Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1996589
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 11
Found at i:1691483 original size:19 final size:19
Alignment explanation
Indices: 1691459--1691511 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
1691449 GTCCCCATTT
1691459 TTCGGTGAGTCACCACAAG
1 TTCGGTGAGTCACCACAAG
1691478 TTCGGTGAGTCACCACAAG
1 TTCGGTGAGTCACCACAAG
* *
1691497 TTCGATGACTCACCA
1 TTCGGTGAGTCACCA
1691512 AACTGCCACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (19 bp):
TTCGGTGAGTCACCACAAG
Found at i:1695281 original size:32 final size:31
Alignment explanation
Indices: 1695191--1695282 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
1695181 CAAAGTGAAT
*
1695191 ATTAATTTTTGTCGAACTATTATAAAATAATC
1 ATTAA-TTTTATCGAACTATTATAAAATAATC
* * * * *
1695223 GTTAAATTTATCAAATTGTTATAAAATAATC
1 ATTAATTTTATCGAACTATTATAAAATAATC
* *
1695254 ATTATCTTTTATCGAACTATTACAAAATA
1 ATTA-ATTTTATCGAACTATTATAAAATA
1695283 TTTACTATAT
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
31 24 0.52
32 22 0.48
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (31 bp):
ATTAATTTTATCGAACTATTATAAAATAATC
Found at i:1701573 original size:95 final size:97
Alignment explanation
Indices: 1701394--1701659 Score: 362
Period size: 95 Copynumber: 2.7 Consensus size: 97
1701384 CGTATACCCA
* * * **
1701394 GATTATAATATTATACAATAAAGTTTGGGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCGACT
1 GATTATAATATTATACAATAAAG-TTGAGTTGCCCCTCTAGAGCAATTGGTTAAATGCCCCGACT
*
1701459 TTATGGATAAGATTCAGCTAGCCTAATAAAGGT
65 TTATGGATAAGATTCAGCTAGCCTAATAAAGAT
* *
1701492 GATTATAATA-TA-A-AATAAAGCTTGAGTTACCCCTCTAGAGCAATTGGTTAAATGCCCCGGCT
1 GATTATAATATTATACAATAAAG-TTGAGTTGCCCCTCTAGAGCAATTGGTTAAATGCCCCGACT
*
1701554 TTATGGATAAGATTCAGCTAGCCTGATAAAGAT
65 TTATGGATAAGATTCAGCTAGCCTAATAAAGAT
*
1701587 GATTATAATATCTATACAATAATA-TTGAGATGCCCCTCTAGAGCAATTGGTTAAATGCCCC-AT
1 GATTATAATAT-TATACAATAA-AGTTGAGTTGCCCCTCTAGAGCAATTGGTTAAATGCCCCGA-
1701650 CTTTATGGAT
63 CTTTATGGAT
1701660 CCAGCTAGCC
Statistics
Matches: 149, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
95 82 0.55
96 1 0.01
97 4 0.03
98 56 0.38
99 5 0.03
100 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (97 bp):
GATTATAATATTATACAATAAAGTTGAGTTGCCCCTCTAGAGCAATTGGTTAAATGCCCCGACTT
TATGGATAAGATTCAGCTAGCCTAATAAAGAT
Found at i:1702864 original size:86 final size:86
Alignment explanation
Indices: 1702719--1702901 Score: 294
Period size: 86 Copynumber: 2.1 Consensus size: 86
1702709 GTCACTTGAA
* *
1702719 GAATATACCACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCATACT
1 GAATATACCACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACC
*
1702784 CGCTCAGGGGAACCACCTGAG
66 CGCTAAGGGGAACCACCTGAG
* * * * *
1702805 GAATATACCACATGGCTTTTCTGTGAAGGGGAGTCATCCAAAGATCATTTCACTTGGTTCAGACC
1 GAATATACCACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACC
1702870 CGCTAAGGGGAACCACCTGAG
66 CGCTAAGGGGAACCACCTGAG
1702891 GAATATACCAC
1 GAATATACCAC
1702902 TTGGATTTCC
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (86 bp):
GAATATACCACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACC
CGCTAAGGGGAACCACCTGAG
Found at i:1703132 original size:85 final size:85
Alignment explanation
Indices: 1702992--1703994 Score: 1133
Period size: 85 Copynumber: 11.8 Consensus size: 85
1702982 GAATTATTCG
* * *
1702992 CAGCATAGCTCAAGGCGAAAAGGG-TATCTGCCAA-CAA-ACCTTCGAGTTCGATTACATTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
1703054 TCAAAGGCATAAT-AAATTTA
66 TCAAAGGCAT-ATCAAATTTA
* *
