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
*
656156 AAAAATTGAAACATAAATTACATAACTTTTAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
656189 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* *
656254 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATTAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
656319 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
656384 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
656417 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
*
656482 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
656547 TAATTTTTTGTGTAAATGAAATTATTAAA-T--TATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
656609 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
656642 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
656676 GTATAAAAGT
Statistics
Matches: 476, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
225 99 0.21
227 46 0.10
228 331 0.70
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:656747 original size:20 final size:19
Alignment explanation
Indices: 656724--656770 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
656714 CGATATACCA
* *
656724 GGTAAAAATATGATAAAGCT
1 GGTAAAAA-ATGATAAAACC
656744 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
656764 GGTAAAA
1 GGTAAAA
656771 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:656924 original size:20 final size:19
Alignment explanation
Indices: 656896--656951 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
656886 GATCCACAAC
*
656896 GATATAACCGGTAAAAATAT
1 GATAAAACCGGTAAAAA-AT
*
656916 GATAAAACCGGTATCAAAAT
1 GATAAAACCGGTA-AAAAAT
656936 GATAAAACCGGTAAAA
1 GATAAAACCGGTAAAA
656952 TGATACCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (19 bp):
GATAAAACCGGTAAAAAAT
Found at i:656953 original size:17 final size:19
Alignment explanation
Indices: 656914--656956 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
656904 CGGTAAAAAT
656914 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
656934 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
656951 ATGATA
1 ATGATA
656957 CCAGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:659185 original size:21 final size:21
Alignment explanation
Indices: 659161--659204 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
659151 AAGACAATCA
659161 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
659182 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
659203 AG
1 AG
659205 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:659280 original size:33 final size:33
Alignment explanation
Indices: 659238--659303 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
659228 AAATAGATGG
*
659238 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
659271 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
659304 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:659546 original size:18 final size:17
Alignment explanation
Indices: 659499--659547 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
659489 TGAAGAAGAA
*
659499 AAGAGGGAGG-AGGAAG
1 AAGAAGGAGGAAGGAAG
*
659515 AAGAA-GA-GATGGAAG
1 AAGAAGGAGGAAGGAAG
659530 AAGTAAGGAGGAAGGAAG
1 AAG-AAGGAGGAAGGAAG
659548 TCAATGTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.38
16 6 0.23
17 2 0.08
18 7 0.27
ACGTcount: A:0.49, C:0.00, G:0.47, T:0.04
Consensus pattern (17 bp):
AAGAAGGAGGAAGGAAG
Found at i:659547 original size:15 final size:14
Alignment explanation
Indices: 659506--659548 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
659496 GAAAAGAGGG
659506 AGGAGGAAGAAG-A
1 AGGAGGAAGAAGTA
659519 AGAGATGGAAGAAGTA
1 AG-GA-GGAAGAAGTA
659535 AGGAGGAAGGAAGT
1 AGGAGGAA-GAAGT
659549 CAATGTCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.08
14 6 0.23
15 15 0.58
16 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.44, T:0.07
Consensus pattern (14 bp):
AGGAGGAAGAAGTA
Found at i:660510 original size:4 final size:4
Alignment explanation
Indices: 660501--660533 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
660491 TAAGAGATTG
660501 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
660534 AAAGGACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:661137 original size:19 final size:19
Alignment explanation
Indices: 661113--661161 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
661103 AATGTAGGGT
661113 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
661132 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
661151 TATTTTTGTAT
1 TAATTTTGTAT
661162 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:661662 original size:199 final size:199
Alignment explanation
Indices: 661280--661970 Score: 1294
Period size: 199 Copynumber: 3.5 Consensus size: 199
661270 CAATATGGCC
* * *
661280 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATACCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
661345 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
661410 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATA-TTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
661474 TGGAA
195 TGGAA
* *
661479 AATATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
661544 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACGAGTTTACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
661609 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
661674 GGAA
196 GGAA
661678 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
661743 TAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
661808 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
661873 GGAA
196 GGAA
*
661877 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
661942 CAAAAGTATAATGTAATATGTAATTTTTC
66 CAAAAGTATAATGTAATATGTAATTTTTC
661971 TATTCGTGTG
Statistics
Matches: 479, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
198 113 0.24
199 366 0.76
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (199 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
GGAA
Found at i:663336 original size:183 final size:182
Alignment explanation
Indices: 663061--663553 Score: 851
Period size: 183 Copynumber: 2.7 Consensus size: 182
663051 GCAATGCTAT
*
663061 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
663126 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTTAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTGTCGACA
*
663191 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
663244 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
663309 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTGTCGACA
*
663374 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
* * * * * *
663427 TGGTATAAATATACCGATTTTACGAGCAAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
663492 GTGTCGATACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGTGTCG
663554 GTAATTTTAA
Statistics
Matches: 295, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
183 291 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTGTCGACAT
TTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:666055 original size:25 final size:25
Alignment explanation
Indices: 666021--666085 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
666011 TTATCATTAA
666021 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
666046 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
666071 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
666086 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:666463 original size:23 final size:23
Alignment explanation
Indices: 666432--666504 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
666422 ATAGGTAAAC
*
666432 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
666455 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
666478 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
666501 ATAT
1 ATAT
666505 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:666946 original size:30 final size:30
Alignment explanation
Indices: 666912--666969 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
666902 TTTCAAATTC
666912 ATTTCATATGT-AATTGGAGTTTGAATTTAA
1 ATTTCA-ATGTGAATTGGAGTTTGAATTTAA
* * *
666942 ATTTCAATTTGAGTTTGAGTTTGAATTT
1 ATTTCAATGTGAATTGGAGTTTGAATTT
666970 CAATATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.50
Consensus pattern (30 bp):
ATTTCAATGTGAATTGGAGTTTGAATTTAA
Found at i:666950 original size:24 final size:24
Alignment explanation
Indices: 666923--666973 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
666913 TTTCATATGT
666923 AATTGGAGTTTGAATTTAAATTTC
1 AATTGGAGTTTGAATTTAAATTTC
* * *
666947 AATTTGAGTTTGAGTTTGAATTTC
1 AATTGGAGTTTGAATTTAAATTTC
666971 AAT
1 AAT
666974 ATATATTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (24 bp):
AATTGGAGTTTGAATTTAAATTTC
Found at i:667731 original size:23 final size:23
Alignment explanation
Indices: 667700--667772 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
667690 ATAGGTAAAA
*
667700 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
667723 ATATAATGTAATAAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
667746 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
667769 ATAT
1 ATAT
667773 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:668161 original size:23 final size:23
Alignment explanation
Indices: 668130--668202 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
668120 ATAGGTAAAA
*
668130 ATATGATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
668153 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
* *
668176 ATATAATGTAATATGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
668199 ATAT
1 ATAT
668203 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 42 0.95
24 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:668300 original size:430 final size:431
Alignment explanation
Indices: 667497--668981 Score: 2827
Period size: 430 Copynumber: 3.5 Consensus size: 431
667487 GTTAATGTTG
667497 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
667561 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
667626 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
667691 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
667756 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
* *
667821 TGGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAAATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
667886 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
667927 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
667991 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
668056 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
* *
668121 TAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
* *
668186 ATATGTAGTGGTTATATTGTAAAGTGTTTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
668251 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
668316 CGTCTAATGATTTATTTTTTACGTTACG--ATATA-TATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
668354 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
