Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008095.1 Hibiscus syriacus cultivar Beakdansim tig00110614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106976

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1500--1542
19
2.3
19
76
4
52
48
4
6
39
1.51
13540--13586
20
2.3
20
92
0
76
25
23
36
14
1.93
20141--20185
23
2.0
23
95
0
81
35
11
4
48
1.59
22736--22767
3
10.7
3
93
0
55
31
0
3
65
1.08
23397--23462
30
2.2
30
78
2
71
16
7
12
63
1.50
23414--23480
30
2.2
30
84
5
82
19
7
5
67
1.37
23477--23528
19
2.8
20
82
8
56
48
5
3
42
1.45
26346--26468
64
1.9
65
81
1
149
30
19
18
31
1.96
34356--34389
12
2.8
12
100
0
68
73
8
17
0
1.08
40657--40695
11
3.6
11
89
3
62
0
5
15
79
0.90
40678--40702
9
2.8
9
100
0
50
0
0
8
92
0.40
42750--42887
65
2.1
64
84
4
179
28
20
18
33
1.96
47326--47655
124
2.7
124
91
0
498
32
23
16
27
1.96
48081--48118
3
12.7
3
94
0
67
36
0
0
63
0.95
48395--48449
19
2.9
19
75
0
65
27
47
16
9
1.76
49605--49648
22
2.0
23
86
8
65
13
2
15
68
1.31
49644--49718
30
2.5
30
74
8
73
20
9
6
64
1.46
50463--50550
22
4.0
23
68
15
60
42
1
1
55
1.14
50713--50800
27
3.3
25
75
12
77
50
1
1
47
1.16
50866--50912
22
2.1
23
84
4
60
51
0
2
46
1.13
50839--50918
32
2.4
34
80
12
96
48
0
2
48
1.14
53797--53826
16
1.9
16
93
6
53
60
0
36
3
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58286--58349
17
3.9
16
75
16
60
71
6
18
3
1.20
58282--58361
32
2.5
32
84
11
94
75
5
16
3
1.13
58337--58387
12
4.2
12
80
10
50
82
3
11
1
0.89
58340--58395
14
4.0
14
84
9
60
82
5
10
1
0.91
58308--58389
20
4.0
19
70
21
58
79
4
12
3
1.02
62300--62424
29
4.3
28
77
7
108
36
7
9
46
1.64
63172--63343
63
2.7
63
78
8
188
29
15
15
40
1.88
64858--64904
16
3.3
14
77
13
51
59
25
0
14
1.36
72787--72824
17
2.2
18
90
4
60
63
21
0
15
1.31
72799--72838
21
1.9
21
89
0
62
62
20
0
17
1.33
74274--74313
21
1.9
21
89
0
62
62
20
0
17
1.33
74717--74756
12
3.3
12
89
0
62
22
25
45
7
1.78
74711--74756
18
2.6
18
85
0
56
23
26
43
6
1.78
81715--81773
23
2.6
23
69
0
64
28
20
32
18
1.96
86245--86290
20
2.2
21
88
3
67
23
13
17
45
1.83
88860--88912
6
8.7
6
78
12
54
77
3
16
1
1.01
89702--89752
27
1.9
27
88
4
77
33
17
17
31
1.94
89973--90030
30
2.0
29
86
6
82
17
6
3
72
1.21
91933--91971
16
2.4
16
84
12
53
33
2
2
61
1.23
100848--100956
31
3.4
31
65
22
80
35
17
22
24
1.95
100851--100980
66
2.0
66
87
3
190
33
18
23
23
1.97

Tables:   1

The End!