Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008100.1 Hibiscus syriacus cultivar Beakdansim tig00110630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1372717
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 1 of 7
Found at i:26 original size:19 final size:19
Alignment explanation
Indices: 2--39 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1 A
2 AACTGATTTGCGATTCTGG
1 AACTGATTTGCGATTCTGG
21 AACTGATTTGCGATTCTGG
1 AACTGATTTGCGATTCTGG
40 GGATCGCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (19 bp):
AACTGATTTGCGATTCTGG
Found at i:6759 original size:16 final size:16
Alignment explanation
Indices: 6735--6768 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
6725 TATCGCCGAT
*
6735 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
6751 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
6767 CG
1 CG
6769 TTAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:7238 original size:36 final size:36
Alignment explanation
Indices: 7193--7264 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 36
7183 AAATCTACCA
*
7193 AAATTTTACCAAACTTTG-AAAAACATTTTTCAAAG
1 AAATTTTACCAAACTTTGAAAAAACATTTTCCAAAG
7228 AAATATTTACCAAACTTTGAAAAAACATTTTCCAAAG
1 AAAT-TTTACCAAACTTTGAAAAAACATTTTCCAAAG
7265 TTGGTTGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 4 0.12
36 14 0.41
37 16 0.47
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (36 bp):
AAATTTTACCAAACTTTGAAAAAACATTTTCCAAAG
Found at i:7283 original size:35 final size:36
Alignment explanation
Indices: 7198--7284 Score: 106
Period size: 35 Copynumber: 2.4 Consensus size: 36
7188 TACCAAAATT
* *
7198 TTACCAAACTTTG-AAAAACATTTTTCAAAGAAATAT
1 TTACCAAACTTTGAAAAAACATTTTCCAAAG-AATAG
* *
7234 TTACCAAACTTTGAAAAAACATTTTCCAAAG-TTGG
1 TTACCAAACTTTGAAAAAACATTTTCCAAAGAATAG
*
7269 TTGCCAAACTTTGAAA
1 TTACCAAACTTTGAAA
7285 CTTTTAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 16 0.36
36 13 0.29
37 16 0.36
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (36 bp):
TTACCAAACTTTGAAAAAACATTTTCCAAAGAATAG
Found at i:9129 original size:2 final size:2
Alignment explanation
Indices: 9118--9146 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9108 GCTATTCCTA
9118 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9147 CTAATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:9837 original size:2 final size:2
Alignment explanation
Indices: 9830--9882 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
9820 TATTGTGTTC
9830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9872 AT AT AT AT AT A
1 AT AT AT AT AT A
9883 AGGTTATAGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10531 original size:35 final size:31
Alignment explanation
Indices: 10483--10580 Score: 97
Period size: 31 Copynumber: 3.0 Consensus size: 31
10473 GTGAAAAATA
** * *
10483 TTTTTTTGGTCAAAATAAGTACCTAAACTTAT
1 TTTTTTTTATCAAAATAGGTACCTAAA-GTAT
**
10515 CCTTTTTATTTATCAAAATAGGTATTTAAAGTAT
1 --TTTTT-TTTATCAAAATAGGTACCTAAAGTAT
*
10549 TTTTTTTTATCAAAATAGGTGCCTAAAGTAT
1 TTTTTTTTATCAAAATAGGTACCTAAAGTAT
10580 T
1 T
10581 CAATATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
31 24 0.44
32 5 0.09
34 8 0.15
35 17 0.31
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (31 bp):
TTTTTTTTATCAAAATAGGTACCTAAAGTAT
Found at i:13273 original size:7 final size:7
Alignment explanation
Indices: 13258--13365 Score: 65
Period size: 7 Copynumber: 15.4 Consensus size: 7
13248 TATGATATGA
*
13258 TTTAAGG
1 TTTAGGG
13265 TTTAGGG
1 TTTAGGG
**
13272 TTTATAG
1 TTTAGGG
*
13279 TTTAGAG
1 TTTAGGG
*
13286 TTTA-TG
1 TTTAGGG
* *
13292 TAATAGGA
1 T-TTAGGG
*
13300 TTTAAGG
1 TTTAGGG
**
13307 TTTAGAA
1 TTTAGGG
*
13314 TTTAGTG
1 TTTAGGG
*
13321 TTTATGG
1 TTTAGGG
**
13328 TTTAAAG
1 TTTAGGG
*
13335 TTTAGGA
1 TTTAGGG
13342 TTTAGGG
1 TTTAGGG
13349 TTTAGGG
1 TTTAGGG
13356 TTTAGGG
1 TTTAGGG
13363 TTT
1 TTT
13366 TAGAGTTTAT
Statistics
Matches: 75, Mismatches: 24, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
6 2 0.03
7 72 0.96
8 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:13287 original size:42 final size:41
Alignment explanation
Indices: 13236--13395 Score: 144
Period size: 42 Copynumber: 3.8 Consensus size: 41
13226 AAGGTTTAGG
* *
13236 GTTTAGAGTTGATATGATATGATTTAAGGTTTAGGGTTTAT
1 GTTTAGAGTTTATATGATAGGATTTAAGGTTTAGGGTTTAT
* * **
13277 AGTTTAGAGTTTATGTAATAGGATTTAAGGTTTAGAATTTAGT
1 -GTTTAGAGTTTATATGATAGGATTTAAGGTTTAGGGTTTA-T
* * * *
13320 GTTTATG-GTTTA-AAGTTTAGGATTTAGGGTTTAGGGTTTAGG
1 GTTTA-GAGTTTATATG-ATAGGATTTAAGGTTTAGGGTTTA-T
* *
13362 GTTTTAGAGTTTATGTGATATGATTTAAGGTTTA
1 G-TTTAGAGTTTATATGATAGGATTTAAGGTTTA
13396 TAGTTTAGGG
Statistics
Matches: 93, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 67 0.72
43 25 0.27
44 1 0.01
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (41 bp):
GTTTAGAGTTTATATGATAGGATTTAAGGTTTAGGGTTTAT
Found at i:13289 original size:28 final size:27
Alignment explanation
Indices: 13258--13374 Score: 78
Period size: 28 Copynumber: 4.1 Consensus size: 27
13248 TATGATATGA
13258 TTTAAGGTTTAGGGTTTATAGTTTAGAG
1 TTTAAGGTTTAGGGTTTA-AGTTTAGAG
* * * *
13286 TTT-ATGTAATAGGATTTAAGGTTTAGAA
1 TTTAAGGT-TTAGGGTTTAA-GTTTAGAG
*
13314 TTT-AGTGTTTATGGTTTAAAGTTTAG-G
1 TTTAAG-GTTTAGGGTTT-AAGTTTAGAG
* *
13341 ATTTAGGGTTTAGGGTTTAGGGTTTTAGAG
1 -TTTAAGGTTTAGGGTTTA-AG-TTTAGAG
13371 TTTA
1 TTTA
13375 TGTGATATGA
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
27 5 0.07
28 48 0.71
29 14 0.21
30 1 0.01
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (27 bp):
TTTAAGGTTTAGGGTTTAAGTTTAGAG
Found at i:13373 original size:15 final size:14
Alignment explanation
Indices: 13300--13409 Score: 57
Period size: 14 Copynumber: 7.8 Consensus size: 14
13290 TGTAATAGGA
* *
13300 TTTAAGGTTTAGAA
1 TTTAGGGTTTAGAG
*
13314 TTTAGTGTTTATG-G
1 TTTAGGGTTTA-GAG
**
13328 TTTAAAGTTTAG-G
1 TTTAGGGTTTAGAG
*
13341 ATTTAGGGTTTAGGG
1 -TTTAGGGTTTAGAG
13356 TTTAGGGTTTTAGAG
1 TTTAGGG-TTTAGAG
* *
13371 TTTA-TGTGATATGA-
1 TTTAGGGT-TTA-GAG
* *
13385 TTTAAGGTTTATAG
1 TTTAGGGTTTAGAG
13399 TTTAGGGTTTA
1 TTTAGGGTTTA
13410 TTGTTCAAAG
Statistics
Matches: 74, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
13 4 0.05
14 54 0.73
15 16 0.22
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (14 bp):
TTTAGGGTTTAGAG
Found at i:13388 original size:29 final size:29
Alignment explanation
Indices: 13279--13451 Score: 101
Period size: 28 Copynumber: 6.1 Consensus size: 29
13269 GGGTTTATAG
* *
13279 TTTAGAGTTTATGTAATAGGATTTAAGG-
1 TTTAGAGTTTATGTGATATGATTTAAGGT
* * * *
13307 TTTAGAATTTA-GTGTTTATGGTTTAAAG-
1 TTTAGAGTTTATGTG-ATATGATTTAAGGT
* * * * *
13335 TTTAG-GATTTA-GGGTTTAGGGTTTAGGGT
1 TTTAGAG-TTTATGTG-ATATGATTTAAGGT
13364 TTTAGAGTTTATGTGATATGATTTAAGG-
1 TTTAGAGTTTATGTGATATGATTTAAGGT
* * * * *
13392 TTTATAGTTTA-GGGTTTATTG-TTCAAAGT
1 TTTAGAGTTTATGTG-ATA-TGATTTAAGGT
13421 TTTAGAGTTTATGTGATATGATTTAAGGT
1 TTTAGAGTTTATGTGATATGATTTAAGGT
13450 TT
1 TT
13452 ATATGTTAAG
Statistics
Matches: 109, Mismatches: 26, Indels: 19
0.71 0.17 0.12
Matches are distributed among these distances:
27 4 0.04
28 60 0.55
29 40 0.37
30 5 0.05
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.48
Consensus pattern (29 bp):
TTTAGAGTTTATGTGATATGATTTAAGGT
Found at i:13395 original size:57 final size:56
Alignment explanation
Indices: 13323--13479 Score: 190
Period size: 57 Copynumber: 2.8 Consensus size: 56
13313 ATTTAGTGTT
* * *
13323 TATGGTTTAAAGTTTAGGATTTAGGGTTTAGGGTTTAGGGTTTTAGAGTTTATGTGA
1 TATGATTTAAGGTTTA-TATTTAGGGTTTAGGGTTTAGGGTTTTAGAGTTTATGTGA
** * **
13380 TATGATTTAAGGTTTATAGTTTAGGGTTTATTGTTCAAAGTTTTAGAGTTTATGTGA
1 TATGATTTAAGGTTTATA-TTTAGGGTTTAGGGTTTAGGGTTTTAGAGTTTATGTGA
*
13437 TATGATTTAAGGTTTATATGTTAAGGG-TTAGGGGTTAGGGTTT
1 TATGATTTAAGGTTTATAT-TT-AGGGTTTAGGGTTTAGGGTTT
13480 AAGTTATAAC
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
56 2 0.02
57 77 0.93
58 4 0.05
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (56 bp):
TATGATTTAAGGTTTATATTTAGGGTTTAGGGTTTAGGGTTTTAGAGTTTATGTGA
Found at i:13409 original size:21 final size:21
Alignment explanation
Indices: 13295--13409 Score: 81
Period size: 21 Copynumber: 5.4 Consensus size: 21
13285 GTTTATGTAA
*
13295 TAGGATTTAAGGTTTAGAATT
1 TAGGATTTAAGGTTTAGAGTT
* *
13316 TAGTG-TTTATGGTTTAAAGTT
1 TAG-GATTTAAGGTTTAGAGTT
* *
13337 TAGGATTTAGGGTTTAGGGTT
1 TAGGATTTAAGGTTTAGAGTT
* * * *
13358 TAGGGTTTTAGAGTTTA-TGTGA
1 TAGGATTTAAG-GTTTAGAGT-T
* *
13380 TATGATTTAAGGTTTATAGTT
1 TAGGATTTAAGGTTTAGAGTT
*
13401 TAGGGTTTA
1 TAGGATTTA
13410 TTGTTCAAAG
Statistics
Matches: 71, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
20 1 0.01
21 54 0.76
22 16 0.23
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (21 bp):
TAGGATTTAAGGTTTAGAGTT
Found at i:15412 original size:12 final size:12
Alignment explanation
Indices: 15395--15427 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15385 GTCGAGCTTG
15395 AATCGAGCTCAC
1 AATCGAGCTCAC
15407 AATCGAGCTCAC
1 AATCGAGCTCAC
*
15419 AATTGAGCT
1 AATCGAGCT
15428 TCAATTGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.21
Consensus pattern (12 bp):
AATCGAGCTCAC
Found at i:16620 original size:20 final size:20
Alignment explanation
Indices: 16526--16894 Score: 451
Period size: 20 Copynumber: 18.4 Consensus size: 20
16516 GATTTTCCAT
* ** *
16526 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
16546 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
16566 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16586 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
16606 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
16626 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16646 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
