Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008099.1 Hibiscus syriacus cultivar Beakdansim tig00110627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 767286
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 5
Found at i:7235 original size:18 final size:17
Alignment explanation
Indices: 7181--7229 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
7171 TTGGATCCTT
* *
7181 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
7199 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
7217 AGTGCATTCGATG
1 AGTGCA-TCGATG
7230 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:7348 original size:65 final size:63
Alignment explanation
Indices: 7201--7356 Score: 176
Period size: 65 Copynumber: 2.5 Consensus size: 63
7191 TGCACTAAGA
*
7201 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCATAGTGCTCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCATAGTGCTCGATGCATGGCTG
* * * *
7264 GTGCATCGATGCATCAAATGTATTCGATGTTTTCATAAA-ATCC-TCAGTGCATCGGTGTATGG-
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCAT-AGTGC-TCGATGCATGGC
*
7326 TAT
62 T-G
*
7329 GTGCATCGATGCATGAAATGCA-TCGATG
1 GTGCATCGATGCATCAAATGCATTCGATG
7357 CTCAATTTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
63 28 0.35
64 20 0.25
65 32 0.40
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCATAGTGCTCGATGCATGGCTG
Found at i:21567 original size:18 final size:18
Alignment explanation
Indices: 21488--21560 Score: 92
Period size: 18 Copynumber: 3.9 Consensus size: 18
21478 ATTGAATATT
*
21488 TGTCCCGAAGGGCCACTA
1 TGTCCCGAAGGACCACTA
*
21506 TGTCCCGAAGGAACACTGA
1 TGTCCCGAAGGACCACT-A
* *
21525 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
21544 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
21561 GTTTCCCTCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
18 30 0.65
19 2 0.04
20 14 0.30
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:23073 original size:64 final size:63
Alignment explanation
Indices: 22950--23090 Score: 151
Period size: 64 Copynumber: 2.2 Consensus size: 63
22940 TCTTTAACAT
* * *
22950 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGG
1 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTTCATTTTAAAGA
* * * * ** *
23013 GATGCGTCGATGCACT-CCTTATGCATCGATGCACCAATTGCATTCGATG-TTTCTTCTTTAAAG
1 G-TGCATCGATGCACTACC-CATGCATCGATACACAAATCACATTCGATGTTTTCAT-TTTAAAG
23076 A
63 A
23077 GTGCATCGATGCAC
1 GTGCATCGATGCAC
23091 ATTCAATGTG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
63 20 0.31
64 44 0.69
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTTCATTTTAAAGA
Found at i:23103 original size:21 final size:21
Alignment explanation
Indices: 23077--23128 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
23067 TCTTTAAAGA
23077 GTGCATCGATGCACATTCAAT
1 GTGCATCGATGCACATTCAAT
23098 GTGCATCGATGCACATTCAAT
1 GTGCATCGATGCACATTCAAT
23119 GTGCATCGAT
1 GTGCATCGAT
23129 ACACCTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (21 bp):
GTGCATCGATGCACATTCAAT
Found at i:24398 original size:64 final size:63
Alignment explanation
Indices: 24275--24415 Score: 151
Period size: 64 Copynumber: 2.2 Consensus size: 63
24265 TCTTTAACAT
* * *
24275 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGG
1 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTTCATTTTAAAGA
* * * * ** *
24338 GATGCATCGATGTACT-CCTTATGCATCGATGCACCAATTGCATTCGATG-TTTCTTCTTTAAAG
1 G-TGCATCGATGCACTACC-CATGCATCGATACACAAATCACATTCGATGTTTTCAT-TTTAAAG
24401 A
63 A
24402 GTGCATCGATGCAC
1 GTGCATCGATGCAC
24416 ATTCAATGTG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
63 20 0.31
64 44 0.69
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (63 bp):
GTGCATCGATGCACTACCCATGCATCGATACACAAATCACATTCGATGTTTTCATTTTAAAGA
Found at i:25376 original size:19 final size:18
Alignment explanation
Indices: 25333--25376 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
25323 GGTGTAGGAA
25333 GAATTTTAAAATAGAGTT
1 GAATTTTAAAATAGAGTT
* *
25351 CATATTTTAAATTAGAGGTT
1 GA-ATTTTAAAATAGA-GTT
25371 GAATTT
1 GAATTT
25377 GACTTGTCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 16 0.76
20 4 0.19
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.43
Consensus pattern (18 bp):
GAATTTTAAAATAGAGTT
Found at i:25752 original size:64 final size:64
Alignment explanation
Indices: 25684--25847 Score: 188
Period size: 64 Copynumber: 2.6 Consensus size: 64
25674 ATTGTTCAAG
** * * **
25684 GTGTATCGATGCACCTGAAGTGTATCGATGCACTCTTTTAAAATAAAAACATCGAATGCGATCA
1 GTGTATCGATGCACAAGAAGTGCATCGATGCACCCGCTTAAAATAAAAACATCGAATGCGATCA
* * * *
25748 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCGCTTAAAATACAAACATCGAATGTGATTTA
1 GTGTATCGATGCACAAGAAGTGCATCGATGCACCCGCTTAAAATAAAAACATCGAATGCGA-TCA
* *
25813 -TGTACCGATGCA-TAGATAGTGCATCGATGCACCCG
1 GTGTATCGATGCACAAGA-AGTGCATCGATGCACCCG
25848 TCAAGGGATA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
63 2 0.02
64 81 0.95
65 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (64 bp):
GTGTATCGATGCACAAGAAGTGCATCGATGCACCCGCTTAAAATAAAAACATCGAATGCGATCA
Found at i:26441 original size:18 final size:18
Alignment explanation
Indices: 26418--26467 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
26408 GATTATCAAC
*
26418 GGTCCTTCGGGACATAGT
1 GGTCCTTCGGGACATAAT
26436 GGTCCTTCGGGACATAAT
1 GGTCCTTCGGGACATAAT
*
26454 GGTCTTTCGGGACA
1 GGTCCTTCGGGACA
26468 AATATTCAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (18 bp):
GGTCCTTCGGGACATAAT
Found at i:28043 original size:13 final size:13
Alignment explanation
Indices: 28025--28052 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
28015 CCAACTCTAG
28025 GACTTGCTTCTTT
1 GACTTGCTTCTTT
28038 GACTTGCTTCTTT
1 GACTTGCTTCTTT
28051 GA
1 GA
28053 AACCTTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.11, C:0.21, G:0.18, T:0.50
Consensus pattern (13 bp):
GACTTGCTTCTTT
Found at i:28838 original size:20 final size:20
Alignment explanation
Indices: 28809--28847 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
28799 AAAGCTCATA
*
28809 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
28829 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
28848 GTGTTGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:29568 original size:20 final size:20
Alignment explanation
Indices: 29539--29577 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
29529 AAAGCTCATA
*
29539 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
29559 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
29578 GTGTTGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:45842 original size:25 final size:25
Alignment explanation
Indices: 45748--45844 Score: 162
Period size: 25 Copynumber: 3.9 Consensus size: 25
45738 ATTGAGGGGA
*
45748 TTAGGG-TTGAAACCCTAATTTGTT
1 TTAGGGTTTGAAACCCTAATCTGTT
45772 TTAGGGTTTGAAACCCTAATC-GATT
1 TTAGGGTTTGAAACCCTAATCTG-TT
45797 TTAGGGTTTGAAACCCTAATCTGTT
1 TTAGGGTTTGAAACCCTAATCTGTT
45822 TTAGGGTTTGAAACCCTAATCTG
1 TTAGGGTTTGAAACCCTAATCTG
45845 ATGGGTTGGG
Statistics
Matches: 69, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
24 7 0.10
25 61 0.88
26 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAATCTGTT
Found at i:45970 original size:3 final size:3
Alignment explanation
Indices: 45957--46046 Score: 171
Period size: 3 Copynumber: 29.7 Consensus size: 3
45947 AATATGTAAT
45957 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
46003 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
46047 TACAAAAAAG
Statistics
Matches: 86, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
3 83 0.97
4 3 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:46411 original size:43 final size:43
Alignment explanation
Indices: 46345--46541 Score: 161
Period size: 43 Copynumber: 4.6 Consensus size: 43
46335 ATAACTCGGT
* *
46345 TCCTACGTGATGGGGACGA-CTGATTATCTATGGTTGACACGGC
1 TCCTACGTGATGAGGA-GATCTGGTTATCTATGGTTGACACGGC
** *
46388 TCCTACGTGATGAGGAGATCT-G--ATCTGGGGAATGACACGGC
1 TCCTACGTGATGAGGAGATCTGGTTATCTATGG-TTGACACGGC
* * * ** * * *
46429 TCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGT
1 TCCTACGTGATGAGGAGATCTGGTTATCT-ATGGT--TGACACGGC
* * *
46475 TCCTACGTGATGAGGACG-GCTGGTTATCTATGGTTGTCACGGA
1 TCCTACGTGATGAGGA-GATCTGGTTATCTATGGTTGACACGGC
46518 TCCTACGTGATGAGGAGATCTGGT
1 TCCTACGTGATGAGGAGATCTGGT
46542 CTGGTGATGA
Statistics
Matches: 121, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
40 6 0.05
41 27 0.22
42 4 0.03
43 44 0.36
44 4 0.03
45 6 0.05
46 29 0.24
47 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
TCCTACGTGATGAGGAGATCTGGTTATCTATGGTTGACACGGC
Found at i:46492 original size:130 final size:133
Alignment explanation
Indices: 46244--46570 Score: 432
Period size: 130 Copynumber: 2.5 Consensus size: 133
46234 CGTCTAAGGG
* * * *
46244 TGACATGGTTCCTACGTGATGAGGAAATCT-AGTC-GAGGGATGACACTGCTCATACATGATGAA
1 TGACACGGATCCTACGTGATGAGGAGATCTGA-TCTG-GGGATGACACGGCTCATACATGATGAA
* *
46307 GAGTTCTTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGGGGACGACTGATTAT
64 GAGTTCTTGGCCATC-TTA-GAAGGGTGATAACACGGTTCCTACGTGATGAGGACGACTGATTAT
46372 CTATGGT
127 CTATGGT
* *
46379 TGACACGGCTCCTACGTGATGAGGAGATCTGATCTGGGGAATGACACGGCTCATACGTGATGAAG
1 TGACACGGATCCTACGTGATGAGGAGATCTGATCTGGGG-ATGACACGGCTCATACATGATGAAG
* *
46444 AGTTC-TGGCCATC-TA-AA-GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTA
65 AGTTCTTGGCCATCTTAGAAGGGTGATAACACGGTTCCTACGTGATGAGGACGACTGATTATCTA
46505 TGGT
130 TGGT
* * * * *
46509 TGTCACGGATCCTACGTGATGAGGAGATCTGGTCTGGTGATGACACGGTTCCTACATGATGA
1 TGACACGGATCCTACGTGATGAGGAGATCTGATCTGGGGATGACACGGCTCATACATGATGA
46571 GGACGGCTGG
Statistics
Matches: 173, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
129 20 0.12
130 79 0.46
131 2 0.01
133 2 0.01
135 40 0.23
136 30 0.17
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (133 bp):
TGACACGGATCCTACGTGATGAGGAGATCTGATCTGGGGATGACACGGCTCATACATGATGAAGA
GTTCTTGGCCATCTTAGAAGGGTGATAACACGGTTCCTACGTGATGAGGACGACTGATTATCTAT
GGT
Found at i:46870 original size:35 final size:36
Alignment explanation
Indices: 46820--46957 Score: 109
Period size: 38 Copynumber: 3.8 Consensus size: 36
46810 CAAAGATTAG
* * *
46820 TGTTTCGAGAGAAACAAACTCAAAGA-TGTTTTTTT
1 TGTTTCAAGAAAAACAAACTCAAAGATTGTTTGTTT
* *
46855 TGTTTTAAGAAAAACATACTCAAAGACTTTGTTTGTTT
1 TGTTTCAAGAAAAACAAACTCAAAGA--TTGTTTGTTT
* * * ****
46893 TGTTTCAAGAAAAACAGATTCAAATGATGGTAAAATT
1 TGTTTCAAGAAAAACAAACTCAAA-GATTGTTTGTTT
*
46930 TGTTTCCAA-AGAAACAAACTCAAAGATT
1 TGTTT-CAAGAAAAACAAACTCAAAGATT
46958 TTTCTCAAAG
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
35 22 0.27
36 3 0.04
37 22 0.27
38 32 0.40
39 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (36 bp):
TGTTTCAAGAAAAACAAACTCAAAGATTGTTTGTTT
Found at i:47432 original size:69 final size:67
Alignment explanation
Indices: 47348--47474 Score: 202
Period size: 69 Copynumber: 1.9 Consensus size: 67
47338 AAGTTGTCTC
* *
47348 GAGAGACAAAATTTTGTTT-CAAAGGAAACAAACTCAATGGTTTTTTTGTTTCAAAAGAAATTAT
1 GAGAGACAAAATTTTGTTTCCAAA-GAAACAAACTCAA-AG-ATTTTTGTTTCAAAAGAAATTAT
47412 CTTAA
63 CTTAA
47417 GAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAA
1 GAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAA
47475 CAATCTCAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
67 18 0.33
68 1 0.02
69 32 0.58
70 4 0.07
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (67 bp):
GAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAATTATCTT
AA
Found at i:47469 original size:29 final size:28
Alignment explanation
Indices: 47423--47667 Score: 140
Period size: 28 Copynumber: 8.4 Consensus size: 28
47413 TTAAGAGAGA
*
47423 CAAA-ATTTTGTTTCCAAAGAAACAAACT
1 CAAAGATTTT-TTTTCAAAGAAACAAACT
*
47451 CAAAGATTTTTGTTTCAAAAGAAACAATCT
1 CAAAGATTTTT-TTTC-AAAGAAACAAACT
* * * * **
47481 CAAAGATTTTTTTCACAAAATTGTCTCAAGAGAGA
1 CAAAGATTTTTTT-TC-AAA--G---AAACAAACT
* * * *
47516 CAAA-ACTTTGTTTCAAAGTAAATAGACT
1 CAAAGATTTTTTTTCAAAG-AAACAAACT
47544 CAAAGA-TTTTTTTCAAACGAAAC-AACT
1 CAAAGATTTTTTTTCAAA-GAAACAAACT
* * *
47571 CACAGATTTTTATTCCAAAGGAACAAACT
1 CAAAGATTTTT-TTTCAAAGAAACAAACT
* * *
47600 CCAAGATTTTTATTCAAAAGGAACAAACT
1 CAAAGATTTTTTTTC-AAAGAAACAAACT
* *
47629 CGAAGA-TTTTTTTCAAGAGGAACAAACT