668419 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
668484 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
668549 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
*
668614 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
668679 TGGAAAACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
668744 CTTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
668785 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
668850 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
668915 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
668980 TA
196 TA
668982 TAATGTAATA
Statistics
Matches: 1034, Mismatches: 16, Indels: 9
0.98 0.02 0.01
Matches are distributed among these distances:
427 43 0.04
428 375 0.36
429 3 0.00
430 412 0.40
431 201 0.19
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (431 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:668589 original size:23 final size:23
Alignment explanation
Indices: 668558--668630 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
668548 ATAGGTAAAA
*
668558 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
668581 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
668604 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
668627 ATAT
1 ATAT
668631 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:676789 original size:2 final size:2
Alignment explanation
Indices: 676782--676823 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
676772 CATTCTGTTA
676782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
676824 TGTATTTTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:681028 original size:26 final size:26
Alignment explanation
Indices: 680984--681040 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
680974 AAAATATTAT
680984 ATACCCAATTGCACCAAAAAAGTTAA
1 ATACCCAATTGCACCAAAAAAGTTAA
* * *
681010 GTACCCAATT-CTACTAAAAAATTTAA
1 ATACCCAATTGC-ACCAAAAAAGTTAA
681036 ATACC
1 ATACC
681041 AAAATTGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (26 bp):
ATACCCAATTGCACCAAAAAAGTTAA
Found at i:681312 original size:31 final size:31
Alignment explanation
Indices: 681274--681333 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
681264 TGGCGCATGC
681274 AAAGCTTCATCCTCTCACCACAGCTCGTAGA
1 AAAGCTTCATCCTCTCACCACAGCTCGTAGA
*
681305 AAAGCTTCATCCTCTCGCCACAGCTCGTA
1 AAAGCTTCATCCTCTCACCACAGCTCGTA
681334 TAGAACACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.37, G:0.13, T:0.23
Consensus pattern (31 bp):
AAAGCTTCATCCTCTCACCACAGCTCGTAGA
Found at i:681949 original size:2 final size:2
Alignment explanation
Indices: 681944--682004 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
681934 ATAAAACTTT
681944 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
681986 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
682005 TAATAAAGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:685184 original size:46 final size:45
Alignment explanation
Indices: 685126--685231 Score: 153
Period size: 45 Copynumber: 2.3 Consensus size: 45
685116 TGCACATACT
685126 ATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCATTTG
*
685172 ATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTT
1 ATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTG
*
685217 ATACATCGATGCACT
1 ATGCATCGATGCACT
685232 AAGGGTCCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
45 32 0.57
46 21 0.38
47 3 0.05
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (45 bp):
ATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTG
Found at i:691076 original size:43 final size:43
Alignment explanation
Indices: 691004--691096 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 43
690994 GTGCTTAATG
* *
691004 CATCGATACACCTAACAGTGCATCGATGCA-TCCTTGAATGTA
1 CATCGATACACCTAACAGTGCACCGATGCACGCCTTGAATGTA
*
691046 CATCGATACACCATAA-AGGTGCACCGATGCACGCCTTGAATGTC
1 CATCGATACACC-TAACA-GTGCACCGATGCACGCCTTGAATGTA
691090 CATCGAT
1 CATCGAT
691097 GCACAAGGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
42 13 0.29
43 15 0.33
44 17 0.38
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
CATCGATACACCTAACAGTGCACCGATGCACGCCTTGAATGTA
Found at i:692486 original size:19 final size:19
Alignment explanation
Indices: 692459--692501 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
692449 TGTCAAAACA
*
692459 TTAGCTTATGGATGTCTTC
1 TTAGTTTATGGATGTCTTC
692478 TTAGTTTATGGATGTCTTC
1 TTAGTTTATGGATGTCTTC
692497 TTAGT
1 TTAGT
692502 AACCTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.12, G:0.21, T:0.51
Consensus pattern (19 bp):
TTAGTTTATGGATGTCTTC
Found at i:693818 original size:65 final size:60
Alignment explanation
Indices: 693719--693900 Score: 173
Period size: 56 Copynumber: 3.0 Consensus size: 60
693709 ATGCACCAAT
* ** *
693719 CCATGCATCGATGCAC-CATGGAATAAATTG-AACATCGAATGCATTTCATGCACCGATGCA
1 CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATGCATTTCATGCATCGATGCA
*
693779 CATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCATTTGATGCATC-A-G
1 C---C-ATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCATTTCATGCATCGATG
693840 --
59 CA
*
693840 CCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTTATGCATCGATGCA
1 CCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTCATGCATCGATGCA
693900 C
1 C
693901 TCTTAGTGCA
Statistics
Matches: 102, Mismatches: 5, Indels: 30
0.74 0.04 0.22
Matches are distributed among these distances:
56 25 0.25
57 22 0.22
58 5 0.05
60 2 0.02
61 1 0.01
62 1 0.01
63 5 0.05
64 16 0.16
65 25 0.25
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (60 bp):
CCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTCATGCATCGATGCA
Found at i:693826 original size:56 final size:56
Alignment explanation
Indices: 693766--693883 Score: 136
Period size: 57 Copynumber: 2.1 Consensus size: 56
693756 AATGCATTTC
*
693766 ATGCA-CCGATGCA-CATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGA
1 ATGCATCCGATGCATCA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGA
** *
693822 ATGCATTTGATGCATCAGCCATGCATCGATGCACTCAGGCTATTTTGAAACATCGA
1 ATGCATCCGATGCATCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGA
693878 ATGCAT
1 ATGCAT
693884 TTTATGCATC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
56 21 0.39
57 28 0.52
58 5 0.09
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (56 bp):
ATGCATCCGATGCATCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGA
Found at i:696951 original size:32 final size:31
Alignment explanation
Indices: 696893--696952 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
696883 CTACAAATTT
**
696893 TAAATTATTATATATTTTAATTTTTTATTGA
1 TAAATTATTATATATTTTAAAATTTTATTGA
* *
696924 TAAATTATTTTCATCTTTTAAAATTTTAT
1 TAAATTATTAT-ATATTTTAAAATTTTAT
696953 AAATTTGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 10 0.42
32 14 0.58
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (31 bp):
TAAATTATTATATATTTTAAAATTTTATTGA
Found at i:696958 original size:25 final size:24
Alignment explanation
Indices: 696930--696988 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
696920 TTGATAAATT
696930 ATTTTCATCTTT-TAAAATTTTATAA
1 ATTTT-ATCTTTCTAAAATTTTA-AA
696955 ATTTGT-TCTTTCCTAAAATTTTAAA
1 ATTT-TATCTTT-CTAAAATTTTAAA
696980 ATTTTATCT
1 ATTTTATCT
696989 CTCAATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
24 6 0.20
25 13 0.43
26 11 0.37
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTTATCTTTCTAAAATTTTAAA
Found at i:703506 original size:64 final size:63
Alignment explanation
Indices: 703401--703524 Score: 194
Period size: 64 Copynumber: 2.0 Consensus size: 63
703391 TAGTTATGTT
* *
703401 ATATCATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATAAA
1 ATATCATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAACACTTATATAATAAA
* * *
703464 ATATGCATTTAACCGGAAATATTATCAAGTATAATAACATATTAGGTAACACTTATATAAT
1 ATAT-CATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAACACTTATATAAT
703525 GTAATACGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
63 4 0.07
64 51 0.93
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (63 bp):
ATATCATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAACACTTATATAATAAA
Found at i:703541 original size:87 final size:87
Alignment explanation
Indices: 703445--703631 Score: 320
Period size: 87 Copynumber: 2.1 Consensus size: 87
703435 AACATATTAG
* * * *
703445 GTAGCGCTTATATAATAAAATATGCATTTAACCGGAAATATTATCAAGTATAATAACATATTAGG
1 GTAGCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGA
703510 TAACACTTATATAATGTAATAC
66 TAACACTTATATAATGTAATAC
703532 GTAGCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGA
1 GTAGCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGA
* *
703597 TAACGCTTATATAATGTAATAG
66 TAACACTTATATAATGTAATAC
703619 GTAGCGCTTATAT
1 GTAGCGCTTATAT
703632 TGACCTATTT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 94 1.00
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.33
Consensus pattern (87 bp):
GTAGCGCTTATATAATAAAATAGGCATTTAACCAGAAATATTATCAAGTACAATAACATATTAGA
TAACACTTATATAATGTAATAC
Found at i:707252 original size:200 final size:200
Alignment explanation
Indices: 706592--708559 Score: 3269
Period size: 200 Copynumber: 9.8 Consensus size: 200
706582 AGACATTTGG
* * * *
706592 TTATAATTATGTTTTTTGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGAAACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* *
706657 TGCACTTGGTTTTTAAAATACAATCTGGACAATATGTATCAACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* *
706722 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
706787 TTACA
196 TTACA
* *
706792 TTATAATTATGTTTTTCAATATTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* *
706857 CGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCAACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
706922 CTTTTTGTA-ACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
706986 TTACA
196 TTACA
*
706991 TTATAATTATGTTTTTCAATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
707056 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* **
707121 CTTTTTGTACACCTGTTTTCTCAAAAACTTGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
707186 TTACA
196 TTACA
* * *
707191 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATAGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* * *
707256 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCCACTTTTTGTATTTGTGTCTATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* * * *
707321 CTTTTTGTACACATGTTTTCTCAAAAACTGGTATATCTAGACCGATTACATTAATAATTTATCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
707386 TTACA
196 TTACA
* * *
707391 TTATAATTATG-TTTTCGATGTTTTCGGGATCGACACTTGTTATAAACGTATCGATAATTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* * * *
707455 TGCACTTGGTTTTTAAAATACAATCTAGACAAGATGTATTGACACTTTTTTTATTTATGTCAATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* *
707520 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
707585 TTACA
196 TTACA
*
707590 TTATAATTATGTTTTTCGATGTTTTCGAGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* *