16666 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16686 AA-CTGCAACGTGTATCCGTA
1 AATC-GCAACGCGTATCCGTA
16706 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16726 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
16746 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16766 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
16786 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
16806 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
16826 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
16846 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
16866 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
16886 AATCACAAC
1 AATCGCAAC
16895 ACTTAAATTT
Statistics
Matches: 305, Mismatches: 34, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
19 4 0.01
20 297 0.97
21 4 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:17615 original size:24 final size:24
Alignment explanation
Indices: 17576--17622 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
17566 AAATTTGGTC
17576 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
17600 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
17623 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:20117 original size:19 final size:19
Alignment explanation
Indices: 20095--20387 Score: 392
Period size: 19 Copynumber: 16.4 Consensus size: 19
20085 CGGAAAATAC
*
20095 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
20114 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
20128 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
20148 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
20162 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20181 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
20200 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
20214 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
20233 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20252 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20271 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20290 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20309 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20328 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
20342 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20361 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
20380 AATCGCAA
1 AATCGCAA
20388 CGAGATAATC
Statistics
Matches: 245, Mismatches: 8, Indels: 42
0.83 0.03 0.14
Matches are distributed among these distances:
14 38 0.16
15 1 0.00
16 14 0.06
17 12 0.05
18 2 0.01
19 165 0.67
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:20210 original size:52 final size:55
Alignment explanation
Indices: 20123--20409 Score: 356
Period size: 52 Copynumber: 5.4 Consensus size: 55
20113 AAATCCCAAC
*
20123 ATGAAAATCGCAATGCGGAAATGAAAATCGCAA-CG-A-GAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAAGCGAATGAAAATCGCAATGCGAA
20176 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-CGACA-G--AATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGA-ATGAAAATCGCAATGCGAA
*
20228 ATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
20285 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
20340 A-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAATGCGAA
*
20390 A-GATAATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAAT
20410 TATAAACGCA
Statistics
Matches: 222, Mismatches: 2, Indels: 21
0.91 0.01 0.09
Matches are distributed among these distances:
50 2 0.01
52 127 0.57
53 16 0.07
54 6 0.03
55 7 0.03
57 64 0.29
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (55 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAAATCGCAATGCGAA
Found at i:20306 original size:128 final size:128
Alignment explanation
Indices: 20095--20409 Score: 462
Period size: 128 Copynumber: 2.6 Consensus size: 128
20085 CGGAAAATAC
* *
20095 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCA
* *
20155 A--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAG
65 ATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
*
20214 AATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
20279 TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
66 TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
*
20342 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GATAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
20402 TGCGAAAT
66 TGCGAAAT
20410 TATAAACGCA
Statistics
Matches: 179, Mismatches: 7, Indels: 16
0.89 0.03 0.08
Matches are distributed among these distances:
119 24 0.13
121 1 0.01
123 34 0.19
124 17 0.09
125 2 0.01
126 2 0.01
127 1 0.01
128 98 0.55
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (128 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
TGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAG
Found at i:20525 original size:19 final size:19
Alignment explanation
Indices: 20416--20517 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
20406 AAATTATAAA
20416 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
20435 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
20455 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
20471 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
20488 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
20507 CGCATTGCGAT
1 CGCATTGCGAT
20518 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:20643 original size:14 final size:14
Alignment explanation
Indices: 20624--20660 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
20614 CATCAATTAC
20624 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
20638 ACAAATCATCTTTT
1 ACAAATCAACTTTT
20652 ACAAATCAA
1 ACAAATCAA
20661 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:22602 original size:19 final size:19
Alignment explanation
Indices: 22562--22696 Score: 110
Period size: 19 Copynumber: 7.6 Consensus size: 19
22552 TAGTTTACTT
* *
22562 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
22582 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
22601 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
22620 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
22634 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
22653 TCGCAA--CG-AA--AGAA
1 TCGCAACGCGAAACCAAAA
**
22667 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
22686 TCGCAATGCGA
1 TCGCAACGCGA
22697 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 18 0.19
15 1 0.01
16 6 0.06
17 6 0.06
18 1 0.01
19 50 0.53
20 13 0.14
ACGTcount: A:0.46, C:0.26, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:22637 original size:14 final size:14
Alignment explanation
Indices: 22618--22674 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
22608 GCGAAATGAA
22618 AATCGCAACGACAG
1 AATCGCAACGACAG
*
22632 AATCGCAACGCGAAACCAA
1 AATCGCAA--CG--A-CAG
*
22651 AATCGCAACGAAAG
1 AATCGCAACGACAG
22665 AATCGCAACG
1 AATCGCAACG
22675 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.28, G:0.19, T:0.07
Consensus pattern (14 bp):
AATCGCAACGACAG
Found at i:22641 original size:33 final size:33
Alignment explanation
Indices: 22599--22691 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
22589 GCGAAACCAA
*
22599 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
**
22632 AATCGCAACGCGAAACCAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
22665 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
22692 TGCGATTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.47, C:0.25, G:0.19, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:22688 original size:52 final size:54
Alignment explanation
Indices: 22562--22696 Score: 149
Period size: 52 Copynumber: 2.5 Consensus size: 54
22552 TAGTTTACTT
*
22562 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
*
22620 TCGCAA-CGACA-G--AATCGCAACGCGAAACCAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
22667 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
22697 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.07
50 6 0.09
52 39 0.57
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.26, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:22714 original size:19 final size:19
Alignment explanation
Indices: 22692--22820 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
22682 AAAATCGCAA
22692 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
22711 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
22725 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
22744 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
22758 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
22777 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
22796 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
22816 TGCGA
1 TGCGA
22821 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:22734 original size:33 final size:33
Alignment explanation
Indices: 22692--22783 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
22682 AAAATCGCAA
22692 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
22725 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
22758 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
22784 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:23204 original size:93 final size:93
Alignment explanation
Indices: 22864--23333 Score: 894
Period size: 93 Copynumber: 5.1 Consensus size: 93
22854 TTGAATGGAT
22864 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
22929 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
22957 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
23021 AGTTTAGCA-AATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
23048 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
23113 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