1 CAAAGATTTTTTTTCAA-AGAAACAAACT
47657 CAAAGATTTTT
1 CAAAGATTTTT
47668 CCTCAAAAGA
Statistics
Matches: 171, Mismatches: 29, Indels: 33
0.73 0.12 0.14
Matches are distributed among these distances:
27 10 0.06
28 61 0.36
29 53 0.31
30 29 0.17
32 4 0.02
33 1 0.01
34 6 0.04
35 7 0.04
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (28 bp):
CAAAGATTTTTTTTCAAAGAAACAAACT
Found at i:47545 original size:93 final size:90
Alignment explanation
Indices: 47405--47589 Score: 248
Period size: 93 Copynumber: 2.0 Consensus size: 90
47395 GTTTCAAAAG
* *
47405 AAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTGTTTCAAA
1 AAATTATCTCAAGAGAGACAAAACTTTGTTTCCAAAGAAACAAACTCAAAGA-TTTT-TTTCAAA
47470 AGAAACAATCTCAAAGATTTTT-TTCACA
64 AGAAACAA-CTCAAAGATTTTTATTC-CA
* * * *
47498 AAATTGTCTCAAGAGAGACAAAACTTTGTTT-CAAAGTAAATAGACTCAAAGATTTTTTTCAAAC
1 AAATTATCTCAAGAGAGACAAAACTTTGTTTCCAAAG-AAACAAACTCAAAGATTTTTTTCAAAA
*
47562 GAAACAACTCACAGATTTTTATTCCA
65 GAAACAACTCAAAGATTTTTATTCCA
47588 AA
1 AA
47590 GGAACAAACT
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
90 16 0.19
91 17 0.20
92 9 0.11
93 41 0.49
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.31
Consensus pattern (90 bp):
AAATTATCTCAAGAGAGACAAAACTTTGTTTCCAAAGAAACAAACTCAAAGATTTTTTTCAAAAG
AAACAACTCAAAGATTTTTATTCCA
Found at i:47557 original size:28 final size:27
Alignment explanation
Indices: 47541--47667 Score: 157
Period size: 29 Copynumber: 4.5 Consensus size: 27
47531 AAGTAAATAG
*
47541 ACTCAAAGATTTTTTTCAAACGAA-ACA
1 ACTCAAAGATTTTTTTCAAAGGAACA-A
*
47568 ACTCACAGATTTTTATTCCAAAGGAACAA
1 ACTCAAAGATTTTT-TT-CAAAGGAACAA
*
47597 ACTCCAAGATTTTTATTCAAAAGGAACAA
1 ACTCAAAGATTTTT-TTC-AAAGGAACAA
*
47626 ACTCGAAGATTTTTTTCAAGAGGAACAA
1 ACTCAAAGATTTTTTTCAA-AGGAACAA
47654 ACTCAAAGATTTTT
1 ACTCAAAGATTTTT
47668 CCTCAAAAGA
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
27 15 0.17
28 27 0.30
29 46 0.52
30 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (27 bp):
ACTCAAAGATTTTTTTCAAAGGAACAA
Found at i:47617 original size:57 final size:56
Alignment explanation
Indices: 47541--47679 Score: 176
Period size: 57 Copynumber: 2.4 Consensus size: 56
47531 AAGTAAATAG
*
47541 ACTCAAAGATTTTTTTCAAACGAAAC-AACTC-ACAGATTTTTATTCCAA-AGGAACAA
1 ACTCAAAGATTTTTTTCAAAAGAAACAAACTCGA-AGATTTTT-TT-CAAGAGGAACAA
* *
47597 ACTCCAAGATTTTTATTCAAAAGGAACAAACTCGAAGATTTTTTTCAAGAGGAACAA
1 ACTCAAAGATTTTT-TTCAAAAGAAACAAACTCGAAGATTTTTTTCAAGAGGAACAA
*
47654 ACTCAAAGATTTTTCCTCAAAAGAAA
1 ACTCAAAGATTTTT-TTCAAAAGAAA
47680 TTGTCTTTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
56 16 0.22
57 42 0.58
58 13 0.18
59 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (56 bp):
ACTCAAAGATTTTTTTCAAAAGAAACAAACTCGAAGATTTTTTTCAAGAGGAACAA
Found at i:48001 original size:36 final size:36
Alignment explanation
Indices: 47917--48020 Score: 117
Period size: 36 Copynumber: 3.0 Consensus size: 36
47907 GAGAAAATGA
* * *
47917 TGTCTCAAGCGAGACGAAATTTG-CTTTA-AGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
* *
47951 AGTCTCGAA-TGAGACAAAATTTGTTTTTAGAGAAAT
1 TGTCTC-AAGCGAGACAAAATTTGTTTTTAGAGAAAT
*
47987 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAA
48021 ACGATCTCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
34 17 0.29
35 14 0.24
36 27 0.47
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
Found at i:48029 original size:36 final size:36
Alignment explanation
Indices: 47918--48036 Score: 104
Period size: 36 Copynumber: 3.4 Consensus size: 36
47908 AGAAAATGAT
* * *
47918 GTCTCAAGCGAGACGAAATTTG-CTTTA-AGATATA-
1 GTCTCAAGCGAGACAAAATTTGTTTTTAGAGA-AAAC
* **
47952 GTCTCGAA-TGAGACAAAATTTGTTTTTAGAGAAATT
1 GTCTC-AAGCGAGACAAAATTTGTTTTTAGAGAAAAC
*
47988 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAAC
*
48023 GATCTCAAGTGAGA
1 G-TCTCAAGCGAGA
48037 TCAACTTTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
34 17 0.25
35 16 0.23
36 36 0.52
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (36 bp):
GTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAAC
Found at i:48046 original size:36 final size:36
Alignment explanation
Indices: 47961--48048 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 36
47951 AGTCTCGAAT
* **
47961 GAGACAAAATTTGTTTTTAGAGAAATTGTCTCAAGC
1 GAGACAAACTTTGTTTTTAGAGAAAACGTCTCAAGC
* *
47997 GAGACAAAGTTTGTTTTT-GAGAAAACGATCTCAAGT
1 GAGACAAACTTTGTTTTTAGAGAAAACG-TCTCAAGC
48033 GAGATC-AACTTTGTTT
1 GAGA-CAAACTTTGTTT
48049 AATGTGAAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
35 7 0.16
36 37 0.82
37 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (36 bp):
GAGACAAACTTTGTTTTTAGAGAAAACGTCTCAAGC
Found at i:48167 original size:105 final size:101
Alignment explanation
Indices: 47988--48220 Score: 283
Period size: 105 Copynumber: 2.3 Consensus size: 101
47978 TAGAGAAATT
*
47988 GTCTCAAGCGAGAC-AAAGTTTGTTTTTGAGAAAACGATCTCAAGTGAGATCAACTTTGTTTAAT
1 GTCTCAAGCGAGACGAAA-TTTG-TTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAAT
* *
48052 GTGAAGCAAATTCGAAATTTGGATCTCAAAGGGAAAAG
64 GTGAAGCAAATTCAAAATTTGGATCTCAAAGGAAAAAG
* *
48090 GTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACGAAATTTGTTTTG--AG-AA-AACAATCTCAA-GTGAGATCAACTTTGTTT
* * * *
48154 -TTAGTGAATCAAATTCAAAATTTGTATCTCAAAGGAAAAAT
61 AAT-GTGAAGCAAATTCAAAATTTGGATCTCAAAGGAAAAAG
*
48195 GTCTCAAGCGAGACGCAATTTGTTTT
1 GTCTCAAGCGAGACGAAATTTGTTTT
48221 AAAATTCTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
101 5 0.04
102 18 0.16
103 5 0.04
104 5 0.04
105 81 0.71
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (101 bp):
GTCTCAAGCGAGACGAAATTTGTTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAATGT
GAAGCAAATTCAAAATTTGGATCTCAAAGGAAAAAG
Found at i:48350 original size:156 final size:157
Alignment explanation
Indices: 48085--48372 Score: 409
Period size: 156 Copynumber: 1.8 Consensus size: 157
48075 TCTCAAAGGG
** * *
48085 AAAAGGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCTAAGGTGAGATTAATTTT
1 AAAAGGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCTAAAATGAGATCAACTTT
* * * *
48150 GTTTTTAGTGAATCAAATTCAAAATTTGTATCTCAAAGGAAAAATGTCTCAAGCGAGACGCAATT
66 GTTTATAGTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAAATGTCTCAAACGAGACGAAATT
48215 TGTTTTAAAATTCTCAAAATTTGTGGA
131 TGTTTTAAAATTCTCAAAATTTGTGGA
* * * *
48242 AAAATGTCTCAAGCGAGACGAAATTTGTTTTGAAATAAA-TACGATCTAAAATGAGATCAACTTT
1 AAAAGGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCTAAAATGAGATCAACTTT
* * * *
48306 GTTTA-ATGTGAAACAAATTCTAATTTTGTATCTTAAAGGAAAAATGTCTCAAATGAGACGAAAT
66 GTTTATA-GTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAAATGTCTCAAACGAGACGAAAT
48370 TTG
130 TTG
48373 CTTCAATAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
155 1 0.01
156 76 0.67
157 37 0.32
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (157 bp):
AAAAGGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCTAAAATGAGATCAACTTT
GTTTATAGTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAAATGTCTCAAACGAGACGAAATT
TGTTTTAAAATTCTCAAAATTTGTGGA
Found at i:48683 original size:4 final size:4
Alignment explanation
Indices: 48674--48715 Score: 70
Period size: 4 Copynumber: 11.0 Consensus size: 4
48664 TTTATGTATC
48674 ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
48716 GTATACTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
4 34 0.94
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:49926 original size:12 final size:11
Alignment explanation
Indices: 49898--49935 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
49888 TCCTCTTTTG
*
49898 TTCTTTGCTTT
1 TTCTTTGATTT
49909 TTCTTTGATTT
1 TTCTTTGATTT
49920 TTGCTTTGATTT
1 TT-CTTTGATTT
49932 TTCT
1 TTCT
49936 CTTTGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.05, C:0.13, G:0.11, T:0.71
Consensus pattern (11 bp):
TTCTTTGATTT
Found at i:50587 original size:26 final size:23
Alignment explanation
Indices: 50556--50626 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 23
50546 TCAAGGTGGA
50556 AAGAATATTTCAAGGTCTCAAAG
1 AAGAATATTTCAAGGTCTCAAAG
* *
50579 AGAGGGAATGTTTCAAGG--TCGAA-
1 A-A--GAATATTTCAAGGTCTCAAAG
50602 AAGAATATTTCAAGGTCTCAAAG
1 AAGAATATTTCAAGGTCTCAAAG
50625 AA
1 AA
50627 ATAGAATGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
20 12 0.32
22 5 0.13
23 4 0.11
24 5 0.13
26 12 0.32
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (23 bp):
AAGAATATTTCAAGGTCTCAAAG
Found at i:50612 original size:20 final size:20
Alignment explanation
Indices: 50544--50618 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
50534 AAATACAGTG
*
50544 TTTCAAGGT-GGAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
* *
50563 TTTCAAGGTCTCAAAGAGAGGGAATG
1 TTTCAAGG--TCGAA-A-A--GAATA
50589 TTTCAAGGTCGAAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
50609 TTTCAAGGTC
1 TTTCAAGGTC
50619 TCAAAGAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 8 0.18
20 14 0.32
21 1 0.02
22 2 0.05
23 2 0.05
24 5 0.11
26 12 0.27
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (20 bp):
TTTCAAGGTCGAAAAGAATA
Found at i:50632 original size:26 final size:25
Alignment explanation
Indices: 50555--50633 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
50545 TTCAAGGTGG
50555 AAAGAATATTTCAAGGTCTCAAAGA
1 AAAGAATATTTCAAGGTCTCAAAGA
** *
50580 GAGGGAATGTTTCAAGG--TC---GA
1 -AAAGAATATTTCAAGGTCTCAAAGA
50601 AAAGAATATTTCAAGGTCTCAAAGA
1 AAAGAATATTTCAAGGTCTCAAAGA
50626 AATAGAAT
1 AA-AGAAT
50634 GTCGAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
20 13 0.32
21 2 0.05
22 2 0.05
24 2 0.05
25 4 0.10
26 18 0.44
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAGAATATTTCAAGGTCTCAAAGA
Found at i:50634 original size:46 final size:45
Alignment explanation
Indices: 50542--50635 Score: 143
Period size: 46 Copynumber: 2.1 Consensus size: 45
50532 GTAAATACAG
* * *
50542 TGTTTCAAGGTGGAAAGAATATTTCAAGGTCTCAAAGAGAGGGAA
1 TGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAAAGAGAA
*
50587 TGTTTCAAGGTCGAAAAGAATATTTCAAGGTCTCAAAGAAATAGAA
1 TGTTTCAAGGT-GAAAAGAATATTTCAAGGTCTCAAAGAAAGAGAA
50633 TGT
1 TGT
50636 CGAAAATTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 11 0.25
46 33 0.75
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (45 bp):
TGTTTCAAGGTGAAAAGAATATTTCAAGGTCTCAAAGAAAGAGAA
Found at i:53122 original size:31 final size:32
Alignment explanation
Indices: 53066--53127 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
53056 TGACAAAATG
53066 ACACAAACAAAAGAGAAGAAATAAGTTAGTAT
1 ACACAAACAAAAGAGAAGAAATAAGTTAGTAT
53098 ACACAAACAAAAGAGAA-AAATAAGTTAGTA
1 ACACAAACAAAAGAGAAGAAATAAGTTAGTA
53128 CATGTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.61, C:0.10, G:0.15, T:0.15
Consensus pattern (32 bp):
ACACAAACAAAAGAGAAGAAATAAGTTAGTAT
Found at i:56667 original size:25 final size:25
Alignment explanation
Indices: 56573--56669 Score: 153
Period size: 25 Copynumber: 3.9 Consensus size: 25
56563 ATTGAGGGGA
*
56573 TTAGGG-TTGAAACCCTAATTTGTT
1 TTAGGGTTTGAAACCCTAATCTGTT
56597 TTAGGGTTTGAAACCCTAATC-GATT
1 TTAGGGTTTGAAACCCTAATCTG-TT
*
56622 TTAGGGTTTAAAACCCTAATCTGTT
1 TTAGGGTTTGAAACCCTAATCTGTT
56647 TTAGGGTTTGAAACCCTAATCTG
1 TTAGGGTTTGAAACCCTAATCTG
56670 ATGGGTTGGG
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.10
25 59 0.88
26 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAATCTGTT
Found at i:56798 original size:3 final size:3
Alignment explanation
Indices: 56790--56831 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
56780 ATTAATAAAC
56790 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
56832 TACAAAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62698 original size:3 final size:3
Alignment explanation
Indices: 62684--62715 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
62674 AAAGATATTC
*
62684 TCT TCA TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
62716 ATGTACGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:63324 original size:64 final size:64
Alignment explanation
Indices: 63251--63455 Score: 209
Period size: 64 Copynumber: 3.2 Consensus size: 64
63241 TGTTTGAATG
* * **
63251 TGCACCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGCAATTC
1 TGCATCGATGCATAGGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTC
63314 A
64 A
* * **
63315 TGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGG
1 TGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
* * ** * * * *
63379 TGCATCGATGTATAAGG-AGTGCATCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
1 TGCATCGATGCAT-AGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
*
63443 TGCACCGATGCAT
1 TGCATCGATGCAT
63456 CTCAACAATA
Statistics
Matches: 117, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
64 109 0.93
65 8 0.07
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (64 bp):
TGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
Found at i:63453 original size:45 final size:45
Alignment explanation
Indices: 63398--63501 Score: 199
Period size: 45 Copynumber: 2.3 Consensus size: 45
63388 GTATAAGGAG
*
63398 TGCATCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
1 TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
63443 TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
1 TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
63488 TGCACCGATGCATC
1 TGCACCGATGCATC
63502 AGTAGTGCAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (45 bp):
TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
Found at i:64214 original size:31 final size:31
Alignment explanation
Indices: 64176--64299 Score: 216
Period size: 31 Copynumber: 4.0 Consensus size: 31
64166 AGGGTCGAGG
64176 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
64207 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
64238 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
64269 GTTTACCTA-GATTCTTCGGGATC-TATGGACT
1 GTTTACCTATG-TTCTTCGGGA-CATATGGACT
64300 TGTCCTTCGG
Statistics
Matches: 91, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
30 1 0.01
31 89 0.98
32 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:72780 original size:64 final size:64
Alignment explanation
Indices: 72702--72891 Score: 213
Period size: 64 Copynumber: 3.0 Consensus size: 64
72692 TGATGTATTG
**
72702 GTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGACATCGAATGCAATTCATGCATCGATGCATA
1 GTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTCATGCATCGATGCATA
72765 A
64 A
* ** *
72766 GTAGTGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGGTGCATCGATGTATAA
1 GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAA
* * ** * * * * *
72830 GGAGTGCATCGATGCATCTCAACAATAATACAACATCGAATACATTTTATGCACCGATGCAT
1 GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCAT
72892 CTCAACAATA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
64 100 0.94
65 6 0.06
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (64 bp):
GTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGCATCGATGCATAA
Found at i:72889 original size:45 final size:45
Alignment explanation
Indices: 72834--72937 Score: 181
Period size: 45 Copynumber: 2.3 Consensus size: 45
72824 GTATAAGGAG
*
72834 TGCATCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
1 TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
*
72879 TGCACCGATGCATCTCAACAATAATACAACATCGAATATATTTTA
1 TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
*
72924 TGCACCGACGCATC
1 TGCACCGATGCATC
72938 AGTAGTGCAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (45 bp):
TGCACCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
Found at i:73654 original size:31 final size:31
Alignment explanation
Indices: 73612--73736 Score: 225
Period size: 31 Copynumber: 4.0 Consensus size: 31
73602 AGGGTCGAGG
*
73612 GTTTACATATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
73643 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
73674 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
73705 GTTTACCTA-GATTCTTCGGGACATATGGACT
1 GTTTACCTATG-TTCTTCGGGACATATGGACT
73736 G
1 G
73737 GTCCTTCGGG
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
30 1 0.01
31 91 0.99
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:75023 original size:64 final size:64
Alignment explanation
Indices: 74950--75173 Score: 231
Period size: 64 Copynumber: 3.5 Consensus size: 64
74940 TGTTTGAATG
* * ** *
74950 TGCACCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAGATATCGAATGCAATTC
1 TGCATCGATGCATAGGTAGTGCATCGATGCATC-CCATTAATAATAAA-ACATCGAATGCAATTC
75013 A
64 A
* * **
75014 TGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATGAAACATCGAATGCAATTGG
1 TGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
* ** * * * *
75078 TGCATCGATGCATAAGG-AGTGCATCGATGCATCTCAACAATAATACAACATCGAATACATTTTA
1 TGCATCGATGCAT-AGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
*
75142 TGCACCGATGCATCA-GTAGTGCATCGATGCAT
1 TGCATCGATGCAT-AGGTAGTGCATCGATGCAT
75174 ACCTTCATTA
Statistics
Matches: 135, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
63 1 0.01
64 126 0.93
65 8 0.06
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (64 bp):
TGCATCGATGCATAGGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCA
Found at i:75868 original size:31 final size:31
Alignment explanation
Indices: 75830--75931 Score: 195
Period size: 31 Copynumber: 3.3 Consensus size: 31
75820 AGGGTCGAGG
75830 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
75861 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
75892 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
75923 GTTTACCTA
1 GTTTACCTA
75932 GATGGTCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:77675 original size:29 final size:29
Alignment explanation
Indices: 77633--77696 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
77623 ATCAAACCAA
*
77633 AATTTATTTGAAAATTATTAACCGAACTG
1 AATTAATTTGAAAATTATTAACCGAACTG
*
77662 AATTAATTTGAAAATTATTAGCCGAACTG
1 AATTAATTTGAAAATTATTAACCGAACTG
77691 AATTAA
1 AATTAA
77697 CCGATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCGAACTG
Found at i:80222 original size:24 final size:25
Alignment explanation
Indices: 80168--80224 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
80158 TAAAAACCTG
*
80168 AATAAAACTAATTCTGAAAGATTAA
1 AATAAAACTAATTCTGAAAGACTAA
*
80193 AA-AAAAC-AATTTGTGAAAG-CTAA
1 AATAAAACTAA-TTCTGAAAGACTAA
80216 AATAAAACT
1 AATAAAACT
80225 TGTATGACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.25
Consensus pattern (25 bp):
AATAAAACTAATTCTGAAAGACTAA
Found at i:85449 original size:2 final size:2
Alignment explanation
Indices: 85442--85466 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
85432 TCATTCAATC
85442 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
85467 AATTATGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90234 original size:19 final size:18
Alignment explanation
Indices: 90174--90248 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
90164 TTTATGTTAG
90174 TATTTTT-TTAAATAGTTA
1 TATTTTTATTAAATA-TTA
90192 T-TATTTT-TT--ATATTAA
1 TAT-TTTTATTAAATATT-A
*
90208 TATATTTATGTAAATATTA
1 TATTTTTAT-TAAATATTA
*
90227 TATTTTTATTAAA-ATAA
1 TATTTTTATTAAATATTA
90244 TATTT
1 TATTT
90249 ATAAATTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.04
16 8 0.17
17 11 0.23
18 12 0.26
19 9 0.19
20 5 0.11
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
TATTTTTATTAAATATTA
Found at i:90246 original size:17 final size:19
Alignment explanation
Indices: 90205--90248 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
90195 TTTTTTATAT
*
90205 TAATATATTTATGTAAATA
1 TAATATTTTTATGTAAATA
*
90224 TTATATTTTTAT-TAAA-A
1 TAATATTTTTATGTAAATA
90241 TAATATTT
1 TAATATTT
90249 ATAAATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 4 0.18
19 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TAATATTTTTATGTAAATA
Found at i:90259 original size:33 final size:32
Alignment explanation
Indices: 90189--90267 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 32
90179 TTTTAAATAG
*
90189 TTATTATTTTTTATATTAATATATTTATGTAAA
1 TTATTATTTTTTATATAAATATATTTA-GTAAA
90222 -TATTATATTTTTAT-TAAAATAATATTTA-TAAA
1 TTATTAT-TTTTTATAT-AAAT-ATATTTAGTAAA
90254 TTATTATTTATTTA
1 TTATTATTT-TTTA
90268 GAATTATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
32 13 0.32
33 20 0.50
34 7 0.17
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (32 bp):
TTATTATTTTTTATATAAATATATTTAGTAAA
Found at i:92020 original size:21 final size:21
Alignment explanation
Indices: 91990--92037 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
91980 GCAGGGGTAC
* *
91990 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
92011 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
92032 ATGCCA
1 ATGCCA
92038 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:92067 original size:21 final size:21
Alignment explanation
Indices: 92041--92134 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
92031 TATGCCATCT
* *
92041 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
92062 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
92083 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
92104 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
92125 CCGCAGGGTT
1 CCGCAGGGTT
92135 TTATATCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:92716 original size:33 final size:34
Alignment explanation
Indices: 92657--92753 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
92647 AAATGTTTTT
*
92657 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
92691 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
92724 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
92754 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:92760 original size:34 final size:33
Alignment explanation
Indices: 92655--92760 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
92645 ATAAATGTTT
*
92655 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
92689 TAAAAATAAAAATAATATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
92721 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
92756 TTAAA
1 TTAAA
92761 TTTCAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:93539 original size:128 final size:128
Alignment explanation
Indices: 93140--93766 Score: 1163
Period size: 127 Copynumber: 4.9 Consensus size: 128
93130 AGTTATTCAA
*
93140 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
93205 GACGAAATAATGGAAGGCGCG-CCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
*
93267 ATTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
93332 GACGAAAT-ATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
93394 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
93459 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
93522 ACTGATATATCTAGTGTCCCCGA-GGACATGAATGACATAATAGGGCAATGAT-ACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
* * *
93585 AACGAAATAATGGAATGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
* *
93648 ACTGATATATCTAGTGTCCCCAAGGGATATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
93713 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAA
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAA
93767 CCGATTATAG
Statistics
Matches: 485, Mismatches: 11, Indels: 7
0.96 0.02 0.01
Matches are distributed among these distances:
126 105 0.22
127 241 0.50
128 139 0.29
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (128 bp):
ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGT
Found at i:93847 original size:8 final size:8
Alignment explanation
Indices: 93834--93872 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
93824 TCACAATCTT
93834 TCAAATTC
1 TCAAATTC
93842 TCAAATTC
1 TCAAATTC
* *
93850 CCAAACTC
1 TCAAATTC
93858 T-AAATTC
1 TCAAATTC
93865 TCAAATTC
1 TCAAATTC
93873 CCTGAAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.33
Consensus pattern (8 bp):
TCAAATTC
Found at i:97963 original size:16 final size:17
Alignment explanation
Indices: 97930--97968 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
97920 ATTATTAATA
97930 TAAAATATAAAAATATT
1 TAAAATATAAAAATATT
* *
97947 TAAATTATATAAA-ATT
1 TAAAATATAAAAATATT
97963 TAAAAT
1 TAAAAT
97969 TTTAACGTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAATATAAAAATATT
Found at i:99581 original size:18 final size:20
Alignment explanation
Indices: 99543--99582 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
99533 AATTTTTAAA
99543 ATTTAATAATCAAAGCAATT
1 ATTTAATAATCAAAGCAATT
