Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1996589
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 11
Found at i:1888 original size:21 final size:21
Alignment explanation
Indices: 1864--1918 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
1854 CGTACTCCCA
1864 GAGTATCT-ATACTTCCCGTAG
1 GAGTAT-TGATACTTCCCGTAG
*
1885 GAGTATTGATACTTCTCGTAG
1 GAGTATTGATACTTCCCGTAG
1906 GAGTATTGATACT
1 GAGTATTGATACT
1919 AAGGTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (21 bp):
GAGTATTGATACTTCCCGTAG
Found at i:9844 original size:24 final size:24
Alignment explanation
Indices: 9817--9888 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
9807 CTCGTATAAA
*
9817 TTGTACTGAAGTGCCACGTAGAAT
1 TTGTACCGAAGTGCCACGTAGAAT
* *
9841 TTGTCCCGAAG-GACCGCGTAGGAA-
1 TTGTACCGAAGTG-CCACGTA-GAAT
*
9865 -TGCACCGAAGTGCCACGTAGAAT
1 TTGTACCGAAGTGCCACGTAGAAT
9888 T
1 T
9889 GCACCATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
22 3 0.08
23 15 0.41
24 16 0.43
25 3 0.08
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (24 bp):
TTGTACCGAAGTGCCACGTAGAAT
Found at i:9891 original size:23 final size:23
Alignment explanation
Indices: 9815--9893 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
9805 AGCTCGTATA
* *
9815 AATTGTACTGAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
*
9838 AATTTGTC-CCGAAG-GACCGCGTAGG
1 AA-TTG-CACCGAAGTG-CCACGTA-G
9863 AA-TGCACCGAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
9885 AATTGCACC
1 AATTGCACC
9894 ATAATGCCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
22 4 0.09
23 23 0.51
24 15 0.33
25 3 0.07
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:16172 original size:57 final size:57
Alignment explanation
Indices: 16084--16195 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
16074 TAGTCCTTAA
*
16084 CAAGTTGCTAGTAGTGGAGGCTTCAATTCTTATATGGATTTCGTCAATAACACTCAG
1 CAAGTTGCTAGTAGTGGAGGCTTCAATTCTTATATGGATTTCATCAATAACACTCAG
*
16141 CAAGTTGCTAGTAGTGGAGGCTTGAATTCTTATATGGATTTCATCAATAACACTC
1 CAAGTTGCTAGTAGTGGAGGCTTCAATTCTTATATGGATTTCATCAATAACACTC
16196 CTAAATCCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (57 bp):
CAAGTTGCTAGTAGTGGAGGCTTCAATTCTTATATGGATTTCATCAATAACACTCAG
Found at i:18762 original size:5 final size:5
Alignment explanation
Indices: 18752--18778 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
18742 GTTCGGGTTT
18752 TTCGG TTCGG TTCGG TTCGG TTCGG TT
1 TTCGG TTCGG TTCGG TTCGG TTCGG TT
18779 TTTCGGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.37, T:0.44
Consensus pattern (5 bp):
TTCGG
Found at i:19665 original size:33 final size:34
Alignment explanation
Indices: 19624--19691 Score: 129
Period size: 33 Copynumber: 2.0 Consensus size: 34
19614 AAGGCTAATA
19624 GATTCTCGACAGCTGTACATTCTATAA-TTAGTT
1 GATTCTCGACAGCTGTACATTCTATAATTTAGTT
19657 GATTCTCGACAGCTGTACATTCTATAATTTAGTT
1 GATTCTCGACAGCTGTACATTCTATAATTTAGTT
19691 G
1 G
19692 TAACAACTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 27 0.79
34 7 0.21
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (34 bp):
GATTCTCGACAGCTGTACATTCTATAATTTAGTT
Found at i:22778 original size:33 final size:34
Alignment explanation
Indices: 22741--22808 Score: 120
Period size: 33 Copynumber: 2.0 Consensus size: 34
22731 ATGGCTAATA
22741 GATTCTCGACAGCTATACATTCTATAA-TTAGTT
1 GATTCTCGACAGCTATACATTCTATAATTTAGTT
*
22774 GATTCTCGACAGCTGTACATTCTATAATTTAGTT
1 GATTCTCGACAGCTATACATTCTATAATTTAGTT
22808 G
1 G
22809 TAATAACTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 26 0.79
34 7 0.21
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (34 bp):
GATTCTCGACAGCTATACATTCTATAATTTAGTT
Found at i:23098 original size:16 final size:16
Alignment explanation
Indices: 23077--23114 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
23067 CTTTATTGAA
23077 AGGATTTAAAATTTGG
1 AGGATTTAAAATTTGG
23093 AGGATTTAAAATTTGG
1 AGGATTTAAAATTTGG
23109 AGGATT
1 AGGATT
23115 AATTTGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (16 bp):
AGGATTTAAAATTTGG
Found at i:24519 original size:45 final size:45
Alignment explanation
Indices: 24464--24799 Score: 519
Period size: 45 Copynumber: 7.5 Consensus size: 45
24454 AAATCTATGA
*
24464 ATCGGCATAAAAGGTGCCACTAATGAAAATGTATAACGGTGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
* * *
24509 ATCGACATAAAAGATGTCACTAATGAAAATGCATAACGGTGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
* * * * *
24554 ATCGGCATAAAAGATTCCACAAATGAAAATGCATAACAGTGAATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
* *
24599 ATCGACATAAAAGGTTCCACTAATGAAAATGCATAACGGTGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
*
24644 ATCGGCATAAAATGTGCCACTAATGAAAATGCATAACGGTGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
* * *
24689 ATCTGCATAAAAGGTTCCACTAATGAAAATGCATAACGATGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
*
24734 ATCGGCATAAAATGTGCCACTAATGAAAATGCATAACGGTGCATT
1 ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
*
24779 ATCGGCATCAAAGGTGCCACT
1 ATCGGCATAAAAGGTGCCACT
24800 CATGGTATTC
Statistics
Matches: 263, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 263 1.00
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.24
Consensus pattern (45 bp):
ATCGGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATT
Found at i:30629 original size:45 final size:45
Alignment explanation
Indices: 30580--30912 Score: 540
Period size: 45 Copynumber: 7.4 Consensus size: 45
30570 TCTATTAATT
*
30580 GGCATAAAAGGTGTCACTAATGAAAATGCATAACGGTGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
*
30625 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGATGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
* * * *
30670 GACATAAAATGTGTCAGTAATGAAAATGCATAACGGTGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
* * *
30715 GACATAAAAGGTACAACTAATGAAAATGCATAACGGTGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
*
30760 GGCATAAAAGGTGCCACTAATGAAAATGTATAACGGTGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
* *
30805 GGCATAAAAGGTGTCACTAATGAAAATGCATAACGATGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
* *
30850 GGCATAAACGGTCCCACTAATGAAAATGCATAACGGTGCATTATC
1 GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
30895 GGCATAAAAGGTGCCACT
1 GGCATAAAAGGTGCCACT
30913 CATGGTATTC
Statistics
Matches: 263, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 263 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (45 bp):
GGCATAAAAGGTGCCACTAATGAAAATGCATAACGGTGCATTATC
Found at i:44515 original size:16 final size:16
Alignment explanation
Indices: 44474--44516 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
44464 GGAATAAATT
44474 TATAAAAATTAAAAAA
1 TATAAAAATTAAAAAA
**
44490 -ATTATTAATTAAAAAA
1 TA-TAAAAATTAAAAAA
44506 TATAAAAATTA
1 TATAAAAATTA
44517 TATGCTAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TATAAAAATTAAAAAA
Found at i:44701 original size:7 final size:7
Alignment explanation
Indices: 44689--44720 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
44679 CCCTTTTCCC
44689 CCCAAAA
1 CCCAAAA
44696 CCCAAAA
1 CCCAAAA
*
44703 CTCAAAA
1 CCCAAAA
44710 CCCAAAA
1 CCCAAAA
44717 CCCA
1 CCCA
44721 CGTAATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.53, C:0.44, G:0.00, T:0.03
Consensus pattern (7 bp):
CCCAAAA
Found at i:47515 original size:22 final size:20
Alignment explanation
Indices: 47489--47530 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
47479 TGAACAGTAC
47489 CATGTATAAAACTTCAGTAAAA
1 CATGTATAAAAC-TCA-TAAAA
47511 CATGTATAAAACTCATAAAA
1 CATGTATAAAACTCATAAAA
47531 ATTCAAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 12 0.60
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.26
Consensus pattern (20 bp):
CATGTATAAAACTCATAAAA
Found at i:47784 original size:21 final size:20
Alignment explanation
Indices: 47704--47785 Score: 76
Period size: 21 Copynumber: 4.0 Consensus size: 20
47694 CGCAAATCAG
*
47704 TTTCCAGATTCGCAACGCGAT
1 TTTCCA-ATTCGCAATGCGAT
**
47725 TATGACAA-TCGCAATGCGAT
1 T-TTCCAATTCGCAATGCGAT
**
47745 TTTCCAATTTCGCGTTGCGAT
1 TTTCCAA-TTCGCAATGCGAT
47766 TTTCCCAATTCGCAATGCGA
1 TTT-CCAATTCGCAATGCGA
47786 ATAAGTAAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
19 4 0.08
20 12 0.25
21 25 0.52
22 7 0.15
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (20 bp):
TTTCCAATTCGCAATGCGAT
Found at i:47800 original size:20 final size:21
Alignment explanation
Indices: 47775--47826 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
47765 TTTTCCCAAT
*
47775 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
47795 TCGCAATGCAAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
47816 TCGCAATGCGA
1 TCGCAATGCGA
47827 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:47861 original size:41 final size:40
Alignment explanation
Indices: 47764--47923 Score: 101
Period size: 41 Copynumber: 3.9 Consensus size: 40
47754 TCGCGTTGCG
*
47764 ATTTTCCCAATTCGCAATGCGAATAAGTAAATCGCAATGCA
1 ATTTTCCAAATTCGCAATGCG-ATAAGTAAATCGCAATGCA
* ** * * *
47805 AATTTGGAAAATCGCAATGCGAT-ACTGACTATCGCAATGCA
1 ATTTTCCAAATTCGCAATGCGATAAGT-A-AATCGCAATGCA
* * * * ** *
47846 ATTTTCCTAATTCGCATTGCGATTTACGT-ATTCGCGTTGCG
1 ATTTTCCAAATTCGCAATGCGA--TAAGTAAATCGCAATGCA
*
47887 ATTTT-CATAATTCGCAACGCGATTAAGTAAATCGCAA
1 ATTTTCCA-AATTCGCAATGCGA-TAAGTAAATCGCAA
47924 CGCGAATTAA
Statistics
Matches: 85, Mismatches: 27, Indels: 14
0.67 0.21 0.11
Matches are distributed among these distances:
39 2 0.02
40 9 0.11
41 72 0.85
43 1 0.01
44 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (40 bp):
ATTTTCCAAATTCGCAATGCGATAAGTAAATCGCAATGCA
Found at i:47870 original size:21 final size:21
Alignment explanation
Indices: 47836--47902 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
47826 ATACTGACTA
* * *
47836 TCGCAATGCAATTTTCCTAAT
1 TCGCATTGCGATTTTCATAAT
* *
47857 TCGCATTGCGATTTACGT-AT
1 TCGCATTGCGATTTTCATAAT
*
47877 TCGCGTTGCGATTTTCATAAT
1 TCGCATTGCGATTTTCATAAT
47898 TCGCA
1 TCGCA
47903 ACGCGATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (21 bp):
TCGCATTGCGATTTTCATAAT
Found at i:47934 original size:21 final size:21
Alignment explanation
Indices: 47898--47985 Score: 117
Period size: 21 Copynumber: 4.3 Consensus size: 21
47888 TTTTCATAAT
47898 TCGCAACGCG-ATTAAGTAAA
1 TCGCAACGCGAATTAAGTAAA
47918 TCGCAACGCGAATTAAGTAAA
1 TCGCAACGCGAATTAAGTAAA
* * *
47939 TCGCAATGCGAATTAGGAAAA
1 TCGCAACGCGAATTAAGTAAA
* *
47960 TCGCAATGCGAA-TACGTAAA
1 TCGCAACGCGAATTAAGTAAA
47980 TCGCAA
1 TCGCAA
47986 TGTGAATCTT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.35
21 40 0.65
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.19
Consensus pattern (21 bp):
TCGCAACGCGAATTAAGTAAA
Found at i:47943 original size:41 final size:41
Alignment explanation
Indices: 47898--47985 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 41
47888 TTTTCATAAT
*
47898 TCGCAACGCG-ATTAAGTAAATCGCAACGCGAATTAAGTAAA
1 TCGCAACGCGAATTAAGAAAATCGCAACGCGAA-TAAGTAAA
* * * *
47939 TCGCAATGCGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAACGCGAATTAAGAAAATCGCAACGCGAATAAGTAAA
47980 TCGCAA
1 TCGCAA
47986 TGTGAATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
41 22 0.54
42 19 0.46
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.19
Consensus pattern (41 bp):
TCGCAACGCGAATTAAGAAAATCGCAACGCGAATAAGTAAA
Found at i:47984 original size:123 final size:122
Alignment explanation
Indices: 47753--47984 Score: 279
Period size: 123 Copynumber: 1.9 Consensus size: 122
47743 ATTTTCCAAT
* * * **
47753 TTCGCGTTGCGATTTTCCCAATTCGCAATGCGAATAAGTAAATCGCAATGCAAATTTGGAAAATC
1 TTCGCGTTGCGATTTTCACAATTCGCAACGCGAATAAGTAAATCGCAACGCAAATTAAGAAAATC
* ** * *
47818 GCAATGCGATACTGACTATCGCAATGCAATTTTCCTAATTCGCATTGCGATTTACGTA
66 GCAATGCGATACGGAAAATCGCAATGCAA-TTACCTAAATCGCATTGCGATTTACGTA
* * * *
47876 TTCGCGTTGCGATTTTCATAATTCGCAACGCGATTAAGTAAATCGCAACGCGAATTAAGTAAATC
1 TTCGCGTTGCGATTTTCACAATTCGCAACGCGAATAAGTAAATCGCAACGCAAATTAAGAAAATC
*
47941 GCAATGCGAATTA-GGAAAATCGCAATGCGAA-TACGTAAATCGCA
66 GCAATGCG-A-TACGGAAAATCGCAATGC-AATTACCTAAATCGCA
47985 ATGTGAATCT
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
123 74 0.81
124 13 0.14
125 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (122 bp):
TTCGCGTTGCGATTTTCACAATTCGCAACGCGAATAAGTAAATCGCAACGCAAATTAAGAAAATC
GCAATGCGATACGGAAAATCGCAATGCAATTACCTAAATCGCATTGCGATTTACGTA
Found at i:48600 original size:19 final size:18
Alignment explanation
Indices: 48559--48602 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
48549 GCAACAAGAG
**
48559 AATCGCAACGCGAAATGA
1 AATCGCAACGCGAAACAA
