genome.fa.s8096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008096.1 Hibiscus syriacus cultivar Beakdansim tig00110616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  303958

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7891--8440	92	6.1	92	93	3	907	28	14	23	34	1.94
7901--8441	179	3.0	182	92	2	876	27	14	23	34	1.93
10975--11028	22	2.5	22	87	3	83	33	11	14	40	1.82
11702--12115	76	5.5	76	97	0	785	21	21	21	35	1.96
11702--12115	151	2.7	151	98	0	783	21	21	21	35	1.96
11702--12115	227	1.8	228	97	0	785	21	21	21	35	1.96
12241--12368	3	41.7	3	84	7	159	37	0	0	61	1.02
33226--33265	19	2.1	19	100	0	80	27	10	20	42	1.83
35536--35568	12	2.9	12	91	8	52	51	12	0	36	1.39
46463--46522	29	2.0	31	90	6	97	46	3	3	46	1.35
46469--46531	21	3.2	20	69	22	53	49	1	1	47	1.20
49841--49904	29	2.2	27	76	15	65	53	4	0	42	1.22
63567--63614	21	2.3	21	74	0	51	47	8	8	35	1.64
71482--71510	14	2.1	14	100	0	58	20	41	24	13	1.89
74500--74551	22	2.5	22	78	6	63	73	5	0	21	1.04
75067--75110	23	1.9	22	86	9	61	50	2	0	47	1.13
82118--82177	27	2.1	28	87	6	86	43	1	6	48	1.39
82342--82392	24	2.1	24	82	7	59	33	1	0	64	1.05
91475--91543	27	2.8	24	73	16	68	1	28	4	65	1.21
100093--100125	15	2.1	16	88	5	50	33	3	3	60	1.27
107752--107819	2	35.0	2	82	5	86	48	0	0	51	1.00
107820--107845	12	2.2	12	100	0	52	15	50	26	7	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110360--110391	16	2.1	15	94	5	55	53	15	6	25	1.65
111365--111426	32	1.9	32	100	0	124	45	16	6	32	1.72
111362--111454	32	2.9	32	85	1	98	47	13	4	34	1.63
126763--126884	62	2.0	62	88	3	183	29	9	10	50	1.67
128312--128353	21	2.0	21	90	4	68	57	2	0	40	1.12
131244--131540	75	4.0	75	90	0	441	20	28	23	27	1.99
136394--136441	19	2.4	19	89	6	69	33	14	16	35	1.89
136403--136460	15	3.6	15	76	17	62	43	12	12	32	1.79
136627--136683	21	2.7	21	86	0	87	28	24	26	21	1.99
136879--136933	13	4.2	13	75	13	58	49	12	3	34	1.59
136919--137017	33	3.0	32	91	4	153	45	14	7	33	1.71
137012--137051	21	1.9	21	89	0	62	45	7	17	30	1.76
139321--139364	23	2.0	23	86	4	63	27	13	18	40	1.88
140633--140678	23	1.9	25	86	8	69	50	2	13	34	1.53
144871--144910	21	2.0	20	90	9	64	40	10	5	45	1.60
155596--155678	31	2.6	31	75	9	87	44	4	4	45	1.46
156124--156156	17	1.9	17	93	0	57	27	12	24	36	1.91
158198--158391	5	38.4	5	93	2	253	59	6	0	33	1.23
175188--175212	12	2.1	12	100	0	50	52	8	0	40	1.31
177664--177721	20	2.6	22	89	10	84	31	20	22	25	1.98
178495--178546	18	2.9	18	91	0	86	19	19	32	28	1.96
186345--186388	2	22.0	2	85	0	61	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196809--196854	2	24.0	2	86	8	69	50	0	0	50	1.00
211556--211690	68	2.0	68	98	0	261	20	14	37	27	1.91
227430--227471	20	2.1	20	95	0	75	45	14	16	23	1.84
232614--232649	2	17.5	2	94	5	63	50	2	0	47	1.15
233711--233874	4	41.0	4	91	0	157	9	1	38	50	1.46
233800--234124	4	81.2	4	97	0	614	23	0	26	50	1.50
243481--243656	87	2.0	87	98	0	343	40	5	7	46	1.56
243840--243881	16	2.5	17	84	7	50	40	0	0	59	0.97
246662--246695	17	2.0	16	88	11	50	26	0	0	73	0.83
246706--246741	16	2.4	14	83	16	54	41	0	11	47	1.39
246711--246744	16	2.1	16	100	0	68	44	0	11	44	1.40
248793--248854	26	2.4	27	89	7	94	77	3	14	4	1.06
249721--250051	164	2.0	164	99	0	653	37	13	13	34	1.85
250528--250908	37	11.1	37	69	17	185	30	19	11	38	1.87
250528--250768	102	2.4	102	93	0	401	31	19	11	36	1.88
250651--251035	65	5.8	64	74	10	236	30	20	10	38	1.86
250717--250906	36	5.4	36	75	12	180	28	19	12	40	1.87
250549--250868	167	1.9	168	81	1	383	30	19	11	38	1.87
250629--251000	203	1.8	204	81	2	462	30	19	10	39	1.85
260302--260328	3	9.0	3	100	0	54	33	0	0	66	0.92
264927--265080	44	3.6	43	77	12	167	37	9	34	18	1.83
264895--265095	85	2.4	86	88	5	295	38	9	33	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265032--265167	72	1.9	71	98	1	263	41	9	30	19	1.83
265100--265286	45	4.2	45	82	4	238	40	9	33	17	1.81
270003--270200	56	3.6	55	87	3	272	27	17	14	40	1.88
285885--285939	12	4.6	12	95	0	101	10	16	49	23	1.77
285937--286008	37	1.9	38	86	8	103	41	0	0	58	0.98
285940--286061	32	3.7	33	74	7	104	43	0	0	56	0.99
286009--286059	8	6.9	7	93	6	59	47	0	0	52	1.00
286014--286056	2	22.0	2	95	4	79	48	0	0	51	1.00
287660--287706	22	2.1	22	84	4	58	31	4	4	59	1.36
289410--289456	21	2.2	20	85	7	58	36	0	4	59	1.17
293756--293792	18	2.0	20	89	10	60	54	5	5	35	1.47
299458--299492	14	2.4	15	85	9	54	54	0	5	40	1.24
302068--302148	3	25.7	3	75	14	56	38	2	1	58	1.20
302060--302152	7	13.3	7	72	10	57	36	2	2	59	1.22
302068--302152	10	8.5	10	73	10	75	37	2	1	58	1.18
302070--302148	13	5.7	13	73	18	61	39	2	1	56	1.21
302068--302148	16	5.1	16	71	13	69	38	2	1	58	1.20

Tables:   1

The End!