*
99563 ATTTAAT-AT-AAATCAATT
1 ATTTAATAATCAAAGCAATT
99581 AT
1 AT
99583 AATTATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 2 0.11
20 7 0.37
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (20 bp):
ATTTAATAATCAAAGCAATT
Found at i:101384 original size:20 final size:20
Alignment explanation
Indices: 101359--101397 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
101349 TAATTTTTCA
101359 AAACGAATTTGATAAATTCT
1 AAACGAATTTGATAAATTCT
101379 AAACGAATTTGATAAATTC
1 AAACGAATTTGATAAATTC
101398 GAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (20 bp):
AAACGAATTTGATAAATTCT
Found at i:112254 original size:105 final size:104
Alignment explanation
Indices: 112062--112266 Score: 401
Period size: 105 Copynumber: 2.0 Consensus size: 104
112052 AGTGAAGATT
112062 AATTTTGAAATGGAAAATGTCCTGATTAATTTTGAGACGTTAGATTTATGGAATCTTATTTAATT
1 AATTTTGAAATGGAAAATGTCCTGATTAATTTTGAGACGTTAGATTTATGGAATCTTATTTAATT
112127 TATACAGCGAAAGCTGAAATCATATATTTATTTTTATTA
66 TATACAGCGAAAGCTGAAATCATATATTTATTTTTATTA
112166 AATTTTGAAATTGGAAAATGTCCTGATTAATTTTGAGACGTTAGATTTATGGAATCTTATTTAAT
1 AATTTTGAAA-TGGAAAATGTCCTGATTAATTTTGAGACGTTAGATTTATGGAATCTTATTTAAT
112231 TTATACAGCGAAAGCTGAAATCATATATTTATTTTT
65 TTATACAGCGAAAGCTGAAATCATATATTTATTTTT
112267 TATTTTTCAG
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
104 10 0.10
105 90 0.90
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (104 bp):
AATTTTGAAATGGAAAATGTCCTGATTAATTTTGAGACGTTAGATTTATGGAATCTTATTTAATT
TATACAGCGAAAGCTGAAATCATATATTTATTTTTATTA
Found at i:114414 original size:17 final size:17
Alignment explanation
Indices: 114382--114419 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
114372 ATTACCAATA
114382 AAAATATACATAAAATCT
1 AAAATATACATAAAAT-T
*
114400 AAAATATA-TTAAAATT
1 AAAATATACATAAAATT
114416 AAAA
1 AAAA
114420 AAAAAATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 6 0.32
18 8 0.42
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATATACATAAAATT
Found at i:114420 original size:17 final size:19
Alignment explanation
Indices: 114380--114420 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
114370 AAATTACCAA
114380 TAAAAATATACATAAAATC
1 TAAAAATATACATAAAATC
*
114399 T-AAAATATA-TTAAAAT-
1 TAAAAATATACATAAAATC
114415 TAAAAA
1 TAAAAA
114421 AAAAATTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.05
17 10 0.50
18 8 0.40
19 1 0.05
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAAATATACATAAAATC
Found at i:119442 original size:92 final size:92
Alignment explanation
Indices: 119285--119470 Score: 372
Period size: 92 Copynumber: 2.0 Consensus size: 92
119275 GTCTCGAAAA
119285 CTGAGTTCTTTGCTAGTGGCTTGAATCAAACTACCCTCGATCAAATCCGACTAGCCACTGGGTTT
1 CTGAGTTCTTTGCTAGTGGCTTGAATCAAACTACCCTCGATCAAATCCGACTAGCCACTGGGTTT
119350 AGAATGGCTCAGCTCCCTGTTAGATAT
66 AGAATGGCTCAGCTCCCTGTTAGATAT
119377 CTGAGTTCTTTGCTAGTGGCTTGAATCAAACTACCCTCGATCAAATCCGACTAGCCACTGGGTTT
1 CTGAGTTCTTTGCTAGTGGCTTGAATCAAACTACCCTCGATCAAATCCGACTAGCCACTGGGTTT
119442 AGAATGGCTCAGCTCCCTGTTAGATAT
66 AGAATGGCTCAGCTCCCTGTTAGATAT
119469 CT
1 CT
119471 AGGGGTTCCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (92 bp):
CTGAGTTCTTTGCTAGTGGCTTGAATCAAACTACCCTCGATCAAATCCGACTAGCCACTGGGTTT
AGAATGGCTCAGCTCCCTGTTAGATAT
Found at i:122406 original size:2 final size:2
Alignment explanation
Indices: 122399--122429 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
122389 TTCATACTTT
122399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
122430 TGTTTTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:124664 original size:16 final size:15
Alignment explanation
Indices: 124643--124689 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
124633 ATGAAATTAT
*
124643 TTAAAATTAAAAATA
1 TTAAAAATAAAAATA
124658 TTAAAAA-AAATGAATA
1 TTAAAAATAAA--AATA
124674 TTTAAAAATAAAAATA
1 -TTAAAAATAAAAATA
124690 GTATTAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 3 0.11
15 6 0.22
16 8 0.30
17 7 0.26
18 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (15 bp):
TTAAAAATAAAAATA
Found at i:124878 original size:32 final size:34
Alignment explanation
Indices: 124825--124887 Score: 78
Period size: 32 Copynumber: 1.9 Consensus size: 34
124815 TTTAGTATTA
124825 AAAATTTTAAAAAAATAATAAA-T-TTAAAATTT
1 AAAATTTTAAAAAAATAATAAAGTATTAAAATTT
* *
124857 AAAA-TTTAAAAATATTTATAAAGTATTAAAA
1 AAAATTTTAAAAA-AATAATAAAGTATTAAAA
124888 AATTAACAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
31 8 0.31
32 11 0.42
33 1 0.04
34 6 0.23
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (34 bp):
AAAATTTTAAAAAAATAATAAAGTATTAAAATTT
Found at i:130549 original size:38 final size:36
Alignment explanation
Indices: 130473--130549 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
130463 TTTTTATATT
*
130473 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
130509 TTTAATTTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAA-TTTTGTAAA-AAAATTATATAAATATTAT-CAA
130547 TTT
1 TTT
130550 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 5 0.14
37 21 0.60
38 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:144667 original size:21 final size:20
Alignment explanation
Indices: 144642--144691 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
144632 CCCCTAAAAA
144642 TTTTAAATTATCATATATATT
1 TTTTAAATTATC-TATATATT
* * *
144663 TTTTATATTTTCTTTATATT
1 TTTTAAATTATCTATATATT
144683 TTTATAAAT
1 TTT-TAAAT
144692 AATATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTAAATTATCTATATATT
Found at i:145411 original size:33 final size:33
Alignment explanation
Indices: 145362--145425 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
145352 ACTTTAAAGG
145362 AAAACAACAAAATTCTTAACCTCTAAGATCAAA
1 AAAACAACAAAATTCTTAACCTCTAAGATCAAA
* * *
145395 AAAATAACAAATTTCTTAACCTCTAATATCA
1 AAAACAACAAAATTCTTAACCTCTAAGATCA
145426 TTTAGTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.52, C:0.20, G:0.02, T:0.27
Consensus pattern (33 bp):
AAAACAACAAAATTCTTAACCTCTAAGATCAAA
Found at i:147798 original size:23 final size:23
Alignment explanation
Indices: 147767--147812 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
147757 AAAATGTTAG
* *
147767 ATAATAAATAAATTAAAGAAAAA
1 ATAAAAAATAAAATAAAGAAAAA
*
147790 ATAAAAAATAAAATAATGAAAAA
1 ATAAAAAATAAAATAAAGAAAAA
147813 TATTAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (23 bp):
ATAAAAAATAAAATAAAGAAAAA
Found at i:147814 original size:22 final size:23
Alignment explanation
Indices: 147767--147824 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
147757 AAAATGTTAG
*
147767 ATAATAAATAAATTAAAGAAAAA
1 ATAATAAATAAAATAAAGAAAAA
* *
147790 ATAAAAAATAAAATAATG-AAAA
1 ATAATAAATAAAATAAAGAAAAA
*
147812 ATATTAAATAAAA
1 ATAATAAATAAAA
147825 AGGAAAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 15 0.50
23 15 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (23 bp):
ATAATAAATAAAATAAAGAAAAA
Found at i:151152 original size:31 final size:32
Alignment explanation
Indices: 151018--151209 Score: 232
Period size: 32 Copynumber: 6.1 Consensus size: 32
151008 GAGTTGAGGG
* *
151018 TTACCAATGTCTTTCGGGACATATGGACAATA
1 TTACCTATGTCTTTCGGGACATATGGACAGTA
*
151050 TTACCTATGTCTTTTGGGACATATGGACAGTA
1 TTACCTATGTCTTTCGGGACATATGGACAGTA
* * *
151082 TTACCTACGTCTTTCGGGACATATAGATAGTA
1 TTACCTATGTCTTTCGGGACATATGGACAGTA
*
151114 TTACCTATGTCTTTCGGGACATATAGACAGT-
1 TTACCTATGTCTTTCGGGACATATGGACAGTA
* * *
151145 TTACCTATGT-TCTTCAGGACATATGAATAGT-
1 TTACCTATGTCT-TTCGGGACATATGGACAGTA
*
151176 TTATCTATGT-TCTTCGGGACATATGGACAG-A
1 TTACCTATGTCT-TTCGGGACATATGGACAGTA
151207 TTA
1 TTA
151210 TTATAAGAGC
Statistics
Matches: 141, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
30 1 0.01
31 54 0.38
32 86 0.61
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (32 bp):
TTACCTATGTCTTTCGGGACATATGGACAGTA
Found at i:151801 original size:75 final size:77
Alignment explanation
Indices: 151593--152704 Score: 585
Period size: 84 Copynumber: 13.7 Consensus size: 77
151583 TTGAGCTGAA
* * * * *
151593 TGTAATCGAACTCGAAGGTC-T-TTGGCAGATAACCCTTCTTGTCTTGAGCTATGCTGCAAATG-
1 TGTAATCGAACTCGAAGGTCTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGT
151655 ATGTGCCTTTGAGCTGCG
66 ATGTGCC-TTGA-----G
* * * * *
151673 TGTAATCGAACTCGAAGGTC-T-TTGGCAGATAGCCCTTCTTGCCTTGAGCTATGCTGCAAATGT
1 TGTAATCGAACTCGAAGGTCTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGT
151736 -T-T-CAC-TGAG
66 ATGTGC-CTTGAG
* * * *
151745 TGTAATCGATCTCAAAGGTCTTCGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTATAAAT-
1 TGTAATCGAACTCGAAGGTCTT-GTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATG
151809 TATGTGCCTTTGAG
65 TATGTGCC-TTGAG
* *
151823 CTGTAATCGAACTCGAA-GTCTTTGTTGACATATAACCCTTCTAGCCTTGAGTTATACTGTAAAT
1 -TGTAATCGAACTCGAAGGTC-TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAAT
151887 G-ATGTGCCTTTGAGCTGAG
64 GTATGTGCC--T----TGAG
* * * ** *
151906 TGTAATCGAACTCGAA-GTC-T-TTGGCAGATAACACTTCTTGCCTTGAGTTATATTGCAAATG-
1 TGTAATCGAACTCGAAGGTCTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGT
151967 ATGTGCCTTTGAGCTGAG
66 ATGTGCC--T----TGAG
* * * *
151985 TGTAATCGAACTTGAAGGTCTTTTGTTGGCAGAGAACCCTTCTAGCTTTGAGTTATGC---AAAT
1 TGTAATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAAT
152047 G-ATGTGCCTTAGAG
64 GTATGTGCCTT-GAG
* * * * *
152061 CTG-AGCATAGTCAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATGCTG
1 -TGTA--ATCG--AACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152125 CAAATGT-TGTGCCTTTGAGCTGAG
59 TAAATGTATGTGCC--T----TGAG
* * * *
152149 TGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAAT
1 TGTAATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAAT
*
152214 -AATGTGCCTTGGAGCTGAG
64 GTATGTGCC-T-----TGAG
* * ** * * * * * *
152233 TGTAGTCGAACTCGAAGGTCTTTTATTGGTAAATAACCCTTCTTGTCTCT-AGCTATGTTGCAAA
1 TGTAATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCT-TGAGTTATGCTGTAAA
152297 TG-ATGTGCCTTGGAG
63 TGTATGTGCCTT-GAG
* * *
152312 CTGAGCGTAGTCAAACTCGAAGGTCGTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
1 -T----GTAATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152377 CAAATG-ATGTGCCTTGGAGCTG
59 TAAATGTATGTGCCTT-GA---G
* * * * * *
152399 ACTGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGAT-ACCCTTCTCGCCTTGAGCTATACTGCAA
1 --TGTAATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAA
152463 ATGT-TGTGCCTTGAGCTGAG
62 ATGTATGTGCC-T----TGAG
* * * *
152483 TGTAATCGAACTCGAAGGTCTTTGTTGACAGAT-ACCCTTCTAGACTTGAGATATGTTATAAATG
1 TGTAATCGAACTCGAAGGTC-TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATG
152547 -ATGTGCCTTTGAG
65 TATGTGCC-TTGAG
* * * *
152560 TTGAGTGGAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCTTTCTTGCCTTGAGCTATGCTG
1 -T--GT--AATCGAACTCGAAGGTC--TTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152625 CAAATG-ATGTGCCTTTGAGCTGAG
59 TAAATGTATGTGCC--T----TGAG
* * ** *
152649 TGTAATCGAACTCGAAGGTCTTGGCTGACAGACAAATCTTCTCGCCTTGAGTTATG
1 TGTAATCGAACTCGAAGGTCTT-GTTGACAGATAACCCTTCTAGCCTTGAGTTATG
152705 TTGTCAATAG
Statistics
Matches: 867, Mismatches: 90, Indels: 147
0.79 0.08 0.13
Matches are distributed among these distances:
72 19 0.02
73 1 0.00
74 1 0.00
75 35 0.04
76 6 0.01
77 10 0.01
78 57 0.07
79 92 0.11
80 112 0.13
81 56 0.06
82 57 0.07
83 91 0.10
84 303 0.35
85 4 0.00
86 5 0.01
87 5 0.01
88 8 0.01
89 5 0.01
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (77 bp):
TGTAATCGAACTCGAAGGTCTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGT
ATGTGCCTTGAG
Found at i:152181 original size:84 final size:84
Alignment explanation
Indices: 151740--152670 Score: 1148
Period size: 84 Copynumber: 11.3 Consensus size: 84
151730 AAATGTTTCA
* * * * * *
151740 CTGAGTGTAATCGATCTCAAAGGTC-TTCGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTA
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
* *
151804 TAAATTATGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
* * *
151823 C----TGTAATCGAACTCGAA-GTC-TTTGTTGACATATAACCCTTCTAGCCTTGAGTTATACTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
151882 TAAATGATGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
* * **
151901 CTGAGTGTAATCGAACTCGAA-GTC---T-TTGGCAGATAACACTTCTTGCCTTGAGTTATATTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