48577 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-CAA
48596 AATCGCA
1 AATCGCA
48603 TTGTGATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (18 bp):
AATCGCAACGCGAAACAA
Found at i:48643 original size:14 final size:14
Alignment explanation
Indices: 48620--48741 Score: 64
Period size: 14 Copynumber: 7.6 Consensus size: 14
48610 TTTCATTTCG
*
48620 CGTTGTGATTCTCT
1 CGTTGCGATTCTCT
*
48634 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
48653 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
48667 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
48686 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
48700 CGTTGCGATAGTCATTTCG
1 CGTTGCGAT--TC---TCT
*
48719 CGTTGCGATTTTCT
1 CGTTGCGATTCTCT
48733 CGTTGCGAT
1 CGTTGCGAT
48742 AGTCATTTCC
Statistics
Matches: 85, Mismatches: 8, Indels: 30
0.69 0.07 0.24
Matches are distributed among these distances:
14 39 0.46
16 8 0.09
17 7 0.08
19 31 0.36
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:48649 original size:33 final size:33
Alignment explanation
Indices: 48607--48790 Score: 251
Period size: 33 Copynumber: 5.4 Consensus size: 33
48597 ATCGCATTGT
*
48607 GATTTTCATTTCGCGTTGTGATTCTCTCGTTGC
1 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
48640 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
48673 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
** *
48706 GATAGTCATTTCGCGTTGCGATTTTCTCGTTGC
1 GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
**
48739 GATAGTCATTTCCGCGTTGCGATTTTCATTATCTCGTTGC
1 GATTTTCATTT-CGCGTTGCGA--TTC----TCTCGTTGC
48779 GATTTTCATTTC
1 GATTTTCATTTC
48791 AACCAAAAGA
Statistics
Matches: 137, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
33 106 0.77
34 10 0.07
36 2 0.01
39 1 0.01
40 18 0.13
ACGTcount: A:0.11, C:0.22, G:0.21, T:0.46
Consensus pattern (33 bp):
GATTTTCATTTCGCGTTGCGATTCTCTCGTTGC
Found at i:50939 original size:21 final size:21
Alignment explanation
Indices: 50915--50981 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
50905 TCATTCCTCG
50915 AGAGTCCCCTCCCACCATTCA
1 AGAGTCCCCTCCCACCATTCA
* * ** * * *
50936 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCATTCA
50957 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCATTCA
50978 AGAG
1 AGAG
50982 CCCGATTCAC
Statistics
Matches: 31, Mismatches: 14, Indels: 3
0.65 0.29 0.06
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCATTCA
Found at i:50939 original size:42 final size:42
Alignment explanation
Indices: 50893--50981 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
50883 CCTATCTTTG
*
50893 AAGAGGCCCCTATCATTCCTCG-AGA-GTCCCCTCCCACCATTC
1 AAGAGGCCACTATCA-TCCTCGAAGAGGT-CCCTCCCACCATTC
* * *
50935 AAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCACCATTC
1 AAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCACCATTC
50977 AAGAG
1 AAGAG
50982 CCCGATTCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 4 0.10
42 35 0.85
43 2 0.05
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.20
Consensus pattern (42 bp):
AAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCACCATTC
Found at i:52349 original size:14 final size:14
Alignment explanation
Indices: 52330--52365 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
52320 ATTGTTTAAT
52330 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
52344 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
52358 TGATTTGT
1 TGATTTGT
52366 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:52494 original size:19 final size:19
Alignment explanation
Indices: 52472--52563 Score: 96
Period size: 19 Copynumber: 5.4 Consensus size: 19
52462 AAAAATTACT
52472 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
52491 ATCGCAA--CG--AT-ATA
1 ATCGCAATGCGAAATGAAA
52505 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
52524 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
52538 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
52557 ATCGCAA
1 ATCGCAA
52564 CGACAAAATC
Statistics
Matches: 59, Mismatches: 4, Indels: 20
0.71 0.05 0.24
Matches are distributed among these distances:
14 19 0.32
15 3 0.05
16 4 0.07
17 4 0.07
18 3 0.05
19 26 0.44
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:52514 original size:33 final size:33
Alignment explanation
Indices: 52472--52597 Score: 182
Period size: 33 Copynumber: 3.8 Consensus size: 33
52462 AAAAATTACT
* *
52472 ATCGCAATGCGAAATGAAAATCGCAACGATATA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
52505 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
52538 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
52571 ATCGAAACGCGAAACT-AAAATCGCAAC
1 ATCGCAATGCGAAA-TGAAAATCGCAAC
52598 ACGAAACTAA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
33 85 0.99
34 1 0.01
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:52592 original size:19 final size:19
Alignment explanation
Indices: 52568--52608 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
52558 TCGCAACGAC
*
52568 AAAATCGAAACGCGAAACT
1 AAAATCGAAACACGAAACT
*
52587 AAAATCGCAACACGAAACT
1 AAAATCGAAACACGAAACT
52606 AAA
1 AAA
52609 TTCGCATTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.22, G:0.12, T:0.10
Consensus pattern (19 bp):
AAAATCGAAACACGAAACT
Found at i:52657 original size:33 final size:33
Alignment explanation
Indices: 52615--52706 Score: 148
Period size: 33 Copynumber: 2.8 Consensus size: 33
52605 TAAATTCGCA
* *
52615 TTGCGATTTTTATTTCGCTTTGCGATTCCCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
* *
52648 TTGCGATTTTCATTTCACATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
52681 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
52707 AGTAATTTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
Found at i:52672 original size:19 final size:19
Alignment explanation
Indices: 52648--52706 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
52638 GATTCCCTCG
52648 TTGCGATTTTCATTTCACA
1 TTGCGATTTTCATTTCACA
* *
52667 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCACA
*
52681 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCACA
52700 TTGCGAT
1 TTGCGAT
52707 AGTAATTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
14 9 0.29
16 3 0.10
17 3 0.10
19 16 0.52
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCACA
Found at i:52772 original size:20 final size:20
Alignment explanation
Indices: 52700--52772 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
52690 TCATTTCGCA
* *
52700 TTGCGATAGTAATTTCCGCG
1 TTGCGATAGTCATTTCCGTG
* **
52720 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTCCG-TG
52740 ATTGCGA-ATGTCATTTCCGTG
1 -TTGCGATA-GTCATTTCCGTG
52761 TTGCGATAGTCA
1 TTGCGATAGTCA
52773 AATGATTGCC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.55
21 12 0.30
22 3 0.08
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCGTG
Found at i:55050 original size:12 final size:12
Alignment explanation
Indices: 55033--55057 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55023 TCTTCGGGGA
55033 CTTTTTCTTCTT
1 CTTTTTCTTCTT
55045 CTTTTTCTTCTT
1 CTTTTTCTTCTT
55057 C
1 C
55058 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:55267 original size:24 final size:24
Alignment explanation
Indices: 55233--55286 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
55223 CTGAAACATC
*
55233 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
55257 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
55281 ATCAAA
1 ATCAAA
55287 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:56091 original size:20 final size:21
Alignment explanation
Indices: 56066--56114 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
56056 TCATAATTCA
*
56066 CAATGCGAA-TAAGTAAATCG
1 CAATGCGAATTAAGAAAATCG
* **
56086 CAATGCAAATTTGGAAAATCG
1 CAATGCGAATTAAGAAAATCG
56107 CAATGCGA
1 CAATGCGA
56115 TACTGACTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (21 bp):
CAATGCGAATTAAGAAAATCG
Found at i:56136 original size:20 final size:20
Alignment explanation
Indices: 56103--56181 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
56093 AATTTGGAAA
* *
56103 ATCGCAATGCGATACTGACT
1 ATCGCAACGAGATACTGACT
* *
56123 ATCGCAACGAGATAAT-ACAAA
1 ATCGCAACGAGATACTGAC--T
*
56144 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATACTGACT
* * *
56164 TTCACAACGAGATTCTGA
1 ATCGCAACGAGATACTGA
56182 AAATCGCAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
19 2 0.04
20 29 0.62
21 14 0.30
22 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGAGATACTGACT
Found at i:56409 original size:14 final size:14
Alignment explanation
Indices: 56390--56419 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
56380 TCATTTAACT
*
56390 ATCGCAACGGGGAA
1 ATCGCAACGCGGAA
56404 ATCGCAACGCGGAA
1 ATCGCAACGCGGAA
56418 AT
1 AT
56420 GGCTATCGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.23, G:0.30, T:0.10
Consensus pattern (14 bp):
ATCGCAACGCGGAA
Found at i:56429 original size:20 final size:20
Alignment explanation
Indices: 56404--56491 Score: 97
Period size: 20 Copynumber: 4.4 Consensus size: 20
56394 CAACGGGGAA
*
56404 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
56424 ATCGCAACGCGAAAATTGCT
1 ATCGCAACGCGAAAATGGCT
* ***
56444 ATCGCAATGCG-AAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
*
56464 ATCGCAACGTGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
56484 ATCGCAAC
1 ATCGCAAC
56492 TAGAAAATCG
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
19 4 0.07
20 45 0.83
21 5 0.09
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:56542 original size:14 final size:14
Alignment explanation
Indices: 56523--56576 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
56513 GAAAATCGCA
56523 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
56537 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
56554 CATTGCGATTTTCTCG
1 --TTGCGATTTTCTCG
56570 TTGCGAT
1 TTGCGAT
56577 AGTCAGTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
16 3 0.09
17 3 0.09
19 11 0.31
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.48
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:56542 original size:33 final size:33
Alignment explanation
Indices: 56505--56575 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
56495 AAAATCGCAA
56505 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
** ** **
56538 TGCGATTTTCATTTCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
56571 TGCGA
1 TGCGA
56576 TAGTCAGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (33 bp):
TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
Found at i:58204 original size:41 final size:42
Alignment explanation
Indices: 58150--58241 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
58140 CCTCTTCAAC
* *
58150 GATGACAGTGGCCTCTTGAACG-GTGGGGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
* *
58191 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
*
58233 AATGACAGG
1 GATGACAGG
58242 TGAGTCGGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 20 0.45
42 24 0.55
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGG
Found at i:58605 original size:20 final size:20
Alignment explanation
Indices: 58580--58652 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
58570 GAAGAATAGT
* *
58580 TTACTTTCGCAACATGAAAC
1 TTACTTTCGCAACACGAAAA
58600 TTACTTTCGCAACACGAAAA
1 TTACTTTCGCAACACGAAAA
* * *
58620 TGACTATCGCAACGCGAAAA
1 TTACTTTCGCAACACGAAAA
* *
58640 TGACTATCGCAAC
1 TTACTTTCGCAAC
58653 GCGGAAATGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAA
Found at i:58631 original size:40 final size:40
Alignment explanation
Indices: 58586--58671 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
58576 TAGTTTACTT
* * * *
58586 TCGCAACATGAAACTTACTTTCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTATCGCAACACGAAAATGACTA
* * * *
58626 TCGCAACGCGAAAATGACTATCGCAACGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTATCGCAACACGAAAATGACTA
58666 TCGCAA
1 TCGCAA
58672 TGCGAAATGA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (40 bp):
TCGCAACACGAAAATGACTATCGCAACACGAAAATGACTA
Found at i:58653 original size:20 final size:20
Alignment explanation
Indices: 58606--58678 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
58596 AAACTTACTT
*
58606 TCGCAACACGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
58626 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* *
58646 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
*
58666 TCGCAATGCGAAA
1 TCGCAACGCGAAA
58679 TGAAAATCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:58740 original size:19 final size:19