1703074 CAGCATAGCTCAAGGCGAGAAGGACTATCTGTCAATAAAGACCTTCGAGTTTGATTACATTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
*
1703139 TCAAAGGCATATCAAACTTA
66 TCAAAGGCATATCAAATTTA
* * * * * *
1703159 CAACATAACTCAAGGCGATAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
* *
1703224 TCAAAGGCATATTAAATTTG
66 TCAAAGGCATATCAAATTTA
* * * * * * * *
1703244 CAGCATAGCTCAGGGTGTGAAGGG-TGTTCTCTCAACAAAATACCTTCGAGTTCGATTACATTTA
1 CAGCATAGCTCAAGGCGAGAAGGGCT-ATCTGTCAA-TAAAGACCTTCGAGTTCGATTACATTCA
* *
1703308 GCTCAAAGGTACATCAAATTTA
64 GCTCAAAGGCATATCAAATTTA
* * * * *
1703330 CAGCATAGCTCAAGGCGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAATTTGATTACATTCAG
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-TAAAGACCTTCGAGTTCGATTACATTCAG
* *
1703395 CTCAATGGCATATCAAAATTA
65 CTCAAAGGCATATCAAATTTA
* * * * * *
1703416 CAGTATAACTCAATGCGAGAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
*
1703481 TCAAAGGCATATCAAATTTT
66 TCAAAGGCATATCAAATTTA
* * * * * * * *
1703501 CAGCATATCTTAGGGTGTGAAGGGCTATCTGTCAACAAAATACCTTCGAGTTCGATTACATTTAG
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-TAAAGACCTTCGAGTTCGATTACATTCAG
*
1703566 CTCAAAGGCACATCAAATTTA
65 CTCAAAGGCATATCAAATTTA
* * * * *
1703587 CAGCATAGCTCAAAGCGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAG
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-TAAAGACCTTCGAGTTCGATTACATTCAG
*
1703652 CTCAAAGGCATATCAAAATTA
65 CTCAAAGGCATATCAAATTTA
* * * *
1703673 CAGTATAACTCAATGCGAGAAGGGTTATCTGTC-ATCAAAGACCTTCGAGTTCGATTACATTCAG
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAAT-AAAGACCTTCGAGTTCGATTACATTCAG
*
1703737 CTCAAAGGCATATCAAATTTG
65 CTCAAAGGCATATCAAATTTA
* * * *
1703758 TAGCATAACTC-AGGATGAGAAGGGTTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAG
1 CAGCATAGCTCAAGG-CGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAG
*
1703822 CTCAAAGGCATAGCAAATTTA
65 CTCAAAGGCATATCAAATTTA
* * * * * *
1703843 TAGCATAACTCAAGGCGAGAAGAGTTATCTGTCAA-CAA-ACCCTCGAGTTCGATTACATTCAGC
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
* * *
1703906 TCAAGGGTATGTCAAATTTA
66 TCAAAGGCATATCAAATTTA
* * * * * * * *
1703926 TAGCATAGCTCAAGGTGAGAAGGGCTATATGTCAACAAAAAAACTGTCGAGTTCGATTCCATTTA
1 CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-TAAAGACCT-TCGAGTTCGATTACATTCA
1703991 GCTC
64 GCTC
1703995 GATGACCTAT
Statistics
Matches: 782, Mismatches: 123, Indels: 27
0.84 0.13 0.03
Matches are distributed among these distances:
82 22 0.03
83 79 0.10
84 9 0.01
85 358 0.46
86 292 0.37
87 22 0.03
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (85 bp):
CAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGC
TCAAAGGCATATCAAATTTA
Found at i:1703484 original size:257 final size:256
Alignment explanation
Indices: 1703029--1703959 Score: 1318
Period size: 257 Copynumber: 3.6 Consensus size: 256
1703019 CTGCCAACAA
*
1703029 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATAAT-AAATTTACAGCATAGCTCAAGGCGAG
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCA-CATCAAATTTACAGCATAGCTCAAGGCGAG
* * * *
1703093 AAGGACTATCTGTCAA-TAAAGACCTTCGAGTTTGATTACATTCAGCTCAAAGGCATATCAAACT
65 AAGGGCTATCTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAAT
* *
1703157 TACAACATAACTCAAGGCGATAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCA
130 TACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCA
* * *
1703222 GCTCAAAGGCATATTAAATTTGCAGCATAGCTCAGGGTGTGAAGGGTGTTCTCTCAACAAAAT
195 GCTCAAAGGCATATCAAATTTGCAGCATAACTCAGGGTGTGAAGGGT-TTCTGTCAACAAAAT
* *
1703285 ACCTTCGAGTTCGATTACATTTAGCTCAAAGGTACATCAAATTTACAGCATAGCTCAAGGCGAGA
