Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000081.1 Hibiscus syriacus cultivar Beakdansim tig00000145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136242

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2871--2902
2
16.5
2
93
6
57
0
50
0
50
1.00
5560--5689
47
2.9
43
69
18
111
42
6
6
45
1.54
12913--12948
2
18.0
2
100
0
72
50
0
50
0
1.00
18394--18459
22
3.0
22
80
8
80
54
21
10
13
1.69
24969--25142
76
2.3
77
85
4
228
41
7
14
36
1.74
25443--25680
68
3.4
69
81
6
266
31
13
13
42
1.81
27157--27239
29
2.9
28
83
3
103
42
21
21
14
1.89
38147--38258
10
11.7
9
75
12
89
16
25
28
29
1.96
38146--38259
19
5.9
19
80
11
106
16
26
28
28
1.97
38167--38264
9
10.3
9
74
11
54
15
28
29
26
1.96
38259--38323
5
12.2
5
81
12
76
18
53
21
6
1.66
38261--38330
22
3.2
22
100
0
140
18
50
22
8
1.74
39213--39336
63
2.0
63
82
6
153
16
28
29
25
1.97
45517--45591
29
2.5
30
89
8
118
17
26
26
29
1.97
45518--45629
10
11.7
9
75
12
80
15
24
29
31
1.95
45517--45630
19
5.9
19
78
11
97
15
24
28
30
1.96
45630--45691
22
3.0
22
82
15
80
17
48
22
11
1.79
45632--45678
17
2.8
17
100
0
94
19
48
23
8
1.75
46561--46684
63
2.0
63
82
6
153
16
28
29
25
1.97
48077--48109
17
2.0
17
88
5
50
9
12
21
57
1.62
49116--49151
15
2.4
15
95
0
63
47
25
16
11
1.79
53694--53749
17
3.4
17
68
9
53
25
19
8
46
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53686--53749
32
2.0
32
87
3
94
23
21
9
45
1.81
54243--54295
24
2.2
24
100
0
106
49
16
26
7
1.73
57784--57956
36
4.8
36
87
4
197
30
14
8
47
1.73
57788--57956
73
2.3
72
81
5
189
30
14
8
46
1.74
59843--59880
19
2.1
19
85
9
53
34
2
2
60
1.24
63293--63400
48
2.2
49
83
8
139
25
27
28
18
1.98
63304--63399
48
2.0
49
87
4
140
25
29
27
18
1.98
76009--76045
14
2.6
14
95
0
65
48
29
16
5
1.68
76440--76585
65
2.3
64
86
11
201
30
18
21
30
1.97
76441--76632
65
3.0
63
80
12
178
28
18
22
30
1.97
84100--84132
14
2.3
15
94
5
59
27
30
12
30
1.92
87410--87437
2
14.0
2
100
0
56
50
0
0
50
1.00
88429--88476
4
11.8
4
91
4
51
33
0
0
66
0.92
89069--89114
24
2.0
23
83
12
58
43
6
13
36
1.69
92809--92835
2
13.5
2
100
0
54
51
0
0
48
1.00
93073--93120
21
2.3
21
78
7
53
39
2
10
47
1.49
96905--96930
4
6.5
4
100
0
52
26
23
0
50
1.50
96749--97304
182
3.0
182
95
4
950
34
14
15
36
1.87
98694--98734
18
2.3
19
84
16
52
31
0
9
58
1.31
99417--99486
27
2.4
30
83
9
83
50
4
18
27
1.66
101058--101108
20
2.5
20
93
0
93
21
25
33
19
1.97
102965--103007
21
2.0
21
81
0
50
27
30
25
16
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104131--104322
31
6.2
31
99
0
377
22
18
23
34
1.96
108562--108590
4
7.2
4
100
0
58
27
0
24
48
1.51
108817--109099
31
9.2
31
97
1
536
22
18
22
35
1.96
111314--111353
21
1.9
21
89
0
62
10
25
40
25
1.86
121747--121833
43
2.0
43
100
0
174
25
16
20
37
1.93
128203--128244
22
2.0
22
86
9
61
54
0
7
38
1.28

Tables:   1

The End!