Alignment explanation
Indices: 58718--58834 Score: 74
Period size: 19 Copynumber: 6.6 Consensus size: 19
58708 GAAACACAAA
58718 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
58737 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
58753 TCG--TTGCAATTTTCATT
1 TCGCATTGCGATTTTCATT
*
58770 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
58786 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* * ***
58803 TTGCACTGCGATAGCCATT
1 TCGCATTGCGATTTTCATT
58822 TCCGCATTGCGAT
1 T-CGCATTGCGAT
58835 AGTCATTTTC
Statistics
Matches: 73, Mismatches: 14, Indels: 21
0.68 0.13 0.19
Matches are distributed among these distances:
14 11 0.15
15 6 0.08
16 8 0.11
17 7 0.10
18 6 0.08
19 26 0.36
20 9 0.12
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:58759 original size:14 final size:14
Alignment explanation
Indices: 58740--58798 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
58730 TTTCATTTCG
58740 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
58754 CGTTGCAATTTTCATTT
1 CGTTGCGA-TTT--TGT
58771 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
58787 CGTTGCGATTTT
1 CGTTGCGATTTT
58799 CATTTTGCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 17 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 5 0.14
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:58770 original size:33 final size:33
Alignment explanation
Indices: 58723--58814 Score: 148
Period size: 33 Copynumber: 2.8 Consensus size: 33
58713 ACAAATCGCA
*
58723 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
58756 TTGCAATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
* *
58789 TTGCGATTTTCATTTTGCACTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
58815 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:59417 original size:18 final size:18
Alignment explanation
Indices: 59394--59441 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
59384 CGGGTCGATC
*
59394 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTAGGTG
*
59412 AGGTGATAGCTCTAGGTG
1 AGGTGATGGCTCTAGGTG
59430 AGGTGATGGCTC
1 AGGTGATGGCTC
59442 CCGAAGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.17, C:0.12, G:0.44, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTAGGTG
Found at i:60785 original size:20 final size:20
Alignment explanation
Indices: 60760--60802 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
60750 AATAGTTTCT
60760 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
*
60780 GAAAATGAAAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
60800 GAA
1 GAA
60803 TTTGACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:61098 original size:20 final size:21
Alignment explanation
Indices: 61073--61122 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
61063 CTCTGAGAGA
61073 TGGAGAT-AGACGGATTTCGC
1 TGGAGATGAGACGGATTTCGC
*
61093 TGGAGATGGGGACGGATTTCG-
1 TGGAGAT-GAGACGGATTTCGC
61114 TCGGAGATG
1 T-GGAGATG
61123 GGTGAGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 7 0.27
21 2 0.08
22 17 0.65
ACGTcount: A:0.22, C:0.12, G:0.42, T:0.24
Consensus pattern (21 bp):
TGGAGATGAGACGGATTTCGC
Found at i:61109 original size:22 final size:22
Alignment explanation
Indices: 61081--61124 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
61071 GATGGAGATA
61081 GACGGATTTCG-CTGGAGATGGG
1 GACGGATTTCGTC-GGAGATGGG
61103 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
61125 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:61342 original size:20 final size:20
Alignment explanation
Indices: 61317--61383 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
61307 GTATTATCTC
*
61317 GTTGCGAAAGTCAGTATTGA
1 GTTGCGAAAGTCAGTATCGA
* *
61337 GTTGCGAAATTAAGTATCGA
1 GTTGCGAAAGTCAGTATCGA
* *
61357 GTTGCGAAAGTCAGTACCGC
1 GTTGCGAAAGTCAGTATCGA
61377 GTTGCGA
1 GTTGCGA
61384 TTTTCCAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (20 bp):
GTTGCGAAAGTCAGTATCGA
Found at i:61404 original size:21 final size:21
Alignment explanation
Indices: 61378--61486 Score: 134
Period size: 21 Copynumber: 5.3 Consensus size: 21
61368 CAGTACCGCG
61378 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
61399 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
** *
61420 TTGCGATAGT-C-AGTATCGCA
1 TTGCGATTTTCCAAAT-TCGCA
61440 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTCCAAATTCGCA
* **
61461 TTGCGA-TTTACTTATTCGCA
1 TTGCGATTTTCCAAATTCGCA
61481 TTGCGA
1 TTGCGA
61487 ATCGGGAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
19 2 0.03
20 31 0.41
21 41 0.54
22 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (21 bp):
TTGCGATTTTCCAAATTCGCA
Found at i:61431 original size:62 final size:61
Alignment explanation
Indices: 61358--61487 Score: 197
Period size: 62 Copynumber: 2.1 Consensus size: 61
61348 AAGTATCGAG
* *
61358 TTGCGAAAGTCAGTACCGCGTTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAATTCGCA
1 TTGCGAAAGTCAGTACCGCATTGCGATTTTCCAAATTCGCATTGCGA-TTTACAAATTCGCA
* * **
61420 TTGCGATAGTCAGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTTATTCGCA
1 TTGCGAAAGTCAGTACCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACAAATTCGCA
61481 TTGCGAA
1 TTGCGAA
61488 TCGGGAAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
61 17 0.28
62 44 0.72
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (61 bp):
TTGCGAAAGTCAGTACCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACAAATTCGCA
Found at i:61480 original size:41 final size:39
Alignment explanation
Indices: 61392--61486 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 39
61382 GATTTTCCAA
*
61392 ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATAGTC
1 ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATACTC
*
61431 AGTATCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTT
1 A-T-TCGCATTGCGATTTTCCAAATTCGCATTGCGA--TACTC
61474 ATTCGCATTGCGA
1 ATTCGCATTGCGA
61487 ATCGGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
39 1 0.02
40 1 0.02
41 43 0.86
42 1 0.02
43 4 0.08
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (39 bp):
ATTCGCATTGCGATTTTCCAAATTCGCATTGCGATACTC
Found at i:61500 original size:62 final size:62
Alignment explanation
Indices: 61378--61501 Score: 160
Period size: 62 Copynumber: 2.0 Consensus size: 62
61368 CAGTACCGCG
* * **
61378 TTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAATTCGCATTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCGATAGGCAAAATCGCA
** * *
61440 TTGCGATTTTCCAAATTCGCATTGCGA-TTTACTTATTCGCATTGCGAATCGGGAAAATCGCA
1 TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCG-ATAGGCAAAATCGCA
61502 ACGCGAAATT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 16 0.30
62 37 0.70
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (62 bp):
TTGCGATTTTCCAAATTCGCATTGCGATTTTACAAATTCGCATTGCGATAGGCAAAATCGCA
Found at i:61528 original size:21 final size:22
Alignment explanation
Indices: 61476--61528 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
61466 ATTTACTTAT
61476 TCGCATTGCG-AATCGGGAAAA
1 TCGCATTGCGAAATCGGGAAAA
** *
61497 TCGCAACGCGAAAT-TGGAAAA
1 TCGCATTGCGAAATCGGGAAAA
61518 TCGCATTGCGA
1 TCGCATTGCGA
61529 TAGTCATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (22 bp):
TCGCATTGCGAAATCGGGAAAA
Found at i:63522 original size:20 final size:20
Alignment explanation
Indices: 63497--63548 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
63487 AACAGGTTGA
63497 AGTTTGACAAAACCAATTTC
1 AGTTTGACAAAACCAATTTC
63517 AGTTTGACAAAACCAATTTC
1 AGTTTGACAAAACCAATTTC
63537 AGTTTGACAAAA
1 AGTTTGACAAAA
63549 TCGGTAGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (20 bp):
AGTTTGACAAAACCAATTTC
Found at i:65795 original size:44 final size:46
Alignment explanation
Indices: 65674--65800 Score: 152
Period size: 48 Copynumber: 2.8 Consensus size: 46
65664 TATAAAATCT
* *
65674 CTTACCATTT-ATCCCATAAGCTCGTAAGCTTATATTACCAAAATA
1 CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
65719 CTTACCATTTAAAATTCCATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCATTT--AATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* * *
65767 CTTGCCA-TT-ATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTT
65801 GCATGGTTAC
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
44 23 0.32
45 10 0.14
47 2 0.03
48 37 0.51
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (46 bp):
CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:73871 original size:14 final size:14
Alignment explanation
Indices: 73852--73883 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
73842 CGTTCGTGAA
73852 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
73866 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
73880 CGTT
1 CGTT
73884 TATGTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.28, T:0.50
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:73900 original size:24 final size:24
Alignment explanation
Indices: 73853--73903 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
73843 GTTCGTGAAC
* *
73853 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
* *
73877 GTTCGTTTATGTTCATTCATTTAT
1 GTTCGGTTATGTTCATTCAGTTAT
73901 GTT
1 GTT
73904 TAACCCAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.55
Consensus pattern (24 bp):
GTTCGGTTATGTTCATTCAGTTAT
Found at i:74895 original size:16 final size:16
Alignment explanation
Indices: 74872--74948 Score: 136
Period size: 16 Copynumber: 4.8 Consensus size: 16
74862 GGGTCTCCAA
*
74872 CGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
*
74888 CATTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
74904 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
74920 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
74936 CGTTTATGTTCGT
1 CGTTTATGTTCGT
74949 TTATTTATTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 58 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:74913 original size:10 final size:10
Alignment explanation
Indices: 74900--74952 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 10
74890 TTTATGTTCG
74900 TGTTCGTTTA
1 TGTTCGTTTA
74910 TGTTCG----
1 TGTTCGTTTA
74916 TGTTCGTTTA
1 TGTTCGTTTA
74926 TGTTCG----
1 TGTTCGTTTA
74932 TGTTCGTTTA
1 TGTTCGTTTA
74942 TGTTCGTTTA
1 TGTTCGTTTA
74952 T
1 T
74953 TTATTAAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
6 12 0.34
10 23 0.66
ACGTcount: A:0.08, C:0.11, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:75039 original size:16 final size:16
Alignment explanation
Indices: 75018--75050 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75008 AAAAATATTT
75018 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
75034 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
75050 T
1 T
75051 TTTTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:75858 original size:178 final size:179
Alignment explanation
Indices: 75558--75919 Score: 611
Period size: 178 Copynumber: 2.0 Consensus size: 179
75548 TATATGTATT
* * *
75558 GATACTTTTGGTCTAGTATGCTTCCCAAACGACATGCACACAGAAAGTATCGATACACGTATCAC
1 GATACTTGTGGTCCAGTACGCTTCCCAAACGACATGCACACAGAAAGTATCGATACACGTATCAC
75623 AAGTATCAATACTTATAACTTCGAAACCAGTTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
66 AAGTATCAATACTTATAACTTCGAAACCAGTTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
* * *
75688 TGGTGAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTC
131 CGGTAAAAATATACCAGTTTAATGACAAAATGCATAAACATAAAGTTTC
* *
75737 GATACTTGTGGTCCAGTACGCTTCCCAAACGACATGCACACA-CAAGTATCGATACATGTATCAC
1 GATACTTGTGGTCCAGTACGCTTCCCAAACGACATGCACACAGAAAGTATCGATACACGTATCAC
*
75801 AAGTATCGATACTTATAACTTCGAAACC-GATTACTTTAAAGTAATAGGTAAATTTACAATGTAA
66 AAGTATCAATACTTATAACTTCGAAACCAG-TTACTTTAAAGTAATAGGTAAATTTACAATGTAA
*
75865 GCGGTAAAAATATACCGGTTTAATGACAAAATGCATAAACATAAAGTTTC
130 GCGGTAAAAATATACCAGTTTAATGACAAAATGCATAAACATAAAGTTTC
75915 GATAC
1 GATAC
75920 CTTTGTATAT
Statistics
Matches: 172, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
177 1 0.01
178 132 0.77
179 39 0.23
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (179 bp):
GATACTTGTGGTCCAGTACGCTTCCCAAACGACATGCACACAGAAAGTATCGATACACGTATCAC
AAGTATCAATACTTATAACTTCGAAACCAGTTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
CGGTAAAAATATACCAGTTTAATGACAAAATGCATAAACATAAAGTTTC
Found at i:75985 original size:178 final size:176
Alignment explanation
Indices: 75623--76190 Score: 506
Period size: 178 Copynumber: 3.1 Consensus size: 176
75613 CACGTATCAC
*
75623 AAGTATCAATACTTATAACTTCGAAACC-AGTTACTTTAAAGTAATAGGTAAATTTACAATGTAA
1 AAGTATCGATACTTATAACTTCGAAACCGA-TTACTTTAAAGTAATAGGTAAATTTACAATGTAA