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCATAGCTCAAGGCGAGA
* * *
1703350 AGGGCTATTTGTCAACAAAAGACCTTCAAATTTGATTACATTCAGCTCAATGGCATATCAAAATT
66 AGGGCTATCTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAATT
* *
1703415 ACAGTATAACTCAATGCGAGAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAG
131 ACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAG
* * * *
1703480 CTCAAAGGCATATCAAATTTTCAGCATATCTTAGGGTGTGAAGGGCTATCTGTCAACAAAAT
196 CTCAAAGGCATATCAAATTTGCAGCATAACTCAGGGTGTGAAGGG-TTTCTGTCAACAAAAT
* *
1703542 ACCTTCGAGTTCGATTACATTTAGCTCAAAGGCACATCAAATTTACAGCATAGCTCAAAGCGAGA
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCATAGCTCAAGGCGAGA
*
1703607 AGGGCTATTTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAATT
66 AGGGCTATCTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAATT
* * *
1703672 ACAGTATAACTCAATGCGAGAAGGGTTATCTGTCA-TCAAAGACCTTCGAGTTCGATTACATTCA
131 ACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAGT-AAAGACCTTCAAGTTCGATTACATTCA
* * * * *
1703736 GCTCAAAGGCATATCAAATTTGTAGCATAACTCAGGATGAGAAGGGTTATCTGTCAA-TAAAG
195 GCTCAAAGGCATATCAAATTTGCAGCATAACTCAGGGTGTGAAGGGTT-TCTGTCAACAAAAT
* * * *
1703798 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATAGCAAATTTATAGCATAACTCAAGGCGAGA
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCATAGCTCAAGGCGAGA
* * * * * * * * *
1703863 AGAGTTATCTGTCAAC--AA-ACCCTCGAGTTCGATTACATTCAGCTCAAGGGTATGTCAAATTT
66 AGGGCTATCTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAATT
* * * * *
1703925 ATAGCATAGCTCAAGGTGAGAAGGGCTATATGTCA
131 ACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCA
1703960 ACAAAAAAAC
Statistics
Matches: 613, Mismatches: 57, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
253 65 0.11
254 2 0.00
255 2 0.00
256 149 0.24
257 394 0.64
258 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (256 bp):
ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCATAGCTCAAGGCGAGA
AGGGCTATCTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTCAAAGGCATATCAAAATT
ACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAG
CTCAAAGGCATATCAAATTTGCAGCATAACTCAGGGTGTGAAGGGTTTCTGTCAACAAAAT
Found at i:1703715 original size:342 final size:341
Alignment explanation
Indices: 1702992--1703994 Score: 1220
Period size: 342 Copynumber: 2.9 Consensus size: 341
1702982 GAATTATTCG
* * * * *
1702992 CAGCATAGCTCAAGGCGAAAAGGG-TATCTGCCAAC--AA-ACCTTCGAGTTCGATTACATTCAG
1 CAGCATAACTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCAAATTCGATTACATTCAG
* * **
1703053 CTCAAAGGCATAAT-AAATTTACAGCATAGCTCAAGGCGAGAAGGACTATCTGTCAATAAAGACC
66 CTCAAAGGCAT-ATCAAATTTACAGCATAACTCAATGCGAGAAGGGTTATCTGTCAATAAAGACC
* * * *
1703117 TTCGAGTTTGATTACATTCAGCTCAAAGGCATATCAAACTTACAACATAACTCAAGGCGAT-AAG
130 TTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTTCAGCATAACTCAAGGCG-TGAAG
** * * *
1703181 GGTTATCTGTCAGTAAAGACCTTCAAGTTCGATTACATTCAGCTCAAAGGCATATTAAATTTGCA
194 GGTTATCTGTCAACAAA-ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACA
* * * * * * *
1703246 GCATAGCTCAGGGTGTGAAGGG-TGTTCTCTCAACAAAATACCTTCGAGTTCGATTACATTTAGC
258 GCATAGCTCAAGGTGAGAAGGGCTATT-TGTCAACAAAAGACCTTCAAGTTCGATTACATTCAGC
* *
1703310 TCAAAGGTACATCAAATTTA
322 TCAAAGGCACATCAAAATTA
* * *
1703330 CAGCATAGCTCAAGGCGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAATTTGATTACATTCAG
1 CAGCATAACTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCAAATTCGATTACATTCAG
* * * *
1703395 CTCAATGGCATATCAAAATTACAGTATAACTCAATGCGAGAAGGGTTATCTGTCAGTAAAGACCT