151961 CAAATGATGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
* * *
151980 CTGAGTGTAATCGAACTTGAAGGTCTTTTGTTGGCAGAGAACCCTTCTAGCTTTGAGTTA---TG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152042 CAAATGATGTGCCTTAGAG
66 CAAATGATGTGCCTTTGAG
** * * * *
152061 CTGAGCATAGTC-AACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATGCTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152125 CAAATGTTGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
* *
152144 CTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
* *
152209 CAAATAATGTGCCTTGGAG
66 CAAATGATGTGCCTTTGAG
* * * * * * * *
152228 CTGAGTGTAGTCGAACTCGAAGGTCTTTTATTGGTAAATAACCCTTCTTGTCTCT-AGCTATGTT
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCT-TGAGTTATGCT
*
152292 GCAAATGATGTGCCTTGGAG
65 GCAAATGATGTGCCTTTGAG
* * * *
152312 CTGAGCGTAGTCAAACTCGAAGGTCGTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152377 CAAATGATGTGCCTTGGAG
66 CAAATGATGTGCCTTTGAG
* * * * *
152396 CTGACTGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGAT-ACCCTTCTCGCCTTGAGCTATACTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152460 CAAATGTTGTGCC-TTGAG
66 CAAATGATGTGCCTTTGAG
* * * * *
152478 CTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACAGAT-ACCCTTCTAGACTTGAGATATGTTA
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
*
152541 TAAATGATGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
* * * * *
152560 TTGAGTGGAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCTTTCTTGCCTTGAGCTATGCTG
1 CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
152625 CAAATGATGTGCCTTTGAG
66 CAAATGATGTGCCTTTGAG
152644 CTGAGTGTAATCGAACTCGAAGGTCTT
1 CTGAGTGTAATCGAACTCGAAGGTCTT
152671 GGCTGACAGA
Statistics
Matches: 738, Mismatches: 92, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
78 56 0.08
79 82 0.11
80 45 0.06
81 71 0.10
82 74 0.10
83 77 0.10
84 332 0.45
85 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (84 bp):
CTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTG
CAAATGATGTGCCTTTGAG
Found at i:152254 original size:248 final size:245
Alignment explanation
Indices: 151573--152670 Score: 1267
Period size: 248 Copynumber: 4.5 Consensus size: 245
151563 GTTGTAAATT
* * ** *
151573 TGATATGCATTTGAGCTGAATGTAATCGAACTCGAAGGTC---T-TTGGCAGATAACCCTTCTTG
1 TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
* *
151634 TCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGCGTGTAATCGAACTCGAAGGTC--TTTG
66 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTG
* * * *
151697 GCAGATAGCCCTTCTTGCCTTGAGCTATGCTGC--A-AATGT---TTCA-CTGAGTGTAATCGAT
131 GCAGATAACCCTTCTTGCCTTGAGCTATACTGCAAATAATGTGCCTTGAGCTGAGTGTAATCGAA
* * *
151755 CTCAAAGGTCTTCGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTATAAA
196 CTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTTAGTTATGC---AAA
* * *
151808 TTATGTGCCTTTGAGCT----GTAATCGAACTCGAA-GTC-TTTGTTGACATATAACCCTTCTAG
1 TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
* * *
151867 CCTTGAGTTATACTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAA-GTC--TTTG
66 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTG
* * * *
151929 GCAGATAACACTTCTTGCCTTGAGTTATATTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGA
131 GCAGATAACCCTTCTTGCCTTGAGCTATACTGCAAATAATGTGCC-TTGAGCTGAGTGTAATCGA
* * *
151994 ACTTGAAGGTCTTTTGTTGGCAGAGAACCCTTCTAG-CTTTGAGTTATGCAAA
195 ACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGACTTT-AGTTATGCAAA
* * * * *
152046 TGATGTGCCTTAGAGCTGAGCATAGTC-AACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCG
1 TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
*
152110 CCTTGAGCTATGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTAT
66 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTT-T
* * * * *
152175 TGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTGGAGCTGAGTGTAGTC
129 TGGCAGATAACCCTTCTTGCCTTGAGCTATACTGCAAATAATGTGCCTT-GAGCTGAGTGTAATC
* ** * * * * *
152240 GAACTCGAAGGTCTTTTATTGGTAAATAACCCTTCTTGTCTCTAGCTATGTTGCAAA
193 GAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGACTTTAG-T-T-ATGCAAA
* * * *
152297 TGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCGTTTGTTGGCAGATAACCCTTCTAG
1 TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
* * * *
152362 CCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGACTGTAGTCGAACTCGAAGGTCTTTTGT
66 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTT-T
* **
152427 TGGCAGAT-ACCCTTCTCGCCTTGAGCTATACTGCAAATGTTGTGCCTTGAGCTGAGTGTAATCG
129 TGGCAGATAACCCTTCTTGCCTTGAGCTATACTGCAAATAATGTGCCTTGAGCTGAGTGTAATCG
* * *
152491 AACTCGAAGGTCTTTGTTGACAGAT-ACCCTTCTAGACTTGAGATATGTTATAAA
194 AACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTTAGTTATG---CAAA
* * * * *
152545 TGATGTGCCTTTGAGTTGAGTGGAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCTTTCTTG
1 TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
152610 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT
66 CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT
152671 GGCTGACAGA
Statistics
Matches: 737, Mismatches: 93, Indels: 54
0.83 0.11 0.06
Matches are distributed among these distances:
230 3 0.00
231 15 0.02
232 36 0.05
233 67 0.09
234 1 0.00
235 18 0.02
238 18 0.02
239 3 0.00
240 26 0.04
241 37 0.05
242 7 0.01
243 71 0.10
244 3 0.00
245 2 0.00
246 1 0.00
247 5 0.01
248 217 0.29
249 13 0.02
250 28 0.04
251 65 0.09
252 101 0.14
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (245 bp):
TGATGTGCCTTTGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
CCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTG
GCAGATAACCCTTCTTGCCTTGAGCTATACTGCAAATAATGTGCCTTGAGCTGAGTGTAATCGAA
CTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTTAGTTATGCAAA
Found at i:152554 original size:416 final size:410
Alignment explanation
Indices: 151585--152670 Score: 1299
Period size: 416 Copynumber: 2.7 Consensus size: 410
151575 ATATGCATTT
* * *
151585 GAGCTGAATGTAATCGAACTCGAAGGTC---T-TTGGCAGATAACCCTTCTTGTCTTGAGCTATG
1 GAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGGCAGAT-ACCCTTCTAGCCTTGAGCTATA
*
151646 CTGCAAATGATGTGCCTTTGAGCTGCGTGTAATCGAACTCGAAGGTCTTTG--GCAGATAGCCCT
65 CTGCAAATGATGTGCC-TTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGCAGATAGCCCT
* * * *
151709 TCTTGCCTTGAGCTATGCTGC-AA--A--TG--TTTCA-CTGAGTGTAATCGATCTCAAAGGTC-
129 TCTAGCCTTGAGCTATGCT-CAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCT
* * * ** *
151765 TTCGTTGACAGATAACCCTTCTAGCCTTTAGTTATGCTATAAATTATGTGCCTTTGAGC----TG
193 TTTGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTTGAGCTGAGTG
* * * *
151826 TAATCGAACTCGAA-GTC-TTTGTTGACATATAACCCTTCTAGCCTTGAGTTATACTGTAAATGA
258 TAATCGAACTCGAAGGTCTTTTATTGACAAATAACCCTTCTAGCCTTGAGCTATACTGCAAATGA
* * * *
151889 TGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGTCTTTGGCAGATAACACTTCTTGCCTTGAGT
323 TGTGCCTTGGAGCTGAGCGTAATCAAACTCGAAGTCTTTGGCAGATAACACTTCTAGCCTTGAGT
* *
151954 TATATTGCAAATGATGTGCCTTT
388 TATACTGCAAATGATGTGCCTTG
* * * *
151977 GAGCTGAGTGTAATCGAACTTGAAGGTCTTTTGTTGGCAGAGAACCCTTCTAGCTTTGAG-T-TA
1 GAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGGCAGA-TACCCTTCTAGCCTTGAGCTATA
** *
152040 -TGCAAATGATGTGCCTTAGAGCTGAGCATAGTC-AACTCGAAGGTCTTTTGTTGGCAGATAGCC
65 CTGCAAATGATGTGCCTT-GAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTT-GCAGATAGCC
* *
152103 CTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
127 CTTCTAGCCTTGAGCTATGCT-CAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
* *
152168 CTTTTATTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTGGAGCTGAG
191 CTTTTGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTTGAGCTGAG
* ** * * **
152233 TGTAGTCGAACTCGAAGGTCTTTTATTGGTAAATAACCCTTCTTGTCTCT-AGCTATGTTGCAAA
256 TGTAATCGAACTCGAAGGTCTTTTATTGACAAATAACCCTTCTAGCCT-TGAGCTATACTGCAAA
* *
152297 TGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCGTTTGTTGGCAGATAACCCTTCTAG
320 TGATGTGCCTTGGAGCTGAGCGTAATCAAACTCGAA-GTC---T-TTGGCAGATAACACTTCTAG
*
152362 CCTTGAGTTATGCTGCAAATGATGTGCCTTG
380 CCTTGAGTTATACTGCAAATGATGTGCCTTG
* * *
152393 GAGCTGACTGTAGTCGAACTCGAAGGTCTTTTGTTGGCAGATACCCTTCTCGCCTTGAGCTATAC
1 GAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATACCCTTCTAGCCTTGAGCTATAC
*
152458 TGCAAATGTTGTGCCTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATA-CCCTT
66 TGCAAATGATGTGCCTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTG-CAGATAGCCCTT
* * * * * *
152522 CTAGACTTGAGATATGTTATAAATGATGTGCCTTTGAGTTGAGTGGAATCGAACTCGAAGGTCTT
130 CTAGCCTTGAGCTATGCT-CAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTT
* * * * *
152587 TTGTTGGCAGATAACCTTTCTTGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGT
194 TTGTTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTTGAGCTGAGTGT
152652 AATCGAACTCGAAGGTCTT
259 AATCGAACTCGAAGGTCTT
152671 GGCTGACAGA
Statistics
Matches: 587, Mismatches: 71, Indels: 48
0.83 0.10 0.07
Matches are distributed among these distances:
392 40 0.07
393 30 0.05
394 1 0.00
395 2 0.00
396 54 0.09
397 2 0.00
401 2 0.00
403 4 0.01
404 23 0.04
405 51 0.09
409 15 0.03
410 3 0.01
411 63 0.11
412 4 0.01
415 16 0.03
416 223 0.38
417 26 0.04
418 28 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (410 bp):
GAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATACCCTTCTAGCCTTGAGCTATAC
TGCAAATGATGTGCCTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGCAGATAGCCCTTC
TAGCCTTGAGCTATGCTCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT
GTTGGCAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATAATGTGCCTTTGAGCTGAGTGTAA
TCGAACTCGAAGGTCTTTTATTGACAAATAACCCTTCTAGCCTTGAGCTATACTGCAAATGATGT
GCCTTGGAGCTGAGCGTAATCAAACTCGAAGTCTTTGGCAGATAACACTTCTAGCCTTGAGTTAT
ACTGCAAATGATGTGCCTTG
Found at i:154114 original size:98 final size:96
Alignment explanation
Indices: 153807--154124 Score: 408
Period size: 98 Copynumber: 3.3 Consensus size: 96
153797 GGCTAGCTGA
** * * * *
153807 ATCCATAAAGCCAGGACGTTTAACCAATTGCTCTATAGGGATAACTTAATATCCTTGTATAGATA
1 ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAA-AT-CTTGTATATATA
* *
153872 TTATAATCACCTTTATCAGGTTATCTGAATATT
64 TTATAATCACCTTTATCAGGCTAGCTGAATATT
* * * *
153905 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGT-TT-TATTGTATAT
1 ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAATCTTGTA-TATATAT
*
153968 TATAATCA-CTTTATCAGGCTAGCTGAATCTT
65 TATAATCACCTTTATCAGGCTAGCTGAATATT
* * * *
153999 ATCCATAAAGTTAGGGCGTTTAACCAATTGCTTTAGAGGGATATCTCAACATCATTGTATATATA
1 ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAA-ATC-TTGTATATATA
154064 TTATAATCACCTTTATCAGGCTAGCTGAATATT
64 TTATAATCACCTTTATCAGGCTAGCTGAATATT
*
154097 ATCTATAAAGCTGGGGCGTTTAACCAAT
1 ATCCATAAAGCTGGGGCGTTTAACCAAT
154125 AGGGACAACT
Statistics
Matches: 191, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
94 65 0.34
95 16 0.08
97 17 0.09
98 93 0.49
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (96 bp):
ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAATCTTGTATATATATT
ATAATCACCTTTATCAGGCTAGCTGAATATT
Found at i:154254 original size:192 final size:186
Alignment explanation
Indices: 153823--154257 Score: 511
Period size: 192 Copynumber: 2.3 Consensus size: 186
153813 AAAGCCAGGA
* * * * * * *
153823 CGTTTAACCAATTGCTCTATAGGGATAA-CTTAATATCCTTGTATAGATATTATAATCACCTTTA
1 CGTTTAACCAATTGCTTTAGAGGGA-AATCTCAACATCATTATATATATATTATAATCACCTTTA
* *
153887 TCAGGTTATCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTC
65 TCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAA----T-TA-AGGGACAACTC
* * * * *
153952 AAGTTTTATTGTATATTATAATCACTTTATCAGGCTAGCTGAATCTTATCCATAAAGTTAGGG
124 AAGCTTTATTGTATATTATAATCACTTTATCAGGCTAGCTGAAACTTATCCAAAAAGCTAGAG
* *
154015 CGTTTAACCAATTGCTTTAGAGGGATATCTCAACATCATTGTATATATATTATAATCACCTTTAT
1 CGTTTAACCAATTGCTTTAGAGGGAAATCTCAACATCATTATATATATATTATAATCACCTTTAT
* * *
154080 CAGGCTAGCTGAATATTATCTATAAAGCTGGGGCGTTTAACCAA-T-AGGGACAACTCGAGCTTT
66 CAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTAAGGGACAACTCAAGCTTT
154143 ATTGTATATTATAATCACTTTTATCAGGCTAGCTGAAACTTATCCAAAAAGCCT-GAG
131 ATTGTATATTATAATCAC-TTTATCAGGCTAGCTGAAACTTATCCAAAAAG-CTAGAG
* * * * *