* * *
75687 GTGGTGAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATA-C-TTG--T-G
65 GCGGTAAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATACCTTTGTATAT
* * ** * * * * * * *
75747 GT-CCAGTACGCTTCCCAA-ACGACATGCACACACAA-GTATCGATACATGTATCAC
130 GTATCAATACTTTTTCCAATATG-C-TTC-C-CA-AACG-A--GATGCACGCA--AA
75801 AAGTATCGATACTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
1 AAGTATCGATACTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
* *
75866 CGGTAAAAATATACCGGTTTAATGACAAAATGCATAAACATAAAGTTTCGATACCTTTGTATATG
66 CGGTAAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATACCTTTGTATATG
75931 TATCAATACTTTTGGTCCAATATGCTTCCCAAACGAGATGCACGCAGAAAGTATCGA
131 TATCAATACTTTT--TCCAATATGCTTCCCAAACGAGATGCACGC----A--A---A
*
75988 TACACGTATCACAAGTATCGATTTTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAAT
1 -A-A-GTAT--CGA-TA-C-----TTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAAT
* * * * * *
76053 TTACACTATAACCGATAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAATTTTCGATA
54 TTACAATGTAAGCGGTAAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATA
* *
76118 CTTTTTGTATATGTATCGATACTTTTATTCCAATATGCTTCCCAAACGAGATGCACGCAAA
119 C-CTTTGTATATGTATCAATAC-TTT-TTCCAATATGCTTCCCAAACGAGATGCACGCAAA
76179 AAGTATCGATAC
1 AAGTATCGATAC
76191 ACGTATCACA
Statistics
Matches: 326, Mismatches: 31, Indels: 60
0.78 0.07 0.14
Matches are distributed among these distances:
178 111 0.34
179 2 0.01
180 9 0.03
182 4 0.01
183 5 0.02
184 11 0.03
185 4 0.01
186 7 0.02
187 2 0.01
188 5 0.02
189 2 0.01
190 5 0.02
191 1 0.00
192 2 0.01
193 2 0.01
194 2 0.01
196 1 0.00
199 99 0.30
200 48 0.15
201 3 0.01
202 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (176 bp):
AAGTATCGATACTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTAAG
CGGTAAAAATATACCAGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATACCTTTGTATATG
TATCAATACTTTTTCCAATATGCTTCCCAAACGAGATGCACGCAAA
Found at i:76018 original size:377 final size:382
Alignment explanation
Indices: 75530--76289 Score: 1001
Period size: 377 Copynumber: 2.0 Consensus size: 382
75520 TGCACGCAAA
** * ** * *
75530 AAAGTTTCAATATTTTTTTATATGTATTGATACTTTTGGTCTAGTATGCTTCCCAAACGACATGC
1 AAAGTTTCAATACCTTTGTATATGTATCAATACTTTTGGTCCAATATGCTTCCCAAACGACATGC
75595 ACACAGAAAGTATCGATACACGTATCACAAGTATCAATACTTATAACTTCGAAACC-AGTTACTT
66 ACACAGAAAGTATCGATACACGTATCACAAGTATCAATACTTATAACTTCGAAACCGA-TTACTT
* ** * * *
75659 TAAAGTAATAGGTAAATTTACAATGTAAGTGGTGAAAATATACCAGTTTAATGACAAAATGCGTA
130 TAAAGTAATAGGTAAATTTACAATATAACCGATAAAAATATACCAATTTAATGACAAAATGCGTA
* *
75724 AACATAAAGTTTCGATAC-TTG-TG-G-TCCAGTACGCTTCCCAAACGACATGCACAC-ACAAGT
195 AACATAAAGTTTCGATACTTTGATGTGTTCCAATACGCTTCCCAAACGACATGCACACAAAAAGT
* * * *
75784 ATCGATACATGTATCACAAGTATCGATACTTATAACTTCGAAACCGATTACTTTAAAGTAATAGG
260 ATCGATACACGTATCACAAGTATCGATACTTATAACTTCAAAACCAATTACTTTAAAGTAATAGA
*
75849 TAAATTTACAATGTAAGCGGTAAAAATATACCGGTTTAATGACAAAATGCATAAACAT
325 TAAATTTACAATGTAAGCGGTAAAAATATACCGATTTAATGACAAAATGCATAAACAT
* *
75907 AAAGTTTCGATACCTTTGTATATGTATCAATACTTTTGGTCCAATATGCTTCCCAAACGAGATGC
1 AAAGTTTCAATACCTTTGTATATGTATCAATACTTTTGGTCCAATATGCTTCCCAAACGACATGC
* * **
75972 ACGCAGAAAGTATCGATACACGTATCACAAGTATCGATTTTTATAACTTCGAAACCGATTACTTT
66 ACACAGAAAGTATCGATACACGTATCACAAGTATCAATACTTATAACTTCGAAACCGATTACTTT
*
76037 AAAGTAATAGGTAAATTTACACTATAACCGATAAAAATATACCAATTTAATGACAAAATGCGTAA
131 AAAGTAATAGGTAAATTTACAATATAACCGATAAAAATATACCAATTTAATGACAAAATGCGTAA
* *
76102 ACATAAATTTTCGATACTTTTTGTATATGTATCGATACTTTTATTCCAATATGCTTCCCAAACGA
196 ACATAAAGTTTCGATAC--TTTG---ATG--T-G---------TTCCAATACGCTTCCCAAACGA
* * *
76167 GATGCACGCAAAAAGTATCGATACACGTATCACAAGTATCGATTCTTATAACTTCAAAACCAATT
244 CATGCACACAAAAAGTATCGATACACGTATCACAAGTATCGATACTTATAACTTCAAAACCAATT
* * *
76232 ACTTTAAAGTAATAGATAAATTTATAATGTAAGTGGTAAAAATCTACCGATTTAATGA
309 ACTTTAAAGTAATAGATAAATTTACAATGTAAGCGGTAAAAATATACCGATTTAATGA
76290 TAATATGCGT
Statistics
Matches: 325, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
377 189 0.58
378 1 0.00
380 3 0.01
384 2 0.01
388 1 0.00
398 26 0.08
399 103 0.32
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (382 bp):
AAAGTTTCAATACCTTTGTATATGTATCAATACTTTTGGTCCAATATGCTTCCCAAACGACATGC
ACACAGAAAGTATCGATACACGTATCACAAGTATCAATACTTATAACTTCGAAACCGATTACTTT
AAAGTAATAGGTAAATTTACAATATAACCGATAAAAATATACCAATTTAATGACAAAATGCGTAA
ACATAAAGTTTCGATACTTTGATGTGTTCCAATACGCTTCCCAAACGACATGCACACAAAAAGTA
TCGATACACGTATCACAAGTATCGATACTTATAACTTCAAAACCAATTACTTTAAAGTAATAGAT
AAATTTACAATGTAAGCGGTAAAAATATACCGATTTAATGACAAAATGCATAAACAT
Found at i:76218 original size:200 final size:200
Alignment explanation
Indices: 75735--76340 Score: 847
Period size: 200 Copynumber: 3.0 Consensus size: 200
75725 ACATAAAGTT
* * * * * * * *
75735 TCGATACTTGTGGTCCAGTACGCTTCCCAAACGACATGCACAC-ACAAGTATCGATACATGTATC
1 TCGATACTTTTAGTCCAATATGCTTCCCAAACGAGATGCACGCAAAAAGTATCGATACACGTATC
*
75799 ACAAGTATCGATACTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTA
66 ACAAGTATCGATTCTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTA
* * * *
75864 AGCGGTAAAAATATACCGGTTTAATGACAAAATGCATAAACATAAAGTTTCGATAC-CTTTGTAT
131 AGCGGTAAAAATATACCGATTTAATGACAAAATGCGTAAACATAAATTTTCGATACTTTTTGTAT
75928 ATGTA
196 ATGTA
* * *
75933 TCAATACTTTTGGTCCAATATGCTTCCCAAACGAGATGCACGCAGAAAGTATCGATACACGTATC
1 TCGATACTTTTAGTCCAATATGCTTCCCAAACGAGATGCACGCAAAAAGTATCGATACACGTATC
* * *
75998 ACAAGTATCGATTTTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACACTATA
66 ACAAGTATCGATTCTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTA
* * *
76063 ACCGATAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAATTTTCGATACTTTTTGTAT
131 AGCGGTAAAAATATACCGATTTAATGACAAAATGCGTAAACATAAATTTTCGATACTTTTTGTAT
76128 ATGTA
196 ATGTA
*
76133 TCGATACTTTTATTCCAATATGCTTCCCAAACGAGATGCACGCAAAAAGTATCGATACACGTATC
1 TCGATACTTTTAGTCCAATATGCTTCCCAAACGAGATGCACGCAAAAAGTATCGATACACGTATC
* * * *
76198 ACAAGTATCGATTCTTATAACTTCAAAACCAATTACTTTAAAGTAATAGATAAATTTATAATGTA
66 ACAAGTATCGATTCTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTA
* * * * * * * * *
76263 AGTGGTAAAAATCTACCGATTTAATGATAATATGCGTTAGCAAAAAATTATCGATACTTCTTGTA
131 AGCGGTAAAAATATACCGATTTAATGACAAAATGCGTAAAC-ATAAATTTTCGATACTTTTTGTA
*
76328 TAGGTA
195 TATGTA
*
76334 CCGATAC
1 TCGATAC
76341 ATTCAATCTA
Statistics
Matches: 360, Mismatches: 45, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
198 37 0.10
199 129 0.36
200 163 0.45
201 31 0.09
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (200 bp):
TCGATACTTTTAGTCCAATATGCTTCCCAAACGAGATGCACGCAAAAAGTATCGATACACGTATC
ACAAGTATCGATTCTTATAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTA
AGCGGTAAAAATATACCGATTTAATGACAAAATGCGTAAACATAAATTTTCGATACTTTTTGTAT
ATGTA
Found at i:76782 original size:18 final size:18
Alignment explanation
Indices: 76759--76800 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
76749 ACACATTTTT
76759 TTCTCAACCAAAAC-CTTC
1 TTCTCAACC-AAACTCTTC
*
76777 TTCTCAACCAAGCTCTTC
1 TTCTCAACCAAACTCTTC
76795 TTCTCA
1 TTCTCA
76801 TGTAAGGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.26, C:0.38, G:0.02, T:0.33
Consensus pattern (18 bp):
TTCTCAACCAAACTCTTC
Found at i:78893 original size:15 final size:15
Alignment explanation
Indices: 78873--78902 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
78863 AGACTATTAG
78873 AACATTGTTATGTAT
1 AACATTGTTATGTAT
*
78888 AACATTGTTTTGTAT
1 AACATTGTTATGTAT
78903 GTATGTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (15 bp):
AACATTGTTATGTAT
Found at i:79234 original size:6 final size:6
Alignment explanation
Indices: 79223--79286 Score: 76
Period size: 6 Copynumber: 10.7 Consensus size: 6
79213 ATTATGCAGT
* * *
79223 TTTCAA TTTCAA TTTGAAA TTT-AA TTTCAA TTTCAA TTTCAA TTTGAG
1 TTTCAA TTTCAA TTT-CAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
*
79271 TTTGAA TTTCAA TTTC
1 TTTCAA TTTCAA TTTC
79287 GGCTCCATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
5 5 0.10
6 41 0.80
7 5 0.10
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (6 bp):
TTTCAA
Found at i:79250 original size:18 final size:18
Alignment explanation
Indices: 79223--79286 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
79213 ATTATGCAGT
79223 TTTCAATTTCAATTTGAAA
1 TTTCAATTTCAATTTG-AA
*
79242 TTT-AATTTCAATTTCAA
1 TTTCAATTTCAATTTGAA
* *
79259 TTTCAATTTGAGTTTGAA
1 TTTCAATTTCAATTTGAA
79277 TTTCAATTTC
1 TTTCAATTTC
79287 GGCTCCATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
17 5 0.13
18 31 0.79
19 3 0.08
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (18 bp):
TTTCAATTTCAATTTGAA
Found at i:79257 original size:30 final size:30
Alignment explanation
Indices: 79223--79286 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 30
79213 ATTATGCAGT
79223 TTTCAATTTCAATTTGAAATTT-AATTTCAA
1 TTTCAATTTCAATTTG-AATTTGAATTTCAA
*
79253 TTTCAATTTCAATTTGAGTTTGAATTTCAA
1 TTTCAATTTCAATTTGAATTTGAATTTCAA
79283 TTTC
1 TTTC
79287 GGCTCCATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (30 bp):
TTTCAATTTCAATTTGAATTTGAATTTCAA
Found at i:80876 original size:20 final size:21
Alignment explanation
Indices: 80837--80883 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
80827 ATAAACATAA
*
80837 AGTATCGATACTTATTATTCC
1 AGTATCGACACTTATTATTCC
*
80858 ATTATCGACACTT-TTATTCC
1 AGTATCGACACTTATTATTCC
80878 AGTATC
1 AGTATC
80884 CATCTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (21 bp):
AGTATCGACACTTATTATTCC
Found at i:81258 original size:20 final size:20
Alignment explanation
Indices: 81235--81283 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
81225 TAATTGGAAA
*
81235 TTGACAAAACTGGTTAAAAT
1 TTGACAAAACCGGTTAAAAT
81255 TTGACAAAACCGGTTAAAAT
1 TTGACAAAACCGGTTAAAAT
81275 TTGACAAAA
1 TTGACAAAA
81284 TCAATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (20 bp):
TTGACAAAACCGGTTAAAAT
Found at i:81291 original size:20 final size:20
Alignment explanation
Indices: 81248--81292 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
81238 ACAAAACTGG
**
81248 TTAAAATTTGACAAAACCGG
1 TTAAAATTTGACAAAACCAA
*
81268 TTAAAATTTGACAAAATCAA
1 TTAAAATTTGACAAAACCAA
81288 TTAAA
1 TTAAA
81293 TATAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (20 bp):
TTAAAATTTGACAAAACCAA
Found at i:83673 original size:226 final size:226
Alignment explanation
Indices: 83257--86030 Score: 3476
Period size: 226 Copynumber: 12.4 Consensus size: 226
83247 AAAACTGAAT
* * * **
83257 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCACTACCTATTACGTTACATCAGAACTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * *
83322 GTTATTATGGTTTATAACAAATCAAGTAATTAATCGGTTATGTTATCGTCAGATTTCTAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* *
83387 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTTATAATATTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
*
83452 TAAGTAATTAACCTATTTTGTTATCATCGGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * * *** *
83483 TTACAAAGGCCCCATTATCTTTAAAAATATGCTACCTATTACGTTACATAAGCGCTATCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * * * * *
83548 GTTATTATGGTTAATAACAAATCAAGTAATTAACCGATTATGTTATCATCGGGTTTCTAAAGTTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
83613 AATCAGCTTAAACTTTGGTAACATTTTAGGTGTTACATAATATGTTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
* **
83678 TAAGCAATTAACCTATTTTGTTATCGTTAGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * ** *
83709 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACATACTACGTTACATAAATGCTACATAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
*
83774 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGGTTTCTAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
83839 CATCAGCTTAAACTTTGGTAA-ACTTTGAGGCGTTACCTAATATGTTAATAATATTGATAACAAA
131 CATCAGCTTAAACTTTGGTAACA-TTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* *
83903 TTAAGTAATTAACCTATTTTGTTATCATCGGG
195 TTAAGTAATTAACCTATTTTGTTATCGTCGGA
* * ** *
83935 TTACTAAGGCCCCATCATCTTTAAAAA-ATGCTACCTATTACGTTACGTAAGCGCTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * * *
83999 G---TTA----T--T-A-AAATCAAGTAATTAATCAGTTATGTTATCATCGGATTTCTATGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
84053 CATTAGCTTAAACTTTAGTAACATTTTAGGCGTTACTTAATATGTTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
*
84118 TAAGTAATTAACCTATTTTGTTATCGTCAGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * * * *
84149 TTTCTAAAGCCCCATCAGCTTTAAAAAGGTGCTACATATTGCGTTACATAAACACTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * **** * * *