707655 TGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTAGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
707720 CTTTTTATACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
707785 TTACA
196 TTACA
707790 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
707855 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
707920 CTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
707985 TTACA
196 TTACA
* * * * * *
707990 TTATAATTATATTTTTCGTTATTTTCGGGATCGACACTTGTTTTAAACGTATCGACACTTTATTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* * * *
708055 TGCACTTGGTTTTTAAAATACAATCTGAACAAAATGTATTGACACTTGTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
708120 CTTGTTT-TACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCT
131 CTT-TTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCT
708184 ATTACA
195 ATTACA
* * *
708190 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACGCTTGTTTTAAACGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
*
708255 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTGGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* * *
708320 CTTTTTGTACACCTGTTTTTCACAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCT
131 CTTTTTGTACACATG-TTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCT
708385 ATTACA
195 ATTACA
* * * * *
708391 TTATAATTATGTTTTTCGATGTTTT-GCGAAGCGACACTCGTTTTAAATGTATCGACACTTTATT
1 TTATAATTATGTTTTTCGATGTTTTCG-GGATCGACACTTGTTATAAATGTATCGACACTTTGTT
*
708455 GTGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTTATTTGTGTCGA
65 GTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACAC-TTTTTTTATTTGTGTCGA
* **
708520 TACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTT
129 TACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTT
708560 GAAAAGGGTA
Statistics
Matches: 1664, Mismatches: 97, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
199 379 0.23
200 1074 0.65
201 177 0.11
202 34 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (200 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
TTACA
Found at i:707414 original size:399 final size:400
Alignment explanation
Indices: 706592--708559 Score: 3278
Period size: 399 Copynumber: 4.9 Consensus size: 400
706582 AGACATTTGG
* * * *
706592 TTATAATTATGTTTTTTGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGAAACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* *
706657 TGCACTTGGTTTTTAAAATACAATCTGGACAATATGTATCAACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
706722 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* *
706787 TTACATTATAATTATGTTTTTCAATATTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
196 TTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
* *
706852 TGTTGCGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCAACACTTTTTTTATTTGTGT
261 TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
*
706917 CGATACTTTTTGTA-ACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
326 CGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
706981 ACCTATTACA
391 ACCTATTACA
*
706991 TTATAATTATGTTTTTCAATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
707056 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* ** *
707121 CTTTTTGTACACCTGTTTTCTCAAAAACTTGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* * *
707186 TTACATTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATAGACACTT
196 TTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
* *
707251 TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCCACTTTTTGTATTTGTGT
261 TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
* * * *
707316 CTATACTTTTTGTACACATGTTTTCTCAAAAACTGGTATATCTAGACCGATTACATTAATAATTT
326 CGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
*
707381 ATCTATTACA
391 ACCTATTACA
* * *
707391 TTATAATTATG-TTTTCGATGTTTTCGGGATCGACACTTGTTATAAACGTATCGATAATTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
* * * *
707455 TGCACTTGGTTTTTAAAATACAATCTAGACAAGATGTATTGACACTTTTTTTATTTATGTCAATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
707520 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
*
707585 TTACATTATAATTATGTTTTTCGATGTTTTCGAGATCGACACTTGTTATAAATGTATCGACACTT
196 TTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
*
707650 TGTTGTGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
261 TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
* *
707715 AGATACTTTTTATACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
326 CGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
707780 ACCTATTACA
391 ACCTATTACA
707790 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
707855 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* *
707920 CTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* * * * *
707985 TTACATTATAATTATATTTTTCGTTATTTTCGGGATCGACACTTGTTTTAAACGTATCGACACTT
196 TTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
* * * * *
708050 TATTGTGCACTTGGTTTTTAAAATACAATCTGAACAAAATGTATTGACACTTGTTTTATTTGTGT
261 TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
708115 CGATACTTGTTT-TACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATT
326 CGATACTT-TTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATT
708179 TACCTATTACA
390 TACCTATTACA
* * *
708190 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACGCTTGTTTTAAACGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
*
708255 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTGGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* *
708320 CTTTTTGTACACCTGTTTTTCACAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCT
131 CTTTTTGTACACATG-TTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCT
* * * *
708385 ATTACATTATAATTATGTTTTTCGATGTTTT-GCGAAGCGACACTCGTTTTAAATGTATCGACAC
195 ATTACATTATAATTATGTTTTTCGATGTTTTCG-GGATCGACACTTGTTATAAATGTATCGACAC
* *
708449 TTTATTGTGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTTATTTG
259 TTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACAC-TTTTTTTATTTG
* **
708514 TGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTT
323 TGTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTT
708560 GAAAAGGGTA
Statistics
Matches: 1463, Mismatches: 99, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
399 689 0.47
400 568 0.39
401 156 0.11
402 50 0.03
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (400 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
TTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
TGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGT
CGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
ACCTATTACA
Found at i:707739 original size:599 final size:598
Alignment explanation
Indices: 706592--708559 Score: 3303
Period size: 599 Copynumber: 3.3 Consensus size: 598
706582 AGACATTTGG
* *
706592 TTATAATTATGTTTTTTGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGAAACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGACACTTTGTTG
* *
706657 TGCACTTGGTTTTTAAAATACAATCTGGACAATATGTATCAACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
*
706722 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* *
706787 TTACATTATAATTATGTTTTTCAATATTTTCGGGATCGACACTTGTTATAAATGTATCGACACTT
196 TTACATTATAATTATG-TTTTCGATATTTTCGGGATCGACACTTGTTATAAACGTATCGACACTT
* **
706852 TGTTGCGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCAACACTTTTTTTATTTGTGT
260 TGTTGTGCACTTGGTTTTTAAAATACAATCT-GACAAGATGTATTGACACTTTTTTTATTTGTGT
*
706917 CGATACTTTTTGTA-ACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
324 CGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTT
*
706981 ACCTATTACATTATAATTATGTTTTTCAATGTTTTCGGGATCGACACTTGTTATAAATGTATCGA
389 ACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGA
707046 CACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATT
454 CACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATT
* **
707111 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACTTGTATATTTAGACCGGTTACATTAAT
519 TGTGTAGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAAT
707176 AATTTACCTATTACA
584 AATTTACCTATTACA
*
707191 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATAGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGACACTTTGTTG
* * *
707256 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGCCACTTTTTGTATTTGTGTCTATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* * *
707321 CTTTTTGTACACATGTTTTCTCAAAAACTGGTATATCTAGACCGATTACATTAATAATTTATCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* * *
707386 TTACATTATAATTATGTTTTCGATGTTTTCGGGATCGACACTTGTTATAAACGTATCGATAATTT
196 TTACATTATAATTATGTTTTCGATATTTTCGGGATCGACACTTGTTATAAACGTATCGACACTTT
*
707451 GTTGTGCACTTGGTTTTTAAAATACAATCTAGACAAGATGTATTGACACTTTTTTTATTTATGTC
261 GTTGTGCACTTGGTTTTTAAAATACAATCT-GACAAGATGTATTGACACTTTTTTTATTTGTGTC
* * *
707516 AATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAAACCGATTACATTAATAATTTA
325 GATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTA
*
707581 CCTATTACATTATAATTATGTTTTTCGATGTTTTCGAGATCGACACTTGTTATAAATGTATCGAC
390 CCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGAC
*
707646 ACTTTGTTGTGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTT
455 ACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTT
* *
707711 GTGTAGATACTTTTTATACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATA
520 GTGTAGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATA
707776 ATTTACCTATTACA
585 ATTTACCTATTACA
* *
707790 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGACACTTTGTTG
707855 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
66 TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
* *
707920 CTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTACCTA
131 CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
* * *
707985 TTACATTATAATTATATTTTTCGTTATTTTCGGGATCGACACTTGTTTTAAACGTATCGACACTT
196 TTACATTATAATTAT-GTTTTCGATATTTTCGGGATCGACACTTGTTATAAACGTATCGACACTT
* * *
708050 TATTGTGCACTTGGTTTTTAAAATACAATCTGAACAAAATGTATTGACACTTGTTTTATTTGTGT
260 TGTTGTGCACTTGGTTTTTAAAATACAATCTG-ACAAGATGTATTGACACTTTTTTTATTTGTGT
708115 CGATACTTGTTT-TACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATT
324 CGATACTT-TTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATT
* * *
708179 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACGCTTGTTTTAAACGTATCG
388 TACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCG
708244 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
453 ACACTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTAT
* * *
708309 TTGTGTGGATACTTTTTGTACACCTGTTTTTCACAAAAACCGGTATATTTAGACCGATTACATTA
518 TTGTGTAGATACTTTTTGTACACCTG-TTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTA
708374 ATAATTTACCTATTACA
582 ATAATTTACCTATTACA
* * * * * *
708391 TTATAATTATGTTTTTCGATG-TTTTGCGAAGCGACACTCGTTTTAAATGTATCGACACTTTATT
1 TTATAATTATGTTTTTCGATGTTTTTG-GGATCGACAATTGTTATAAATGTATCGACACTTTGTT
*
708455 GTGCACTTAGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTTATTTGTGTCGA
65 GTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACAC-TTTTTTTATTTGTGTCGA
* **
708520 TACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTT
129 TACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTT
708560 GAAAAGGGTA
Statistics
Matches: 1284, Mismatches: 78, Indels: 11
0.94 0.06 0.01
Matches are distributed among these distances:
598 116 0.09
599 648 0.50
600 311 0.24
601 154 0.12
602 55 0.04
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (598 bp):
TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATAAATGTATCGACACTTTGTTG
TGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTGTGTCGATA
CTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGATTACATTAATAATTTACCTA
TTACATTATAATTATGTTTTCGATATTTTCGGGATCGACACTTGTTATAAACGTATCGACACTTT
GTTGTGCACTTGGTTTTTAAAATACAATCTGACAAGATGTATTGACACTTTTTTTATTTGTGTCG
ATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAATTTAC
CTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACA
CTTTGTTGTGCACTTGGTTTTTAAAATACAATCTGGACAAGATGTATCGACACTTTTTTTATTTG
TGTAGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTAATAA
TTTACCTATTACA
Found at i:711136 original size:15 final size:15
Alignment explanation
Indices: 711113--711153 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
711103 AGAGGTTGTC
*
711113 GTTGAGAAGATCTGG
1 GTTGAGAAGAGCTGG
* *
711128 GTTGGGAAGAGGTGG
1 GTTGAGAAGAGCTGG
711143 GTTGAGAAGAG
1 GTTGAGAAGAG
711154 ATTTGAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.49, T:0.22
Consensus pattern (15 bp):
GTTGAGAAGAGCTGG
Found at i:712074 original size:199 final size:199
Alignment explanation
Indices: 711532--714179 Score: 4459
Period size: 199 Copynumber: 13.3 Consensus size: 199
711522 GTTACATTGC
* * *
711532 TACCTATTACATTATAATTATGGGTTTCGATATTTTTTGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
711597 ACAC-TTTTAGTGCACTTGGTTTTGAAATATA-TCATGGACCAAAAGTATCGACACTTGTTTGAT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTC-TGGACCAAAAGTATCGACACTTGTTTGAT
* * *
711660 TTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATCGG--TA-TTAGATCGATTATATTGC
130 TTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGC
711722 TAATT
195 TAATT
*
711727 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGAATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
711792 ACAC-TTTTAGTGCTCTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * **
711856 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAATCGGTATATTTAGACCATTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
711921 AATT
196 AATT
* *
711925 TACCTATTACATTATCATTATGGGTTTCAATGTTTTTGGGATCGATACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
711990 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
** * *
712055 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACTGGTTATATAGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
712120 AATT
196 AATT
712124 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
712189 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATG
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * *
712254 TGTGTCGATACTTTTTGTACACCTGCTTTCTCAAAAACCGATATATTTAGACTGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
712319 AATT
196 AATT
* * * *
712323 TACCTATTACGTTATCATTATGGGTTTAGATATTTTTGGGATCGACACTTGCTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
712388 ACACTTTTTAGTGCACTTGATTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* *
712453 TGTGTCGATACTTTTTGTACACCTATTTTCTCAAAAACCGGTATATTTGGACCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
712518 AATT
196 AATT
* *
712522 TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* * *
712587 ACACTTTTTAGTGCAATTGGTTTTGAAATACATTCTGGACCAAAAGTATCAACACTTGTATGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
*
712652 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGATTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
712717 AATT
196 AATT
*
712721 TACCTATTACATTATCATTATGGGTTTTGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
712786 ACACTTTTTAGTGCACTTGATTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
*
712851 TGTGTCGATACTTTTTATACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
712916 AATT
196 AATT
*
712920 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATTGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
*
712985 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATG
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * *
713050 TGTGTTGATACTTTTTGTACACCTGTTTTCTCAAAAACCGATATATTTAGA-CTGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
713114 AATT
196 AATT
*
713118 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTGGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* * *
713183 ATACTTTTTACTGCACTTGGTTTTGAAATACATTCTGAACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * *
713248 TGTGTCTATACTTTTTGTACACATGTTTTCTCAAAAATCGGTATATTTAGACCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
713313 AATT
196 AATT
*
713317 TACCTATTACATTATAATTAT-GGTTTCGATG-TTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* *
713380 ATACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAGGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * * **
713445 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATCGATATATTTAGACTGGTTATATAACT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
713510 AATT
196 AATT
* * * *
713514 TACCTACTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCA
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
* * *
713579 ACACTTTTTAGTGTACTTGGTTTTGAAATATATTCTGGACCAAAAGTATCGACACTTGTTTGATG
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* *
713644 TGTGTCGATACTTTTTGTACACCTGTTTTTTCAAAAACTGGTATATTTAGACCGGTTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
713709 AATT
196 AATT
* *
713713 TACCTATTACATTATCATTATGGGTTTGGATGTTTTTGGGATCGACACTGGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
713778 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* *
713843 TGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGATTATATTGCT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
713908 AATT
196 AATT
* ** *
713912 TACCTATTACATTATAATTATGAATTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCA
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
713977 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
66 ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
* * * *
714042 TGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAATCGGTATATTTAGATCGGTTATATTGTT
131 TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
*
714107 GATT
196 AATT
* * * *
714111 TACCTATGACATTATAATTATGGTTTTTGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
1 TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
714176 ACAC
66 ACAC
714180 ATAAGTTTAC
Statistics
Matches: 2309, Mismatches: 136, Indels: 12
0.94 0.06 0.00
Matches are distributed among these distances:
195 160 0.07
196 2 0.00
197 178 0.08
198 291 0.13
199 1678 0.73
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (199 bp):
TACCTATTACATTATCATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCG
ACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTGATT
TGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCT
AATT
Found at i:714549 original size:19 final size:19
Alignment explanation
Indices: 714507--714573 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
714497 TTCCCATCTC
* * *
714507 ATACATAATTAT-ATTCAC
1 ATACAAAATTATAAATCAT
714525 ATACAAAATTATAAATCAT
1 ATACAAAATTATAAATCAT
*
714544 ATACAAAATT-TAAAATCTT
1 ATACAAAATTAT-AAATCAT
714563 ATACAAAATTA
1 ATACAAAATTA
714574 ATCCTACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.29
19 30 0.71
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (19 bp):
ATACAAAATTATAAATCAT
Found at i:716067 original size:15 final size:15
Alignment explanation
Indices: 716047--716078 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
716037 CCTCATTTCC
*
716047 TCCATCTTTTCTTCT
1 TCCATCTTCTCTTCT
716062 TCCATCTTCTCTTCT
1 TCCATCTTCTCTTCT
716077 TC
1 TC
716079 AAATTTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (15 bp):
TCCATCTTCTCTTCT
Found at i:716760 original size:22 final size:21
Alignment explanation
Indices: 716732--716787 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
716722 AACCTGCATT
*
716732 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
716754 TATAATAATTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
716778 TATAA-AAAAC
1 TATAATAAAAC
716788 AAAAACATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
20 2 0.07
21 1 0.03
22 8 0.27
23 2 0.07
24 16 0.53
25 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:718087 original size:20 final size:20
Alignment explanation
Indices: 718039--718088 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
718029 CATTTACACA
718039 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
*
718058 ACCTAT-AATATCATTTTTT
1 ACCTATAAATATCATTTTCT
*
718077 ACTTATAAATAT
1 ACCTATAAATAT
718089 TAAATAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:718774 original size:183 final size:181
Alignment explanation
Indices: 718479--719485 Score: 1064
Period size: 183 Copynumber: 5.6 Consensus size: 181
718469 TAAAGTATCG
* *
718479 ACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTTGAGACCGGTTTTATCATATT
1 ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCATTTTGAGACAGGTTTTATCATATT
* * *
718544 TTTACATGTTATATTATTATGGATCAATACATTTTTTAAAAAGTATCGACACTTTATAGGCGCTA
66 TTTACCTGTTATATTGTTATGGATCAATACA-TTTTTATAAAGTATCGACACTTTATAGGCGCTA
* *
718609 TAACTTTTTCTCTTTTAAACTCATAAAGTGTCGATACTTATATTAAATTATTA
130 TAACTTCTTCTCTTTTAAATTCA-AAAGTGTCGATACTTATATTAAATTATTA
* * * * *
718662 ACACTTTCAACATATTCGGTAGCGTTTTACTGGTTTTGTCAATTTTTATACATGTTTTATCATAT
1 ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTC-ATTTTGAGACAGGTTTTATCATAT
* *
718727 TTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTA
65 TTTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTATAGGCGCTA
* *
718792 TAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAGTTATACTAAAGTTATATTAAAGTA
130 TAACTTCTTCTCTTTTAAATT-CAAAAGTGTCGATACTTATATTAAA--T-TA-T----TA
* * * *
718853 TCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTTTCATTGTAGAGACCGGTTTTATCA
1 ---ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCATT-TTGAGACAGGTTTTATCA
* * * * *
718918 TATTTTTAGCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTGTCGACACTTTTTAGGCG
62 TATTTTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTATAGGCG
* **
718983 CTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTATATTAAATTATCG
127 CTATAACTTCTTCTCTTTTAAATTCA-AAAGTGTCGATACTTATATTAAATTATTA
* * * * * *
719039 ACACTTTCAACATATCCGATATC-TTTTTCCAGTTTTGTCATTTTTGAGACATGTTTTGTCATAT
1 ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCA-TTTTGAGACAGGTTTTATCATAT
* * * * * *
719103 TTTTACCTGTTATATTGTTATGGATTAATACATTTTCATAAAGTGTCAACACTTTTTA---G-TT