154200 TGTTTAACCATTTGCTTTAGAGGGACAAT-TCAAGCTTTATTGTATATATATATATAAT
1 CGTTTAACCAATTGCTTTAGAGGGA-AATCTCAA-CATCATTATATATATAT-TATAAT
154258 ATTATAATCT
Statistics
Matches: 215, Mismatches: 22, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
184 34 0.16
185 59 0.27
186 19 0.09
187 6 0.03
191 1 0.00
192 96 0.45
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (186 bp):
CGTTTAACCAATTGCTTTAGAGGGAAATCTCAACATCATTATATATATATTATAATCACCTTTAT
CAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTAAGGGACAACTCAAGCTTT
ATTGTATATTATAATCACTTTATCAGGCTAGCTGAAACTTATCCAAAAAGCTAGAG
Found at i:156841 original size:48 final size:47
Alignment explanation
Indices: 156789--156892 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 47
156779 AAAATGTTAG
156789 ATAAAAATAATAAAGAAAAAATCA-AAGA-AAAAAAGAAAAAAATAAACA
1 ATAAAAATAATAAAGAAAAAAT-ATAA-ATAAAAAAGAAAAAAAT-AACA
* * *
156837 ATAAATAA-AATAATGAAAAAATATTAAATAAAAAGGAAAACAATAACA
1 ATAAA-AATAATAAAGAAAAAATA-TAAATAAAAAAGAAAAAAATAACA
156885 ATAAAAAT
1 ATAAAAAT
156893 TCGGGAGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
47 3 0.06
48 28 0.58
49 17 0.35
ACGTcount: A:0.75, C:0.04, G:0.06, T:0.15
Consensus pattern (47 bp):
ATAAAAATAATAAAGAAAAAATATAAATAAAAAAGAAAAAAATAACA
Found at i:157866 original size:18 final size:18
Alignment explanation
Indices: 157845--157887 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
157835 TGAATAACAT
157845 AATATATGCATATAATAC
1 AATATATGCATATAATAC
157863 AATATATGCATATAATAC
1 AATATATGCATATAATAC
*
157881 TATATAT
1 AATATAT
157888 TATACGCGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (18 bp):
AATATATGCATATAATAC
Found at i:160093 original size:23 final size:23
Alignment explanation
Indices: 160054--160098 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
160044 TTTATTTATT
*
160054 TTGATTATAGTTCTACAAATATA
1 TTGATTATAGTTATACAAATATA
*
160077 TTGATTAT-GATTATACATATAT
1 TTGATTATAG-TTATACAAATAT
160099 TCCATCTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (23 bp):
TTGATTATAGTTATACAAATATA
Found at i:167548 original size:55 final size:53
Alignment explanation
Indices: 167456--167558 Score: 138
Period size: 53 Copynumber: 1.9 Consensus size: 53
167446 TACAATTAAT
*
167456 ATAATTATATTATTTTAAATTTATAATAAACTAATGATAATTAAATTATTATA
1 ATAATTAAATTATTTTAAATTTATAATAAACTAATGATAATTAAATTATTATA
*
167509 ATAATTAAATTATTTTTGAAA-TT-TAATAAATTATTATGATAATTAAATTA
1 ATAATTAAATTA-TTTT-AAATTTATAATAAACTA--ATGATAATTAAATTA
167559 ATATGATTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
53 20 0.45
54 6 0.14
55 18 0.41
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.48
Consensus pattern (53 bp):
ATAATTAAATTATTTTAAATTTATAATAAACTAATGATAATTAAATTATTATA
Found at i:167563 original size:17 final size:17
Alignment explanation
Indices: 167489--167565 Score: 75
Period size: 17 Copynumber: 4.3 Consensus size: 17
167479 TAATAAACTA
167489 ATGATAATTAAATTATT
1 ATGATAATTAAATTATT
*
167506 ATAATAATTAAATTATTT
1 ATGATAATTAAATTA-TT
*
167524 TTGA-AATTTAATAAATTATT
1 ATGATAA--T--TAAATTATT
*
167544 ATGATAATTAAATTAAT
1 ATGATAATTAAATTATT
167561 ATGAT
1 ATGAT
167566 TACATTTAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
17 29 0.59
18 4 0.08
19 2 0.04
20 5 0.10
21 9 0.18
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
ATGATAATTAAATTATT
Found at i:169972 original size:2 final size:2
Alignment explanation
Indices: 169965--169997 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
169955 GACCTCGGAT
*
169965 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
169998 GACAACTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:171154 original size:33 final size:33
Alignment explanation
Indices: 171111--171294 Score: 198
Period size: 33 Copynumber: 5.5 Consensus size: 33
171101 TGTATATATC
* *
171111 ATATACTATATAGGTTATATATACTAATGAACT
1 ATATAATATATAGTTTATATATACTAATGAACT
171144 ATATAATATATAGTTTATATATACTAATGAACT
1 ATATAATATATAGTTTATATATACTAATGAACT
*
171177 ATAT-ATATATAGTTTATATATACTAGTGAACT
1 ATATAATATATAGTTTATATATACTAATGAACT
* *
171209 ATAT-ATAATGCATAGTTTATATATACCATAT-AGTCT
1 ATATAAT-AT--ATAGTTTATATATACTA-ATGA-ACT
* *
171245 ATATATATCATATAG-TT-TATATACTGATAAACT
1 ATATA-AT-ATATAGTTTATATATACTAATGAACT
*
171278 ATATAATGTATAGTTTA
1 ATATAATATATAGTTTA
171295 GGGTTTAGGG
Statistics
Matches: 130, Mismatches: 11, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
31 5 0.04
32 37 0.28
33 46 0.35
34 8 0.06
35 19 0.15
36 11 0.08
38 4 0.03
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (33 bp):
ATATAATATATAGTTTATATATACTAATGAACT
Found at i:171186 original size:56 final size:54
Alignment explanation
Indices: 171072--171187 Score: 146
Period size: 56 Copynumber: 2.1 Consensus size: 54
171062 TATATAAATT
* *
171072 TATATACTAATGAACTATATAATATAGTTTGTATATATCATATACTATATAGGTTA
1 TATATACTAATGAACTATATAATATAGTTTATATATATAATATACTATATA-G-TA
171128 TATATACTAATGAACTATATAATATATAGTTTATATATACTAATGA-ACTATATA-TA
1 TATATACTAATGAACTATAT-A-ATATAGTTTATATATA-TAAT-ATACTATATAGTA
171184 TATA
1 TATA
171188 GTTTATATAT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
56 26 0.48
57 1 0.02
58 15 0.28
59 11 0.20
60 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (54 bp):
TATATACTAATGAACTATATAATATAGTTTATATATATAATATACTATATAGTA
Found at i:171241 original size:18 final size:18
Alignment explanation
Indices: 171220--171267 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
171210 TATATAATGC
171220 ATAGTTTATATATACCAT
1 ATAGTTTATATATACCAT
* *
171238 ATAGTCTATATATATCAT
1 ATAGTTTATATATACCAT
171256 ATAGTTTATATA
1 ATAGTTTATATA
171268 CTGATAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (18 bp):
ATAGTTTATATATACCAT
Found at i:171281 original size:67 final size:63
Alignment explanation
Indices: 171111--171294 Score: 192
Period size: 67 Copynumber: 2.7 Consensus size: 63
171101 TGTATATATC
* *
171111 ATATACTATATAGGTTATATATACTAATGAACTATATAATATATAGTTTATATATACTAATGAAC
1 ATATA-TATATA-GTTATATATACT-ATGAACTATATAATGTATAGTTTATATATACTAATCAAC
171176 T
63 T
*
171177 ATATATATATAGTTTATATATACTAGTGAACTATATATAATGCATAGTTTATATATACCATATAG
1 ATATATATATAG-TTATATATACTA-TGAAC--TATATAATGTATAGTTTATATATA-C-TA-A-
*
171242 TCTA-T
58 TCAACT
*
171247 ATATATCATATAGTT-TATATACTGATAAACTATATAATGTATAGTTTA
1 ATATAT-ATATAGTTATATATACT-ATGAACTATATAATGTATAGTTTA
171295 GGGTTTAGGG
Statistics
Matches: 102, Mismatches: 6, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
64 2 0.02
65 22 0.22
66 5 0.05
67 39 0.38
68 1 0.01
69 14 0.14
70 11 0.11
71 8 0.08
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (63 bp):
ATATATATATAGTTATATATACTATGAACTATATAATGTATAGTTTATATATACTAATCAACT
Found at i:171353 original size:31 final size:33
Alignment explanation
Indices: 171316--171379 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 33
171306 TTAGGATTTT
*
171316 TATATAGTTCATATGTA-AAT-TATACTATATA
1 TATATAGTTCATATATATAATATATACTATATA
* *
171347 TATATAGTTTATATATATAATATATAGTATATA
1 TATATAGTTCATATATATAATATATACTATATA
171380 ACTATAAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 15 0.54
32 3 0.11
33 10 0.36
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (33 bp):
TATATAGTTCATATATATAATATATACTATATA
Found at i:171386 original size:20 final size:21
Alignment explanation
Indices: 171336--171412 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 21
171326 ATATGTAAAT
*
171336 TATACTATATATATATAGTTTA
1 TATACTATA-ATATATAGTATA
171358 TATA-TATAATATATAGTATA
1 TATACTATAATATATAGTATA
*
171378 TA-ACTATAA-ACTATAGTATG
1 TATACTATAATA-TATAGTATA
171398 TAGTA-TATAA-ATATA
1 TA-TACTATAATATATA
171413 AACTATAGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
19 2 0.04
20 32 0.65
21 10 0.20
22 5 0.10
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (21 bp):
TATACTATAATATATAGTATA
Found at i:171420 original size:27 final size:27
Alignment explanation
Indices: 171362--171454 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
171352 AGTTTATATA
* *
171362 TATAATATATAGTATATAACTATAAAC
1 TATAGTATATAGTATATAAATATAAAC
*
171389 TATAGTATGTAGTATATAAATATAAAC
1 TATAGTATATAGTATATAAATATAAAC
* * *
171416 TATAGTTTTTA-TATATAGTATATAAA-
1 TATAGTATATAGTATATA-AATATAAAC
171442 TAGT-GTATATAGT
1 TA-TAGTATATAGT
171455 TCACTAATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
26 13 0.24
27 42 0.76
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (27 bp):
TATAGTATATAGTATATAAATATAAAC
Found at i:171489 original size:24 final size:24
Alignment explanation
Indices: 171447--171496 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
171437 ATAAATAGTG
171447 TATATAGTTCACTAATAAACTATA
1 TATATAGTTCACTAATAAACTATA
*
171471 TATATAGTTCA-TATGTAAACTATA
1 TATATAGTTCACTA-ATAAACTATA
171495 TA
1 TA
171497 GTTTATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (24 bp):
TATATAGTTCACTAATAAACTATA
Found at i:171507 original size:31 final size:31
Alignment explanation
Indices: 171467--171535 Score: 111
Period size: 33 Copynumber: 2.2 Consensus size: 31
171457 ACTAATAAAC
171467 TATATATATAGTTCATATGTAAACTATATAGTT
1 TATATATATAGTTCATATGTAAA-T-TATAGTT
171500 TATATATATAGTTCATATGTAAATTATAGTT
1 TATATATATAGTTCATATGTAAATTATAGTT
*
171531 CATAT
1 TATAT
171536 GTAAATATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 11 0.31
32 1 0.03
33 23 0.66
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (31 bp):
TATATATATAGTTCATATGTAAATTATAGTT
Found at i:171529 original size:18 final size:18
Alignment explanation
Indices: 171473--171583 Score: 79
Period size: 18 Copynumber: 6.0 Consensus size: 18
171463 AAACTATATA
171473 TATAGTTCATATGTAAACT
1 TATAGTTCATATGTAAA-T
*
171492 ATATAGTT--TA--TATA-
1 -TATAGTTCATATGTAAAT
171506 TATAGTTCATATGTAAAT
1 TATAGTTCATATGTAAAT
171524 TATAGTTCATATGTAAATAT
1 TATAGTTCATATGT-AA-AT
* *
171544 CAACTATAGTTTATATGTAAAC
1 ----TATAGTTCATATGTAAAT
*
171566 TATAGTTCATATATAAAT
1 TATAGTTCATATGTAAAT
171584 ATCAACCTTA
Statistics
Matches: 73, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
13 7 0.10
15 2 0.03
16 3 0.04
17 3 0.04
18 31 0.42
19 2 0.03
20 9 0.12
22 1 0.01
23 2 0.03
24 13 0.18
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (18 bp):
TATAGTTCATATGTAAAT
Found at i:171570 original size:42 final size:42
Alignment explanation
Indices: 171506--171589 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
171496 AGTTTATATA
* *
171506 TATAGTTCATATGTAAATTATAGTTCATATGTAAATATCAAC
1 TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAAC
*
171548 TATAGTTTATATGTAAACTATAGTTCATATATAAATATCAAC
1 TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAAC
171590 CTTAGTGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (42 bp):
TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAAC
Found at i:171601 original size:42 final size:42
Alignment explanation
Indices: 171506--171601 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
171496 AGTTTATATA
* *
171506 TATAGT-TCATATGTAAATTATAGTTCATATGTAAATATCAAC
1 TATAGTGT-ATATGTAAACTATAGTTCATATATAAATATCAAC
*
171548 TATAGTTTATATGTAAACTATAGTTCATATATAAATATCAACC
1 TATAGTGTATATGTAAACTATAGTTCATATATAAATATCAA-C
171591 T-TAGTGTATAT
1 TATAGTGTATAT
171602 ATATATTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
42 46 0.94
43 3 0.06
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (42 bp):
TATAGTGTATATGTAAACTATAGTTCATATATAAATATCAAC
Found at i:171636 original size:18 final size:18
Alignment explanation
Indices: 171615--171743 Score: 66
Period size: 18 Copynumber: 7.7 Consensus size: 18
171605 TATTTATATA
*
171615 TATAGTTCATATGTAAAC
1 TATAGTTCATATATAAAC
171633 TATAGTTCATATATAAA-
1 TATAGTTCATATATAAAC
** * *
171650 TATCA-ACCTTAGTATATA-
1 TAT-AGTTCATA-TATAAAC
171668 TATA-TT--TATAT--A-
1 TATAGTTCATATATAAAC
*
171680 TATAGTTCATATGTAAAC
1 TATAGTTCATATATAAAC
* *
171698 TATAGTTCATATATATAG
1 TATAGTTCATATATAAAC
*
171716 TATA--T-AAATATAAAC
1 TATAGTTCATATATAAAC
*
171731 TATAGTTTATATA
1 TATAGTTCATATA
171744 AATAGTATAA
Statistics
Matches: 85, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
12 5 0.06
13 2 0.02
14 3 0.04
15 17 0.20
16 1 0.01
17 9 0.11
18 48 0.56
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.43
Consensus pattern (18 bp):
TATAGTTCATATATAAAC
Found at i:171714 original size:67 final size:66
Alignment explanation