84214 GCTATTATTGTTGATAATGCTTCAAGTAATTAACCGATTATGTTATCGTTGGATTTCTAAGGCTT
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* *
84279 TATCAGCTTAATCTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
84344 TAAGTAATTAACCTATTTTGTTATCGTCGGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* * ** * * *
84375 TTTTTAAGGCCCCAT-AGGCTTTAGAAAGGCAATACATATTATGTTACATAAGCACTACCT-A-A
1 TTTCTAAGGCCCCATCA-GCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATA
* * *
84437 T-TTATTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGAATTTCTAAGGCC
65 TGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCT
* * * *
84501 CCATCAGTTTAAACTTTGGTAACATTTTAAGCGTTACCTAATATGTTGATAATATTGATAGCAAA
130 CCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* * **
84566 TGAAGTAATTAACCTATTTTTTTATCGTTAGA
195 TTAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * * * *
84598 TTTCTAAGGCCACATTAACTTTAAAAAGGCGCTACCTATTATGTTACATAAACGCTACTTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * * ** *
84663 ATTATTATGGTTGATAACACATCTAGTAATTAACCAATTATATTATCGTCGGATTTCTAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * *
84728 TATCAACTT-AAGTTGTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
131 CATCAGCTTAAACTT-TGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* * **
84792 TTAAATAATTAACCTATTTTTTTATTTTCGGA
195 TTAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * *
84824 TTTCTAAGGCCCTATCAGCTTTAAAAAGGCGCTACCCATTACATTACATAAGTGCTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* *
84889 GTTATTATGGTTGATAACAAATCAAGTAATTAACTGGTTATGTTATCGTCGGATTTATAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* *
84954 CATTAGCTTAATA-TTTGGTAACATTTTAGGCTTTACCTAATATGTTGATAATACTGATAACAAA
131 CATCAGCTTAA-ACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* * *
85018 TTAAATAATTAACCTATTTTGTTTTCGTTGGA
195 TTAAGTAATTAACCTATTTTGTTATCGTCGGA
* * ** * * *
85050 TTT-TAAGGCTCCATTAGCTTTAAAAAGGCGCTACCTATTAAATTACATAAGTGCTTCCTAATTT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * **** * * *
85114 TTTATTATTGTTGATAATGTTTCAAGTAATTAATCGGTTATGTTATCTTCGGATTTCTAAGGCTT
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * *
85179 CATTAGCTTAATCTTTGGTAACATTTTAGGTGTTACCTAATATATTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
*
85244 TAAGTAATTAACCTATTTTGTTATCATCGGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
*** * ** *
85275 TTTCTAAGGCTTTATCAACTTTAAAACA-TTGCT-CCGTATTACGTTACATAAGCGATACCTAAT
1 TTTCTAAGGCCCCATCAGCTTTAAAA-AGGCGCTACC-TATTACGTTACATAAGCGCTACCTAAT
* * * * * * *
85338 ATGTTATTATGATTGATAACAAATCTAGTAATTAACCGGTTTTGTTATCGTCGAATTTATATGGA
64 ATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGC
* * * ** * *
85403 TCCAACAGCTTAAACTTTGGTAATATTTGAGATGTTACCTAATATATTGATAATATTGATAACAA
129 TCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAA
* **
85468 ATTAATTAATTAACCTATTTTGTTATTTTCGGA
194 ATTAAGTAATTAACCTATTTTGTTATCGTCGGA
* * *
85501 TTTCTAAGGCCCCATCAGCTTTAAAAAGACGCTACCTATTACTTTACATAAGTGCTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * *
85566 GTTATTATGGTTGATAACAAATCAAGTAATTAACTGGTTATGTTATCGTTGGATTTATAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * *
85631 CATCAGCTTAAACTTTGTTAACATTTGAGGCGTTACCTAATATGTTGATAATGCTAATAA-AAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
* * *
85695 TAAGTAATTAACCTATTTTCTTATTGTCAGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* ** * * *
85726 TTTCTACGATCCCGTCAGCTTTATAAAGGCACTACCTATTACGTTACATAAGCGCTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* **** * * * * *
85791 GTTATTATTGTTGATAATGTTTCAAGTAATTAACTGGTTATGTTATCTTTGTATTTCTAAGGTTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * *
85856 CATCAGCTTAATCTTTGGTAACATTTTAGGTGTTACCTAATATGTTGATAATACTTATAGCAAAT
131 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
85921 TAAGTAATTAACCTATTTTGTTATCGTCGGA
196 TAAGTAATTAACCTATTTTGTTATCGTCGGA
* * * *
85952 TTTCTAAGG-CCCATCAGC-TT-AAAACGCACTTCCTATTACGTTACATTAGCGCTACCTAATAT
1 TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
86014 GTTATTATGGTTGATAA
66 GTTATTATGGTTGATAA
86031 TGTTTCCAGT
Statistics
Matches: 2188, Mismatches: 331, Indels: 61
0.85 0.13 0.02
Matches are distributed among these distances:
214 151 0.07
215 34 0.02
216 1 0.00
218 4 0.00
222 4 0.00
223 240 0.11
224 7 0.00
225 445 0.20
226 1295 0.59
227 6 0.00
228 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (226 bp):
TTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
TAAGTAATTAACCTATTTTGTTATCGTCGGA
Found at i:84128 original size:108 final size:108
Alignment explanation
Indices: 83784--84607 Score: 512
Period size: 108 Copynumber: 7.5 Consensus size: 108
83774 GTTATTATGG
* ** * *
83784 TTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGGTTTCTAAGGCTCCATCAGCTTA
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTA
* *
83849 AACTTTGGTAA-ACTTTGAGGCGTTACCTAATATGTTAATAATA
66 AACTTTGGTAACA-TTTTAGGCGTTACCTAATATGTTGATAATA
* * * * *
83892 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCATCGGGTTACTAAGGCCCCATCATCTTT
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGC-TT
*** * * * * ** *
83957 AAAAAATGCT-ACCTATTA--CGTTACGTAA-GCGCT-ACCTAATA
65 AAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGA--TAATA
* * * * * * * *
83998 TGTTATTA-AAATCAAGTAATTAATC-AGTTATGTTATCATCGGATTTCTATGGCTCCATTAGCT
1 T-TGATAACAAATTAAGTAATTAACCTA-TTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGCT
* *
84061 TAAACTTTAGTAACATTTTAGGCGTTACTTAATATGTTGATAATA
64 TAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATA
* * * *
84106 CTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAAGCCCCATCAGCTTT
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGC-TT
*** * * * * * *
84171 AAAAAGGTGCT-ACATATT--GCGTTACATAAACACTACCTAATATGCTATTA
65 -AAACTTTGGTAACATTTTAGGCGTTACCT--A-A-TA--T-GT-TGATAATA
* * * * * * * **
84221 TTGTTGATAATGCTTCAAGTAATTAACCGATTATGTTATCGTTGGATTTCTAAGGCTTTATCAGC
1 TTGATAACAA--ATT-AAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGC
*
84286 TTAATCTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATA
63 TTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATA
* * *
84332 CTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTTTAAGGCCCCAT-AGGCTT
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCA-GC-T
* * * * * * * * *
84396 TAGAA---AGGCAATACATATTA--TGTTACATAAGCACTACCTAATTTATTATGG
64 TA-AACTTTGG-TA-ACATTTTAGGCGTTACCT-A--A-TA--T-GTTGATAAT-A
* *** * * * *
84447 TTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGAATTTCTAAGGCCCCATCAGTTTA
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTA
*
84512 AACTTTGGTAACATTTTAAGCGTTACCTAATATGTTGATAATA
66 AACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATA
* * * **
84555 TTGATAGCAAATGAAGTAATTAACCTATTTTTTTATCGTTAGATTTCTAAGGC
1 TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGC
84608 CACATTAACT
Statistics
Matches: 532, Mismatches: 136, Indels: 96
0.70 0.18 0.13
Matches are distributed among these distances:
104 1 0.00
105 10 0.02
106 64 0.12
107 25 0.05
108 200 0.38
109 38 0.07
110 10 0.02
111 16 0.03
112 3 0.01
113 6 0.01
114 17 0.03
115 67 0.13
116 15 0.03
117 11 0.02
118 41 0.08
119 8 0.02
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (108 bp):
TTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTA
AACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATA
Found at i:85229 original size:451 final size:453
Alignment explanation
Indices: 83257--86030 Score: 3476
Period size: 451 Copynumber: 6.2 Consensus size: 453
83247 AAAACTGAAT
* * **
83257 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCACTACCTATTACGTTACATCAGAACTACCTAATAT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * *
83322 GTTATTATGGTTTATAACAAATCAAGTAATTAATCGGTTATGTTATCGTCAGATTTCTAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
83387 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTTATAATATTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
* * * * ***
83452 TAAGTAATTAACCTATTTTGTTATCATCGGATTACAAAGGCCCCATTATCTTTAAAAATATGCTA
196 TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTA
* *
83517 CCTATTACGTTACATAAGCGCTATCTAATATGTTATTATGGTTAATAACAAATCAAGTAATTAAC
261 CCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAAC
* * * * * * *
83582 CGATTATGTTATCATCGGGTTTCTAAAGTTCAATCAGCTTAAACTTTGGTAACATTTTAGG-TGT
326 TGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCTGT
* *
83646 TACATAATATGTTGATAATACTGATAACAAATTAAGCAATTAACCTATTTTGTTATCGTTAGA
391 TACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAGA
* * ** *
83709 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACATACTACGTTACATAAATGCTACATAATAT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
*
83774 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGGTTTCTAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* *
83839 CATCAGCTTAAACTTTGGTAA-ACTTTGAGGCGTTACCTAATATGTTAATAATATTGATAACAAA
131 CATCAGCTTAAACTTTGGTAACA-TTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* * * **
83903 TTAAGTAATTAACCTATTTTGTTATCATCGGGTTACTAAGGCCCCATCATCTTTAAAAA-ATGCT
195 TTAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCT
*
83967 ACCTATTACGTTACGTAAGCGCTACCTAATATG---TTA----T--T-A-AAATCAAGTAATTAA
260 ACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
* * * * *
84021 -TCAGTTATGTTATCATCGGATTTCTATGGCTCCATTAGCTTAAACTTTAGTAACATTTTAGGC-
325 CT-GGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCT
* *
84084 GTTACTTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGA
389 GTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAGA
* * * * * * *
84149 TTTCTAAAGCCCCATCAGCTTTAAAAAGGTGCTACATATTGCGTTACATAAACACTACCTAATAT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * **** * * *
84214 GCTATTATTGTTGATAATGCTTCAAGTAATTAACCGATTATGTTATCGTTGGATTTCTAAGGCTT
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
84279 TATCAGCTTAATCTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
* * * **
84344 TAAGTAATTAACCTATTTTGTTATCGTCGGATTTTTAAGGCCCCAT-AGGCTTTAGAAAGGCAAT
196 TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCA-GCTTTAAAAAGGCGCT
* * *
84408 ACATATTATGTTACATAAGCACTACCT-A-AT-TTATTATGGTTGATAACAAATCAAGTAATTAA
260 ACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
* * * * *
84470 CAGGTTATGTTATCGTCGAATTTCTAAGGCCCCATCAGTTTAAACTTTGGTAACATTTTAAGC-G
325 CTGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCTG
* * * *
84534 TTACCTAATATGTTGATAATATTGATAGCAAATGAAGTAATTAACCTATTTTTTTATCGTTAGA
390 TTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAGA
* * * * *
84598 TTTCTAAGGC-CACATTAACTTTAAAAAGGCGCTACCTATTATGTTACATAAACGCTACTTAATA
1 TTTCTAAGGCTC-CATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATA
* * * ** *
84662 TATTATTATGGTTGATAACACATCTAGTAATTAACCAATTATATTATCGTCGGATTTCTAAGGCT
65 TGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCT
* * *
84727 CTATCAACTT-AAGTTGTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAA
130 CCATCAGCTTAAACTT-TGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAA
* * ** *
84791 ATTAAATAATTAACCTATTTTTTTATTTTCGGATTTCTAAGGCCCTATCAGCTTTAAAAAGGCGC
194 ATTAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGCGC
* * *
84856 TACCCATTACATTACATAAGTGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTA
259 TACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTA
* *
84921 ACTGGTTATGTTATCGTCGGATTTATAAGGCTCCATTAGCTTAATA-TTTGGTAACATTTTAGGC
324 ACTGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAA-ACTTTGGTAACATTTTAGGC
* * *
84985 T-TTACCTAATATGTTGATAATACTGATAACAAATTAAATAATTAACCTATTTTGTTTTCGTTGG
388 TGTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAG
85049 A
453 A
* ** * * *
85050 TTT-TAAGGCTCCATTAGCTTTAAAAAGGCGCTACCTATTAAATTACATAAGTGCTTCCTAATTT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * **** * * *
85114 TTTATTATTGTTGATAATGTTTCAAGTAATTAATCGGTTATGTTATCTTCGGATTTCTAAGGCTT
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * * *
85179 CATTAGCTTAATCTTTGGTAACATTTTAGGTGTTACCTAATATATTGATAATACTGATAACAAAT
131 CATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
*** * **
85244 TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCTTTATCAACTTTAAAACA-TTGCT
196 TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAA-AGGCGCT
* * *
85308 -CCGTATTACGTTACATAAGCGATACCTAATATGTTATTATGATTGATAACAAATCTAGTAATTA
260 ACC-TATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTA
* * * * * * * * * *
85372 ACCGGTTTTGTTATCGTCGAATTTATATGGATCCAACAGCTTAAACTTTGGTAATATTTGA-GAT
324 ACTGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCT
* * * * *