65 TTTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTATAGGCGCTA
* ** **
719164 TAA----TT-TC------A---GAAAGTGTCGATACTTATATTAAGGTATCG
130 TAACTTCTTCTCTTTTAAATTCAAAAGTGTCGATACTTATATTAAATTATTA
* * * * ** *
719202 ATACTTTCAATATATTCGGTATCGTTTTATTGGTTTTGTCAATTTTGAGATC-TGTTTTATCATA
1 ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTC-ATTTTGAGA-CAGGTTTTATCATA
* * ** *
719266 TTTTTACCTGTTATATTGTTATAGATCGATATTTTTTTTTAAAGTATCGACACTTTATAGGCGCT
64 TTTTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTATAGGCGCT
* **
719331 ATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTATATTAAATTATCG
129 ATAACTTCTTCTCTTTTAAATTCA-AAAGTGTCGATACTTATATTAAATTATTA
* * * * *
719385 ACACTTTCAACATATCCGGTAGCATTTTACCGGTTTTGTCATTTTGGGACCGATTTTGTCATATT
1 ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCATTTTGAGACAGGTTTTATCATATT
* * * *
719450 TGTACCTGTAATATTGCTATGGAGCAATACATTTTT
66 TTTACCTGTTATATTGTTATGGATCAATACATTTTT
719486 CATTTGTATC
Statistics
Matches: 688, Mismatches: 97, Indels: 79
0.80 0.11 0.09
Matches are distributed among these distances:
163 45 0.07
164 80 0.12
165 2 0.00
167 2 0.00
168 4 0.01
172 2 0.00
173 4 0.01
174 2 0.00
178 4 0.01
179 2 0.00
181 1 0.00
182 130 0.19
183 191 0.28
184 51 0.07
185 1 0.00
186 2 0.00
187 1 0.00
190 1 0.00
191 4 0.01
192 1 0.00
193 5 0.01
194 153 0.22
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (181 bp):
ACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCATTTTGAGACAGGTTTTATCATATT
TTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCGACACTTTATAGGCGCTAT
AACTTCTTCTCTTTTAAATTCAAAAGTGTCGATACTTATATTAAATTATTA
Found at i:718916 original size:194 final size:182
Alignment explanation
Indices: 718466--719157 Score: 859
Period size: 194 Copynumber: 3.7 Consensus size: 182
718456 TACGCGTACT
* * * **
718466 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTTGAGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCATTTTGAGACAT
* * * * *
718531 GTTTTATCATATTTTTACATGTTATATTATTATGGATCAATACATTTTTTAAAAAGTATCGACAC
66 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACA-TTTTTATAAAGTGTCGACAC
* * *
718596 TTTATAGGCGCTATAACTTTTTCTCTTTTAAACTCATAAAGTGTC-GATACTTA
130 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTG-CAGATACTTA
** * * * * *
718649 TATTAAATTATTAACACTTTCAACATATTCGGTAGCGTTTTACTGGTTTTGTCAATTTTTATACA
1 TATTAAATTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTC-ATTTTGAGACA
* *
718714 TGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
65 TGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTGTCGACAC
718779 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATAGTTATACTAAAGTTA
130 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTG-C---AG--ATAC-----TTA
* * * *
718843 TATTAAAGTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTTTCATTGTAGAGACC
1 TATTAAATTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCATT-TTGAGACA
* * *
718908 GGTTTTATCATATTTTTAGCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTGTCGACAC
65 TGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTGTCGACAC
* *
718973 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTA
130 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCAGATACTTA
* * *
719026 TATTAAATTATCGACACTTTCAACATATCCGATATC-TTTTTCCAGTTTTGTCATTTTTGAGACA
1 TATTAAATTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCA-TTTTGAGACA
* ** * *
719090 TGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATTAATACATTTTCATAAAGTGTCAACAC
65 TGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTGTCGACAC
719155 TTT
130 TTT
719158 TTAGTTTAAT
Statistics
Matches: 443, Mismatches: 50, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
182 80 0.18
183 144 0.33
184 51 0.12
187 1 0.00
188 4 0.01
189 4 0.01
190 1 0.00
193 6 0.01
194 152 0.34
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (182 bp):
TATTAAATTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCATTTTGAGACAT
GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTGTCGACACT
TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCAGATACTTA
Found at i:719321 original size:164 final size:163
Alignment explanation
Indices: 718999--719321 Score: 416
Period size: 164 Copynumber: 2.0 Consensus size: 163
718989 CTTCTTCTCT
*
718999 TTTAAATTCAGAAAGTGCCGATACTTATATTAAATTATCGACACTTTCAACATATCCGATATCTT
1 TTTAAATTCAGAAAGTGCCGATACTTATATTAAAGTATCGACACTTTCAACATATCCGATATCTT
* * * *
719064 TTTCCAGTTTTGTCATTTTTGAGACATGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATT
66 TTTCCAGTTTTGTCAATTTTGAGACATGTTTTATCATATTTTTACCTGTTATATTGTTATAGATC
*
719129 AATACATTTTCATAAAGTGTCAACACTTTTTAG
131 AATACATTTTCATAAAGTATCAACACTTTTTAG
* * * * * * *
719162 TTTAATTTCAGAAAGTGTCGATACTTATATTAAGGTATCGATACTTTCAATATATTCGGTATCGT
1 TTTAAATTCAGAAAGTGCCGATACTTATATTAAAGTATCGACACTTTCAACATATCCGATATC-T
**
719227 TTTAT-TGGTTTTGTCAATTTTGAGATC-TGTTTTATCATATTTTTACCTGTTATATTGTTATAG
65 TTT-TCCAGTTTTGTCAATTTTGAGA-CATGTTTTATCATATTTTTACCTGTTATATTGTTATAG
* ** ** *
719290 ATCGATATTTTTTTTTAAAGTATCGACACTTT
128 ATCAATACATTTTCATAAAGTATCAACACTTT
719322 ATAGGCGCTA
Statistics
Matches: 136, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
163 55 0.40
164 79 0.58
165 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (163 bp):
TTTAAATTCAGAAAGTGCCGATACTTATATTAAAGTATCGACACTTTCAACATATCCGATATCTT
TTTCCAGTTTTGTCAATTTTGAGACATGTTTTATCATATTTTTACCTGTTATATTGTTATAGATC
AATACATTTTCATAAAGTATCAACACTTTTTAG
Found at i:719441 original size:20 final size:21
Alignment explanation
Indices: 719413--719451 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
719403 GTAGCATTTT
*
719413 ACCGGTTTTGTCAT-TTTGGG
1 ACCGATTTTGTCATATTTGGG
719433 ACCGATTTTGTCATATTTG
1 ACCGATTTTGTCATATTTG
719452 TACCTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (21 bp):
ACCGATTTTGTCATATTTGGG
Found at i:719481 original size:346 final size:346
Alignment explanation
Indices: 718840--719484 Score: 981
Period size: 346 Copynumber: 1.9 Consensus size: 346
718830 TATACTAAAG
*
718840 TTATATTAAAGTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTTTCATTGTAGAG
1 TTATATTAAAGTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCATTGTAGAG
* *
718905 ACCGGTTTTATCATATTTTTAGCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTGTCGA
66 ACCGGTTTTATCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGA
*
718970 CACTTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTATATTAAATT
131 CACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTATATTAAATT
* * *
719035 ATCGACACTTTCAACATATCCGATATCTTTTTCCAGTTTTGTCATTTTTGAGACATGTTTTGTCA
196 ATCGACACTTTCAACATATCCGATAGCTTTTACCAGTTTTGTCATTTTTGAGACACGTTTTGTCA
* * * **
719100 TATTTTTACCTGTTATATTGTTATGGATTAATACATTTTCATAAAGTGTCAACACTTTTTAGTTT
261 TATTTGTACCTGTAATATTGCTATGGAGCAATACATTTTCATAAAGTGTCAACACTTTTTAGTTT
719165 AATTTCAGAAAGTGTCGATAC
326 AATTTCAGAAAGTGTCGATAC
* * * * ** *
719186 TTATATTAAGGTATCGATACTTTCAATATATTCGGTATCGTTTTATTGGTTTTGTCAATT-TTGA
1 TTATATTAAAGTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTC-ATTGTAGA
* * ** *
719250 GATCTGTTTTATCATATTTTTACCTGTTATATTGTTATAGATCGATATTTTTTTTTAAAGTATCG
65 GACCGGTTTTATCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCG
**
719315 ACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTATATTAAAT
130 ACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTATATTAAAT
* * *
719380 TATCGACACTTTCAACATATCCGGTAGCATTTTACCGGTTTTGTCA-TTTTGGGAC-CGATTTTG
195 TATCGACACTTTCAACATATCCGATAGC-TTTTACCAGTTTTGTCATTTTTGAGACACG-TTTTG
719443 TCATATTTGTACCTGTAATATTGCTATGGAGCAATACATTTT
258 TCATATTTGTACCTGTAATATTGCTATGGAGCAATACATTTT
719485 TCATTTGTAT
Statistics
Matches: 267, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
345 1 0.00
346 248 0.93
347 18 0.07
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.45
Consensus pattern (346 bp):
TTATATTAAAGTATCGACACTTTCAACATATCCGGTATCGTTTTACCGGTTTTGTCATTGTAGAG
ACCGGTTTTATCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGA
CACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGCCGATACTTATATTAAATT
ATCGACACTTTCAACATATCCGATAGCTTTTACCAGTTTTGTCATTTTTGAGACACGTTTTGTCA
TATTTGTACCTGTAATATTGCTATGGAGCAATACATTTTCATAAAGTGTCAACACTTTTTAGTTT
AATTTCAGAAAGTGTCGATAC
Found at i:720252 original size:83 final size:85
Alignment explanation
Indices: 720105--720259 Score: 203
Period size: 83 Copynumber: 1.8 Consensus size: 85
720095 AGTCAAGTAA
* * * * *
720105 AAAATTTCGAGTTATTCGAGTTGACGAGTTCTATTTTACAACTTGAAGTTCGTTTGAAATTTTTT
1 AAAATTTCGAGTTATTCGAGTTGAAGAGTTCTATTTTACAACTGGAAATTCGCTAGAAATTTTTT
720170 T-GAGTCAATTCGAGTAAAC
66 TCGAGTCAATTCGAGTAAAC
720189 AAAATTT-GAGTTATTCGAGTTGAAGAG-TCTTATTTTACAACTCGGAAATT-GACTAGAAA-TT
1 AAAATTTCGAGTTATTCGAGTTGAAGAGTTC-TATTTTACAACT-GGAAATTCG-CTAGAAATTT
720250 TTTTCGAGTC
63 TTTTCGAGTC
720260 GATTTTTTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
82 2 0.03
83 38 0.61
84 22 0.35
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (85 bp):
AAAATTTCGAGTTATTCGAGTTGAAGAGTTCTATTTTACAACTGGAAATTCGCTAGAAATTTTTT
TCGAGTCAATTCGAGTAAAC
Found at i:720679 original size:30 final size:32
Alignment explanation
Indices: 720645--720704 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
720635 CATTTTAATA
*
720645 AAAATATTAATTAT-TAA-ATTATATTTATTG
1 AAAATATTAATAATATAATATTATATTTATTG
* *
720675 AAAATTTTAATAATATAATATTATTTTTAT
1 AAAATATTAATAATATAATATTATATTTAT
720705 AATTATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 12 0.48
31 3 0.12
32 10 0.40
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (32 bp):
AAAATATTAATAATATAATATTATATTTATTG
Found at i:720711 original size:20 final size:19
Alignment explanation
Indices: 720678--720733 Score: 73
Period size: 17 Copynumber: 3.1 Consensus size: 19
720668 TTTATTGAAA
720678 ATTTTAATAATATAATATT
1 ATTTTAATAATATAATATT
*
720697 ATTTTTATAAT-T-ATATT
1 ATTTTAATAATATAATATT
*
720714 ATTATAAT-ATATAATATT
1 ATTTTAATAATATAATATT
720732 AT
1 AT
720734 AATTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 2 0.06
17 12 0.38
18 8 0.25
19 10 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTAATAATATAATATT
Found at i:720735 original size:43 final size:43
Alignment explanation
Indices: 720640--720744 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 43
720630 AGTATCATTT
* *
720640 TAATAA-A-AATATTAATTATTAAATTATATTTATTGAAAATTT
1 TAATAATATAATATT-ATTTTTAAATTATATTTATTGAAAATTA
*
720682 TAATAATATAATATTATTTTTATAATTATA-TTATT-ATAATATA
1 TAATAATATAATATTATTTTTA-AATTATATTTATTGAAAAT-TA
* *
720725 TAATATTATAATTTTATTTT
1 TAATAATATAATATTATTTT
720745 AATATATATA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
42 10 0.19
43 31 0.57
44 13 0.24
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (43 bp):
TAATAATATAATATTATTTTTAAATTATATTTATTGAAAATTA
Found at i:720878 original size:33 final size:35
Alignment explanation
Indices: 720838--720906 Score: 90
Period size: 33 Copynumber: 2.0 Consensus size: 35
720828 AATTTCAATA
*
720838 ATATAATATAATA-TTTT-TTGTTATTAT-TATAAT
1 ATATAATATAATACTTTTATT-TTAATATATATAAT
*
720871 ATATAATATTATACTTTTATTTTAATATATATAAT