23141 AAATTTACTTTCAACC-AAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATATAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
23204 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
23232 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
23297 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
23325 AAATTTACT
1 AAATTTACT
23334 AAGCAATCTA
Statistics
Matches: 370, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
91 125 0.34
92 112 0.30
93 133 0.36
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:23220 original size:184 final size:184
Alignment explanation
Indices: 22864--23333 Score: 906
Period size: 184 Copynumber: 2.6 Consensus size: 184
22854 TTGAATGGAT
22864 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
22929 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
22994 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAAATTGGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAAATTGGCAGCAACCGAAC
23048 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
23113 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACC-AAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
23177 TATATTTCACAGTGTTAAAGAATATACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCA-AATTGGCAGCAACCGAAC
23232 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
23297 AGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
23334 AAGCAATCTA
Statistics
Matches: 283, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
183 55 0.19
184 228 0.81
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (184 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAAATTGGCAGCAACCGAAC
Found at i:25051 original size:14 final size:14
Alignment explanation
Indices: 25032--25121 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
25022 TTGAAATGAA
25032 AATCGCAACGAGAG
1 AATCGCAACGAGAG
25046 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
25063 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
25079 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
25098 AATCGCAACGAGAG
1 AATCGCAACGAGAG
25112 AATCGCAACG
1 AATCGCAACG
25122 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:25069 original size:33 final size:33
Alignment explanation
Indices: 25024--25138 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
25014 TCTTTTGGTT
25024 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
25057 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
25090 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
25123 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
25139 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:25070 original size:19 final size:18
Alignment explanation
Indices: 25031--25143 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
25021 GTTGAAATGA
25031 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
25046 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
25063 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
25079 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
25096 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
25112 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
25129 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
25144 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:25174 original size:14 final size:14
Alignment explanation
Indices: 25155--25209 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
25145 TTTGGTTTCG
25155 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
25169 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
25188 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
25202 CGTTGCGA
1 CGTTGCGA
25210 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:25187 original size:33 final size:33
Alignment explanation
Indices: 25139--25209 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
25129 AAAATCGCAA
**
25139 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
25172 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
25205 TGCGA
1 TGCGA
25210 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:25217 original size:33 final size:33
Alignment explanation
Indices: 25150--25231 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
25140 GCGATTTTGG
***
25150 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
25183 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
25216 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
25232 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:25236 original size:20 final size:20
Alignment explanation
Indices: 25162--25250 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
25152 TCGCGTTGCG
25162 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
25182 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
25195 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
25215 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
25235 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
25251 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:25370 original size:33 final size:33
Alignment explanation
Indices: 25328--25398 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
25318 AATACTAACT
*
25328 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
25361 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
25394 TGAAA
1 TGAAA
25399 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:25632 original size:22 final size:22
Alignment explanation
Indices: 25580--25634 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
25570 TGGTTGTGAG
**
25580 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
25602 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
25624 GGATTTCTTCG
1 GGATTTCTTCG
25635 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:25805 original size:20 final size:20
Alignment explanation
Indices: 25780--25973 Score: 212
Period size: 20 Copynumber: 9.6 Consensus size: 20
25770 CTTTAAATAT
25780 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
25800 CGCGTTGCGATTTTATGTATTTA
1 CGCGTTGCGA-TTTACGGA--TA
*
25823 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
25842 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
25862 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
25882 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
25902 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
25922 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
25942 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
25962 CGCGTTGCGATT
1 CGCGTTGCGATT
25974 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.01
20 121 0.83
21 13 0.09
22 8 0.05
23 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:25968 original size:60 final size:60
Alignment explanation
Indices: 25780--25973 Score: 244
Period size: 60 Copynumber: 3.2 Consensus size: 60
25770 CTTTAAATAT
**
25780 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTA-TTCGCGTTGCGATTTACGGATA
* * *** *
25842 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
25902 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
25962 CGCGTTGCGATT
1 CGCGTTGCGATT
25974 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
60 78 0.70
61 5 0.05
62 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:26054 original size:20 final size:20
Alignment explanation
Indices: 26029--26080 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
26019 AAGAATCGCG
*
26029 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
26049 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
26069 TTGCGATTCTGG
1 TTGCGATTCTGG
26081 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:35506 original size:23 final size:23
Alignment explanation
Indices: 35480--35524 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
35470 AACTTTGAAT
*
35480 TTATAAAATGTTTTCTTTTGTCC
1 TTATAAAACGTTTTCTTTTGTCC
* * *
35503 TTATGACACGTTTTTTTTTGTC
1 TTATAAAACGTTTTCTTTTGTC
35525 TTTTGACATG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (23 bp):
TTATAAAACGTTTTCTTTTGTCC
Found at i:49621 original size:19 final size:19
Alignment explanation
Indices: 49584--49622 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
49574 GTTTATTATA
* *
49584 AAAAATAATATTATTATTT
1 AAAAATAATATAATAATTT
*
49603 AAAAATATTATAATAATTT
1 AAAAATAATATAATAATTT
49622 A
1 A
49623 GTTAATTCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAAATAATATAATAATTT
Found at i:54823 original size:3 final size:3
Alignment explanation
Indices: 54815--54873 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
54805 GTAATATATA
*
54815 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
54863 AAT AAT AAT AA
1 AAT AAT AAT AA
54874 ATATATAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:55331 original size:113 final size:111
Alignment explanation
Indices: 55148--57949 Score: 4292
Period size: 113 Copynumber: 24.8 Consensus size: 111
55138 AGAATCATGC
* *
55148 AAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTCCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
* * * * * * *
55213 TATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCA
65 TATGAACT-TC-CTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
55262 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* *
55327 ATGAACTCGCCCTGGCAATGCTGAT-CATCAAATGATGAATTCAAGCG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
55374 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * *
55439 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGTG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
55487 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
*
55552 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCA
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
