genome.fa.s810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000810.1 Hibiscus syriacus cultivar Beakdansim tig00001570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56847

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452--691	118	2.0	118	91	4	387	37	16	13	32	1.88
570--1051	181	2.7	181	91	6	772	33	17	14	34	1.90
767--1328	277	2.0	280	88	8	845	34	16	13	35	1.88
290--1427	458	2.4	470	91	6	1813	33	16	14	34	1.90
2624--2685	6	10.3	6	91	0	70	24	32	6	37	1.81
2624--2685	12	5.2	12	94	0	79	24	32	6	37	1.81
2624--2685	18	3.4	18	88	0	79	24	32	6	37	1.81
4141--4904	200	3.8	200	94	0	1289	30	18	15	36	1.91
5126--5186	19	3.3	18	88	2	59	52	11	1	34	1.47
5138--5186	19	2.6	19	96	0	89	55	10	2	32	1.45
6978--7043	33	2.0	33	87	0	96	22	46	0	30	1.52
7076--7117	21	2.0	21	90	0	66	16	30	11	40	1.85
7124--7189	33	2.0	33	84	0	87	22	45	0	31	1.53
7223--7287	21	3.1	21	88	0	94	18	29	10	41	1.84
9504--9550	20	2.4	19	79	10	58	19	14	10	55	1.68
10836--10875	19	2.0	21	90	9	66	45	5	0	50	1.23
12612--12682	31	2.3	31	100	0	142	47	0	7	45	1.30
12631--12703	17	4.4	17	71	13	62	52	0	5	42	1.24
12912--12963	21	2.5	21	81	3	61	38	21	25	15	1.92
12952--13065	20	5.7	20	81	6	104	30	26	18	24	1.98
12931--13064	61	2.2	59	76	10	135	32	26	20	21	1.98
12949--13065	61	1.9	61	83	0	153	32	25	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13585--13636	19	2.7	19	88	5	70	44	25	19	11	1.84
13582--13647	18	3.5	19	81	6	80	46	25	16	10	1.79
13643--13768	19	7.1	19	71	18	92	12	24	19	43	1.85
13676--13760	33	2.5	33	90	1	125	11	25	21	41	1.87
13684--13743	14	3.9	14	72	19	57	10	28	23	38	1.87
13728--13766	20	2.0	20	94	0	69	12	23	15	48	1.79
15890--16005	21	5.5	21	64	19	62	24	37	15	22	1.93
15860--16031	42	4.1	42	83	0	209	23	37	15	23	1.93
15860--16032	84	2.1	84	96	0	319	23	38	15	23	1.93
15890--16061	42	4.1	41	78	9	152	24	36	17	21	1.94
17406--17440	14	2.6	14	90	4	54	28	0	25	45	1.54
17603--17729	33	3.8	33	83	8	168	16	22	17	44	1.87
17596--17724	66	2.0	66	92	0	213	17	21	16	44	1.87
17599--17729	19	7.7	19	62	23	76	16	22	17	44	1.87
20018--20042	12	2.1	12	100	0	50	0	28	0	72	0.86
20217--20270	24	2.2	24	90	0	81	40	20	16	22	1.91
21055--21106	21	2.5	21	81	3	61	38	15	23	23	1.92
21376--21443	20	3.4	20	70	8	66	39	22	22	16	1.92
21360--21463	40	2.9	34	76	15	100	40	21	23	15	1.91
21470--21537	19	3.9	18	83	12	81	13	20	17	48	1.80
21474--21547	19	4.5	16	83	16	66	13	20	18	47	1.82
21674--21710	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23572--23685	19	6.5	19	68	20	79	46	21	20	12	1.82
23611--23701	14	5.9	14	74	20	83	49	23	17	9	1.76
23595--23706	33	3.4	33	95	1	199	48	22	18	10	1.79
23735--23792	14	3.9	14	77	16	62	12	17	22	48	1.80
23718--23808	32	2.8	33	91	3	148	14	18	19	47	1.83
23793--23847	20	2.8	19	83	8	65	16	23	23	36	1.94
24323--24367	18	2.5	18	92	0	81	13	13	44	28	1.81
25700--25749	20	2.5	20	86	0	73	40	26	18	16	1.90
25986--26034	22	2.3	21	80	16	57	22	14	40	22	1.90
25993--26036	22	2.0	22	91	8	72	18	15	43	22	1.88
26225--26276	20	2.6	20	93	0	86	25	21	28	25	1.99
26245--26339	41	2.3	41	78	3	102	22	20	23	34	1.96
26389--26429	21	2.0	21	85	0	55	34	29	17	19	1.94
26929--26966	20	2.0	19	90	10	60	47	5	23	23	1.72
26928--26972	20	2.6	16	80	19	54	44	4	22	28	1.72
28072--28121	21	2.3	21	83	10	57	48	0	0	52	1.00
28076--28131	24	2.4	24	79	8	62	44	0	0	55	0.99
31876--32336	112	4.1	112	93	0	744	46	15	13	24	1.82
32206--32662	182	2.5	182	89	1	675	44	12	15	27	1.82
36159--36186	14	2.0	14	100	0	56	50	7	0	42	1.30
40510--40540	16	1.9	16	93	0	53	25	0	3	70	1.02
40783--41633	182	4.7	182	89	2	1198	41	14	16	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44001--44066	21	3.1	21	93	0	105	45	10	30	13	1.77
44341--44422	34	2.3	36	93	4	141	59	0	39	1	1.05
44341--44422	18	4.7	18	90	6	141	59	0	39	1	1.05
45981--46026	19	2.4	19	96	0	83	32	2	10	54	1.47
46290--47567	200	6.5	198	83	8	1543	38	12	15	34	1.84
46290--47618	399	3.4	393	84	7	1671	38	12	15	34	1.84
50060--50143	23	3.7	23	91	0	132	25	27	27	20	1.99
51245--51290	20	2.3	20	88	7	67	36	13	2	47	1.54
51716--51759	21	2.2	20	87	4	61	15	25	27	31	1.96
53321--53377	20	2.7	20	75	8	51	29	19	19	31	1.96
55747--55952	63	3.3	61	78	10	179	30	23	18	27	1.98
55935--55972	19	2.0	19	89	0	58	18	28	23	28	1.98
56296--56333	13	2.9	14	88	7	53	15	7	15	60	1.57

Tables:   1

The End!