1 ATATAATATAATACTTTTATTTTAATATATATAAT
720906 A
1 A
720907 AATTATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 12 0.39
34 10 0.32
35 9 0.29
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (35 bp):
ATATAATATAATACTTTTATTTTAATATATATAAT
Found at i:720892 original size:149 final size:150
Alignment explanation
Indices: 720661--720948 Score: 422
Period size: 149 Copynumber: 1.9 Consensus size: 150
720651 TTAATTATTA
* *
720661 AATTATATTTATTGAAAATTTTAATAATATAATATTATTTTTATAATTATATTATTATAATATAT
1 AATTATATTTATTGAAAATTTCAATAATATAATATTATTTTTAT-AGTATATTATTATAATATAT
* * **
720726 AATATTATAATTTTATTTTAATATATATAATAAATTTTTAATAAAATTTACATTATTTATTAATT
65 AATATTATAATTTTATTTTAATATATATAATAAATTATAAATAAAATCAACATTATTTATT-ATT
720791 ATTCTAATAAATTATTAAAAAT
129 ATTCTAATAAATTATTAAAAAT
*
720813 AATT-TATTTATTGATAATTTCAATAATATAATATAATATTTTT-T-GT-TATTATTATAATATA
1 AATTATATTTATTGAAAATTTCAATAATATAATAT--TATTTTTATAGTATATTATTATAATATA
* * *
720874 TAATATTATACTTTTATTTTAATATATATAATAAATTATAAATAAAATCAATATTTTTTATTATT
64 TAATATTATAATTTTATTTTAATATATATAATAAATTATAAATAAAATCAACATTATTTATTATT
720939 ATTCTAATAA
129 ATTCTAATAA
720949 TATATAATAA
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
148 13 0.10
149 70 0.56
150 1 0.01
151 28 0.23
152 5 0.04
153 7 0.06
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (150 bp):
AATTATATTTATTGAAAATTTCAATAATATAATATTATTTTTATAGTATATTATTATAATATATA
ATATTATAATTTTATTTTAATATATATAATAAATTATAAATAAAATCAACATTATTTATTATTAT
TCTAATAAATTATTAAAAAT
Found at i:720900 original size:28 final size:28
Alignment explanation
Indices: 720836--720906 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
720826 ATAATTTCAA
*
720836 TAATATAATATAATATTTTTTGTTATTAT
1 TAATAT-ATATAATATTTCTTGTTATTAT
720865 T-ATAATATATAATATTATACTT-TTATT-T
1 TAAT-ATATATAATATT-T-CTTGTTATTAT
720893 TAATATATATAATA
1 TAATATATATAATA
720907 AATTATAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
28 24 0.65
29 11 0.30
30 2 0.05
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (28 bp):
TAATATATATAATATTTCTTGTTATTAT
Found at i:721006 original size:32 final size:36
Alignment explanation
Indices: 720931--721008 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 36
720921 TCAATATTTT
720931 TTATTA-TTATTCTAATAATATATAATAAATTATTA
1 TTATTATTTATTCTAATAATATATAATAAATTATTA
* * *
720966 -AATAATTTATTCTAAT-AT-TTTAA-AAA-TATTA
1 TTATTATTTATTCTAATAATATATAATAAATTATTA
720997 TTATTATTTATT
1 TTATTATTTATT
721009 ATATTTGATG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
31 5 0.14
32 12 0.33
33 4 0.11
34 5 0.14
35 10 0.28
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (36 bp):
TTATTATTTATTCTAATAATATATAATAAATTATTA
Found at i:724238 original size:32 final size:32
Alignment explanation
Indices: 724197--724263 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
724187 TAGTAATCCC
724197 AAGATCCAATTTGGGGATTGAGAATTTGTCAT
1 AAGATCCAATTTGGGGATTGAGAATTTGTCAT
724229 AAGATCCAATTTGGGGATTGAGAATTTGTCAT
1 AAGATCCAATTTGGGGATTGAGAATTTGTCAT
724261 AAG
1 AAG
724264 GACTCTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (32 bp):
AAGATCCAATTTGGGGATTGAGAATTTGTCAT
Found at i:725825 original size:244 final size:240
Alignment explanation
Indices: 725347--725835 Score: 732
Period size: 244 Copynumber: 2.0 Consensus size: 240
725337 TGTTGCATAT
*
725347 AATTGTTGTAAGTTTTTTTATTGCTATGGATTTTTCTATTTTTTTACTTGAATTTTTCCTAGAAT
1 AATTATTGTAAGTTTTTTTATTGCTATGGATTTTTCTATTTTTTTACTTGAATTTTTCCTAGAAT
* *
725412 CATTGGTTTTTTCACTGGCTTTGACTAGTGTTTATTTTATGTTATATTTTGTGTTTAAATACTCC
66 CATTGGTTTTTTCACTGGATTTGACTAGTGTTTATTTTATGCTATATTTTGTGTTTAAATACTCC
*
725477 TTGATTGTTCATTATTATTGCCGATTTAAGCATTTTGACATGATTTCTGTGCAGGACAATGACTT
131 TTGATTGTTCATTATTATT--CGATTTAAGCATTTTGACATGATTTATGTGCAGGACAATGACTT
* *
725542 TTGGAAAATGTGCTTAAAAGGTTCAAAAACTGCACTTTTTGTTATGG
194 CTGGAAAATGTGCTTAAAAGGTCCAAAAACTGCACTTTTTGTTATGG
*
725589 AATTATTGTAAG-TTTTTTATTGCTATGGATTTTTCTATTTTTTTACTTGAATTTTTCCTATAAT
1 AATTATTGTAAGTTTTTTTATTGCTATGGATTTTTCTATTTTTTTACTTGAATTTTTCCTAGAAT
*
725653 CATTGTAAGTTTTTTCAGTGGATTTGACTAGTGTTTATTTTATGCTATATTTTGTGTTTAAATAC
66 CATTG---GTTTTTTCACTGGATTTGACTAGTGTTTATTTTATGCTATATTTTGTGTTTAAATAC
* * * *
725718 TCCTTGATTGTTCATTGTTGTT-GATTTGAGCATTAATTTTTACATGATTTATGTGCAGGACAAT
128 TCCTTGATTGTTCATTATTATTCGATTTAAGC----ATTTTGACATGATTTATGTGCAGGACAAT
* * * *
725782 GACTTCTGGAAAATGTGCTTAAAAGG-CCCAAAATTGTACTTTTTGTTCTGG
189 GACTTCTGGAAAATGTGCTTAAAAGGTCCAAAAACTGCACTTTTTGTTATGG
725833 AAT
1 AAT
725836 CAAGGCTGGA
Statistics
Matches: 224, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
241 64 0.29
242 11 0.05
244 97 0.43
245 52 0.23
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (240 bp):
AATTATTGTAAGTTTTTTTATTGCTATGGATTTTTCTATTTTTTTACTTGAATTTTTCCTAGAAT
CATTGGTTTTTTCACTGGATTTGACTAGTGTTTATTTTATGCTATATTTTGTGTTTAAATACTCC
TTGATTGTTCATTATTATTCGATTTAAGCATTTTGACATGATTTATGTGCAGGACAATGACTTCT
GGAAAATGTGCTTAAAAGGTCCAAAAACTGCACTTTTTGTTATGG
Found at i:727559 original size:30 final size:29
Alignment explanation
Indices: 727497--727584 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 29
727487 ACCTCTACAT
* * *
727497 TTAACAAAATAATAATGCAGACACTTAAAA
1 TTAACAAAATAATACTTCAG-CACCTAAAA
*
727527 TTAACAAAATAATACTTCATGCACCTATAA
1 TTAACAAAATAATACTTCA-GCACCTAAAA
** *
727557 TTAACTCAATAATACTTTAGGCACCTAA
1 TTAACAAAATAATACTTCA-GCACCTAA
727585 TGTAACGCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
30 47 0.98
31 1 0.02
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (29 bp):
TTAACAAAATAATACTTCAGCACCTAAAA
Found at i:727879 original size:16 final size:16
Alignment explanation
Indices: 727855--727885 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
727845 CATTATCGAG
*
727855 AATATCCATAAAATCA
1 AATAACCATAAAATCA
727871 AATAACCATAAAATC
1 AATAACCATAAAATC
727886 TTAAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAACCATAAAATCA
Found at i:728740 original size:41 final size:41
Alignment explanation
Indices: 728685--728813 Score: 113
Period size: 41 Copynumber: 3.1 Consensus size: 41
728675 GTTTATAACT
* * *
728685 CAAACACCGTAATAGAGTTGTTTATAGTGGCGTTTCTTCAA
1 CAAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTGTTCAA
* * *
728726 CAAACGCCGCAATAG-TTTGTTAATATCGCGGCGTTTGTAT-AA
1 CAAACGCCGCAATAGAGTTGTT--TATAGTGGCGTTTGT-TCAA
** *
728768 -AAACGTTGCGATA-ATGTTGTTTATAGTGGCGTTTGTTCAA
1 CAAACGCCGCAATAGA-GTTGTTTATAGTGGCGTTTGTTCAA
728808 CAAACG
1 CAAACG
728814 ACGCTATATA
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
39 1 0.01
40 20 0.29
41 28 0.41
42 19 0.28
43 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (41 bp):
CAAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTGTTCAA
Found at i:730593 original size:41 final size:41
Alignment explanation
Indices: 730540--730647 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
730530 ATATGATTAA
* *
730540 TTTAGTGACGTTTGTGAGAAAACGCCGA-AATAGCAATAAAC
1 TTTAGTGGCGTTTGTGAGAAAACACC-ACAATAGCAATAAAC
* * ** **
730581 TTTAGTGGCGTTTTTGAGAAAACACCACAATATCCTTCTAC
1 TTTAGTGGCGTTTGTGAGAAAACACCACAATAGCAATAAAC
**
730622 TTTAGTGGCGTTTGTGACCAAACACC
1 TTTAGTGGCGTTTGTGAGAAAACACC
730648 GTAATATCCC
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 1 0.02
41 54 0.98
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (41 bp):
TTTAGTGGCGTTTGTGAGAAAACACCACAATAGCAATAAAC
Found at i:730654 original size:41 final size:41
Alignment explanation
Indices: 730579--730656 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
730569 ATAGCAATAA
* *
730579 ACTTTAGTGGCGTTTTTGAGAAAACACCACAATATCCTTCT
1 ACTTTAGTGGCGTTTGTGACAAAACACCACAATATCCTTCT
* **
730620 ACTTTAGTGGCGTTTGTGACCAAACACCGTAATATCC
1 ACTTTAGTGGCGTTTGTGACAAAACACCACAATATCC
730657 CTGTAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (41 bp):
ACTTTAGTGGCGTTTGTGACAAAACACCACAATATCCTTCT
Found at i:730667 original size:41 final size:41
Alignment explanation
Indices: 730581--730677 Score: 104
Period size: 41 Copynumber: 2.4 Consensus size: 41
730571 AGCAATAAAC
* * * *
730581 TTTAGTGGCGTTTTTGAGAAAACACCACAATATCCTTCTAC
1 TTTAGTGGCGTTTGTGACAAAACACCACAATATCCCTCTAA
* ** *
730622 TTTAGTGGCGTTTGTGACCAAACACCGTAATATCCCTGTAA
1 TTTAGTGGCGTTTGTGACAAAACACCACAATATCCCTCTAA
* *
730663 TTTAGCGGTGTTTGT
1 TTTAGTGGCGTTTGT
730678 AAAAAAATGC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTAGTGGCGTTTGTGACAAAACACCACAATATCCCTCTAA
Found at i:736717 original size:19 final size:19
Alignment explanation
Indices: 736693--736750 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
736683 TAATGAAAAC
736693 TTTTATTTATTATATTGGA
1 TTTTATTTATTATATTGGA
* **
736712 TTTTATGT-TGCT-TT---
1 TTTTATTTATTATATTGGA
736726 TTTTATTTATTATATTGGA
1 TTTTATTTATTATATTGGA
736745 TTTTAT
1 TTTTAT
736751 GTTGCTTGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 10
0.64 0.14 0.23
Matches are distributed among these distances:
14 7 0.25
15 2 0.07
16 2 0.07
17 2 0.07
18 2 0.07
19 13 0.46
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (19 bp):
TTTTATTTATTATATTGGA
Found at i:736732 original size:33 final size:33
Alignment explanation
Indices: 736693--736757 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
736683 TAATGAAAAC
736693 TTTTATTTATTATATTGGATTTTATGTTGCTTT
1 TTTTATTTATTATATTGGATTTTATGTTGCTTT
736726 TTTTATTTATTATATTGGATTTTATGTTGCTT
1 TTTTATTTATTATATTGGATTTTATGTTGCTT
736758 GTTATGGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.18, C:0.03, G:0.12, T:0.66
Consensus pattern (33 bp):
TTTTATTTATTATATTGGATTTTATGTTGCTTT
Found at i:736960 original size:41 final size:42
Alignment explanation
Indices: 736875--736974 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 42
736865 ATTCTGTGTT
* * *
736875 ATTTAGTGGCGTTTGTTACAAAAAACGCCGCAATATATCATAC
1 ATTTAGCGGCGTTTGTTACAAAAAACGCCACAAAATAT-ATAC
*
736918 ATTTAGCGGCGTTTG-TATCAAAACACGCCACAAAATAT-TAC
1 ATTTAGCGGCGTTTGTTA-CAAAAAACGCCACAAAATATATAC
736959 ATCTATAGCGGCGTTT
1 AT-T-TAGCGGCGTTT
736975 TTTGTTACAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
41 5 0.10
42 3 0.06
43 42 0.84
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (42 bp):
ATTTAGCGGCGTTTGTTACAAAAAACGCCACAAAATATATAC
Found at i:737146 original size:44 final size:43
Alignment explanation
Indices: 736964--737160 Score: 173
Period size: 44 Copynumber: 4.6 Consensus size: 43
736954 ATTACATCTA
** * * * *
736964 TAGCGGCGTTTTT-TGTTACAAACGTTGCTATATACCAACCTT
1 TAGCGGCGTTTTTATCCTAAAAACGCTGCTATATACCAATCAT
* * *
737006 TAGCGGCGTTTGTATACTAAAACCGCTGCTATATACCATATCAT
1 TAGCGGCGTTTTTATCCTAAAAACGCTGCTATATACCA-ATCAT
* * * * * *
737050 CAACGACGTTTGTATCCT-AAAACGCCGCTATATACCAGTTCAT
1 TAGCGGCGTTTTTATCCTAAAAACGCTGCTATATACCA-ATCAT
* * **
737093 TATCTGCGTTTTTATCCTAAAAACGCTGCTATATACCAAATTTT
1 TAGCGGCGTTTTTATCCTAAAAACGCTGCTATATACC-AATCAT
*
737137 TAGCGGCGTTTTTATCGTAAAAAC
1 TAGCGGCGTTTTTATCCTAAAAAC
737161 ACCGCTAAGT
Statistics
Matches: 123, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
42 12 0.10
43 53 0.43
44 57 0.46
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (43 bp):