66 CTCAAAGGCATATCAAATTTACAGCATAACTCAATGCGAGAAGGGTTATCTGTCAATAAAGACCT
* * * * *
1703460 TCAAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTTCAGCATATCTTAGGGTGTGAAGGG
131 TCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTTCAGCATAACTCAAGGCGTGAAGGG
* * *
1703525 CTATCTGTCAACAAAATACCTTCGAGTTCGATTACATTTAGCTCAAAGGCACATCAAATTTACAG
196 TTATCTGTCAAC-AAA-ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAG
* * *
1703590 CATAGCTCAAAGCGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAGTTTGATTACATTCAGCTC
259 CATAGCTCAAGGTGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAGTTCGATTACATTCAGCTC
*
1703655 AAAGGCATATCAAAATTA
324 AAAGGCACATCAAAATTA
* * * * * *
1703673 CAGTATAACTCAATGCGAGAAGGGTTATCTGTCATC-AAAGACCTTCGAGTTCGATTACATTCAG
1 CAGCATAACTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCAAATTCGATTACATTCAG
**
1703737 CTCAAAGGCATATCAAATTTGTAGCATAACTCAGGAT--GAGAAGGGTTATCTGTCAATAAAGAC
66 CTCAAAGGCATATCAAATTTACAGCATAACTCA--ATGCGAGAAGGGTTATCTGTCAATAAAGAC
* *
1703800 CTTCGAGTTCGATTACATTCAGCTCAAAGGCATAGCAAATTTAT-AGCATAACTCAAGGCGAGAA
129 CTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTT-TCAGCATAACTCAAGGCGTGAA
* * * * * *
1703864 GAGTTATCTGTCAAC-AAACCCTCGAGTTCGATTACATTCAGCTCAAGGGTATGTCAAATTTATA
193 GGGTTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACA
* * * * * *
1703928 GCATAGCTCAAGGTGAGAAGGGCTATATGTCAACAAAAAAACTGTCGAGTTCGATTCCATTTAGC
258 GCATAGCTCAAGGTGAGAAGGGCTATTTGTCAACAAAAGACCT-TCAAGTTCGATTACATTCAGC
1703993 TC
322 TC
1703995 GATGACCTAT
Statistics
Matches: 568, Mismatches: 85, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
338 23 0.04
339 87 0.15
340 21 0.04
341 5 0.01
342 284 0.50
343 143 0.25
344 5 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (341 bp):
CAGCATAACTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTCAAATTCGATTACATTCAG
CTCAAAGGCATATCAAATTTACAGCATAACTCAATGCGAGAAGGGTTATCTGTCAATAAAGACCT
TCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTTCAGCATAACTCAAGGCGTGAAGGG
TTATCTGTCAACAAAACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAGCA
TAGCTCAAGGTGAGAAGGGCTATTTGTCAACAAAAGACCTTCAAGTTCGATTACATTCAGCTCAA
AGGCACATCAAAATTA
Found at i:1705814 original size:6 final size:6
Alignment explanation
Indices: 1705803--1705830 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
1705793 GACTTGAATT
1705803 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1705831 TGTAATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:1706389 original size:19 final size:18
Alignment explanation
Indices: 1706365--1706432 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 18
1706355 TTTAGAATAT
1706365 ATAAAATTATAAAATTTTA
1 ATAAAA-TATAAAATTTTA
*
1706384 ATAAAATATATAAATTATA
1 ATAAAATATA-AAATTTTA
*
1706403 A-AAAAAATAAAATTTT-
1 ATAAAATATAAAATTTTA
*
1706419 -TAAAAGATAAAATT
1 ATAAAATATAAAATT
1706433 ACTAATATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.28
17 6 0.14
18 11 0.26
19 14 0.33
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (18 bp):
ATAAAATATAAAATTTTA
Found at i:1712431 original size:51 final size:51
Alignment explanation
Indices: 1712353--1712451 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
1712343 TCTTATTTGT
* *
1712353 CATGAATCCATGTCAAAAAAGTATGTAAAATTTTAGTACGTT-TATATGCTG
1 CATGAATCCATGTCAAAAAAGTATGTAAAATATTAATAC-TTCTATATGCTG
* ** *
1712404 CATGAATTCATGTCAAAGGAGTGTGTAAAATATTAATACTTCTATATG
1 CATGAATCCATGTCAAAAAAGTATGTAAAATATTAATACTTCTATATG
1712452 AGACATATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (51 bp):
