genome.fa.s8102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008102.1 Hibiscus syriacus cultivar Beakdansim tig00110632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143535

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217--7325	53	2.1	53	100	0	218	31	35	12	20	1.90
8626--8660	18	1.9	18	88	0	52	0	40	5	54	1.24
10828--10867	19	2.1	19	95	0	71	32	17	5	45	1.70
11238--11292	25	2.2	25	100	0	110	23	29	29	18	1.98
14103--14136	9	3.9	9	84	7	52	61	2	0	35	1.11
14099--14137	17	2.4	17	95	4	71	61	5	0	33	1.18
14190--14218	10	2.9	10	100	0	58	41	0	37	20	1.53
15052--15251	72	2.7	71	76	16	185	46	3	7	44	1.46
15057--15251	39	5.2	38	78	12	174	46	3	6	44	1.45
15318--15347	11	2.8	11	95	5	53	26	0	0	73	0.84
15848--16145	158	1.9	158	92	0	506	30	17	25	26	1.97
16841--16910	27	2.8	27	81	14	87	44	4	0	51	1.21
17038--17110	31	2.4	31	85	0	101	49	17	6	26	1.72
35167--35203	15	2.3	17	86	9	51	78	8	8	5	1.09
37421--37514	29	3.4	28	72	16	79	59	0	3	37	1.13
40126--40534	201	2.0	201	89	2	617	35	13	16	33	1.89
43598--43654	24	2.4	23	85	2	69	47	15	19	17	1.83
45378--45556	53	3.8	47	77	14	163	31	21	7	39	1.81
45661--45742	40	2.0	40	97	0	155	34	26	15	23	1.95
48367--48435	20	3.5	20	87	0	84	36	23	14	26	1.93
50666--50761	29	3.2	28	68	16	77	33	17	3	45	1.64
50636--50814	60	3.0	60	86	0	223	32	18	5	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50842--50915	32	2.3	32	97	0	139	35	22	2	39	1.69
51844--51957	60	1.9	59	81	1	138	34	22	3	39	1.71
54004--54039	17	2.0	19	89	10	58	16	13	5	63	1.47
54287--54565	66	4.2	66	80	5	294	33	24	14	28	1.94
54287--54565	132	2.1	132	82	4	330	33	24	14	28	1.94
57094--57213	35	3.3	36	89	5	181	43	20	5	31	1.73
57145--57205	21	3.2	21	65	29	64	42	21	4	31	1.74
57096--57240	35	4.1	36	83	11	142	41	19	6	33	1.76
61273--61306	16	2.1	17	88	5	52	44	20	0	35	1.52
61708--61824	37	3.2	37	84	8	161	44	17	5	33	1.70
61708--61817	35	3.1	35	85	8	152	44	17	4	33	1.69
66897--66986	39	2.3	39	79	7	94	41	12	20	26	1.87
68429--68566	34	4.0	34	86	9	174	36	0	0	61	1.06
68444--68580	9	15.1	9	70	13	68	32	1	0	65	1.07
69485--69859	158	2.4	158	89	2	560	27	18	6	46	1.75
71305--71439	68	2.0	68	91	0	216	45	16	17	20	1.85
71413--71505	44	2.1	44	93	0	159	53	10	15	20	1.71
80687--80742	24	2.3	24	84	0	76	12	12	19	55	1.68
81674--81705	16	2.0	16	93	0	55	12	15	25	46	1.81
81706--81827	61	2.0	61	95	0	217	24	11	20	43	1.85
81932--81974	10	4.1	10	80	11	50	9	2	20	67	1.30
81922--81968	22	2.1	22	92	0	76	8	4	21	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81897--81974	16	4.9	16	79	6	77	11	3	20	64	1.42
81897--81974	32	2.4	32	78	4	86	11	3	20	64	1.42
82622--82669	11	4.6	11	73	23	50	33	27	33	6	1.82
82621--82677	30	1.9	30	92	0	96	36	26	31	5	1.79
83437--83478	10	4.1	10	90	6	66	19	33	28	19	1.96
88562--88610	22	2.2	22	85	7	64	28	8	20	42	1.80
93456--93484	5	5.8	5	100	0	58	0	41	37	20	1.53
98334--98367	16	2.1	16	100	0	68	29	20	17	32	1.96
103510--103754	42	5.7	42	82	7	264	28	19	24	26	1.99
108423--108809	41	9.4	41	74	10	272	31	19	19	29	1.96
108423--108814	83	4.7	82	77	8	302	31	19	19	29	1.96
108451--108828	123	3.1	122	74	12	310	30	18	20	31	1.96
110676--110725	23	2.1	24	88	3	75	20	6	12	62	1.50
111126--111173	10	4.5	10	78	14	51	16	2	16	64	1.39
117073--117151	27	2.9	27	84	0	95	20	13	16	49	1.79
120422--120482	17	3.6	17	100	0	122	26	37	19	16	1.93
128351--128398	23	2.1	22	81	11	53	27	2	4	66	1.21
129056--129112	29	1.9	30	85	3	80	15	17	19	47	1.83
130202--130289	23	4.0	23	81	12	103	7	13	21	56	1.62
130240--130306	14	5.2	13	77	15	59	5	13	23	56	1.59
139621--139688	33	2.1	33	100	0	136	42	8	22	26	1.82

Tables:   1

The End!