TAGCGGCGTTTTTATCCTAAAAACGCTGCTATATACCAATCAT
Found at i:737177 original size:44 final size:44
Alignment explanation
Indices: 736990--737195 Score: 111
Period size: 44 Copynumber: 4.7 Consensus size: 44
736980 TACAAACGTT
* * * * * *
736990 GCTATATACC-AACCT-TTAGCGGCGTTTGTATACTAAAACCGCT
1 GCTATATACCAAATCTATT-GCGGCGTTTTTATCCTAAAAACACC
* ** * * *
737033 GCTATATACCATATC-ATCAACGACGTTTGTATCCT-AAAACGCC
1 GCTATATACCAAATCTAT-TGCGGCGTTTTTATCCTAAAAACACC
** * * * *
737076 GCTATATACCAGTTC-ATTATCTGCGTTTTTATCCTAAAAACGCT
1 GCTATATACCAAATCTATT-GCGGCGTTTTTATCCTAAAAACACC
* *
737120 GCTATATACCAAAT-TTTTAGCGGCGTTTTTATCGTAAAAACACC
1 GCTATATACCAAATCTATT-GCGGCGTTTTTATCCTAAAAACACC
**
737164 GCTA-AGTGTCAAATCCTATTGCGGCGTTTTTA
1 GCTATA-TACCAAAT-CTATTGCGGCGTTTTTA
737196 ATACAAACGC
Statistics
Matches: 127, Mismatches: 27, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
43 44 0.35
44 68 0.54
45 12 0.09
46 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
GCTATATACCAAATCTATTGCGGCGTTTTTATCCTAAAAACACC
Found at i:737217 original size:43 final size:42
Alignment explanation
Indices: 737139--737296 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 42
737129 CAAATTTTTA
* * * *
737139 GCGGCGTTTTTATCGTAAAAACACCGCTAAGTGTCAAATCCTATT
1 GCGGCGTTTTTA--ATACAAACGCCGCTAAATGTCAAA-CCTATT
737184 GCGGCGTTTTTAATACAAACGCCGCTAAATGTCAAAACCTATT
1 GCGGCGTTTTTAATACAAACGCCGCTAAATGTC-AAACCTATT
** * * ** *
737227 GCGTTGTTTGTAAGACAAACGATGCTAAATATCAGAACCTATT
1 GCGGCGTTTTTAATACAAACGCCGCTAAATGTCA-AACCTATT
* *
737270 GTGGCGTTTTTGGA-ACAAACGCCGCTA
1 GCGGCGTTTTT-AATACAAACGCCGCTA
737297 TATATCGTTA
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 1 0.01
43 75 0.82
44 4 0.04
45 12 0.13
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (42 bp):
GCGGCGTTTTTAATACAAACGCCGCTAAATGTCAAACCTATT
Found at i:737862 original size:84 final size:84
Alignment explanation
Indices: 737721--737890 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
737711 TGTCATGGCA
737721 AGAGACGGATGTAGAATTTTAAATTGGTGATACGAACTTCAACTTATAAAATTCTAAAGGGTGAA
1 AGAGACGGATGTAGAATTTTAAATTGGTGATACGAACTTCAACTTATAAAATTCTAAAGGGTGAA
737786 CTTGATCTTATGAAATACC
66 CTTGATCTTATGAAATACC
737805 AGAGACGGATGTAGAATTTTAAATTGGTGATACGAACTTCAACTTATAAAATTCTAAAGGGTGAA
1 AGAGACGGATGTAGAATTTTAAATTGGTGATACGAACTTCAACTTATAAAATTCTAAAGGGTGAA
737870 CTTGATCTTATGAAATACC
66 CTTGATCTTATGAAATACC
737889 AG
1 AG
737891 GGACAAAATC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (84 bp):
AGAGACGGATGTAGAATTTTAAATTGGTGATACGAACTTCAACTTATAAAATTCTAAAGGGTGAA
CTTGATCTTATGAAATACC
Found at i:738831 original size:2 final size:2
Alignment explanation
Indices: 738826--738859 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
738816 ATTTTTTTTA
738826 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
738860 TATGTTTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:740322 original size:19 final size:20
Alignment explanation
Indices: 740298--740336 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
740288 ATTGATTTAG
740298 ATATGTAATAT-TTTAATTA
1 ATATGTAATATCTTTAATTA
740317 ATATGTAATATCTTTAATTA
1 ATATGTAATATCTTTAATTA
740337 TCTCAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
ATATGTAATATCTTTAATTA
Found at i:742178 original size:13 final size:13
Alignment explanation
Indices: 742160--742186 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
742150 CATAATTGAA
742160 CAGTCTTCATATG
1 CAGTCTTCATATG
742173 CAGTCTTCATATG
1 CAGTCTTCATATG
742186 C
1 C
742187 GCGTCTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:745418 original size:36 final size:36
Alignment explanation
Indices: 745371--745443 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
745361 GTTTTTGCTC
*
745371 ACAAATCCATGCACGAGATAGCATGTATATATATAT
1 ACAAATCCATGCACGAGACAGCATGTATATATATAT
745407 ACAAATCCATGCACGAGACAGCATGTATATATATAT
1 ACAAATCCATGCACGAGACAGCATGTATATATATAT
745443 A
1 A
745444 TATATAAGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (36 bp):
ACAAATCCATGCACGAGACAGCATGTATATATATAT
Found at i:750218 original size:3 final size:3
Alignment explanation
Indices: 750210--750235 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
750200 TTAAATATTT
750210 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
750236 TATCTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:751264 original size:34 final size:33
Alignment explanation
Indices: 751191--751267 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
751181 AAGATTAAAA
** * *
751191 TAAATAATTTTAAATATAATTTAAATGTTAAGG
1 TAAATAATTAAAAACATAATTTAAATGCTAAGG
751224 TAAAATAATTAAAAACATAGATTTAGAATGCT-AGG
1 T-AAATAATTAAAAACATA-ATTTA-AATGCTAAGG
751259 TAAATAATT
1 TAAATAATT
751268 TTAAAATTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 1 0.03
34 22 0.59
35 9 0.24
36 5 0.14
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (33 bp):
TAAATAATTAAAAACATAATTTAAATGCTAAGG
Found at i:751755 original size:28 final size:29
Alignment explanation
Indices: 751692--751757 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
751682 ATTTTATATT
* *
751692 GGGGTCGAATTTGATCTTATAAAATTTCAG
1 GGGGT-GAACTTGAACTTATAAAATTTCAG
*
751722 GGGGTGAACTTGAACTTAT-AAATTTTAG
1 GGGGTGAACTTGAACTTATAAAATTTCAG
*
751750 GTGGTGAA
1 GGGGTGAA
751758 AATATATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 15 0.47
29 12 0.38
30 5 0.16
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (29 bp):
GGGGTGAACTTGAACTTATAAAATTTCAG
Found at i:753261 original size:30 final size:25
Alignment explanation
Indices: 753226--753296 Score: 70
Period size: 31 Copynumber: 2.6 Consensus size: 25
753216 TATATTATTT
753226 TTTATGTTTAATGTAATGTTTTTAGTTGA
1 TTTATGTTTAATGTAAT-TTTTTA--T-A
*
753255 TATTATGTTTTAGTGCTAATTTTTTATA
1 T-TTATG-TTTAATG-TAATTTTTTATA
753283 TTTATGTTTAATGT
1 TTTATGTTTAATGT
753297 TATATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
25 1 0.03
26 6 0.16
27 5 0.14
28 2 0.05
29 2 0.05
30 5 0.14
31 12 0.32
32 4 0.11
ACGTcount: A:0.24, C:0.01, G:0.14, T:0.61
Consensus pattern (25 bp):
TTTATGTTTAATGTAATTTTTTATA
Found at i:753310 original size:18 final size:20
Alignment explanation
Indices: 753289--753330 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
753279 TATATTTATG
753289 TTTAATGTTATA-TAA-TTT
1 TTTAATGTTATATTAAGTTT
* *
753307 TTTATTTTTATATTAAGTTT
1 TTTAATGTTATATTAAGTTT
753327 TTTA
1 TTTA
753331 TATTATTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 10 0.50
19 3 0.15
20 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTAATGTTATATTAAGTTT
Found at i:753322 original size:29 final size:28
Alignment explanation
Indices: 753271--753350 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 28
753261 GTTTTAGTGC
* *
753271 TAATTTTTTATATTTATGTTTAATGTTATA
1 TAATTTTTTATTTTTAT-ATTAA-GTTATA
* *
753301 TAATTTTTTATTTTTATATTAAGTTTTT
1 TAATTTTTTATTTTTATATTAAGTTATA
* *
753329 TATATTATTTGTTTTTATATTA
1 TA-ATTTTTTATTTTTATATTA
753351 TGATTTTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 6 0.14
29 21 0.49
30 16 0.37
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (28 bp):
TAATTTTTTATTTTTATATTAAGTTATA
Found at i:753359 original size:13 final size:13
Alignment explanation
Indices: 753311--753381 Score: 97
Period size: 13 Copynumber: 5.2 Consensus size: 13
753301 TAATTTTTTA
*
753311 TTTTTATATTAAG
1 TTTTTATATTATG
753324 TTTTTTATATTATTTG
1 -TTTTTATATTA--TG
753340 TTTTTATATTATG
1 TTTTTATATTATG
*
753353 ATTTTATATTATG
1 TTTTTATATTATG
753366 TTTTTATATTATG
1 TTTTTATATTATG
753379 TTT
1 TTT
753382 AGGAAAACCA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
13 29 0.56
14 11 0.21
15 11 0.21
16 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTATATTATG
Found at i:757594 original size:50 final size:50
Alignment explanation
Indices: 757519--757613 Score: 138
Period size: 50 Copynumber: 1.9 Consensus size: 50
757509 ACATGTCATA
* * *
757519 ACATGTATTTAGACTAGTGAAAGTAACATATATAATATCAATGAAATTTG
1 ACATGTATTTACACTAGTGAAAGTAACACATATAATACCAATGAAATTTG
*
757569 ACATGTATTTACAGC-AGTGAAAGTAACACATATTATACCAATGAA
1 ACATGTATTTACA-CTAGTGAAAGTAACACATATAATACCAATGAA
757614 CTTATCACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 39 0.98
51 1 0.03
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.31
Consensus pattern (50 bp):
ACATGTATTTACACTAGTGAAAGTAACACATATAATACCAATGAAATTTG
Found at i:757651 original size:75 final size:75
Alignment explanation
Indices: 757560--757994 Score: 500
Period size: 75 Copynumber: 5.8 Consensus size: 75
757550 ATAATATCAA
* *
757560 TGAAATTTGACATGTATTTACAGCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
* *
757625 GTTACAACAG
66 CTTACACCAG
* * * *
757635 TGAAATTTAACATGTATTTCCACTAGTGAAAGTAACACATACTATACCAATGAACTTATCGCATA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
*
757700 CTTACACCAT
66 CTTACACCAG
* ** * * * *
757710 TTAAAAATAATATGTATTTACACCATTGAAATTAACACATATTATACTAATGAACTTATCACATA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
757775 CTTACACCAG
66 CTTACACCAG
* * * * *
757785 TGAAATTTAATATATATTTCCACCAATGAAAGTAACACATATTATACCGATGAACTTATCACATA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
757850 CTTACA-CATG
66 CTTACACCA-G
* * * ** * * *
757860 TTAAAGTTAACATGTATTTACACCACT-TCATTAACACTTATTATACTAATGAACTTATCACATA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
*
757924 CTTACACCAT
66 CTTACACCAG
* * * * ** *
757934 TAAAATTTGACATGTATTTATATCAGCAAAAGTAACAC--ATTATACCAATGAACTTCTCACA
1 TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACA
757995 CATATCTTAT
Statistics
Matches: 302, Mismatches: 55, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
73 21 0.07
74 59 0.20
75 222 0.74
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (75 bp):
TGAAATTTAACATGTATTTACACCAGTGAAAGTAACACATATTATACCAATGAACTTATCACATA
CTTACACCAG
Found at i:757763 original size:24 final size:24
Alignment explanation
Indices: 757586--757849 Score: 102
Period size: 25 Copynumber: 10.6 Consensus size: 24
757576 TTTACAGCAG
*
757586 TGAAAGTAACACATATTATACCAA
1 TGAAATTAACACATATTATACCAA
* * * * *
757610 TGAACTTATCACATAGTTACAACAG
1 TGAAATTAACACATA-TTATACCAA
**
757635 TGAAATTTAACATGTATT-T-CCACTA
1 TGAAA-TTAACACATATTATACCA--A
* *
757660 GTGAAAGTAACACATACTATACCAA
1 -TGAAATTAACACATATTATACCAA
* * * * *
757685 TGAACTTATCGCATACTTACACCATT
1 TGAAATTAACACATA-TTATACCA-A
* * * ** * *
757711 TAAAAATAATATGTATTTACACCAT
1 TGAAATTAACACATA-TTATACCAA
*
757736 TGAAATTAACACATATTATACTAA
1 TGAAATTAACACATATTATACCAA
* * * *
757760 TGAACTTATCACATACTTACACCAG
1 TGAAATTAACACATA-TTATACCAA
* *
757785 TGAAATTTAATATATATT-TCCACCAA
1 TGAAA-TTAACACATATTAT--ACCAA
* *
757811 TGAAAGTAACACATATTATACCGA
1 TGAAATTAACACATATTATACCAA
* *
757835 TGAACTTATCACATA
1 TGAAATTAACACATA
757850 CTTACACATG
Statistics
Matches: 167, Mismatches: 59, Indels: 28
0.66 0.23 0.11
Matches are distributed among these distances:
23 2 0.01
24 58 0.35
25 59 0.35
26 45 0.27
27 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (24 bp):
TGAAATTAACACATATTATACCAA
Found at i:767872 original size:23 final size:23
Alignment explanation
