Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008101.1 Hibiscus syriacus cultivar Beakdansim tig00110631_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79784

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
647--896
35
7.3
33
76
17
185
44
5
6
44
1.51
647--878
69
3.3
66
79
17
222
46
5
5
43
1.49
1150--1201
19
2.8
18
74
11
52
40
28
21
9
1.84
2501--2543
17
2.5
18
85
7
54
9
4
6
79
1.06
2505--2579
29
2.5
30
81
16
84
10
5
8
76
1.16
11881--11918
17
2.2
17
90
0
58
50
0
0
50
1.00
14325--14400
31
2.5
31
80
0
89
34
19
17
28
1.94
27159--27352
100
1.9
100
80
2
219
19
20
15
44
1.86
28204--28339
64
2.0
64
86
8
182
24
12
16
47
1.81
35259--35383
60
2.1
60
89
3
189
28
21
16
32
1.95
36289--36436
56
2.6
56
83
2
181
39
12
14
33
1.84
36289--36463
56
3.1
56
81
4
158
40
13
13
32
1.83
37224--37299
40
1.9
40
100
0
152
19
42
14
23
1.88
52060--52168
53
2.1
53
100
0
218
31
35
12
20
1.90
53466--53500
18
1.9
18
88
0
52
0
40
5
54
1.24
55675--55714
19
2.1
19
95
0
71
32
17
5
45
1.70
56084--56138
25
2.2
25
100
0
110
23
29
29
18
1.98
58950--58983
9
3.9
9
84
7
52
61
2
0
35
1.11
58946--58984
17
2.4
17
95
4
71
61
5
0
33
1.18
59037--59065
10
2.9
10
100
0
58
41
0
37
20
1.53
59898--60094
38
5.2
37
77
13
147
44
3
7
45
1.46
59899--60041
72
2.0
72
83
8
184
44
2
8
44
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59927--60126
39
5.3
38
81
9
171
45
3
7
45
1.46
60161--60190
11
2.8
11
95
5
53
26
0
0
73
0.84
61678--61743
27
2.6
27
79
15
79
45
4
0
50
1.22
61663--61743
25
3.3
26
76
16
82
44
3
1
50
1.27
61874--61945
31
2.4
31
85
2
101
48
18
6
26
1.73

Tables:   1

The End!