85436 GTTACCTAATATATTGATAATATTGATAACAAATTAATTAATTAACCTATTTTGTTAT-TTTCGG
389 GTTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTT-AG
85500 A
453 A
* * * *
85501 TTTCTAAGGCCCCATCAGCTTTAAAAAGACGCTACCTATTACTTTACATAAGTGCTACCTAATAT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * *
85566 GTTATTATGGTTGATAACAAATCAAGTAATTAACTGGTTATGTTATCGTTGGATTTATAAGGCTC
66 GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * *
85631 CATCAGCTTAAACTTTGTTAACATTTGAGGCGTTACCTAATATGTTGATAATGCTAATAA-AAAT
131 CATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
* ** * * ** * * *
85695 TAAGTAATTAACCTATTTTCTTATTGTCAGATTTCTACGATCCCGTCAGCTTTATAAAGGCACTA
196 TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTA
* ****
85760 CCTATTACGTTACATAAGCGCTACCTAATATGTTATTATTGTTGATAATGTTTCAAGTAATTAAC
261 CCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAAC
* * * * *
85825 TGGTTATGTTATCTTTGTATTTCTAAGGTTCCATCAGCTTAATCTTTGGTAACATTTTAGG-TGT
326 TGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCTGT
* * **
85889 TACCTAATATGTTGATAATACTTATAGCAAATTAAGTAATTAACCTATTTTGTTATCGTCGGA
391 TACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAGA
* * * *
85952 TTTCTAAGGC-CCATCAGC-TT-AAAACGCACTTCCTATTACGTTACATTAGCGCTACCTAATAT
1 TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
86014 GTTATTATGGTTGATAA
66 GTTATTATGGTTGATAA
86031 TGTTTCCAGT
Statistics
Matches: 2010, Mismatches: 274, Indels: 80
0.85 0.12 0.03
Matches are distributed among these distances:
439 3 0.00
440 349 0.17
441 29 0.01
442 1 0.00
444 1 0.00
445 1 0.00
447 1 0.00
448 60 0.03
449 367 0.18
450 18 0.01
451 631 0.31
452 548 0.27
453 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (453 bp):
TTTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACCTATTACGTTACATAAGCGCTACCTAATAT
GTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTAAGGCTC
CATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
TAAGTAATTAACCTATTTTGTTATCATCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGCGCTA
CCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAAC
TGGTTATGTTATCGTCGGATTTCTAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCTGT
TACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTTAGA
Found at i:85470 original size:677 final size:677
Alignment explanation
Indices: 83257--86030 Score: 3442
Period size: 677 Copynumber: 4.1 Consensus size: 677
83247 AAAACTGAAT
* * * * **
83257 TTTCTAAGGCTCCATCAGCTTT-AAAAAGGCACTACCTATTACGTTACATCAGAACTACCTAATA
1 TTTCTAAGGCCCCATCAACTTTAAAAAATG--CTACCTATTACGTTACATAAGCGCTACCTAATA
* * *
83321 TGTTATTATGGTTTATAACAAATCAAGTAATTAATCGGTTATGTTATCGTC-AGATTTCTAAGGC
64 TGTTATTATGGTTGATAACAAATCAAGTAATTAACCAGTTATGTTATCGTCGA-ATTTCTAAGGC
* * *
83385 TCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTTATAATATTGATAACAA
128 TCCATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAA
* * * * * * *
83450 ATTAAGTAATTAACCTATTTTGTTATCATCGGATTACAAAGGCCCCATTATCTTTAAAAATATGC
193 ATTAAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGC
* *
83515 TACCTATTACGTTACATAAGCGCTATCTAATATGTTATTATGGTTAATAACAAATCAAGTAATTA
258 TACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTA
* * * * * * *
83580 ACCGATTATGTTATCATCGGGTTTCTAAAGTTCAATCAGCTTAAACTTTGGTAACATTTTAGGTG
323 ACCGATTATGTTATCGTCGGATTTATAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCG
* * *
83645 TTACATAATATGTTGATAATACTGATAACAAATTAAGCAATTAACCTATTTTGTTATCGTTAGAT
388 TTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGAT
* * ** *
83710 TTCTAAGGCTCCATCAGCTTTAAAAAGGCGCTACATACTACGTTACATAAATGCTACATAATATG
453 TTCTAAGGCTCCATCAGCTTTAAAAAGGCACTACATATTACGTTACATAAGCGCTACCTAATATG
* *
83775 TTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGGTTTCTAAGGCTCC
518 TTATTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGGATTTCTAAGGCTCC
* * *
83840 ATCAGCTTAAACTTTGGTAA-ACTTTGAGGCGTTACCTAATATGTTAATAATATTGATAACAAAT
583 ATCAGCTTAAACTTTGGTAACA-TTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
*
83904 TAAGTAATTAACCTATTTTGTTATCATCGGG
647 TAAGTAATTAACCTATTTTGTTATCATCGGA
* * *
83935 TTACTAAGGCCCCATCATCTTTAAAAAATGCTACCTATTACGTTACGTAAGCGCTACCTAATATG
1 TTTCTAAGGCCCCATCAACTTTAAAAAATGCTACCTATTACGTTACATAAGCGCTACCTAATATG
* * * *
84000 ---TTA----T--T-A-AAATCAAGTAATTAATCAGTTATGTTATCATCGGATTTCTATGGCTCC
66 TTATTATGGTTGATAACAAATCAAGTAATTAACCAGTTATGTTATCGTCGAATTTCTAAGGCTCC
* * * *
84054 ATTAGCTTAAACTTTAGTAACATTTTAGGCGTTACTTAATATGTTGATAATACTGATAACAAATT
131 ATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAATT
* * * **
84119 AAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAAGCCCCATCAGCTTTAAAAAGGTGCTAC
196 AAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGCTAC
* * * * * * ****
84184 ATATTGCGTTACATAAACACTACCTAATATGCTATTATTGTTGATAATGCTTCAAGTAATTAACC
261 CTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACC
* * ** *
84249 GATTATGTTATCGTTGGATTTCTAAGGCTTTATCAGCTTAATCTTTGGTAACATTTTAGGCGTTA
326 GATTATGTTATCGTCGGATTTATAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTA
* *
84314 CCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTT
391 CCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGATTTC
* * * * *
84379 TAAGGCCCCAT-AGGCTTTAGAAAGGCAATACATATTATGTTACATAAGCACTACCT-A-AT-TT
456 TAAGGCTCCATCA-GCTTTAAAAAGGCACTACATATTACGTTACATAAGCGCTACCTAATATGTT
* *
84440 ATTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGAATTTCTAAGGCCCCAT
520 ATTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGGATTTCTAAGGCTCCAT
* * * * *
84505 CAGTTTAAACTTTGGTAACATTTTAAGCGTTACCTAATATGTTGATAATATTGATAGCAAATGAA
585 CAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAA
* * **
84570 GTAATTAACCTATTTTTTTATCGTTAGA
650 GTAATTAACCTATTTTGTTATCATCGGA
* * ** * * *
84598 TTTCTAAGGCCACATTAACTTTAAAAAGGCGCTACCTATTATGTTACATAAACGCTACTTAATAT
1 TTTCTAAGGCCCCATCAACTTTAAAAA-ATGCTACCTATTACGTTACATAAGCGCTACCTAATAT
* * * * * *
84663 ATTATTATGGTTGATAACACATCTAGTAATTAACCAATTATATTATCGTCGGATTTCTAAGGCTC
65 GTTATTATGGTTGATAACAAATCAAGTAATTAACCAGTTATGTTATCGTCGAATTTCTAAGGCTC
* * *
84728 TATCAACTT-AAGTTGTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
130 CATCAGCTTAAACTT-TGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* * * * *
84792 TTAAATAATTAACCTATTTTTTTATTTTCGGATTTCTAAGGCCCTATCAGCTTTAAAAAGGCGCT
194 TTAAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGCT
* * *
84857 ACCCATTACATTACATAAGTGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
259 ACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
* * * *
84922 CTGGTTATGTTATCGTCGGATTTATAAGGCTCCATTAGCTTAATA-TTTGGTAACATTTTAGGCT
324 CCGATTATGTTATCGTCGGATTTATAAGGCTCCATCAGCTTAA-ACTTTGGTAACATTTTAGGCG
* * **
84986 TTACCTAATATGTTGATAATACTGATAACAAATTAAATAATTAACCTATTTTGTTTTCGTTGGAT
388 TTACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGAT
* * * ** * * * *
85051 TT-TAAGGCTCCATTAGCTTTAAAAAGGCGCTACCTATTAAATTACATAAGTGCTTCCTAATTTT
453 TTCTAAGGCTCCATCAGCTTTAAAAAGGCACTACATATTACGTTACATAAGCGCTACCTAATATG
* **** * *
85115 TTATTATTGTTGATAATGTTTCAAGTAATTAATC-GGTTATGTTATCTTCGGATTTCTAAGGCTT
518 TTATTATGGTTGATAACAAATCAAGTAATTAA-CAGGTTATGTTATCGTCGGATTTCTAAGGCTC
* * * *
85179 CATTAGCTTAATCTTTGGTAACATTTTAGGTGTTACCTAATATATTGATAATACTGATAACAAAT
582 CATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAAT
85244 TAAGTAATTAACCTATTTTGTTATCATCGGA
647 TAAGTAATTAACCTATTTTGTTATCATCGGA
*** * *
85275 TTTCTAAGGCTTTATCAACTTTAAAACATTGCT-CCGTATTACGTTACATAAGCGATACCTAATA
1 TTTCTAAGGCCCCATCAACTTTAAAA-AATGCTACC-TATTACGTTACATAAGCGCTACCTAATA
* * * * * * *
85339 TGTTATTATGATTGATAACAAATCTAGTAATTAACCGGTTTTGTTATCGTCGAATTTATATGGAT
64 TGTTATTATGGTTGATAACAAATCAAGTAATTAACCAGTTATGTTATCGTCGAATTTCTAAGGCT
* * ** * *
85404 CCAACAGCTTAAACTTTGGTAATATTTGAGATGTTACCTAATATATTGATAATATTGATAACAAA
129 CCATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAA
* *
85469 TTAATTAATTAACCTATTTTGTTATTTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGCT
194 TTAAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGCT
* *
85534 ACCTATTACTTTACATAAGTGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
259 ACCTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA
* * * * *
85599 CTGGTTATGTTATCGTTGGATTTATAAGGCTCCATCAGCTTAAACTTTGTTAACATTTGAGGCGT
324 CCGATTATGTTATCGTCGGATTTATAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGT
* * * *
85664 TACCTAATATGTTGATAATGCTAATAA-AAATTAAGTAATTAACCTATTTTCTTATTGTCAGATT
389 TACCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGATT
* * * * *
85728 TCT-ACGATCCCGTCAGCTTTATAAAGGCACTACCTATTACGTTACATAAGCGCTACCTAATATG
454 TCTAAGGCT-CCATCAGCTTTAAAAAGGCACTACATATTACGTTACATAAGCGCTACCTAATATG
* **** * * * * *
85792 TTATTATTGTTGATAATGTTTCAAGTAATTAACTGGTTATGTTATCTTTGTATTTCTAAGGTTCC
518 TTATTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGGATTTCTAAGGCTCC
* * * *
85857 ATCAGCTTAATCTTTGGTAACATTTTAGGTGTTACCTAATATGTTGATAATACTTATAGCAAATT
583 ATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATT
*
85922 AAGTAATTAACCTATTTTGTTATCGTCGGA
648 AAGTAATTAACCTATTTTGTTATCATCGGA
* **** * *
85952 TTTCTAAGG-CCCATCAGC-TTAAAACGCACTTCCTATTACGTTACATTAGCGCTACCTAATATG
1 TTTCTAAGGCCCCATCAACTTTAAAAAATGCTACCTATTACGTTACATAAGCGCTACCTAATATG
86015 TTATTATGGTTGATAA
66 TTATTATGGTTGATAA
86031 TGTTTCCAGT
Statistics
Matches: 1816, Mismatches: 249, Indels: 66
0.85 0.12 0.03
Matches are distributed among these distances:
663 166 0.09
664 34 0.02
665 2 0.00
666 372 0.20
667 4 0.00
668 1 0.00
670 1 0.00
671 1 0.00
673 1 0.00
674 97 0.05
675 329 0.18
676 45 0.02
677 732 0.40
678 25 0.01
679 6 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (677 bp):
TTTCTAAGGCCCCATCAACTTTAAAAAATGCTACCTATTACGTTACATAAGCGCTACCTAATATG
TTATTATGGTTGATAACAAATCAAGTAATTAACCAGTTATGTTATCGTCGAATTTCTAAGGCTCC
ATCAGCTTAAACTTTGGTAACATTTGAGGCGTTACCTAATATGTTGATAATACTGATAACAAATT
AAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGACGCTAC
CTATTACGTTACATAAGCGCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACC
GATTATGTTATCGTCGGATTTATAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTA
CCTAATATGTTGATAATACTGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGATTTC
TAAGGCTCCATCAGCTTTAAAAAGGCACTACATATTACGTTACATAAGCGCTACCTAATATGTTA
TTATGGTTGATAACAAATCAAGTAATTAACAGGTTATGTTATCGTCGGATTTCTAAGGCTCCATC
AGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATAACAAATTAAG
TAATTAACCTATTTTGTTATCATCGGA
Found at i:85520 original size:108 final size:108
Alignment explanation
Indices: 85330--85974 Score: 321
Period size: 108 Copynumber: 5.8 Consensus size: 108
85320 ACATAAGCGA
* ** * *
85330 TACCTAATATGTTATTATGATTGATAACAAATCT-AGTAATTAACCGGTTTTGTTATCGTCGAAT
1 TACCTAATATGTTATAATGATTGATAACAAAT-TAAGTAATTAACCTATTTTGTTATTGTCGGAT
* * * *
85394 TTATATGGATCCAACAGCTTAAACTTTGGTAATATTTGAGATGT
65 TTATAAGGCTCCATCAGCTTAAACTTTGCTAATATTTGAGATGT
* * *
85438 TACCTAATATATTGATAAT-ATTGATAACAAATTAATTAATTAACCTATTTTGTTATTTTCGGAT
1 TACCTAATATGTT-ATAATGATTGATAACAAATTAAGTAATTAACCTATTTTGTTATTGTCGGAT
* * * ** * *
85502 TTCTAAGGCCCCATCAGCTTTAAAAAGACGCTACCTATTACTTT-ACATAAGT
65 TTATAAGGCTCCATCAGC-TT---AA-AC-TTTGCTAATA-TTTGAGAT--GT
* * * * * * *
85554 GCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAATTAA-CTGGTTATGTTATCGTTGG
1 --TACCTAATATGTTATAATGATTGATAACAAATTAAGTAATTAACCT-ATTTTGTTATTGTCGG
* * **
85618 ATTTATAAGGCTCCATCAGCTTAAACTTTGTTAACATTTGAGGCGT
63 ATTTATAAGGCTCCATCAGCTTAAACTTTGCTAATATTTGAGATGT
* * * *
85664 TACCTAATATGTTGATAATG-CTAATAA-AAATTAAGTAATTAACCTATTTTCTTATTGTCAGAT
1 TACCTAATATGTT-ATAATGATTGATAACAAATTAAGTAATTAACCTATTTTGTTATTGTCGGAT
* * * * * ** * * * *
85727 TTCT-ACGATCCCGTCAGCTTTATAAAGGCACTACCTATTACGTTACATAAG-CGC
65 TTATAAGGCT-CCATCAGC--T-TAAA--C-TTTGCTAATA--TT---TGAGATGT
* *** * * *
85781 TACCTAATATGTTATTATTG-TTGATAA-TGTTTCAAGTAATTAA-CTGGTTATGTTATCT-TTG
1 TACCTAATATGTTA-TAATGATTGATAACAAATT-AAGTAATTAACCT-ATTTTGTTAT-TGTCG
* * * * * * * *
85842 TATTTCTAAGGTTCCATCAGCTTAATCTTTGGTAACATTTTAGGTGT
62 GATTTATAAGGCTCCATCAGCTTAAACTTTGCTAATATTTGAGATGT
* *
85889 TACCTAATATGTTGATAAT-ACTT-ATAGCAAATTAAGTAATTAACCTATTTTGTTATCGTCGGA
1 TACCTAATATGTT-ATAATGA-TTGATAACAAATTAAGTAATTAACCTATTTTGTTATTGTCGGA
*
85952 TTTCTAAGGC-CCATCAGCTTAAA
64 TTTATAAGGCTCCATCAGCTTAAA
85975 ACGCACTTCC
Statistics
Matches: 396, Mismatches: 99, Indels: 85
0.68 0.17 0.15
Matches are distributed among these distances:
106 3 0.01
107 52 0.13
108 132 0.33
109 19 0.05
110 8 0.02
111 3 0.01
112 12 0.03
113 9 0.02
114 10 0.03
115 8 0.02
116 4 0.01
117 36 0.09
118 96 0.24
119 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (108 bp):
TACCTAATATGTTATAATGATTGATAACAAATTAAGTAATTAACCTATTTTGTTATTGTCGGATT