55600 AAAAGTTGAACACGTTCTTCTCATTATGAACTTCTTCTT-TCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCT-TTCTTCAGATGAGTTCTTCTCAT
55664 TATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
65 TATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
55713 AAAAGTTGAACACGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * *
55778 ATGAACTCGACCTGGCAATGCTGATCCATCGAATAATGAATTCAAGCG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
55826 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
55891 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
55939 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
56004 ATGAACTTGACCTGGTAATGCTGAT-CATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
* *
56051 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCTTTCTACAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * * * *
56116 ATGAACTCTCTCT--AAACGTTGATCCATCGAGTGATGAATTCGAGCA
66 ATGAACT-TC-CTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
56162 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* *
56227 ATAAACTTTCCTTGG-AATGTTGATCCATCAAATGATGAATTCAAGCG
66 ATGAAC-TTCC-TGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
56274 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
56339 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
56387 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
*
56452 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTTAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
56500 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
*
56565 ATGAACTTGACCTAGTAATGCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
56613 AAAAGTTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCCCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
* * * *
56678 TATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGTG
65 TATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
56727 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
56792 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
* *
56840 AAAAGTTGAACAAGTTCTTCT-ATTATGAACTTCTTCTTCCTTCTACAGATGAGTTCTTCT-ATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
56903 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
* *
56951 AAAAGTTGAACAAGTTCTTCGCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTTTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * * * *
57016 ATGAACTCTCTCTGGAAACGTTGATCCATCGAGTGATGAATTCGAGCA
66 ATGAACT-TC-CTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
57064 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* *
57129 ATAAACTTCCCTTGG-AATGCTGATCCATCAAATGATGAATTCAAGCA
66 ATGAACTT-CC-TGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
57176 AAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * *
57241 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGAG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
57289 AAATA-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
1 AAA-AGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
*
57353 TATGAACTTGACCTGGTAATGTTGATCCATCAAATGATGAATTCAAGCG
65 TATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
57402 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
*
57467 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGAAGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
57515 AAAAGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
57580 ATGAACTCGACCTAGCAATACTGATCTATCGAATGATGAATTCAAGCG
66 ATGAACT--TCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
57628 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
57693 ATGAACTTGACCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
* * *
57741 AAAAATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
*
57806 ATGAACTTGACCTGGTAATTCTGATCCATCAAATGATGAATTCAAGCG
66 ATGAACTT--CCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
*
57854 AAAAATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
57919 ATGAACTCTCTCTGGAAAAGTTGATCCATCA
66 ATGAACT-TC-CTGGTAATGCTGATCCATCA
57950 TTATGAATTC
Statistics
Matches: 2502, Mismatches: 140, Indels: 93
0.91 0.05 0.03
Matches are distributed among these distances:
110 8 0.00
111 161 0.06
112 477 0.19
113 1742 0.70
114 114 0.05
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (111 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTCCTGGTAATGCTGATCCATCAAATGATGAATTCAAGCG
Found at i:61163 original size:114 final size:113
Alignment explanation
Indices: 60954--61176 Score: 329
Period size: 114 Copynumber: 2.0 Consensus size: 113
60944 GATCATGCAG
* * * *
60954 TTCATCTTTCAATTCCAATGATTGGTTATGGGGTTCCTACCGACCAGATCAGATAACTCAAAGAA
1 TTCATCTTTCAAATCCAATGATTGATTATGGGGTTCATACCAACCAGATCAGATAACTCAAAGAA
* * * *
61019 CACTTCGAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 CACTTCCAGAAGATGCTATTAGGTCCCCTTATTTATACTATGAGCAAA
* * * *
61067 TTCATCTTTCAAATCCAATGATTGATTTTGGGGTTCATACCAAATCATATCATATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTATGGGGTTCATACC-AACCAGATCAGATAACTCAAAGA
61132 ACACTTCCAGAAGATGCTATTAGGTCCCCTTATTTATACTATGAG
65 ACACTTCCAGAAGATGCTATTAGGTCCCCTTATTTATACTATGAG
61177 AACGTGGCAC
Statistics
Matches: 97, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 37 0.38
114 60 0.62
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (113 bp):
TTCATCTTTCAAATCCAATGATTGATTATGGGGTTCATACCAACCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATGCTATTAGGTCCCCTTATTTATACTATGAGCAAA
Found at i:63356 original size:12 final size:12
Alignment explanation
Indices: 63339--63375 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
63329 CCCCTTCTTC
63339 TTTTTTCCTTTT
1 TTTTTTCCTTTT
63351 TTTTTTCCTTTT
1 TTTTTTCCTTTT
63363 TTTCTTT-CTTTT
1 TTT-TTTCCTTTT
63375 T
1 T
63376 CCTCATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 21 0.88
13 3 0.12
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTCCTTTT
Found at i:63363 original size:20 final size:20
Alignment explanation
Indices: 63338--63392 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
63328 TCCCCTTCTT
63338 CTTTTTTCCTTTTTTTTTTC
1 CTTTTTTCCTTTTTTTTTTC
* *
63358 CTTTTTTTC-TTTCTTTTTC
1 CTTTTTTCCTTTTTTTTTTC
63377 CTCATTTTTCCTTTTT
1 CT--TTTTTCCTTTTT
63393 CATTTGTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 11 0.39
20 8 0.29
21 6 0.21
22 3 0.11
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (20 bp):
CTTTTTTCCTTTTTTTTTTC
Found at i:66192 original size:6 final size:6
Alignment explanation
Indices: 66183--66235 Score: 61
Period size: 6 Copynumber: 8.7 Consensus size: 6
66173 AAACGTAAAA
* * * *
66183 AAATGC AAATGT AAATGC AAAATGT AAATGC AAATGT AAATGC AAATGT
1 AAATGC AAATGC AAATGC -AAATGC AAATGC AAATGC AAATGC AAATGC
66232 AAAT
1 AAAT
66236 ATATGAATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.25
Consensus pattern (6 bp):
AAATGC
Found at i:66198 original size:12 final size:12
Alignment explanation
Indices: 66183--66235 Score: 97
Period size: 12 Copynumber: 4.3 Consensus size: 12
66173 AAACGTAAAA
66183 AAATGCAAATGT
1 AAATGCAAATGT
66195 AAATGCAAAATGT
1 AAATGC-AAATGT
66208 AAATGCAAATGT
1 AAATGCAAATGT
66220 AAATGCAAATGT
1 AAATGCAAATGT
66232 AAAT
1 AAAT
66236 ATATGAATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 28 0.70
13 12 0.30
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.25
Consensus pattern (12 bp):
AAATGCAAATGT
Found at i:67764 original size:20 final size:21
Alignment explanation
Indices: 67717--67775 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
67707 AATAAAATTT
*
67717 AATACTTAA-AAAATAAAATAA
1 AATA-TTAATAAAATAATATAA
*
67738 AACATTAATAAAATAATAT-A
1 AATATTAATAAAATAATATAA
67758 AATATT-ATAAAAATAATA
1 AATATTAAT-AAAATAATA
67776 AATATATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 2 0.06
20 19 0.58
21 12 0.36
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (21 bp):
AATATTAATAAAATAATATAA
Found at i:67778 original size:18 final size:19
Alignment explanation
Indices: 67755--67790 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
67745 ATAAAATAAT
67755 ATAAATAT-TATAAAAATA
1 ATAAATATATATAAAAATA
67773 ATAAATATATATAAAAAT
1 ATAAATATATATAAAAAT
67791 TTTGGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATATATATAAAAATA
Found at i:67782 original size:20 final size:19
Alignment explanation
Indices: 67747--67790 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
67737 AAACATTAAT
67747 AAAATAATATAAATATTATA
1 AAAATAATATAAATA-TATA
67767 AAAATAATA-AATATATATA
1 AAAATAATATAA-ATATATA
67786 AAAAT
1 AAAAT
67791 TTTGGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATAATATAAATATATA
Found at i:78968 original size:25 final size:24
Alignment explanation
Indices: 78933--78998 Score: 64
Period size: 25 Copynumber: 2.8 Consensus size: 24
78923 TTTATATCTG
*
78933 TAAAAAAATTAATTAAATAAATTAT
1 TAAAAATATTAATTAAATAAA-TAT
* * *
78958 TAAATATATTAAATACA-AAATAT
1 TAAAAATATTAATTAAATAAATAT
*
78981 TAAAAATA-TAATAAAATA
1 TAAAAATATTAATTAAATA
78999 TACCTTAGAC
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
22 5 0.16
23 11 0.34
24 3 0.09
25 13 0.41
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (24 bp):
TAAAAATATTAATTAAATAAATAT
Found at i:80752 original size:9 final size:9
Alignment explanation
Indices: 80740--80791 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
80730 TAATATTTTG
80740 TATTTAATT
1 TATTTAATT
*
80749 TATTTAA-G
1 TATTTAATT
80757 TATTTAATT
1 TATTTAATT
80766 TATTTAA--
1 TATTTAATT
* *
80773 TATTTTACT
1 TATTTAATT
80782 TATTTAATT
1 TATTTAATT
80791 T
1 T
80792 TTTTGCAGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.17
8 7 0.20
9 22 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TATTTAATT
Found at i:80761 original size:17 final size:17
Alignment explanation
Indices: 80739--80788 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