Indices: 767839--767906 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
767829 CATATTATAT
767839 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* * *
767862 GGCACTGCGGTGCAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
*
767885 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
767907 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.29
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:771080 original size:25 final size:25
Alignment explanation
Indices: 771046--771099 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
771036 AAGGAATATA
*
771046 TCTTATCACTAATATCCTCAAGCTC
1 TCTTATCACTAATATCCTAAAGCTC
771071 TCTTATCACTAATATCCTAAAGCTC
1 TCTTATCACTAATATCCTAAAGCTC
771096 TCTT
1 TCTT
771100 GGTGCGCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.39
Consensus pattern (25 bp):
TCTTATCACTAATATCCTAAAGCTC
Found at i:772457 original size:92 final size:93
Alignment explanation
Indices: 772321--772601 Score: 325
Period size: 92 Copynumber: 3.0 Consensus size: 93
772311 GATGTTTATG
* *
772321 GAGATTAACTTATCCAAGTTGTTACATTAATGGATGAAAATTTGAATAGCGTTCAAATATCTTAA
1 GAGATTAACTTATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGCGTTCAAATATCTAAA
*
772386 CTAAACACTTTGATGTTTACGAACTATA
66 CTAAACACTTTGATGTTTACGAACTAAA
* * * * * * *
772414 -AGTTTAATTTATCTAAGTTGTTGCATTAATGGATGGAAGTTTGAATAACGTTGAAA-AGTCTAA
1 GAGATTAACTTATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGCGTTCAAATA-TCTAA
* * *
772477 ACTAAACAATTTGATGCTTATGAACTAAA
65 ACTAAACACTTTGATGTTTACGAACTAAA
* ** * *
772506 GAGATTAACTTATCCAAGTTGTTACATTAATGGATGTAAGTTTGAATAGAATTCAAATGTCTCAA
1 GAGATTAACTTATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGCGTTCAAATATCTAAA
* * **
772571 -TAAAATACGTTGATGTTTACGGCCTAAA
66 CT-AAACACTTTGATGTTTACGAACTAAA
772599 GAG
1 GAG
772602 TTAGTCCACA
Statistics
Matches: 153, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
91 1 0.01
92 78 0.51
93 74 0.48
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (93 bp):
GAGATTAACTTATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGCGTTCAAATATCTAAA
CTAAACACTTTGATGTTTACGAACTAAA
Found at i:773502 original size:19 final size:17
Alignment explanation
Indices: 773451--773490 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
773441 ACCTGACCTG
773451 AAATATTATATTTATTA
1 AAATATTATATTTATTA
773468 AAATATTATATTTATTA
1 AAATATTATATTTATTA
773485 AAATAT
1 AAATAT
773491 ATTATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATATTATATTTATTA
Found at i:773502 original size:23 final size:22
Alignment explanation
Indices: 773483--773538 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
773473 TTATATTTAT
*
773483 TAAAATATATTATTTTTATTCAA
1 TAAAA-ATAATATTTTTATTCAA
773506 TAAAAATAATA-TTTTATT-AA
1 TAAAAATAATATTTTTATTCAA
*
773526 AAGAAAATAATAT
1 TA-AAAATAATAT
773539 ACAGAGGAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 3 0.10
21 16 0.55
22 5 0.17
23 5 0.17
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAAATAATATTTTTATTCAA
Found at i:773522 original size:21 final size:20
Alignment explanation
Indices: 773452--773538 Score: 61
Period size: 21 Copynumber: 4.2 Consensus size: 20
773442 CCTGACCTGA
* * *
773452 AATATTATATTTATTAAAAT
1 AATATTTTATTAATAAAAAT
* *
773472 ATTATATTTATT-A-AAATAT
1 AATAT-TTTATTAATAAAAAT
*
773491 ATTATTTTTATTCAATAAAAAT
1 AATA-TTTTATT-AATAAAAAT
*
773513 AATATTTTATTAAAAGAAAAT
1 AATATTTTATTAATA-AAAAT
773534 AATAT
1 AATAT
773539 ACAGAGGAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
19 14 0.26
20 9 0.17
21 23 0.43
22 8 0.15
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (20 bp):
AATATTTTATTAATAAAAAT
Found at i:775909 original size:23 final size:23
Alignment explanation
Indices: 775879--775923 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
775869 TCACTCTTAG
*
775879 TTTTATATGAATTAAAACTAAAA
1 TTTTATATGAATTAAAAATAAAA
**
775902 TTTTATATTTATTAAAAATAAA
1 TTTTATATGAATTAAAAATAAA
775924 TATATGGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TTTTATATGAATTAAAAATAAAA
Found at i:777523 original size:8 final size:8
Alignment explanation
Indices: 777499--777532 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
777489 GCAGATATAT
777499 AACTCTCA
1 AACTCTCA
* *
777507 ATCTTTCA
1 AACTCTCA
777515 AACTCTCA
1 AACTCTCA
777523 AACTCTCA
1 AACTCTCA
777531 AA
1 AA
777533 AGGAGGCGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.29
Consensus pattern (8 bp):
AACTCTCA
Found at i:780603 original size:13 final size:13
Alignment explanation
Indices: 780585--780633 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
780575 AATAAAAAAA
*
780585 ATTAAATAGAAAC
1 ATTAAATACAAAC
*
780598 ATTAAATATAAAC
1 ATTAAATACAAAC
*
780611 ATTACAATTCAAAC
1 ATTA-AATACAAAC
780625 AATTAAATA
1 -ATTAAATA
780634 ATAAAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 16 0.53
14 10 0.33
15 4 0.13
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (13 bp):
ATTAAATACAAAC
Found at i:782892 original size:10 final size:10
Alignment explanation
Indices: 782877--782905 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
782867 AAATTAGTAC
782877 AATAAAATAT
1 AATAAAATAT
782887 AATAAAATAT
1 AATAAAATAT
782897 AATAAAATA
1 AATAAAATA
782906 ATAAACTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAAAATAT
Found at i:784249 original size:67 final size:62
Alignment explanation
Indices: 784169--784357 Score: 216
Period size: 62 Copynumber: 2.9 Consensus size: 62
784159 ATTTAGATAT
* * ** * * *
784169 ATTTTAATATTCAAATTTAAACATATAATAATTTTTTTAATTTGTAATATTCCAAAGATATAGAC
1 ATTTTACTATTCAAATTTAAA-A-A-AAT-A-TTATTTAATTTAAAATATTCAAAAGATATAAAA
784234 AC
61 AC
*
784236 ATTTTACTATTCAAATTTAAAAAGATATTATTTAATTTAAAATATTCAAAAGATATAAAAAC
1 ATTTTACTATTCAAATTTAAAAAAATATTATTTAATTTAAAATATTCAAAAGATATAAAAAC
* * *
784298 CTTTCACTATTCAAATTAAAAAAATATATTATTTAATTTAAAATATTCAAAAGTATATAA
1 ATTTTACTATTCAAATTTAAAAAA-ATATTATTTAATTTAAAATATTCAAAAG-ATATAA
784358 TTATCTTTAA
Statistics
Matches: 108, Mismatches: 12, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
62 49 0.45
63 29 0.27
64 8 0.07
65 1 0.01
66 1 0.01
67 20 0.19
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (62 bp):
ATTTTACTATTCAAATTTAAAAAAATATTATTTAATTTAAAATATTCAAAAGATATAAAAAC
Found at i:787216 original size:21 final size:22
Alignment explanation
Indices: 787192--787235 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
787182 TCATCCCTCA
787192 TTTA-TTCTTCTTTTACGTAAT
1 TTTATTTCTTCTTTTACGTAAT
787213 TTTATTTCTTCTTTTACGTAAT
1 TTTATTTCTTCTTTTACGTAAT
787235 T
1 T
787236 CAATGTGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.18, C:0.14, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTATTTCTTCTTTTACGTAAT
Found at i:788195 original size:12 final size:12
Alignment explanation
Indices: 788165--788204 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
788155 ATTAATATAT
*
788165 TTTAAATATTTTA
1 TTTAAA-ATATTA
*
788178 TGTAAAATATTA
1 TTTAAAATATTA
788190 TTTAAAATATTA
1 TTTAAAATATTA
788202 TTT
1 TTT
788205 TTTTACTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (12 bp):
TTTAAAATATTA
Found at i:788266 original size:14 final size:15
Alignment explanation
Indices: 788240--788284 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
788230 CGCTACTTAA
788240 AATAATTAATATTTTT
1 AATAA-TAATATTTTT
*
788256 AATAA-AATATTATT
1 AATAATAATATTTTT
*
788270 AATAATATTATTTTT
1 AATAATAATATTTTT
788285 TCTATCGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 13 0.52
15 7 0.28
16 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATAATAATATTTTT
Found at i:788569 original size:32 final size:32
Alignment explanation
Indices: 788526--788597 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 32
788516 GTTACACATG
** *
788526 TAAAATAATGATGTGATATTTGTCAAGTTATT
1 TAAAATAATGATGCAATATATGTCAAGTTATT
* *
788558 TAAAATGATGATGCAATATATGTCACGTTA-T
1 TAAAATAATGATGCAATATATGTCAAGTTATT
*
788589 TAAAGTAAT
1 TAAAATAAT
788598 AACATGTCAT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 8 0.24
32 25 0.76
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (32 bp):
TAAAATAATGATGCAATATATGTCAAGTTATT
Found at i:788965 original size:60 final size:60
Alignment explanation
Indices: 788891--789018 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 60
788881 ATTAGTCATT
* * * *
788891 AAACTTTTAAATATTTCAATTTTATCCCTAAATTATGA-CTATCATTCCAAATTAATTCTC
1 AAACTTTTAAATATTTCAATTTCATACCTAAACTATGATCT-TCATTCCAAATTAATTCCC
* * **
788951 AAACTTTTAAATATTTCGATTTCATACCTAAACTATGATCTTCATTCTAAATTGGTTCCC
1 AAACTTTTAAATATTTCAATTTCATACCTAAACTATGATCTTCATTCCAAATTAATTCCC
789011 AAACTTTT
1 AAACTTTT
789019 TGAAAATTCT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
60 57 0.97
61 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (60 bp):
AAACTTTTAAATATTTCAATTTCATACCTAAACTATGATCTTCATTCCAAATTAATTCCC
Found at i:790641 original size:2 final size:2
Alignment explanation
Indices: 790634--790661 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
790624 CTCACGTGAT
790634 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
790662 AGCTTCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:804362 original size:20 final size:20
Alignment explanation
Indices: 804314--804385 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
804304 AAATATAATT
*
804314 GTATCGATACTGCTATAACA
1 GTATCGATACTGTTATAACA
*
804334 GTACCGATACTGTTATAACA
1 GTATCGATACTGTTATAACA
* *
804354 GTATTGATACTGTTA-AAGAA
1 GTATCGATACTGTTATAA-CA
804374 GTATCGATACTG
1 GTATCGATACTG
804386 AAACCCAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 2 0.04
20 43 0.96
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACTGTTATAACA
Found at i:804586 original size:95 final size:95
Alignment explanation
Indices: 804431--804602 Score: 281
Period size: 95 Copynumber: 1.8 Consensus size: 95
804421 ATGCAGTATT
**
804431 GATACTGTCAAAATGGAATGCTAAAATAATACCGATACCATATATGATATCGATACTACTTAGAG
1 GATACTGTCAAAACAGAATGCTAAAATAATACCGATACCATATATGATATCGATACTACTTAGAG
804496 TAGTAGTACCGAAACTGTTGAGGCAGTACC
66 TAGTAGTACCGAAACTGTTGAGGCAGTACC
** * * *
804526 GATACTGTCAAAACAGAATGCTAAAATGGTATCGATACTATATATGATATCGATACTACTTAGAT
1 GATACTGTCAAAACAGAATGCTAAAATAATACCGATACCATATATGATATCGATACTACTTAGAG
804591 TAGTAGTACCGA
66 TAGTAGTACCGA
804603 TACTACTCAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 70 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (95 bp):
GATACTGTCAAAACAGAATGCTAAAATAATACCGATACCATATATGATATCGATACTACTTAGAG
TAGTAGTACCGAAACTGTTGAGGCAGTACC
Found at i:805814 original size:25 final size:25
Alignment explanation
Indices: 805774--805835 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 25
805764 TAACTTCAAG
805774 AAATATTTGTATATTAACTT-A-TTA
1 AAATATTT-TATATTAACTTAATTTA
805798 AATATATTTTATAATTAACTTAATTTA
1 AA-ATATTTTAT-ATTAACTTAATTTA
805825 AAATATTTTAT
1 AAATATTTTAT
805836 TTTATTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.15
25 14 0.41
26 10 0.29
27 5 0.15
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (25 bp):
AAATATTTTATATTAACTTAATTTA
Done.