TATAAGGCTCCATCAGCTTAAACTTTGCTAATATTTGAGATGT
Found at i:87880 original size:46 final size:46
Alignment explanation
Indices: 87830--88123 Score: 417
Period size: 46 Copynumber: 6.4 Consensus size: 46
87820 TAATATACAG
* * *
87830 TTATGTATTTTCATTTGTGGCATCCTTTCATGCCGATTATGCACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* *
87876 TTATGCATTTTCATTTATAGCATCCTTTCATGCCGATAATGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* * *
87922 TTATGCATTTTTATTTATGGCATCCTTTCATACCGATAATACACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* **
87968 TTATGTATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACTG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* *
88014 TTATGCATTTTTATTTATGACATCCTTTCATGCCGATAATGCACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
** * * *
88060 TTACACATTTTCATTTATGGCATTCTTTCATTCCGATAATGTACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
*
88106 ATATGCATTTTCATTTAT
1 TTATGCATTTTCATTTAT
88124 TCATTTATTT
Statistics
Matches: 217, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 217 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (46 bp):
TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
Found at i:93857 original size:46 final size:46
Alignment explanation
Indices: 93801--94092 Score: 422
Period size: 46 Copynumber: 6.3 Consensus size: 46
93791 TAATATACCG
* * * * *
93801 TTATGTATTTTAATTTGTGGCATCCTTTCATGCCGATTATGCATCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* ** *
93847 TTATGCATTTTCATTTATGGAATTATTTCATGCCGATAATACACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* * * *
93893 TTATGCATTTTTATTTATGGCATCCTTTCATACTGGTAATGCACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* *
93939 TTATGCATTTTCATTTATGGCATCCTTTTATGCCGATAATGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
* * *
93985 TTATTCATTTTCATTTATGGTATCCTTTCATGCCGATAATGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
94031 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
94077 TTATGCATTTTCATTT
1 TTATGCATTTTCATTT
94093 GTACCTTATT
Statistics
Matches: 217, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 217 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (46 bp):
TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCA
Found at i:97099 original size:23 final size:23
Alignment explanation
Indices: 97032--97114 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 23
97022 TATATAAAAA
* * **
97032 ATCAAAACATAATTCAGGTCAAAT
1 ATCAGAACA-AATCCAGGTCAGGT
*
97056 ATCATAACAGAATCCAGGTCAGGT
1 ATCAGAACA-AATCCAGGTCAGGT
* *
97080 ATTAGAACAAATCCATGTCAGGT
1 ATCAGAACAAATCCAGGTCAGGT
*
97103 ATCATAACAAAT
1 ATCAGAACAAAT
97115 TCAAATAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
23 23 0.47
24 26 0.53
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (23 bp):
ATCAGAACAAATCCAGGTCAGGT
Found at i:99498 original size:21 final size:19
Alignment explanation
Indices: 99460--99505 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
99450 AATTAATCCT
99460 ACTAAGTATTAAAGCTAAGA
1 ACTAA-TATTAAAGCTAAGA
99480 ACTAATATTAAGGAGCTAAGA
1 ACTAATATTAA--AGCTAAGA
99501 A-TAAT
1 ACTAAT
99506 GATTCAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTAATATTAAAGCTAAGA
Found at i:109702 original size:21 final size:19
Alignment explanation
Indices: 109664--109709 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
109654 AATTAATCCT
109664 ACTAAGTATTAAAGCTAAGA
1 ACTAA-TATTAAAGCTAAGA
109684 ACTAATATTAAGGAGCTAAGA
1 ACTAATATTAA--AGCTAAGA
109705 A-TAAT
1 ACTAAT
109710 GATTTAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTAATATTAAAGCTAAGA
Found at i:112697 original size:21 final size:21
Alignment explanation
Indices: 112672--112711 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
112662 ATTCATTTTA
*
112672 TTTATTTATTTGAGAATTATG
1 TTTATTTATTTGACAATTATG
112693 TTTATTTATTTGACAATTA
1 TTTATTTATTTGACAATTA
112712 CGACGCTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (21 bp):
TTTATTTATTTGACAATTATG
Found at i:114063 original size:44 final size:44
Alignment explanation
Indices: 114015--114124 Score: 184
Period size: 44 Copynumber: 2.5 Consensus size: 44
114005 ATGATTTCCA
*
114015 AAATAACGCATAATAAGGTTTTTCTAATCACTTCATTATTTCTG
1 AAATAACACATAATAAGGTTTTTCTAATCACTTCATTATTTCTG
*
114059 AAATAACACATAATAAGGTTTTTCTAATTACTTCATTATTTCTG
1 AAATAACACATAATAAGGTTTTTCTAATCACTTCATTATTTCTG
* *
114103 AAATAACTCATAATAAAGTTTT
1 AAATAACACATAATAAGGTTTT
114125 ATAAACGACG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (44 bp):
AAATAACACATAATAAGGTTTTTCTAATCACTTCATTATTTCTG
Found at i:115196 original size:31 final size:31
Alignment explanation
Indices: 115161--115268 Score: 82
Period size: 31 Copynumber: 3.5 Consensus size: 31
115151 AAAAATTTTG
115161 GGGATTAATTTAGAATGAAAGTCATAGTTTA
1 GGGATTAATTTAGAATGAAAGTCATAGTTTA
* * *
115192 GGGATGTAA-TT-GAA--ATATTCAAAAGTTT-
1 GGGAT-TAATTTAGAATGAAAGTC-ATAGTTTA
* *
115220 GAGGACTAATTTAGAATGACAGTCATAGTTTA
1 G-GGATTAATTTAGAATGAAAGTCATAGTTTA
* * *
115252 AGAATGAATTTAGAATG
1 GGGATTAATTTAGAATG
115269 GTTAAAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
28 8 0.14
29 11 0.19
30 6 0.10
31 26 0.45
32 7 0.12
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (31 bp):
GGGATTAATTTAGAATGAAAGTCATAGTTTA
Found at i:115244 original size:60 final size:61
Alignment explanation
Indices: 115127--115251 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 61
115117 TATATATATC
* * *
115127 GTTT-GGGATGAAATTGAAATATTAAAAAATTTTGGGGATTAATTTAGAATGAAAGTCATA
1 GTTTAGGGATGAAATTGAAATATTAAAAAAGTTTGAGGACTAATTTAGAATGAAAGTCATA
* * *
115187 GTTTAGGGATGTAATTGAAATATT-CAAAAGTTTGAGGACTAATTTAGAATGACAGTCATA
1 GTTTAGGGATGAAATTGAAATATTAAAAAAGTTTGAGGACTAATTTAGAATGAAAGTCATA
115247 GTTTA
1 GTTTA
115252 AGAATGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 40 0.69
61 18 0.31
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (61 bp):
GTTTAGGGATGAAATTGAAATATTAAAAAAGTTTGAGGACTAATTTAGAATGAAAGTCATA
Found at i:115286 original size:60 final size:59
Alignment explanation
Indices: 115138--115287 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 59
115128 TTTGGGATGA
* * * *
115138 AATTGAAATATTAAAAAATTTTGGGGATTAATTTAGAATGAAAGTCATAGTTTAGGGATGT
1 AATTGAAATATTCAAAAA-TTT-GGGACTAATTTAGAATGAAAGTCATAGTTTAAGAATGT
* *
115199 AATTGAAATATTCAAAAGTTTGAGGACTAATTTAGAATGACAGTCATAGTTTAAGAATG-
1 AATTGAAATATTCAAAAATTTG-GGACTAATTTAGAATGAAAGTCATAGTTTAAGAATGT
* *
115258 AATTTAGAATGGTT-AAAAATTTAGGGACTA
1 AATTGA-AAT-ATTCAAAAATTT-GGGACTA
115288 TTTTTTATGA
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
59 6 0.08
60 51 0.67
61 19 0.25
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (59 bp):
AATTGAAATATTCAAAAATTTGGGACTAATTTAGAATGAAAGTCATAGTTTAAGAATGT
Found at i:116087 original size:16 final size:15
Alignment explanation
Indices: 116066--116130 Score: 57
Period size: 16 Copynumber: 4.5 Consensus size: 15
116056 AAATGATATG
116066 AAATTAATGCTAATTA
1 AAATTAATG-TAATTA
116082 AAATTAAT-TAA-TA
1 AAATTAATGTAATTA
*
116095 AAA-TAAAGT-ATTA
1 AAATTAATGTAATTA
* *
116108 ATATTATTGTTAATTA
1 AAATTAATG-TAATTA
116124 AAATTAA
1 AAATTAA
116131 AAGATAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
12 4 0.11
13 10 0.26
14 6 0.16
15 1 0.03
16 17 0.45
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.40
Consensus pattern (15 bp):
AAATTAATGTAATTA
Found at i:117787 original size:3 final size:3
Alignment explanation
Indices: 117769--117827 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
117759 GAGTTATAAT
* * * *
117769 TTA TTA -TA TTA CTA TTA TTA TTA TTA ATA TTA TT- TT- TTA TCA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
117814 TTA TTA TTG TTA TT
1 TTA TTA TTA TTA TT
117828 TCCATATTAC
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
2 6 0.14
3 38 0.86
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:123113 original size:25 final size:25
Alignment explanation
Indices: 123079--123129 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
123069 AAGGGAAAGG
123079 CTTCAATTTGACCCGAACCCCATGA
1 CTTCAATTTGACCCGAACCCCATGA
* *
123104 CTTCAATTTGACCTGATCCCCATGA
1 CTTCAATTTGACCCGAACCCCATGA
123129 C
1 C
123130 CTACAAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.35, G:0.12, T:0.27
Consensus pattern (25 bp):
CTTCAATTTGACCCGAACCCCATGA
Found at i:128968 original size:22 final size:21
Alignment explanation
Indices: 128941--129019 Score: 78
Period size: 22 Copynumber: 3.9 Consensus size: 21
128931 TCGCCTGAAT
128941 AAAGAAAGAAAATAAAAAAATA
1 AAAGAAAGAAAATAAAAAAA-A
*
128963 AAAGAAAGAAAATAAGAAAGAA
1 AAAGAAAGAAAATAA-AAAAAA
*
128985 AAAG-AAG--AA-AAAGAAAA
1 AAAGAAAGAAAATAAAAAAAA
129002 AAAGAAA-ATAAATAAAAA
1 AAAGAAAGA-AAATAAAAA
129020 GGGGTTCAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
17 8 0.17
18 4 0.09
19 2 0.04
20 2 0.04
21 7 0.15
22 20 0.43
23 4 0.09
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (21 bp):
AAAGAAAGAAAATAAAAAAAA
Found at i:128992 original size:9 final size:8
Alignment explanation
Indices: 128941--129019 Score: 68
Period size: 9 Copynumber: 9.1 Consensus size: 8
128931 TCGCCTGAAT
128941 AAAGAAAGA
1 AAAGAAA-A
*
128950 AAATAAAA
1 AAAGAAAA
*
128958 AAATAAAA
1 AAAGAAAA
128966 GAAAGAAAA
1 -AAAGAAAA
*
128975 TAAGAAAGAA
1 AAAG-AA-AA
128985 AAAGAAGAA
1 AAAGAA-AA
128994 AAAGAAAA
1 AAAGAAAA
129002 AAAGAAAA
1 AAAGAAAA
*
129010 TAAATAAAA
1 -AAAGAAAA
129019 A
1 A
129020 GGGGTTCAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
8 23 0.38
9 33 0.54
10 5 0.08
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (8 bp):
AAAGAAAA
Found at i:130597 original size:3 final size:3
Alignment explanation
Indices: 130589--130637 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
130579 GGGTTAAAAT
* * * *
130589 TTA TTA TTA TTA TTA TTA CTA TTA TTT TTA TCA TTT TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
130636 TT
1 TT
130638 TACATATTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:131170 original size:18 final size:18
Alignment explanation
Indices: 131147--131376 Score: 146
Period size: 18 Copynumber: 13.0 Consensus size: 18
131137 TGCAATGAAA
131147 ATAAACTATAGTTTATAT
1 ATAAACTATAGTTTATAT
*
131165 ATAAACTATA---TA-CT
1 ATAAACTATAGTTTATAT
**
131179 AT-AGTTGATA-TTTATAT
1 ATAAACT-ATAGTTTATAT
131196 ATAAACTATATAGTTTATA-
1 ATAAAC--TATAGTTTATAT
* *
131215 ATGAACTATAGTTTACAT
1 ATAAACTATAGTTTATAT
* ** *
131233 ATGAACTATATGTAAAAACT
1 ATAAACTATA-GTTTATA-T
131253 ATATAACTATAGTTTATAT
1 ATA-AACTATAGTTTATAT
131272 ATAAACTATA----A-ACT
1 ATAAACTATAGTTTATA-T
*
131286 AT-AATTGATA-TTTATAT
1 ATAAACT-ATAGTTTATAT
131303 ATAAACTATATAGTTTATAT
1 ATAAAC--TATAGTTTATAT
*
131323 ATGAACTATAGTTTATAT
1 ATAAACTATAGTTTATAT
* *
131341 ATGAACTATAGTTTACAT
1 ATAAACTATAGTTTATAT
*
131359 ATAAACTATAGTTGATAT
1 ATAAACTATAGTTTATAT
131377 TTACATATGA
Statistics
Matches: 168, Mismatches: 22, Indels: 44
0.72 0.09 0.19
Matches are distributed among these distances:
13 6 0.04
14 13 0.08
15 2 0.01
16 2 0.01
17 17 0.10
18 75 0.45
19 19 0.11
20 27 0.16
21 7 0.04
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (18 bp):
ATAAACTATAGTTTATAT
Found at i:131305 original size:24 final size:24
Alignment explanation
Indices: 131252--131312 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
131242 ATGTAAAAAC
* *
131252 TATAT-AACTATAGTTTATATATA
1 TATATAAACTATAATTGATATATA
* *
131275 AACTATAAACTATAATTGATATTTA
1 TA-TATAAACTATAATTGATATATA
131300 TATATAAACTATA
1 TATATAAACTATA
131313 TAGTTTATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 1 0.03
24 14 0.45
25 16 0.52
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.43
Consensus pattern (24 bp):
TATATAAACTATAATTGATATATA
Found at i:131398 original size:17 final size:18
Alignment explanation
Indices: 131376--131409 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
131366 ATAGTTGATA
131376 TTTACATATGAACTAT-G
1 TTTACATATGAACTATAG
131393 TTTACATATGAACTATA
1 TTTACATATGAACTATA
131410 TATATAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (18 bp):
TTTACATATGAACTATAG
Found at i:131455 original size:24 final size:23
Alignment explanation
Indices: 131392--131477 Score: 74
Period size: 24 Copynumber: 3.8 Consensus size: 23
131382 TATGAACTAT
131392 GTTTACATATGAACTATATATATA
1 GTTTA-ATATGAACTATATATATA
** *
131416 AATT-ATAT-AA--A-CTATATA
1 GTTTAATATGAACTATATATATA
131434 GTTTACATATGAACTATATATATA
1 GTTTA-ATATGAACTATATATATA
*
131458 GTTTATTAGTGAACTATATA
1 GTTTAATA-TGAACTATATA
131478 AACTATTTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
18 8 0.17
19 1 0.02
20 4 0.08
21 4 0.08
22 4 0.08