80729 TTAATATTTT
80739 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
80756 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
* *
80773 -TATTTTACTTATTTAA
1 GTATTTAATTTATTTAA
80789 TTTTTTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:80784 original size:16 final size:16
Alignment explanation
Indices: 80748--80793 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
80738 TGTATTTAAT
* *
80748 TTATTTAAGTATTTAAT
1 TTATTTAA-TATTTTAC
80765 TTATTTAATATTTTAC
1 TTATTTAATATTTTAC
80781 TTATTTAAT-TTTT
1 TTATTTAATATTTT
80794 TTGCAGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATTTAATATTTTAC
Found at i:88512 original size:37 final size:36
Alignment explanation
Indices: 88462--88549 Score: 149
Period size: 38 Copynumber: 2.4 Consensus size: 36
88452 TTTTGTTCGA
88462 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGG
1 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTC-G
88499 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCG
1 GTCGGGTCGGG-TTTTTTAAGTGTGATATTCGGGTCG
*
88536 GTCGGTTCGGGTTT
1 GTCGGGTCGGGTTT
88550 AGGGTGAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 3 0.06
37 22 0.45
38 24 0.49
ACGTcount: A:0.09, C:0.11, G:0.40, T:0.40
Consensus pattern (36 bp):
GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCG
Found at i:88524 original size:38 final size:37
Alignment explanation
Indices: 88462--88549 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
88452 TTTTGTTCGA
88462 GTCGGGTCGGG-TTTTTTAAGTGTGATATTCGGGTCGG
1 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTC-G
88499 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCG
1 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCG
*
88536 GTCGGTTCGGGTTT
1 GTCGGGTCGGGTTT
88550 AGGGTGAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
37 25 0.51
38 24 0.49
ACGTcount: A:0.09, C:0.11, G:0.40, T:0.40
Consensus pattern (37 bp):
GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCG
Found at i:89359 original size:16 final size:18
Alignment explanation
Indices: 89338--89383 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
89328 TATGGAATTG
89338 GATTCCAATTCC-T-ACA
1 GATTCCAATTCCTTCACA
89354 GATTCCAATTCCTTCACA
1 GATTCCAATTCCTTCACA
89372 GATTCCAATTCC
1 GATTCCAATTCC
89384 CTCATGTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 12 0.43
17 1 0.04
18 15 0.54
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.33
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Found at i:98643 original size:182 final size:182
Alignment explanation
Indices: 98336--98699 Score: 710
Period size: 182 Copynumber: 2.0 Consensus size: 182
98326 GTTAGAACCT
98336 AAACCGGGATATTTCAAGGAATTAGAGCCCACCCCAAGACCTCATTCCAAGCACTTGGCTGCTTT
1 AAACCGGGATATTTCAAGGAATTAGAGCCCACCCCAAGACCTCATTCCAAGCACTTGGCTGCTTT
98401 GATTTTATTTTACTTTATGTTCAAAGAATGCGAATTAGACAAATATGTGGTTAAGGTTTGTTTGA
66 GATTTTATTTTACTTTATGTTCAAAGAATGCGAATTAGACAAATATGTGGTTAAGGTTTGTTTGA
*
98466 AATTAGTATGCGGGATAGAGATCATGTTCGTGTAGGAATAATAAGCATGTGA
131 AATTAGTATGCGGGATAGAGATCATGTCCGTGTAGGAATAATAAGCATGTGA
*
98518 AAACCGGGATATTTCAAGGAATTAGAGCCCACCCCAAGACCTCATTCCAAGCCCTTGGCTGCTTT
1 AAACCGGGATATTTCAAGGAATTAGAGCCCACCCCAAGACCTCATTCCAAGCACTTGGCTGCTTT
98583 GATTTTATTTTACTTTATGTTCAAAGAATGCGAATTAGACAAATATGTGGTTAAGGTTTGTTTGA
66 GATTTTATTTTACTTTATGTTCAAAGAATGCGAATTAGACAAATATGTGGTTAAGGTTTGTTTGA
98648 AATTAGTATGCGGGATAGAGATCATGTCCGTGTAGGAATAATAAGCATGTGA
131 AATTAGTATGCGGGATAGAGATCATGTCCGTGTAGGAATAATAAGCATGTGA
98700 GGTAGATATC
Statistics
Matches: 180, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
182 180 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (182 bp):
AAACCGGGATATTTCAAGGAATTAGAGCCCACCCCAAGACCTCATTCCAAGCACTTGGCTGCTTT
GATTTTATTTTACTTTATGTTCAAAGAATGCGAATTAGACAAATATGTGGTTAAGGTTTGTTTGA
AATTAGTATGCGGGATAGAGATCATGTCCGTGTAGGAATAATAAGCATGTGA
Found at i:100474 original size:2 final size:2
Alignment explanation
Indices: 100462--100493 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
100452 TCATTTATCC
*
100462 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100494 CTTGTTATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107762 original size:21 final size:22
Alignment explanation
Indices: 107736--107787 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
107726 AGATGGAATC
107736 GATCCCCCCTTG-A-GGGAACT
1 GATCCCCCCTTGAAGGGGAACT
*
107756 GATTCCCCCTTTGAAGGGGAACT
1 GA-TCCCCCCTTGAAGGGGAACT
107779 GATCCCCCC
1 GATCCCCCC
107788 ACAGGGGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 9 0.33
22 7 0.26
23 9 0.33
ACGTcount: A:0.19, C:0.37, G:0.23, T:0.21
Consensus pattern (22 bp):
GATCCCCCCTTGAAGGGGAACT
Found at i:107806 original size:20 final size:20
Alignment explanation
Indices: 107770--107807 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
107760 CCCCCTTTGA
*
107770 AGGGGAACTGATCCCCCCAC
1 AGGGGAACTGATACCCCCAC
107790 AGGGGAA-TCGATACCCCC
1 AGGGGAACT-GATACCCCC
107808 TGGGGTTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.06
20 15 0.94
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACTGATACCCCCAC
Found at i:114080 original size:62 final size:63
Alignment explanation
Indices: 113919--114081 Score: 242
Period size: 64 Copynumber: 2.6 Consensus size: 63
113909 CAGCTTTTAG
* *
113919 AGTCAATTTCAACTTCACAGCGAAGGATATTGGACTTAACAAACAACTTTTCAGTTTCATTCAA
1 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAACAACTTTTCAGTTTCATTC-A
* *
113983 AGTCAATTTCAATTTCACAGA-GAAGGATATTGGACTCAACCAACAAC-TTTCTAGTTTCATTC-
1 AGTCAATTTCAACTTCACA-ACGAAGGATATTGGACTCAACAAACAACTTTTC-AGTTTCATTCA
114045 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
114082 GAAGCAACGC
Statistics
Matches: 91, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
61 1 0.01
62 34 0.37
63 4 0.04
64 52 0.57
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (63 bp):
AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAACAACTTTTCAGTTTCATTCA
Found at i:114512 original size:37 final size:38
Alignment explanation
Indices: 114462--114539 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
114452 TTAAAGAAAG
* *
114462 TTGTCTCCCTTGAGACAGTTTCCCTTGAAACA-AAATT
1 TTGTCTCCCTTGAGACAATTTCCCTTGAAACATAAACT
**
114499 TTGTCTCCCTTGAGACAATTTGTCTTGAAACATAAACT
1 TTGTCTCCCTTGAGACAATTTCCCTTGAAACATAAACT
114537 TTG
1 TTG
114540 AAAGCGTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 29 0.81
38 7 0.19
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (38 bp):
TTGTCTCCCTTGAGACAATTTCCCTTGAAACATAAACT
Found at i:114600 original size:36 final size:36
Alignment explanation
Indices: 114545--114740 Score: 275
Period size: 36 Copynumber: 5.4 Consensus size: 36
114535 CTTTGAAAGC
114545 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
* *
114581 GTTTCCCTTGGAACGAATTTTGTCTCTCTTGAGATA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
*
114617 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
* * **
114653 GTTTCCCTTGAAACATATTTTGTCTCACTTGAGACC
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
* * * *
114689 GTTTCTCTTGAAACAAATTTTGTCTCCCTCGAGATC
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
* *
114725 GTTTCTCATGAAACAA
1 GTTTCCCTTGAAACAA
114741 CAACCAAACT
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 146 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
Found at i:122411 original size:24 final size:24
Alignment explanation
Indices: 122320--122405 Score: 154
Period size: 24 Copynumber: 3.6 Consensus size: 24
122310 TCCTTTTCCA
*
122320 GCACCCGAGCCCTCTAGTCCTCTT
1 GCACCCGAGCCTTCTAGTCCTCTT
122344 GCACCCGAGCCTTCTAGTCCTCTT
1 GCACCCGAGCCTTCTAGTCCTCTT
*
122368 GCACCCGAGCCTTCTAGTCCTTTT
1 GCACCCGAGCCTTCTAGTCCTCTT
122392 GCACCCGAGCCTTC
1 GCACCCGAGCCTTC
122406 CGGTCCATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.13, C:0.43, G:0.17, T:0.27
Consensus pattern (24 bp):
GCACCCGAGCCTTCTAGTCCTCTT
Found at i:122868 original size:91 final size:91
Alignment explanation
Indices: 122713--122895 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
122703 ACATCCGAAG
122713 CCCTCCGATGCATTTCGCCTGCAGCGATTCGGTTCCGTGTGCAAACATCACACTCTGATATCGAA
1 CCCTCCGATGCATTTCGCCTGCAGCGATTCGGTTCCGTGTGCAAACATCACACTCTGATATCGAA
122778 CTTCTTCCGGCGAAAGGAGATATTGT
66 CTTCTTCCGGCGAAAGGAGATATTGT
122804 CCCTCCGATGCATTTCGCCTGCAGCGATTCGGTTCCGTGTGCAAACATCACACTCTGATATCGAA
1 CCCTCCGATGCATTTCGCCTGCAGCGATTCGGTTCCGTGTGCAAACATCACACTCTGATATCGAA
122869 CTTCTTCCGGCGAAAGGAGATATTGT
66 CTTCTTCCGGCGAAAGGAGATATTGT
122895 C
1 C
122896 TCGGACCCAT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (91 bp):
CCCTCCGATGCATTTCGCCTGCAGCGATTCGGTTCCGTGTGCAAACATCACACTCTGATATCGAA
CTTCTTCCGGCGAAAGGAGATATTGT
Found at i:124879 original size:31 final size:31
Alignment explanation
Indices: 124807--124872 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
124797 AGTTACGTCG
124807 GGGACCATATTGCAAACGGACTAAATGTTGA
1 GGGACCATATTGCAAACGGACTAAATGTTGA
* *
124838 GGGACCATATTGCTAACGGACTAAATGTTGG
1 GGGACCATATTGCAAACGGACTAAATGTTGA
124869 GGGA
1 GGGA
124873 TTATATTACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (31 bp):
GGGACCATATTGCAAACGGACTAAATGTTGA
Found at i:128577 original size:76 final size:75
Alignment explanation
Indices: 128467--128658 Score: 245
Period size: 72 Copynumber: 2.6 Consensus size: 75
128457 CCGTTGTACA
* *
128467 AGGGGGGAATCGGTACC-CCT-TGGGGG-ATCGGTTCCCTCCGAGCATACTAGAATTCTCGGAG-
1 AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATACTAGAAATC-CGGAGC
**
128528 CAAAACTGTTT
65 CAAAACCATTT
* * *
128539 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCCGGGGC
1 AGGGGGGAATCGGTTCCTCCTAT-GGGGGAATCGGTTCCCTCCGAGCATACTAGAAATCCGGAGC
128604 CAAAACCATTT
65 CAAAACCATTT
*
128615 A-GGGGGAATC--TTCCTCCTATGGGGGAATCGGTTCCCTCTGAGCA
1 AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCA
128659 ATCTGTAATT
Statistics
Matches: 107, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
72 39 0.36
73 13 0.12
74 1 0.01
75 18 0.17
76 36 0.34
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.23
Consensus pattern (75 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGAATCGGTTCCCTCCGAGCATACTAGAAATCCGGAGCC
AAAACCATTT
Found at i:130630 original size:20 final size:21
Alignment explanation
Indices: 130607--130646 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
130597 TTTCGAATTT
130607 TTTTTAATAAAATTA-TTGTG
1 TTTTTAATAAAATTAGTTGTG
* *
130627 TTTTTGATGAAATTAGTTGT
1 TTTTTAATAAAATTAGTTGT
130647 AACATCTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (21 bp):
TTTTTAATAAAATTAGTTGTG
Found at i:131044 original size:19 final size:20
Alignment explanation
Indices: 130998--131057 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 20
130988 TTCCCCTGTG
130998 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TC-AA
131021 GGGGGAATCGGTTCCCTC-A
1 GGGGGAATCGGTTCCCTCAA
* *
131040 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
131058 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.22
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAA
Found at i:134888 original size:22 final size:21
Alignment explanation
Indices: 134846--134885 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
134836 GAGTTTGTTT
*
134846 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
134867 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
134886 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:136911 original size:54 final size:55
Alignment explanation
Indices: 136826--136949 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 55
136816 GTACCCCCTT
* * **
136826 GGGGGGGATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG-CAAAACTGTTTA
1 GGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCCAAAACCATTTA
* *
136880 GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGGCCAAAACCATTTA
1 GGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCCAAAACCATTTA
136935 -GGGGGAATCGGTTCC
1 GGGGGGAATCGGTTCC
136950 TCCTATGGGG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 53 0.84
55 10 0.16
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (55 bp):
GGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCCAAAACCATTTA
Found at i:140739 original size:22 final size:21
Alignment explanation
Indices: 140685--140739 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 21
140675 ATAATTAAAC
*
140685 TATAATGATCAAATTTTATTTT
1 TATAAT-ATAAAATTTTATTTT
*
140707 CACTTAATATAAAATTTTTATTTT
1 TA--TAATATAAAA-TTTTATTTT
140731 TATAATATA
1 TATAATATA
140740 TAAACAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
22 8 0.30
23 5 0.19
24 14 0.52
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (21 bp):
TATAATATAAAATTTTATTTT
Found at i:141139 original size:15 final size:15
Alignment explanation
Indices: 141084--141141 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
141074 TTCTAGAAAT
141084 ATAATTC-ATTTTCC
1 ATAATTCAATTTTCC
*
141098 ATAATTCAATTTTTC
1 ATAATTCAATTTTCC
*
141113 AGTAATT-TATTTTCC
1 A-TAATTCAATTTTCC
141128 ATAATTCAATTTTC
1 ATAATTCAATTTTC
141142 AAAAAATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.32
15 20 0.54
16 5 0.14
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.52
Consensus pattern (15 bp):
ATAATTCAATTTTCC
Found at i:148978 original size:34 final size:34
Alignment explanation
Indices: 148940--149008 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
148930 TATAAAACTT
148940 TAGAATTATAAGATAAAATTATTTTGTGATCTCC
1 TAGAATTATAAGATAAAATTATTTTGTGATCTCC
* *
148974 TAGAATTATGAGATAAAATTATTTTGTGATTTCC
1 TAGAATTATAAGATAAAATTATTTTGTGATCTCC
149008 T
1 T
149009 TGATTATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.43
Consensus pattern (34 bp):
TAGAATTATAAGATAAAATTATTTTGTGATCTCC
Found at i:152717 original size:18 final size:19
Alignment explanation
Indices: 152678--152720 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
152668 TTGATTCACG
*
152678 GAATATAAGATTACCAGTGA
1 GAATAAAAGATTACCAG-GA
152698 GAATAAAAGATTACCA-GA
1 GAATAAAAGATTACCAGGA
152716 GAATA
1 GAATA
152721 TGATTACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
20 15 0.68
ACGTcount: A:0.51, C:0.09, G:0.19, T:0.21
Consensus pattern (19 bp):
GAATAAAAGATTACCAGGA
Found at i:152943 original size:37 final size:37
Alignment explanation
Indices: 152870--152944 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
152860 GTTGGAAAAT
*
152870 ATTTATATATTTTCTTTAAAAAAATTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAAATTAAAATCATAAA
*
152907 ATTTATATAATTTT-TTTAATAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAAATT-AAAATCATAAA
152944 A
1 A
152945 AGGTTTAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 25 0.74
38 9 0.26
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAAATTAAAATCATAAA
Found at i:155786 original size:17 final size:17
Alignment explanation
Indices: 155764--155799 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
155754 CTGGAAATTG
155764 TGGATCCGAACCCGACC
1 TGGATCCGAACCCGACC
*
155781 TGGATCCGAACTCGACC
1 TGGATCCGAACCCGACC
155798 TG
1 TG
155800 AGAACGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (17 bp):
TGGATCCGAACCCGACC
Found at i:155961 original size:16 final size:16
Alignment explanation
Indices: 155911--155965 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
155901 GGTATTTCCC
*
155911 GACCTATTTTCAACCT
1 GACCTGTTTTCAACCT
*
155927 GACATGTTTTCAACCT
1 GACCTGTTTTCAACCT
* *
155943 GACCTGTTTTTAACAT
1 GACCTGTTTTCAACCT
155959 GACCTGT
1 GACCTGT
155966 AAATGATCCG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:156243 original size:14 final size:14
Alignment explanation
Indices: 156221--156267 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
156211 TGAAAAGGAA
*
156221 AATTAATATAGTTT
1 AATTTATATAGTTT
156235 AATTTATAT-G---
1 AATTTATATAGTTT
156245 AA-TTATATAGTTT
1 AATTTATATAGTTT
156258 AATTTATATA
1 AATTTATATA
156268 AAGAAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 6 0.22
10 3 0.11
13 3 0.11
14 15 0.56
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:156253 original size:23 final size:24
Alignment explanation
Indices: 156221--156266 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
156211 TGAAAAGGAA
156221 AATTAATATAGTTTAATTTATATG
1 AATTAATATAGTTTAATTTATATG
156245 AATT-ATATAGTTTAATTTATAT
1 AATTAATATAGTTTAATTTATAT
156267 AAAGAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (24 bp):
AATTAATATAGTTTAATTTATATG
Found at i:156882 original size:24 final size:24
Alignment explanation
Indices: 156832--156884 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
156822 TACAAGGCAA
* * *
156832 CAACAGGCAGCAAGCAGCATCAAG
1 CAACAGGCAGCAAGAAACAACAAG
* *
156856 CAACAGGCAGCAGGAAACAACATG
1 CAACAGGCAGCAAGAAACAACAAG
156880 CAACA
1 CAACA
156885 ATAGGAAACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.28, G:0.23, T:0.04
Consensus pattern (24 bp):
CAACAGGCAGCAAGAAACAACAAG
Found at i:157851 original size:3 final size:3
Alignment explanation
Indices: 157843--157871 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
157833 CTTTGGACAT
157843 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
157872 ACACAAGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:159607 original size:102 final size:102
Alignment explanation
Indices: 159431--159655 Score: 387
Period size: 102 Copynumber: 2.2 Consensus size: 102
159421 AACAGTATCA
* *
159431 ACAAATTAAACAGTTTATTTAAACTGTAAATAAAGGCAGCTAACACCCTTATAAAAGCAATTCGA
1 ACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAAAAGCAATTCGA
* * *
159496 ATGAACAACCAACAACACAAACAAATTAATAGTAGCT
66 ATGAACAACCAACAACACAAACAAATCAACAATAGCT
* *
159533 ACAAATTAAACAATTTATTTATACTGTAAATAAAGGTAGCTAACAACCTTATAAAAGCAATTCGA
1 ACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAAAAGCAATTCGA
159598 ATGAACAACCAACAACACAAACAAATCAACAATAGCT
66 ATGAACAACCAACAACACAAACAAATCAACAATAGCT
159635 ACAAATTAAACAATTTATTTA
1 ACAAATTAAACAATTTATTTA
159656 CCTATTTCAG
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 116 1.00
ACGTcount: A:0.50, C:0.18, G:0.08, T:0.24
Consensus pattern (102 bp):
ACAAATTAAACAATTTATTTAAACTGTAAATAAAGGCAGCTAACAACCTTATAAAAGCAATTCGA
ATGAACAACCAACAACACAAACAAATCAACAATAGCT
Found at i:159934 original size:6 final size:6
Alignment explanation
Indices: 159919--160044 Score: 62
Period size: 6 Copynumber: 21.3 Consensus size: 6
159909 TAGGTTTGAA
** * ** *
159919 TTTGGG -TTGGG TTTGGG TTTAAG TTAGGG TTTGGG -TTCAG TTAGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
* * * * ** * *
159965 GTTAGG TTTGAG TTTGGG TTTTGGG TTAGTA TTAGGG TTAGGG -TTGGG
1 TTTGGG TTTGGG TTTGGG -TTTGGG TTTGGG TTTGGG TTTGGG TTTGGG
* *
160013 TTAAGGG -TTAGG TTTGGG TTTGGG TTTGGG TT
1 TT-TGGG TTTGGG TTTGGG TTTGGG TTTGGG TT
160045 CAAGTTCAGG
Statistics
Matches: 86, Mismatches: 28, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
5 14 0.16
6 63 0.73
7 9 0.10
ACGTcount: A:0.11, C:0.01, G:0.44, T:0.44
Consensus pattern (6 bp):
TTTGGG
Found at i:159950 original size:18 final size:18
Alignment explanation
Indices: 159927--160075 Score: 83
Period size: 18 Copynumber: 8.3 Consensus size: 18
159917 AATTTGGGTT
159927 GGGTTTGGGTTTAAGTTA
1 GGGTTTGGGTTTAAGTTA
*
159945 GGGTTTGGG-TTCAGTTA
1 GGGTTTGGGTTTAAGTTA
* * * *
159962 GGGGTTAGGTTTGAGTTT
1 GGGTTTGGGTTTAAGTTA
159980 GGGTTTTGGG-TT-AGTATTA
1 GGG-TTTGGGTTTAAG--TTA
* **
159999 GGGTTAGGG-TTGGGTTAA
1 GGGTTTGGGTTTAAGTT-A
* ** *
160017 GGG-TTAGGTTTGGGTTT
1 GGGTTTGGGTTTAAGTTA
*
160034 GGGTTTGGGTTCAAGTTCA
1 GGGTTTGGGTTTAAGTT-A
* *
160053 GGGTTTAGGTTCAAGTTA
1 GGGTTTGGGTTTAAGTTA
160071 GGGTT
1 GGGTT
160076 AGTGACAAAA
Statistics