Indices: 171548--171712 Score: 305
Period size: 65 Copynumber: 2.5 Consensus size: 66
171538 AAATATCAAC
*
171548 TATAGTTTATATGTAAACTATAGTTCATATATAAATATCAACCTTAGTGTATATATATATTTATA
1 TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAACCTTAG-GTATATATATATTTATA
171613 TA
65 TA
171615 TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAACCTTA-GTATATATATATTTATAT
1 TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAACCTTAGGTATATATATATTTATAT
171679 A
66 A
171680 TATAGTTCATATGTAAACTATAGTTCATATATA
1 TATAGTTCATATGTAAACTATAGTTCATATATA
171713 TAGTATATAA
Statistics
Matches: 97, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
65 52 0.54
67 45 0.46
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (66 bp):
TATAGTTCATATGTAAACTATAGTTCATATATAAATATCAACCTTAGGTATATATATATTTATAT
A
Found at i:171734 original size:20 final size:20
Alignment explanation
Indices: 171710--171783 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
171700 TAGTTCATAT
171710 ATATAGTATATAAATATAAA
1 ATATAGTATATAAATATAAA
*
171730 CTATAGTTTATATAAATAGTATAAA
1 ATATAG--TATAT-AA-A-TATAAA
* *
171755 ATATAATATATAAGTATAAA
1 ATATAGTATATAAATATAAA
*
171775 TTATAGTAT
1 ATATAGTAT
171784 GTAGTTTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
20 18 0.42
22 7 0.16
23 7 0.16
24 1 0.02
25 10 0.23
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (20 bp):
ATATAGTATATAAATATAAA
Found at i:171750 original size:33 final size:32
Alignment explanation
Indices: 171693--171760 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
171683 AGTTCATATG
*
171693 TAAACTATAGTTCATATATATAGTATATAAATA
1 TAAACTATAGTTCATATAAATAGTATA-AAATA
*
171726 TAAACTATAGTTTATATAAATAGTATAAAATA
1 TAAACTATAGTTCATATAAATAGTATAAAATA
171758 TAA
1 TAA
171761 TATATAAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 8 0.24
33 25 0.76
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (32 bp):
TAAACTATAGTTCATATAAATAGTATAAAATA
Found at i:171839 original size:2 final size:2
Alignment explanation
Indices: 171826--171944 Score: 51
Period size: 2 Copynumber: 62.5 Consensus size: 2
171816 ACCCTAAATC
* * *
171826 AT AT AT ACT AT AT AT AT AT AA ACT AT AT A- AT TT AT AC A- AT AT
1 AT AT AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
* * *
171868 AT AT -T AT AT AT A- AT -T AT AC AT A- AT AT AT AA AT AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
171906 -T GT AT AGT TT AT AT AT A- AT -T CAT AT AT A- AT TT AT AT AT A
1 AT AT AT A-T AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT A
171945 AACTATGTAG
Statistics
Matches: 87, Mismatches: 16, Indels: 28
0.66 0.12 0.21
Matches are distributed among these distances:
1 10 0.11
2 72 0.83
3 5 0.06
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:171861 original size:20 final size:20
Alignment explanation
Indices: 171838--172126 Score: 84
Period size: 20 Copynumber: 14.3 Consensus size: 20
171828 ATATACTATA
171838 TATATATAAACTATATAA-T
1 TATATATAAACTATATAATT
*
171857 T-TATA-CAA-TATAT-A-T
1 TATATATAAACTATATAATT
*
171872 TATATATAATTA-TACATAATAT
1 TATATATAA--ACTATATAAT-T
* * * *
171894 ATAAATATAAATTGTATAGTT
1 -TATATATAAACTATATAATT
*
171915 TATATATAATTCATATATAATT
1 TATATATAA-AC-TATATAATT
* *
171937 TATATATAAACTATGTAGTT
1 TATATATAAACTATATAATT
* ** *
171957 TCTATAT-AGTTCA-ATAGTT
1 TATATATAAACT-ATATAATT
* *
171976 CATATATAAACTATATAGTAT
1 TATATATAAACTATATAAT-T
* * *
171997 TATAGTTTAAAC-ATGGT-ATA
1 TATA-TATAAACTAT-ATAATT
* * * *
172017 TATAGTTTATACTTTATACATAA
1 TATA-TATAAACTATATA-AT-T
* *
172040 TATGTATAAACTATATAGTT
1 TATATATAAACTATATAATT
*
172060 TATATATATAA-TACATATACTT
1 TATATATA-AACT--ATATAATT
*
172082 TATATATAAACTATATAGTT
1 TATATATAAACTATATAATT
* *
172102 TATATATATA-TATAT-ATA
1 TATATATAAACTATATAATT
172120 TATATAT
1 TATATAT
172127 CTATATTAGT
Statistics
Matches: 202, Mismatches: 43, Indels: 51
0.68 0.15 0.17
Matches are distributed among these distances:
15 3 0.01
16 9 0.04
17 3 0.01
18 12 0.06
19 24 0.12
20 66 0.33
21 16 0.08
22 57 0.28
23 12 0.06
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (20 bp):
TATATATAAACTATATAATT
Found at i:171943 original size:13 final size:11
Alignment explanation
Indices: 171849--171945 Score: 65
Period size: 11 Copynumber: 8.6 Consensus size: 11
171839 ATATATAAAC
171849 TATATAATTTA
1 TATATAATTTA
*
171860 TACAATATATATTA
1 TA-TATA-AT-TTA
171874 TATATAA-TTA
1 TATATAATTTA
*
171884 TACATAATATATA
1 TATATAAT-T-TA
* *
171897 AATATAA-AT-
1 TATATAATTTA
* *
171906 TGTATAGTTTA
1 TATATAATTTA
*
171917 TATATAATTCA
1 TATATAATTTA
171928 TATATAATTTA
1 TATATAATTTA
171939 TATATAA
1 TATATAA
171946 ACTATGTAGT
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
9 4 0.06
10 11 0.17
11 27 0.42
12 5 0.08
13 12 0.19
14 5 0.08
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (11 bp):
TATATAATTTA
Found at i:172007 original size:22 final size:21
Alignment explanation
Indices: 171982--172105 Score: 69
Period size: 22 Copynumber: 5.9 Consensus size: 21
171972 AGTTCATATA
171982 TAAACTATATAGTATTATAGTT
1 TAAACTATATAGT-TTATAGTT
* *
172004 TAAAC-ATGGTA-TATATAGTT
1 TAAACTAT-ATAGTTTATAGTT
* * ** * *
172024 TATACTTTATACATAATATGTA
1 TAAACTATATAGTTTATA-GTT
172046 TAAACTATATAGTTTATA-TAT
1 TAAACTATATAGTTTATAGT-T
* *
172067 ATAATAC-ATATACTTTATA-TA
1 -TAA-ACTATATAGTTTATAGTT
172088 TAAACTATATAGTTTATA
1 TAAACTATATAGTTTATA
172106 TATATATATA
Statistics
Matches: 76, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
19 2 0.03
20 28 0.37
21 7 0.09
22 37 0.49
23 2 0.03
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (21 bp):
TAAACTATATAGTTTATAGTT
Found at i:172047 original size:27 final size:28
Alignment explanation
Indices: 171987--172047 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
171977 ATATATAAAC
* **
171987 TATATAGTATTATAGTTTAAACATGGTA
1 TATATAGTATTATACTTTAAACATAATA
*
172015 TATATAGT-TTATACTTTATACATAATA
1 TATATAGTATTATACTTTAAACATAATA
*
172042 TGTATA
1 TATATA
172048 AACTATATAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (28 bp):
TATATAGTATTATACTTTAAACATAATA
Found at i:172065 original size:2 final size:2
Alignment explanation
Indices: 172060--172132 Score: 67
Period size: 2 Copynumber: 35.5 Consensus size: 2
172050 CTATATAGTT
* * * *
172060 TA TA TA TA TA -A TA CA TA TA CTT TA TA TA TA AA CTA TA TA GTT
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA -TA
*
172102 TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
172133 TAGTTGTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
1 1 0.02
2 53 0.93
3 3 0.05
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.48
Consensus pattern (2 bp):
TA
Found at i:172107 original size:22 final size:22
Alignment explanation
Indices: 172039--172119 Score: 98
Period size: 22 Copynumber: 3.8 Consensus size: 22
172029 TTTATACATA
*
172039 ATATGTATAAACTATATAGTTT
1 ATATATATAAACTATATAGTTT
*
172061 ATATATATAATAC-ATATA-CTT
1 ATATATATAA-ACTATATAGTTT
172082 -TATATATAAACTATATAGTTT
1 ATATATATAAACTATATAGTTT
*
172103 ATATATATATA-TATATA
1 ATATATATAAACTATATA
172120 TATATATCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.04
20 14 0.27
21 10 0.20
22 23 0.45
23 2 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (22 bp):
ATATATATAAACTATATAGTTT
Found at i:178488 original size:225 final size:218
Alignment explanation
Indices: 178170--178667 Score: 705
Period size: 225 Copynumber: 2.2 Consensus size: 218
178160 GTGATATTCT
*
178170 GTTCGGGTTTAGGGTGAAAAAAATCAGACCGACCCGAAAATATATATAATTCAGGTCGGGTCGGA
1 GTTCGGGTTTAGGGTGAAAAAAATCGGACCGACCCGAAAATATATATAATTCAGGTCGGGTCGGA
*
178235 TTAAGTCACTGTTTTTATTAAATAAAAATAAATTTTTATTATTTCGGGTAGAGTCGGGTTGGATT
66 TTAAGTCACTGTTTTTATTAAATAAAAATAAATTTTTATTATTTC--G--G-GTCGGGTCGGATT
*
178300 TCTAATTCATATATTTGGGTCGGGTCGGGTCGGATGAAACTTTAATTTG-T-TCGGGTC-AGGTT
126 TCTAATTCATATA--T---TCAGGTCGGGTCGGATGAAACTTTAATTTGTTGTCGGGTCGAGGTT
** *
178362 TTTAAGTGTGATATTCGGGTCGGGTTGGGTCGG
186 TTTAAGTGTGATATTCGGGTCAAGTTGGGCCGG
* *
178395 GTTCAGGTTTAGGGTGAAAAAAATCGGACCGACCCGAAAATATATATAATTCGGGTCGGGTCGGA
1 GTTCGGGTTTAGGGTGAAAAAAATCGGACCGACCCGAAAATATATATAATTCAGGTCGGGTCGGA
*
178460 TTAAGTCACTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGTCGGATTTCTAA
66 TTAAGTCACTGTTTTTATTAAATAAAAATAAATTTTTATTATTTCGGGTCGGGTCGGATTTCTAA
* *
178525 TTCATATATTCAGGTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGTCGAGTTTTTTAAGT
131 TTCATATATTCAGGTCGGGTCGGATGAAACTTTAATTTGTT---GTCGGGTCGAGGTTTTTAAGT
178590 GTGATATTCGGGTCAAGTTGGGCCGG
193 GTGATATTCGGGTCAAGTTGGGCCGG
* ** * *
178616 GTTCGGGTTTAGGGTGAAAAAAACCGGAATGACTCGAAAAAAATATATAATT
1 GTTCGGGTTTAGGGTGAAAAAAATCGGACCGACCCG-AAAATATATATAATT
178668 TTACCTTATA
Statistics
Matches: 249, Mismatches: 17, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
215 28 0.11
216 1 0.00
218 1 0.00
220 32 0.13
221 66 0.27
222 14 0.06
223 1 0.00
225 106 0.43
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (218 bp):
GTTCGGGTTTAGGGTGAAAAAAATCGGACCGACCCGAAAATATATATAATTCAGGTCGGGTCGGA
TTAAGTCACTGTTTTTATTAAATAAAAATAAATTTTTATTATTTCGGGTCGGGTCGGATTTCTAA
TTCATATATTCAGGTCGGGTCGGATGAAACTTTAATTTGTTGTCGGGTCGAGGTTTTTAAGTGTG
ATATTCGGGTCAAGTTGGGCCGG
Found at i:185280 original size:23 final size:23
Alignment explanation
Indices: 185244--185289 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
185234 GAGTTTTATG
* *
185244 TTAAATAATGAATTCATTAAATT
1 TTAAATAATAAATTCATAAAATT
* *
185267 TTAAATTATAAATTTATAAAATT
1 TTAAATAATAAATTCATAAAATT
185290 CTAGAGACAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
TTAAATAATAAATTCATAAAATT
Found at i:189484 original size:20 final size:20
Alignment explanation
Indices: 189459--189503 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
189449 ATATATATAT
189459 ATATATATATATGGATGGATGG
1 ATATAT-TA-ATGGATGGATGG
*
189481 ATATATTAATGGGTGGATGG
1 ATATATTAATGGATGGATGG
189501 ATA
1 ATA
189504 CTGCGGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 2 0.09
22 6 0.27
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (20 bp):
ATATATTAATGGATGGATGG
Found at i:189486 original size:2 final size:2
Alignment explanation
Indices: 189423--189470 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
189413 CAAGGGATGA
189423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
189465 AT AT AT
1 AT AT AT
189471 GGATGGATGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:189874 original size:27 final size:28
Alignment explanation
Indices: 189844--189900 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
189834 AGAGAACAGA
* *
189844 AGTT-AATTTTTTGATTCTGCAGTATCG
1 AGTTAAATTTTTTGATTCTACAATATCG
189871 AGTTAAATTTTTTGATTCTACAATATCG
1 AGTTAAATTTTTTGATTCTACAATATCG
189899 AG
1 AG
189901 GATTGGATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.46
Consensus pattern (28 bp):
AGTTAAATTTTTTGATTCTACAATATCG
Found at i:190339 original size:18 final size:18
Alignment explanation
Indices: 190296--190349 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
190286 GTGGTGTACA
190296 GTGGTTGTCTGTTAT--TG
1 GTGGTTGT-TGTTATGCTG
190313 GAT-GTTGTTGTTATGCTG
1 G-TGGTTGTTGTTATGCTG
190331 GTGGTTGTTTGTT-TGCTG
1 GTGGTTG-TTGTTATGCTG
190349 G
1 G
190350 AGATCTCTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
16 6 0.19
17 7 0.22
18 14 0.44
19 5 0.16
ACGTcount: A:0.06, C:0.06, G:0.37, T:0.52
Consensus pattern (18 bp):
GTGGTTGTTGTTATGCTG
Found at i:194868 original size:196 final size:198
Alignment explanation
Indices: 194279--194905 Score: 675
Period size: 197 Copynumber: 3.1 Consensus size: 198
194269 TATATAATGT
* * * * *
194279 ATCGACACAATTTTAAATGTATTGACACT-TTATGCTTGCATCTCGTTGGGCATTCCTAATTCAT
1 ATCGATACAATTTTAAATGTATCGACA-TGTTATGCGTGAACCTCGTTGGGCATT-C--ATT-A-
* * *
194343 TCTGGAAAAAAGTATCGACACAAAC-TATAAAGGTGTCGATACATTATTTAGACCTATTTTCTCA
60 --TGGAAAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATTT-GACCTATTTTCTCA
* * *
194407 TAAAACCGGTATATTTATACCGG-TACATTGTAAATTTACCTATAACATTGTAATT-TTCGTTTC
122 TAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTCGTTTT
194470 GATGTTTTTGGG
187 GATGTTTTTGGG
* * * *
194482 ATCGATATAATTTTAAATGTATCGACATGTTATTCTTGCACCTCGTTGGGCATTCATTATGGACA
1 ATCGATACAATTTTAAATGTATCGACATGTTATGCGTGAACCTCGTTGGGCATTCATTATGGA-A
* *
194547 AAATGTATCGACACAAA-TTACACAAGTGTCGATACTTTATTCTGACCTATTTTCTCATAAAACC