23 3 0.06
24 24 0.50
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (23 bp):
GTTTAATATGAACTATATATATA
Found at i:131457 original size:42 final size:39
Alignment explanation
Indices: 131300--131451 Score: 143
Period size: 42 Copynumber: 3.8 Consensus size: 39
131290 TTGATATTTA
*
131300 TATATAAACTATATAGTTTATATATGAACTATAGTT-T-A-
1 TATATAAAC--TATAGTTTACATATGAACTATAGTTATAAT
* * *
131338 TATATGAACTATAGTTTACATATAAACTATAGTTGATATT
1 TATATAAACTATAGTTTACATATGAACTATAGTT-ATAAT
*
131378 TACATATGAACTAT-GTTTACATATGAACTATA-TATATAAAT
1 T--ATATAAACTATAGTTTACATATGAACTATAGT-TAT-AAT
131419 TATATAAACTATATAGTTTACATATGAACTATA
1 TATATAAAC--TATAGTTTACATATGAACTATA
131452 TATATAGTTT
Statistics
Matches: 96, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
36 23 0.24
38 9 0.09
39 7 0.07
40 4 0.04
41 24 0.25
42 29 0.30
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (39 bp):
TATATAAACTATAGTTTACATATGAACTATAGTTATAAT
Found at i:131486 original size:24 final size:25
Alignment explanation
Indices: 131431--131492 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
131421 TATAAACTAT
* *
131431 ATAGTTTACATA-TGAACTATATAT
1 ATAGTTTATATAGTGAACTATATAA
131455 ATAGTTTAT-TAGTGAACTATATAA
1 ATAGTTTATATAGTGAACTATATAA
131479 ACTA-TTTATATAGT
1 A-TAGTTTATATAGT
131493 ATACACTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 2 0.06
24 25 0.76
25 6 0.18
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (25 bp):
ATAGTTTATATAGTGAACTATATAA
Found at i:131550 original size:65 final size:63
Alignment explanation
Indices: 131481--131632 Score: 196
Period size: 65 Copynumber: 2.3 Consensus size: 63
131471 CTATATAAAC
* * * * *
131481 TATTTATATAGTATACACTATATATAAACTCTAGTTTATATTTGTATACTACATACTATAGTTGA
1 TATTTATATAGTATATACTATATATAAACTATAATTTATA--TATAAACTACATACTATAGTTGA
* * *
131546 TATTTATATATTATATATTATATATATAAACTATAATTTATATATAAACTATATACTATAGTTGA
1 TATTTATATAGTATATA--CTATATATAAACTATAATTTATATATAAACTACATACTATAGTTGA
131611 TATTTATATAGTATATACTATA
1 TATTTATATAGTATATACTATA
131633 GTTGATATTT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
63 4 0.05
65 51 0.68
67 20 0.27
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (63 bp):
TATTTATATAGTATATACTATATATAAACTATAATTTATATATAAACTACATACTATAGTTGA
Found at i:131561 original size:7 final size:7
Alignment explanation
Indices: 131545--131673 Score: 55
Period size: 7 Copynumber: 19.7 Consensus size: 7
131535 ACTATAGTTG
131545 ATAT-TT
1 ATATATT
131551 ATATATT
1 ATATATT
131558 ATATATT
1 ATATATT
131565 ATATA-T
1 ATATATT
* *
131571 ATAAACT
1 ATATATT
131578 ATA-ATT
1 ATATATT
131584 -TATA-T
1 ATATATT
* *
131589 ATAAACT
1 ATATATT
*
131596 ATATACT
1 ATATATT
*
131603 ATAGT-TG
1 ATA-TATT
131610 ATAT-TT
1 ATATATT
*
131616 ATATAGT
1 ATATATT
*
131623 ATATACT
1 ATATATT
*
131630 ATAGT-TG
1 ATA-TATT
131637 ATAT-TT
1 ATATATT
*
131643 ATATAGT
1 ATATATT
*
131650 ATATAAT
1 ATATATT
131657 ATA-ATT
1 ATATATT
*
131663 -TATACT
1 ATATATT
131669 ATATA
1 ATATA
131674 AATTCAAAGT
Statistics
Matches: 96, Mismatches: 16, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.05
6 31 0.32
7 58 0.60
8 2 0.02
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (7 bp):
ATATATT
Found at i:131568 original size:20 final size:20
Alignment explanation
Indices: 131545--131653 Score: 60
Period size: 20 Copynumber: 5.2 Consensus size: 20
131535 ACTATAGTTG
131545 ATATTTATATATTATATATT
1 ATATTTATATATTATATATT
* * *
131565 ATATATATAAACTATA-ATTT
1 ATATTTATATATTATATA-TT
* *
131585 ATATATAAACTATATACTATAGTT
1 ATATTTATA-TAT-TA-TATA-TT
* *
131609 GATATTTATATAGTATATACT
1 -ATATTTATATATTATATATT
* *
131630 ATAGTTGATAT-TTATATAGT
1 ATA-TTTATATATTATATATT
131650 ATAT
1 ATAT
131654 AATATAATTT
Statistics
Matches: 68, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
19 2 0.03
20 36 0.53
21 8 0.12
22 6 0.09
23 4 0.06
24 5 0.07
25 7 0.10
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (20 bp):
ATATTTATATATTATATATT
Found at i:131580 original size:27 final size:28
Alignment explanation
Indices: 131550--131673 Score: 81
Period size: 27 Copynumber: 4.7 Consensus size: 28
131540 AGTTGATATT
131550 TATATATTATATATTATATA-TATAAAC
1 TATATATTATATATTATATAGTATAAAC
* * *
131577 TATA-ATT-TATA-TATAAACTATATAC
1 TATATATTATATATTATATAGTATAAAC
* *
131602 TATAGT-TGATAT-TTATATAGTATATAC
1 TATA-TATTATATATTATATAGTATAAAC
*
131629 TATAGT-TGATAT-TTATATAGTATATAA-
1 TATA-TATTATATATTATATAGTATA-AAC
*
131656 TATA-ATT-TATACTATATA
1 TATATATTATATATTATATA
131674 AATTCAAAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
24 5 0.06
25 17 0.21
26 11 0.14
27 47 0.58
28 1 0.01
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (28 bp):
TATATATTATATATTATATAGTATAAAC
Found at i:131622 original size:15 final size:15
Alignment explanation
Indices: 131602--131649 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
131592 AACTATATAC
131602 TATAGTTGATATTTA
1 TATAGTTGATATTTA
131617 TATAG-T-ATA--TA
1 TATAGTTGATATTTA
131628 CTATAGTTGATATTTA
1 -TATAGTTGATATTTA
131644 TATAGT
1 TATAGT
131650 ATATAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
11 2 0.07
12 5 0.18
13 4 0.14
14 4 0.14
15 11 0.39
16 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TATAGTTGATATTTA
Found at i:131783 original size:18 final size:18
Alignment explanation
Indices: 131745--131799 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
131735 ATTTATATAG
*
131745 TATATACTACATATATTGTT
1 TATATA-TAC-TATATAGTT
131765 TATATATACTATATAGTT
1 TATATATACTATATAGTT
*
131783 TACATATGAACTATATA
1 TATATAT--ACTATATA
131800 TAAAAAACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 14 0.45
19 3 0.10
20 14 0.45
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.45
Consensus pattern (18 bp):
TATATATACTATATAGTT
Found at i:131871 original size:32 final size:31
Alignment explanation
Indices: 131804--131883 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
131794 TATATATAAA
* *
131804 AAACTATATATATAAAGTATATGGCATATAC
1 AAACTATATATATATAGTATATAGCATATAC
* *
131835 AAACTATATATTATATAGT-TATTAGTATATAT
1 AAACTATATA-TATATAGTATA-TAGCATATAC
*
131867 AAACTATACAGTATATA
1 AAACTATATA-TATATA
131884 TAAACTATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 12 0.29
32 29 0.71
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (31 bp):
AAACTATATATATATAGTATATAGCATATAC
Found at i:131933 original size:51 final size:50
Alignment explanation
Indices: 131810--131934 Score: 178
Period size: 50 Copynumber: 2.5 Consensus size: 50
131800 TAAAAAACTA
* ** *
131810 TATATATAAAGTATATGGCATATACAAACTATATATTATATAGTTATTAG
1 TATATATAAACTATACAGTATATACAAACTATATATTATATAGTTATTAG
* *
131860 TATATATAAACTATACAGTATATATAAACTATATGTTATATAGTTCATTAG
1 TATATATAAACTATACAGTATATACAAACTATATATTATATAGTT-ATTAG
*
131911 TATATATAAACTATACATTATATA
1 TATATATAAACTATACAGTATATA
131935 GTTCATTAGT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
50 39 0.58
51 28 0.42
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (50 bp):
TATATATAAACTATACAGTATATACAAACTATATATTATATAGTTATTAG
Found at i:131997 original size:35 final size:33
Alignment explanation
Indices: 131876--131998 Score: 201
Period size: 33 Copynumber: 3.7 Consensus size: 33
131866 TAAACTATAC
*
131876 AGTATATATAAACTATATGTTATATAGTTCATT
1 AGTATATATAAACTATATATTATATAGTTCATT
*
131909 AGTATATATAAACTATACATTATATAGTTCATT
1 AGTATATATAAACTATATATTATATAGTTCATT
131942 AGTATATATAAACTATATATTATATAGTTCATT
1 AGTATATATAAACTATATATTATATAGTTCATT
*
131975 AGTATATATATAACCTACATATTA
1 AGTATATATA-AA-CTATATATTA
131999 ATTTTTAATA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
33 73 0.87
34 2 0.02
35 9 0.11
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (33 bp):
AGTATATATAAACTATATATTATATAGTTCATT
Found at i:132426 original size:103 final size:100
Alignment explanation
Indices: 132283--132491 Score: 267
Period size: 103 Copynumber: 2.1 Consensus size: 100
132273 TTCATAAGTT
* * *
132283 TTCATCCTAAAAACCCTCATTTGATCTTCACAAACACCAAAACCCAAAACATTTCGTGTTTTTTC
1 TTCATCCCAAAAACCCTAATTTGATATTCACAAACACC-AAACCCAAAACATTTCGTGTTTTTT-
* * * *
132348 GATCAAACTCCCATAATTTCAACCCTTGTTCATCCGTA
64 GATCAAACACCCAAAAATTCAACCC-TGTTCATCCATA
* * *
132386 TTCATCCCAAAAACCCTAATTTGATATTCA-AAACACCCAAACCCAAACCATTTTGTGTTTTTTT
1 TTCATCCCAAAAACCCTAATTTGATATTCACAAACA-CCAAACCCAAAACATTTCGTGTTTTTTG
* *
132450 ATCAAACACCCAAAAATTCATCCCTGTTCATCCATT
65 ATCAAACACCCAAAAATTCAACCCTGTTCATCCATA
132486 TTCATC
1 TTCATC
132492 TGTGTTCATC
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
100 16 0.17
101 20 0.22
102 28 0.30
103 29 0.31
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (100 bp):
TTCATCCCAAAAACCCTAATTTGATATTCACAAACACCAAACCCAAAACATTTCGTGTTTTTTGA
TCAAACACCCAAAAATTCAACCCTGTTCATCCATA
Found at i:132491 original size:20 final size:20
Alignment explanation
Indices: 132466--132503 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
132456 CACCCAAAAA
132466 TTCATCCCTGTTCATCCATT
1 TTCATCCCTGTTCATCCATT
**
132486 TTCATCTGTGTTCATCCA
1 TTCATCCCTGTTCATCCA
132504 GTTCTTCCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.45
Consensus pattern (20 bp):
TTCATCCCTGTTCATCCATT
Found at i:132802 original size:6 final size:6
Alignment explanation
Indices: 132791--132944 Score: 87
Period size: 6 Copynumber: 25.8 Consensus size: 6
132781 CATCTTTTCT
* * * * * *
132791 AACCCG AACCCG AACCCA AACCAG AAACC- AAACCG AACCTG AACCTG
1 AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG
** * * * * * * *
132838 AACATG AAACCA AACCCA AACCCG AACCTG AAACCA AACCCG AACCCA
1 AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG AACCCG
* * * * * * *
132886 AACTCG AACCCG AACCTG AAACC- ATACCCA AACACG AACCTG AACCCA
1 AACCCG AACCCG AACCCG AACCCG A-ACCCG AACCCG AACCCG AACCCG
132934 AACCCG AACCC
1 AACCCG AACCC
132945 AATTTAAACC
Statistics
Matches: 110, Mismatches: 35, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
5 6 0.05
6 103 0.94
7 1 0.01
ACGTcount: A:0.44, C:0.41, G:0.10, T:0.05
Consensus pattern (6 bp):
AACCCG
Found at i:132931 original size:30 final size:29
Alignment explanation
Indices: 132791--132931 Score: 108
Period size: 30 Copynumber: 4.8 Consensus size: 29
132781 CATCTTTTCT
* * ** *
132791 AACCCGAACCCGAACCCAAACCAGAAACC
1 AACCCAAACACGAACCTGAACCTGAAACC
* * *
132820 AAACCGAAC-CTGAACCTGAACATGAAACC
1 AACCCAAACAC-GAACCTGAACCTGAAACC
*
132849 AAACCCAAACCCGAACCTGAAACC--AAACCC
1 -AACCCAAACACGAACCTG-AACCTGAAA-CC
* *
132879 GAACCCAAACTCGAACCCGAACCTGAAACC
1 -AACCCAAACACGAACCTGAACCTGAAACC
132909 ATACCCAAACACGAACCTGAACC
1 A-ACCCAAACACGAACCTGAACC
132932 CAAACCCGAA
Statistics
Matches: 91, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
28 1 0.01
29 30 0.33
30 53 0.58
31 7 0.08
ACGTcount: A:0.44, C:0.40, G:0.11, T:0.06
Consensus pattern (29 bp):
AACCCAAACACGAACCTGAACCTGAAACC
Found at i:132932 original size:36 final size:36
Alignment explanation
Indices: 132847--132918 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
132837 GAACATGAAA
* * *
132847 CCAAACCCAAACCCGAACCTGAAACCAAACCCGAAC
1 CCAAACTCGAACCCGAACCTGAAACCAAACCCAAAC
*
132883 CCAAACTCGAACCCGAACCTGAAACCATACCCAAAC
1 CCAAACTCGAACCCGAACCTGAAACCAAACCCAAAC
132919 ACGAACCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.43, C:0.43, G:0.08, T:0.06
Consensus pattern (36 bp):
CCAAACTCGAACCCGAACCTGAAACCAAACCCAAAC
Found at i:132972 original size:18 final size:18
Alignment explanation
Indices: 132949--133000 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
132939 GAACCCAATT
132949 TAAACCCGAATCTAAATC
1 TAAACCCGAATCTAAATC
* ** *
132967 TAAACCTGAGCCCAAATC
1 TAAACCCGAATCTAAATC
* *
132985 CAAACTCGAATCTAAA
1 TAAACCCGAATCTAAA
133001 CTATTCGAAA
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (18 bp):
TAAACCCGAATCTAAATC
Found at i:135456 original size:20 final size:20
Alignment explanation
Indices: 135424--135472 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
135414 CAATCGTTGG
* *
135424 TGCTTGATTTTGTTTTATAT
1 TGCTTGCTTTTGTTTGATAT
*
135444 TGTTTGCTTTTGTTTGATAT
1 TGCTTGCTTTTGTTTGATAT
135464 TGCTTGCTT
1 TGCTTGCTT
135473 CTACTTGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.10, C:0.08, G:0.18, T:0.63
Consensus pattern (20 bp):
TGCTTGCTTTTGTTTGATAT
Found at i:135580 original size:18 final size:18
Alignment explanation
Indices: 135557--135600 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
135547 ACCACTGATT
135557 GTATGCTTTCTTAATGCA
1 GTATGCTTTCTTAATGCA
135575 GTATGCTTTCTTAATGCA
1 GTATGCTTTCTTAATGCA
*
135593 GGATGCTT
1 GTATGCTT
135601 GCTGAATGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (18 bp):
GTATGCTTTCTTAATGCA
Done.