Matches: 103, Mismatches: 19, Indels: 18
0.74 0.14 0.13
Matches are distributed among these distances:
17 24 0.23
18 53 0.51
19 26 0.25
ACGTcount: A:0.14, C:0.03, G:0.42, T:0.42
Consensus pattern (18 bp):
GGGTTTGGGTTTAAGTTA
Found at i:159979 original size:29 final size:29
Alignment explanation
Indices: 159908--159984 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
159898 GGGTTTGAAT
* ** * *
159908 TTAGGTTTGAATTTGGGTTGGGTTTGGGT
1 TTAGGTTTGAGTTTGGGTTCAGTTAGGGG
* * *
159937 TTAAGTTAGGGTTTGGGTTCAGTTAGGGG
1 TTAGGTTTGAGTTTGGGTTCAGTTAGGGG
159966 TTAGGTTTGAGTTTGGGTT
1 TTAGGTTTGAGTTTGGGTT
159985 TTGGGTTAGT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.13, C:0.01, G:0.40, T:0.45
Consensus pattern (29 bp):
TTAGGTTTGAGTTTGGGTTCAGTTAGGGG
Found at i:160009 original size:54 final size:52
Alignment explanation
Indices: 159925--160077 Score: 168
Period size: 54 Copynumber: 2.8 Consensus size: 52
159915 TGAATTTGGG
*
159925 TTGGGTTTGGGTTTAAG-TTAGGGTTTGGGTTCAGTTAGGGGTTAGGTTTGAGT
1 TTGGGTTTGGG-TTAAGTTTAGGGTTAGGGTTCAGTTA-GGGTTAGGTTTGAGT
** *
159978 TTGGGTTTTGGGTT-AGTATTAGGGTTAGGGTTGGGTTAAGGGTTAGGTTTGGGT
1 TTGGG-TTTGGGTTAAGT-TTAGGGTTAGGGTTCAGTT-AGGGTTAGGTTTGAGT
*
160032 TTGGGTTTGGGTTCAAGTTCAGGGTTTA-GGTTCAAGTTAGGGTTAG
1 TTGGGTTTGGGTT-AAGTTTAGGG-TTAGGGTTC-AGTTAGGGTTAG
160078 TGACAAAAGA
Statistics
Matches: 85, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
52 2 0.02
53 15 0.18
54 58 0.68
55 10 0.12
ACGTcount: A:0.14, C:0.03, G:0.41, T:0.42
Consensus pattern (52 bp):
TTGGGTTTGGGTTAAGTTTAGGGTTAGGGTTCAGTTAGGGTTAGGTTTGAGT
Found at i:160058 original size:19 final size:18
Alignment explanation
Indices: 160034--160075 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
160024 GTTTGGGTTT
*
160034 GGGTTTGGGTTCAAGTTCA
1 GGGTTTAGGTTCAAGTT-A
160053 GGGTTTAGGTTCAAGTTA
1 GGGTTTAGGTTCAAGTTA
160071 GGGTT
1 GGGTT
160076 AGTGACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.17, C:0.07, G:0.38, T:0.38
Consensus pattern (18 bp):
GGGTTTAGGTTCAAGTTA
Found at i:160790 original size:16 final size:15
Alignment explanation
Indices: 160750--160827 Score: 64
Period size: 13 Copynumber: 5.6 Consensus size: 15
160740 TAATTTTTTA
160750 AATTAACTATT-T-AT
1 AATTAA-TATTATAAT
160764 AATTAATATTATAAT
1 AATTAATATTATAAT
*
160779 AATT-ATA-TATTAT
1 AATTAATATTATAAT
160792 AATTAATA-T-TAAT
1 AATTAATATTATAAT
*
160805 -ATTAA-ATTATATT
1 AATTAATATTATAAT
160818 AATATAATAT
1 AAT-TAATAT
160828 AATATAGTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
11 1 0.02
12 6 0.11
13 19 0.36
14 16 0.30
15 9 0.17
16 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTAATATTATAAT
Found at i:160816 original size:10 final size:11
Alignment explanation
Indices: 160780--160832 Score: 56
Period size: 10 Copynumber: 4.7 Consensus size: 11
160770 TATTATAATA
160780 ATTATATATTAT
1 ATTA-ATATTAT
160792 AATTAATATTAAT
1 -ATTAATATT-AT
160805 ATTAA-ATTAT
1 ATTAATATTAT
*
160815 ATTAATATAAT
1 ATTAATATTAT
160826 A-TAATAT
1 ATTAATAT
160833 AGTTTATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
10 13 0.35
11 8 0.22
12 10 0.27
13 6 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTAATATTAT
Found at i:160893 original size:31 final size:29
Alignment explanation
Indices: 160760--161038 Score: 135
Period size: 31 Copynumber: 9.0 Consensus size: 29
160750 AATTAACTAT
*
160760 TTAT-AATTAATATT-ATAATAATTATATA-
1 TTATAAATTAATATTAAT-ATAA-AATATAG
*
160788 TTAT-AATTAATATTAATATTAAATTATA-
1 TTATAAATTAATATTAATA-TAAAATATAG
* ** *
160816 TTAATATAATATAATA-TAGTTTATAATTTATAA
1 TT-ATA-AAT-TAATATTA--ATATAAAATATAG
160849 TT-TATAATTAATATTAATATAAAATATAG
1 TTATA-AATTAATATTAATATAAAATATAG
*
160878 TATATAACATTAATATTAATATAAATTATATG
1 T-TATAA-ATTAATATTAATATAAAATATA-G
*
160910 TTATAAATTATATAGTATAATTTATAAACTATAG
1 TTATAAATTA-ATA-T-TAA--TATAAAATATAG
160944 TTAATATAATTAATATTAATAT--AATATAG
1 TT-ATA-AATTAATATTAATATAAAATATAG
*
160973 TTTATAAACTATATACTATATTAATATAAATTATAG
1 -TTAT-AA--AT-TA--ATATTAATATAAAATATAG
* * *
161009 TTAAGATAATTAACATTAATATAAACTATA
1 TT-ATA-AATTAATATTAATATAAAATATA
161039 TAGTACATTA
Statistics
Matches: 204, Mismatches: 15, Indels: 61
0.73 0.05 0.22
Matches are distributed among these distances:
28 21 0.10
29 26 0.13
30 14 0.07
31 65 0.32
32 18 0.09
33 12 0.06
34 16 0.08
35 19 0.09
36 13 0.06
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (29 bp):
TTATAAATTAATATTAATATAAAATATAG
Found at i:160916 original size:14 final size:14
Alignment explanation
Indices: 160779--160935 Score: 61
Period size: 14 Copynumber: 10.5 Consensus size: 14
160769 ATATTATAAT
*
160779 AATTATATATTAT-
1 AATTATATAGTATA
*
160792 AATTAATATTAATATTA
1 AATT-ATA-TAGTA-TA
*
160809 AATTATATTAATATA
1 AATTATA-TAGTATA
* *
160824 ATATAATATAGTTTA
1 A-ATTATATAGTATA
* *
160839 TAATT-TATAATTTA
1 -AATTATATAGTATA
*
160853 TAATTAATATTAATATA
1 -AATT-ATA-TAGTATA
*
160870 AAATATAGTA-TATA
1 AATTATA-TAGTATA
*
160884 ACATTAATATTAATATA
1 A-ATT-ATA-TAGTATA
160901 AATTATAT-GTTATA
1 AATTATATAG-TATA
160915 AATTATATAGTATA
1 AATTATATAGTATA
*
160929 ATTTATA
1 AATTATA
160936 AACTATAGTT
Statistics
Matches: 117, Mismatches: 13, Indels: 27
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.03
14 44 0.38
15 25 0.21
16 29 0.25
17 15 0.13
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (14 bp):
AATTATATAGTATA
Found at i:160972 original size:29 final size:30
Alignment explanation
Indices: 160939--161032 Score: 91
Period size: 34 Copynumber: 3.0 Consensus size: 30
160929 ATTTATAAAC
160939 TATAGTTAATATAATTAATATTAATATAA-
1 TATAGTTAATATAATTAATATTAATATAAT
* *
160968 TATAGTTTATAAACTATATACTATATTAATATAAAT
1 TATAGTTAATATA--AT-TA--ATATTAATAT-AAT
* *
161004 TATAGTTAAGATAATTAACATTAATATAA
1 TATAGTTAATATAATTAATATTAATATAA
161033 ACTATATAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
29 11 0.21
30 2 0.04
31 11 0.21
32 2 0.04
33 2 0.04
34 12 0.23
35 2 0.04
36 10 0.19
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (30 bp):
TATAGTTAATATAATTAATATTAATATAAT
Found at i:161062 original size:20 final size:21
Alignment explanation
Indices: 161021--161062 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
161011 AAGATAATTA
161021 ACATTAATATAAACTATATAGT
1 ACATTAATATAAAC-ATATAGT
161043 ACATTAATATAAAC-TATAGT
1 ACATTAATATAAACATATAGT
161063 TTATAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
22 14 0.70
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (21 bp):
ACATTAATATAAACATATAGT
Found at i:161206 original size:24 final size:24
Alignment explanation
Indices: 161179--161230 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
161169 ATAGATTGTA
*
161179 TATATATATATA-TATACTATAGGT
1 TATATATATACACTATAC-ATAGGT
*
161203 TATATATATACACTATACATAGTT
1 TATATATATACACTATACATAGGT
161227 TATA
1 TATA
161231 CATACATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (24 bp):
TATATATATACACTATACATAGGT
Found at i:161230 original size:22 final size:23
Alignment explanation
Indices: 161179--161244 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 23
161169 ATAGATTGTA
*
161179 TATATATATATATATACTATAGGT
1 TATATATATACATATAC-ATAGGT
161203 TATATATATACACTATACATA-GT
1 TATATATATACA-TATACATAGGT
*
161226 T-TATACATACATGATACAT
1 TATATATATACAT-ATACAT
161245 GTACTATAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.03
22 15 0.39
23 3 0.08
24 14 0.37
25 5 0.13
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (23 bp):
TATATATATACATATACATAGGT
Found at i:161351 original size:20 final size:20
Alignment explanation
Indices: 161322--161376 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
161312 ATTGTTTATG
*
161322 TTTAGAGTTTAGGGTTAGGT
1 TTTAGAGTTTAGGGTTAGGA
*
161342 TTTAGGGTTTAGGG-TAGGA
1 TTTAGAGTTTAGGGTTAGGA
*
161361 TTTAAAGTTTAGGGTT
1 TTTAGAGTTTAGGGTT
161377 TTTTATAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.44
Consensus pattern (20 bp):
TTTAGAGTTTAGGGTTAGGA
Found at i:163795 original size:19 final size:20
Alignment explanation
Indices: 163763--163800 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
163753 TTCTCTCATC
163763 TCTTCTTCCTTCTT-TCTTA
1 TCTTCTTCCTTCTTCTCTTA
163782 TCTTCTTCAC-TCTTCTCTT
1 TCTTCTTC-CTTCTTCTCTT
163801 CTTCCAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.05, C:0.34, G:0.00, T:0.61
Consensus pattern (20 bp):
TCTTCTTCCTTCTTCTCTTA
Found at i:165036 original size:23 final size:23
Alignment explanation
Indices: 164992--165036 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
164982 TATTATATAT
*
164992 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
165015 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
165037 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:169704 original size:20 final size:20
Alignment explanation
Indices: 169679--169733 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
169669 TTTTGGTGCA
*
169679 GAGGGAATCGATCCCCCCTT
1 GAGGGAACCGATCCCCCCTT
*
169699 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGA-TCCCCCCTT
169720 GAAGGGGAACCGAT
1 G-A-GGGAACCGAT
169734 TTCCCCCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 10 0.33
21 9 0.30
22 2 0.07
23 9 0.30
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (20 bp):
GAGGGAACCGATCCCCCCTT
Found at i:169731 original size:23 final size:21
Alignment explanation
Indices: 169679--169740 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 21
169669 TTTTGGTGCA
*
169679 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
169699 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
*
169720 GAAGGGGAACCGATTTCCCCC
1 G-A-GGGAACCGATTCCCCCC
169741 ACAGGGGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.29
21 9 0.26
22 1 0.03
23 15 0.43
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:169760 original size:21 final size:21
Alignment explanation