65 AAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATT-TGACCTATTTTCTCATAAAACC
* * * *
194611 AGTAAATTTAAACCGGTTACATTGTAAATTGACCTATTACATTATAATTA-TCGGTTTTGATGTT
129 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTC-GTTTTGATGTT
*
194675 TTTGTG
193 TTTGGG
* * *
194681 ATCGATACAATTTTAAATGTATCGACACT-TTATGCGTGAACCT-GTTTGTGCTTTC-TTTTGGA
1 ATCGATACAATTTTAAATGTATCGACA-TGTTATGCGTGAACCTCG-TTGGGCATTCATTATGGA
* * * * *
194743 AAAAAGTATCGACGCAAACTTA-AAAAGTGTCGATACTTTATGTTGACCTGTTTTATAAT-TAAC
64 AAAAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTAT-TTGACCTATTTTCTCATAAAAC
* * * ** *
194806 CGGTATATGTATACTGGTTACATTGTTAATTTAAATATTACATTATAATTATTTGTTTTGATGTT
128 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTCGTTTTGATGTT
194871 TTTGGG
193 TTTGGG
* *
194877 GTCGATAC-TTTTTGAAAATGTATCGACAT
1 ATCGATACAATTTT--AAATGTATCGACAT
194906 ATATTCTTAC
Statistics
Matches: 365, Mismatches: 45, Indels: 35
0.82 0.10 0.08
Matches are distributed among these distances:
195 4 0.01
196 73 0.20
197 131 0.36
198 43 0.12
199 61 0.17
200 4 0.01
202 2 0.01
203 47 0.13
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (198 bp):
ATCGATACAATTTTAAATGTATCGACATGTTATGCGTGAACCTCGTTGGGCATTCATTATGGAAA
AAAGTATCGACACAAACTTACAAAAGTGTCGATACTTTATTTGACCTATTTTCTCATAAAACCGG
TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATTCGTTTTGATGTTTTT
GGG
Found at i:196691 original size:199 final size:199
Alignment explanation
Indices: 196269--197124 Score: 1161
Period size: 199 Copynumber: 4.3 Consensus size: 199
196259 AGACATTTGG
* * *
196269 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTATTATAAATGTATCGAAACTTTGTT-
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT-TTA
* * * * *
196333 GTGCACTTGGTTTTAAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGAT
65 GTGCACTTGGTTTTGAAATACAGTATGGACAAAAA-GTATCGAAACTTGTTATATTTGTGTCGAT
** * * * * * * *
196398 ACTTCATGTATACCTGTATTCTCATAAA-CTGATACATTTAGGCCGGTTACATTGTTAATTTACC
129 ACTTTTTGTACACCTGTTTTCTCAAAAATC-GGTATATTTAGACCGGTTACATTGATAATTTACC
196462 TATTACA
193 TATTACA
196469 TTATAATTATAGTTTTT-GATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
1 TTATAATTAT-GTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
* * * *
196533 GTGCACTTGGTTTTGAAATACATTATGTAGAAAAAGTATCGACACTTGTTATATTTGTGTCGATA
65 GTGCACTTGGTTTTGAAATACAGTATGGACAAAAAGTATCGAAACTTGTTATATTTGTGTCGATA
* * *
196598 CTTTTTGTACACATGTTTTCTCAAAAATCGGTATATTTATACCGTTTACA-TGAATAATTTACCT
130 CTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTACATTG-ATAATTTACCT
196662 ATTACA
194 ATTACA
* *
196668 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACAC-TTTTAT
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA-
* * * * *
196732 GTGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATTGAAACTTGTTCTATTTGTGTCGATA
65 GTGCACTTGGTTTTGAAATACAGTATGGACAAAAAGTATCGAAACTTGTTATATTTGTGTCGATA
* * *
196797 CTGTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTATATTGCTAATTTACCTA
130 CTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTACATTGATAATTTACCTA
*
196862 TTTCA
195 TTACA
* *
196867 TTATAATTATGGTTTTT-GATATTTTTGGGATCGACACTTGTTATATATGTATCGACAC-TTTTA
1 TTATAATTAT-GTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
* * * *
196930 GTGCACTTGGTTTTGAAATACAGTCTGGAGAAAAAGTATCGACACTTGTTAGATTTGTGTCGATA
65 GTGCACTTGGTTTTGAAATACAGTATGGACAAAAAGTATCGAAACTTGTTATATTTGTGTCGATA
* **
196995 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCTTTTACA-TGAATAATTTACCT
130 CTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTACATTG-ATAATTTACCT
197059 ATTACA
194 ATTACA
* * *
197065 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGTCACTT
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
197125 ATTTTATTTG
Statistics
Matches: 580, Mismatches: 65, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
197 8 0.01
198 175 0.30
199 302 0.52
200 89 0.15
201 6 0.01
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (199 bp):
TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAG
TGCACTTGGTTTTGAAATACAGTATGGACAAAAAGTATCGAAACTTGTTATATTTGTGTCGATAC
TTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTACATTGATAATTTACCTAT
TACA
Found at i:197045 original size:397 final size:399
Alignment explanation
Indices: 196269--197124 Score: 1326
Period size: 397 Copynumber: 2.2 Consensus size: 399
196259 AGACATTTGG
* * * * *
196269 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTATTATAAATGTATCGAAACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTGTTG
* * * *
196334 TGCACTTGGTTTTAAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGATA
66 TGCACTTGGTTCTAAAATACAGTATGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
* * * *
196399 CTTCATGTATACCTGTATTCTCATAAACTGATACATTTAGGCCGGTTACATTGTTAATTTACCTA
131 CTTCATGTACACCTGTATTCTCAAAAACTGATACATTTAGACCGGTTACATTGCTAATTTACCTA
*
196464 TTACATTATAATTATAGTTTTTGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
196 TTACATTATAATTATAGTTTTTGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
* * *
196529 TTTAGTGCACTTGGTTTTGAAATACATTATGTAGAAAAAGTATCGACACTTGTTATATTTGTGTC
261 TTTAGTGCACTTGGTTTTGAAATACAGTATGGAGAAAAAGTATCGACACTTGTTAGATTTGTGTC
* *
196594 GATACTTTTTGTACACATGTTTTCTCAAAAATCGGTATATTTATACCGTTTACATGAATAATTTA
326 GATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTA
196659 CCTATTACA
391 CCTATTACA
196668 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTT-TAT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTGT-T
* * * * *
196732 GTGCACTTGGTTCTGAAATACATTATGGACCAAAA-GTATTGAAACTTGTTCTATTTGTGTCGAT
65 GTGCACTTGGTTCTAAAATACAGTATGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGAT
* * * * *
196796 ACTGT-TTGTACACCTGTTTTCTCAAAAA-TCGGTATATTTAGACCGGTTATATTGCTAATTTAC
130 ACT-TCATGTACACCTGTATTCTCAAAAACT-GATACATTTAGACCGGTTACATTGCTAATTTAC
* * *
196859 CTATTTCATTATAATTATGGTTTTTGATATTTTTGGGATCGACACTTGTTATATATGTATCGACA
193 CTATTACATTATAATTATAGTTTTTGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACA
*
196924 C-TTTTAGTGCACTTGGTTTTGAAATACAGTCTGGAGAAAAAGTATCGACACTTGTTAGATTTGT
258 CTTTTTAGTGCACTTGGTTTTGAAATACAGTATGGAGAAAAAGTATCGACACTTGTTAGATTTGT
* *
196988 GTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCTTTTACATGAATAAT
323 GTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAAT
197053 TTACCTATTACA
388 TTACCTATTACA
*
197065 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGTCACTT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTT
197125 ATTTTATTTG
Statistics
Matches: 418, Mismatches: 36, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
397 192 0.46
398 139 0.33
399 87 0.21
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (399 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTGTTG
TGCACTTGGTTCTAAAATACAGTATGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
CTTCATGTACACCTGTATTCTCAAAAACTGATACATTTAGACCGGTTACATTGCTAATTTACCTA
TTACATTATAATTATAGTTTTTGATATTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
TTTAGTGCACTTGGTTTTGAAATACAGTATGGAGAAAAAGTATCGACACTTGTTAGATTTGTGTC
GATACTTTTTGTACACATGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTA
CCTATTACA
Found at i:199721 original size:15 final size:15
Alignment explanation
Indices: 199697--199738 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
199687 AGGAGGTTGT
199697 GGTTGAGAAGAGCTG
1 GGTTGAGAAGAGCTG
* *
199712 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGCTG
199727 GGTTGAGAAGAG
1 GGTTGAGAAGAG
199739 ATTTGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.02, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTTGAGAAGAGCTG
Found at i:200457 original size:182 final size:182
Alignment explanation
Indices: 200150--200629 Score: 793
Period size: 182 Copynumber: 2.6 Consensus size: 182
200140 TAATTCTGGA
* * * * *
200150 TCAACATATCCGATATCTATTTACCGGTTTTTTCA-TTTTGAGACTGGTTTTATCATATTTTTAC
1 TCAACATATCCGGTAACT-TTTTCCGGTTTTGTCATTTTTGAGACTAGTTTTATCATATTTTTAC
*
200214 CTGTTATATTATTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAAGCGCTATAACTT
65 CTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAAGCGCTATAACTT
* *
200279 CTTCTCTTTTAAATTCATAAAGTGTCGATACTTATATTAAATTATCGACACTT
130 CTTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTT
200332 TCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGAC-ATGTTTTATCATATTTTTAC
1 TCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACTA-GTTTTATCATATTTTTAC
* * * *
200396 ATGTTATATTGGTAAGGATCGATACATTTTAATAAAGTGTCGACACTTTTTAAGCGCTATAACTT
65 CTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAAGCGCTATAACTT
200461 CTTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTT
130 CTTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTT
* * *
200514 TCAATATATCCGGTAACTTTTTCTGGTTTTGTCATTTTTGAGACTAGTTTTATCATATTTTTTCC
1 TCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACTAGTTTTATCATATTTTTACC
200579 TGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTA
66 TGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTA
200630 GTTTAATTTC
Statistics
Matches: 276, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
181 14 0.05
182 261 0.95
183 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (182 bp):
TCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACTAGTTTTATCATATTTTTACC
TGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTTTTTAAGCGCTATAACTTC
TTCTCTTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTT
Found at i:200779 original size:163 final size:166
Alignment explanation
Indices: 200468--201332 Score: 789
Period size: 182 Copynumber: 5.0 Consensus size: 166
200458 CTTCTTCTCT
* *
200468 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATATATCCGGTAAC-T
1 TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACGT
* * * *
200532 TTTTCTGGTTTTGTCATTTTTGAGACTAGTTTTATCATATTTTTTCCTGTTATATTGTTATGGAT
66 TTTACTGGTTTTGTCAATTTTGAGACTTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
200597 CGATACATTTTCATAAAGTGTCGACACTTTTTA-G-
131 CGATACATTTTCATAAAGTGTCGACACTTTTTAGGC
* *
200631 TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTATCGT
1 TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACGT
* * *
200696 TTTACTGGTTTTGTCAATTTTGGGACTTGTTTTATCATATTTTTACCTGTTATATTATTGTGGAT
66 TTTACTGGTTTTGTCAATTTTGAGACTTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* * *
200761 CGATATATTTT-TTAAAGTGTCAACACTTTTTAGGCGCTATAACTTCATCTC
131 CGATACATTTTCATAAAGTGTCGACACTTTTTA-G-G--------------C
* * *
200812 TTTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCGACACTTTCAATATATCCGGTAGCG
1 -TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACG
*
200877 TTTTACTGGTTTTGTCAATTTTGAGACATGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
65 TTTTACTGGTTTTGTCAATTTTGAGACTTGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
200942 TCGATACATTTTCATAAAGTGTCGACACTTTTTAAGCGCAATAACTTTTTCTC
130 TCGATACATTTTCATAAAGTGTCGACACTTTTT-AG-G--------------C
* * * * *
200995 TTTTAAATTCAGAAAGTGTCGATAATTATATTAAA-T-TCGACACTTTTAACATATCCGATAAC-
1 -TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACG
* * * * *
201057 TTTTTCCGGTTTTGTCATTTTTGAGA-TATGTTTTATCATATTTTTACCTGTTATATTGGTAAGG
65 TTTTACTGGTTTTGTCAATTTTGAGACT-TGTTTTATCATATTTTTACCTGTTATATTGTTATGG
*
201121 ATCGATACATTTTCATAAAGTGTCGACACTTTATAGGCGCTATAACTTCTTCTC
129 ATCGATACATTTTCATAAAGTGTCGACACTTTTTA-G-G--------------C
* * * *
201175 TTTTAAATTCAAAAAGTATCGATACTAATATTAAATTATCGACACTTTCAATATATCCGGTAAC-
1 -TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACG
* ** * ** *
201239 TTTTTCCAGTTTTGTCATTTTTGAGACCAGTTTTATCAT-TTTTTACCTGTTATATTGTTGTGGA
65 TTTTACTGGTTTTGTCAATTTTGAGACTTGTTTTATCATATTTTTACCTGTTATATTGTTATGGA
* ** *
201303 TCGATA-TTTTTTTTAAAGTATCGACACTTT
130 TCGATACATTTTCATAAAGTGTCGACACTTT
201333 ATAGTTACTA
Statistics
Matches: 615, Mismatches: 60, Indels: 37
0.86 0.08 0.05
Matches are distributed among these distances:
163 78 0.13
164 69 0.11
166 1 0.00
179 1 0.00
180 157 0.26
181 51 0.08
182 191 0.31
183 66 0.11
184 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (166 bp):
TTTAATTTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAACGT
TTTACTGGTTTTGTCAATTTTGAGACTTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
CGATACATTTTCATAAAGTGTCGACACTTTTTAGGC
Done.