Indices: 169722--169761 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
169712 CCCCCTTTGA
**
169722 AGGGGAACCGATTTCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
169743 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
169762 TGGGGTTCTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:172055 original size:34 final size:34
Alignment explanation
Indices: 172017--172101 Score: 170
Period size: 34 Copynumber: 2.5 Consensus size: 34
172007 AACAAAAAGG
172017 GGGAGAAGTGTTAAAGTGTTTTTAAATGATAAAT
1 GGGAGAAGTGTTAAAGTGTTTTTAAATGATAAAT
172051 GGGAGAAGTGTTAAAGTGTTTTTAAATGATAAAT
1 GGGAGAAGTGTTAAAGTGTTTTTAAATGATAAAT
172085 GGGAGAAGTGTTAAAGT
1 GGGAGAAGTGTTAAAGT
172102 AAGGGGGAGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (34 bp):
GGGAGAAGTGTTAAAGTGTTTTTAAATGATAAAT
Found at i:172144 original size:61 final size:61
Alignment explanation
Indices: 172076--172197 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
172066 GTGTTTTTAA
172076 ATGATAAATGGGAGAAGTGTTAAAGTAAGGGGGAGTAATTTCAAAACTTGATTTCAAAATC
1 ATGATAAATGGGAGAAGTGTTAAAGTAAGGGGGAGTAATTTCAAAACTTGATTTCAAAATC
*
172137 ATGATAAATGGGAGAAGTGTTCAAGTAAGGGGGAGTAATTTCAAAACTTGATTTCAAAATC
1 ATGATAAATGGGAGAAGTGTTAAAGTAAGGGGGAGTAATTTCAAAACTTGATTTCAAAATC
172198 TTAAAATTAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (61 bp):
ATGATAAATGGGAGAAGTGTTAAAGTAAGGGGGAGTAATTTCAAAACTTGATTTCAAAATC
Found at i:173337 original size:35 final size:36
Alignment explanation
Indices: 173297--173367 Score: 90
Period size: 37 Copynumber: 2.0 Consensus size: 36
173287 TATACTATAC
* *
173297 ATAGTTT-ATACATATATGTACTATAAGTTACATAT
1 ATAGTTTAATACATACATATACTATAAGTTACATAT
**
173332 ATAGTTTACATGTATACATATACTATAAGTTACATA
1 ATAGTTTA-ATACATACATATACTATAAGTTACATA
173368 GATTAACTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 7 0.23
37 23 0.77
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (36 bp):
ATAGTTTAATACATACATATACTATAAGTTACATAT
Found at i:173591 original size:2 final size:2
Alignment explanation
Indices: 173584--173752 Score: 113
Period size: 2 Copynumber: 86.0 Consensus size: 2
173574 AGTTTCTTTA
*
173584 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
173625 AT -T ACT -T AT AT TT GT -T AT AC AT AC AT AT AT AT ACT AT AT -T
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* * * *
173665 A- AT AT AA AT -T AT A- AC AT AT AA ACT AT AT AT -T TT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T
* * *
173705 TT AT AC AT AT AT AGT TT AT AT AT AT AT AT AT AT AT AT AT AT ACT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
173749 AT AT
1 AT AT
173753 TAATATAAAT
Statistics
Matches: 133, Mismatches: 19, Indels: 30
0.73 0.10 0.16
Matches are distributed among these distances:
1 9 0.07
2 116 0.87
3 8 0.06
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:173758 original size:15 final size:15
Alignment explanation
Indices: 173651--173759 Score: 50
Period size: 15 Copynumber: 7.3 Consensus size: 15
173641 ATACATACAT
173651 ATATATACTATATTA
1 ATATATACTATATTA
* *
173666 ATATA-AAT-TATAA
1 ATATATACTATATTA
* *
173679 CATATAAACTATATATT
1 -ATATATACTATAT-TA
* * *
173696 TTATATAGTTTA-TA
1 ATATATACTATATTA
* *
173710 CATATATAGTTTA-T-
1 -ATATATACTATATTA
173724 ATATATA-TATATATA
1 ATATATACTATAT-TA
173739 TATATATACTATATTA
1 -ATATATACTATATTA
173755 ATATA
1 ATATA
173760 AATAATATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
12 3 0.04
13 11 0.15
14 9 0.12
15 24 0.33
16 20 0.28
17 5 0.07
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATATACTATATTA
Found at i:173759 original size:8 final size:9
Alignment explanation
Indices: 173582--173767 Score: 75
Period size: 9 Copynumber: 20.7 Consensus size: 9
173572 AGAGTTTCTT
173582 TAATATATA
1 TAATATATA
173591 T-ATATATA
1 TAATATATA
173599 T-ATATATA
1 TAATATATA
173607 TATATATATA
1 TA-ATATATA
**
173617 TTCTATATA
1 TAATATATA
* *
173626 TTACTTATATT
1 -TA-ATATATA
** *
173637 TGTTATACA
1 TAATATATA
173646 TACATATATA
1 TA-ATATATA
*
173656 TACTATAT-
1 TAATATATA
*
173664 TAATATAAA
1 TAATATATA
* *
173673 TTATAACATA
1 TAAT-ATATA
173683 TAA-ACTATA
1 TAATA-TATA
* *
173692 TATTTTATA
1 TAATATATA
*
173701 TAGT-T-TA
1 TAATATATA
173708 TACATATATA
1 TA-ATATATA
*
173718 GT-TTATATA
1 -TAATATATA
173727 T-ATATATA
1 TAATATATA
173735 TATATATATA
1 TA-ATATATA
*
173745 TACTATAT-
1 TAATATATA
*
173753 TAATATAAA
1 TAATATATA
173762 TAATAT
1 TAATAT
173768 TTTATAAACT
Statistics
Matches: 133, Mismatches: 28, Indels: 32
0.69 0.15 0.17
Matches are distributed among these distances:
7 4 0.03
8 39 0.29
9 51 0.38
10 33 0.25
11 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (9 bp):
TAATATATA
Found at i:173790 original size:18 final size:18
Alignment explanation
Indices: 173767--173809 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
173757 ATAAATAATA
173767 TTTTATAAACTATATACT
1 TTTTATAAACTATATACT
***
173785 TTTTATAGTTTATATACT
1 TTTTATAAACTATATACT
173803 TTTTATA
1 TTTTATA
173810 GTTTATACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTTATAAACTATATACT
Found at i:173810 original size:18 final size:18
Alignment explanation
Indices: 173777--173816 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
173767 TTTTATAAAC
173777 TATATACTTTTTATAGTT
1 TATATACTTTTTATAGTT
173795 TATATACTTTTTATAGTT
1 TATATACTTTTTATAGTT
173813 TATA
1 TATA
173817 CATATATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATACTTTTTATAGTT
Found at i:173826 original size:15 final size:14
Alignment explanation
Indices: 173806--173991 Score: 72
Period size: 13 Copynumber: 13.1 Consensus size: 14
173796 ATATACTTTT
173806 TATAGTTTATACATA
1 TATAGTTTATA-ATA
173821 TATAGTTTAT-ATA
1 TATAGTTTATAATA
* *
173834 CATAGTTTAT-ATG
1 TATAGTTTATAATA
*
173847 TATAGTTCACATAA-A
1 TATAGTT--TATAATA
* *
173862 CATAATTTAT-ATA
1 TATAGTTTATAATA
173875 TATAGCTTATAATAATTA
1 TATAG-TT-T-ATAA-TA
173893 TATAGTTTATAATA
1 TATAGTTTATAATA
* *
173907 TA-A--ATATAATT
1 TATAGTTTATAATA
*
173918 TATAATTT-T-ATA
1 TATAGTTTATAATA
*
173930 TA-ATGTTGACATAA-A
1 TATA-GTT--TATAATA
*
173945 TATAATTTAT-ATA
1 TATAGTTTATAATA
173958 TATAGTTTATAATAATTA
1 TATAG-TT-T-ATAA-TA
173976 TATAGTTTATAATA
1 TATAGTTTATAATA
173990 TA
1 TA
173992 AATATAGTTT
Statistics
Matches: 128, Mismatches: 19, Indels: 49
0.65 0.10 0.25
Matches are distributed among these distances:
11 9 0.07
12 9 0.07
13 35 0.27
14 13 0.10
15 33 0.26
16 9 0.07
17 6 0.05
18 14 0.11
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.47
Consensus pattern (14 bp):
TATAGTTTATAATA
Found at i:173832 original size:89 final size:89
Alignment explanation
Indices: 173640--173833 Score: 246
Period size: 89 Copynumber: 2.1 Consensus size: 89
173630 TTATATTTGT
* * *
173640 TATACATACATATATATACTATATTAATATAAATTATAACATATAAACTATATATTTTATATAGT
1 TATATATATATATATATACTATATTAATATAAATAATAACATATAAACTATATATTTTATATAGT
*
173705 TTATACATATATAGTTTATATATA
66 TTATACATATATAGTTTATACATA
***
173729 TATATATATATATATATACTATATTAATATAAATAATATTTTATAAACTATATACTTTT-TATAG
1 TATATATATATATATATACTATATTAATATAAATAATAACATATAAACTATATA-TTTTATATAG
* *
173793 TTTATATACTTTTTATAGTTTATACATA
65 -TT-TATAC-ATATATAGTTTATACATA
*
173821 TATAGTTTATATA
1 TATA-TATATATA
173834 CATAGTTTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
89 53 0.59
90 6 0.07
91 5 0.06
92 19 0.21
93 7 0.08
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (89 bp):
TATATATATATATATATACTATATTAATATAAATAATAACATATAAACTATATATTTTATATAGT
TTATACATATATAGTTTATACATA
Found at i:173913 original size:18 final size:18
Alignment explanation
Indices: 173869--174027 Score: 94
Period size: 18 Copynumber: 9.5 Consensus size: 18
173859 AAACATAATT
*
173869 TATATATATAGCTTATAA
1 TATATATATAGTTTATAA
173887 TA-ATTATATAGTTTATAA
1 TATA-TATATAGTTTATAA
* *
173905 TATAAATATAATTTATAA
1 TATATATATAGTTTATAA
* * * *
173923 T-TTTATATAATGT-TGA
1 TATATATATAGTTTATAA
* * *
173939 CATA-A-ATA--TAAT-T
1 TATATATATAGTTTATAA
173952 TATATATATAGTTTATAA
1 TATATATATAGTTTATAA
173970 TA-ATTATATAGTTTATAA
1 TATA-TATATAGTTTATAA
*
173988 TATAAATATAGTTTAT-A
1 TATATATATAGTTTATAA
*
174005 TA-ATTTATA--TTAT-A
1 TATATATATAGTTTATAA
174019 TATATATAT
1 TATATATAT
174028 TATATTTTTT
Statistics
Matches: 110, Mismatches: 19, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
13 3 0.03
14 9 0.08
15 11 0.10
16 8 0.07
17 18 0.16
18 59 0.54
19 2 0.02
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (18 bp):
TATATATATAGTTTATAA
Found at i:173959 original size:83 final size:84
Alignment explanation
Indices: 173855--174014 Score: 277
Period size: 83 Copynumber: 1.9 Consensus size: 84
173845 TGTATAGTTC
173855 ACATAAACATAATTTATATATATAGCTTATAATAATTATATAGTTTATAATATAAATATAATTTA
1 ACATAAACATAATTTATATATATAGCTTATAATAATTATATAGTTTATAATATAAATATAATTTA
*
173920 TA-ATTTTATATAATGTTG
66 TATAATTTATATAATGTTG
* * *
173938 ACATAAATATAATTTATATATATAGTTTATAATAATTATATAGTTTATAATATAAATATAGTTTA
1 ACATAAACATAATTTATATATATAGCTTATAATAATTATATAGTTTATAATATAAATATAATTTA
174003 TATAATTTATAT
66 TATAATTTATAT
174015 TATATATATA
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
83 64 0.89
84 8 0.11
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (84 bp):
ACATAAACATAATTTATATATATAGCTTATAATAATTATATAGTTTATAATATAAATATAATTTA
TATAATTTATATAATGTTG
Found at i:173968 original size:9 final size:9
Alignment explanation
Indices: 173956--174014 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
173946 ATAATTTATA
173956 TATATAGTT
1 TATATAGTT
*
173965 TATAATA-AT
1 TAT-ATAGTT
173974 TATATAGTT
1 TATATAGTT
*
173983 TATAATA-TA
1 TAT-ATAGTT
*
173992 AATATAGTT
1 TATATAGTT
*
174001 TATATAATT
1 TATATAGTT
174010 TATAT
1 TATAT
174015 TATATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
8 6 0.15
9 27 0.69
10 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (9 bp):
TATATAGTT
Done.