CATGAATCCATGTCAAAAAAGTATGTAAAATATTAATACTTCTATATGCTG
Found at i:1736636 original size:24 final size:24
Alignment explanation
Indices: 1736604--1736660 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
1736594 ATGTCTATAA
1736604 GAAGTGCACCTGATGGAAGGAGGG
1 GAAGTGCACCTGATGGAAGGAGGG
1736628 GAAGTGCACCTGATGGAAGGAGGG
1 GAAGTGCACCTGATGGAAGGAGGG
*
1736652 GAAGAGCAC
1 GAAGTGCAC
1736661 GATTTGCTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.44, T:0.11
Consensus pattern (24 bp):
GAAGTGCACCTGATGGAAGGAGGG
Found at i:1744860 original size:28 final size:28
Alignment explanation
Indices: 1744814--1744868 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
1744804 CCAAAACCCA
1744814 CCAAATCGAAGTCTTGTTTAT-CTTAAAC
1 CCAAATCGAAGTCTTGTTT-TGCTTAAAC
*
1744842 CCAAATCTAAG-CTTAGTTTTGCTTAAA
1 CCAAATCGAAGTCTT-GTTTTGCTTAAA
1744869 AATCTACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (28 bp):
CCAAATCGAAGTCTTGTTTTGCTTAAAC
Found at i:1745378 original size:45 final size:45
Alignment explanation
Indices: 1745316--1745409 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
1745306 AACGAGGATA
* * *
1745316 TGGAGGGGCTGCTGGCAGTGCTGGAAGCTGCTGGAATTTACAACG
1 TGGAGGGGCTGCTGGCAGTGCTAGAAACTGATGGAATTTACAACG
* **
1745361 TGGAGGGGCTGCTGGCAGTGCTAGAAACTGATGGGATTTGTAACG
1 TGGAGGGGCTGCTGGCAGTGCTAGAAACTGATGGAATTTACAACG
1745406 TGGA
1 TGGA
1745410 ACTGCTGGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.21, C:0.15, G:0.40, T:0.23
Consensus pattern (45 bp):
TGGAGGGGCTGCTGGCAGTGCTAGAAACTGATGGAATTTACAACG
Found at i:1746007 original size:123 final size:124
Alignment explanation
Indices: 1745864--1746182 Score: 466
Period size: 123 Copynumber: 2.6 Consensus size: 124
1745854 AAATAAGTTT
* * *
1745864 TTCTTATTATGAACTTCTTC-TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTGGAA
1 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAA
* * * *
1745928 ATGTTGGTGCTGATCTATCTCCTTT-TGTGATAGAGTCGAGCAAAAGGTTGAACAAGCTC
66 ATGTTGATGCTGATCTATCT-CTTTCTGGGATAGAATCAAGCAAAAGGTTGAACAAGCTC
1745987 TTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAA
1 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG-A
* * * *
1746051 AAT-ATGATGCTGATTTATCTCTTTCTGGGATAGAATCAAGCAAAATGTTGAACAAGTTC
65 AATGTTGATGCTGATCTATCTCTTTCTGGGATAGAATCAAGCAAAAGGTTGAACAAGCTC
* *
1746110 TTCTCATTATGAACTTTTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGAAA
1 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAA
*
1746175 AAGTTGAT
66 ATGTTGAT
1746183 CCATAGAGTG
Statistics
Matches: 176, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
122 4 0.02
123 124 0.70
124 48 0.27
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (124 bp):
TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAA
ATGTTGATGCTGATCTATCTCTTTCTGGGATAGAATCAAGCAAAAGGTTGAACAAGCTC
Found at i:1747057 original size:22 final size:22
Alignment explanation
Indices: 1747000--1747057 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
1746990 AATAAAGCTT
* *
1747000 TCATATTTGAAAAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
*
1747022 TCATCTTTGGAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
1747044 TCATCTTTGAAGAG
1 TCATCTTTGAAGAG
1747058 TGTAGATGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATCTA
Found at i:1747511 original size:54 final size:54
Alignment explanation
Indices: 1747429--1747572 Score: 182
Period size: 54 Copynumber: 2.7 Consensus size: 54
1747419 TGGTTCGTAA
* * ** * * *
1747429 AACACATTCATCCTTACTTGTGATTTCTGCACAGATGTTTCGT-AAACATTTGAC
1 AACACATTCATCCTTTCCTGTGGCTTCTGCATAGATG-ATCGTAAAACATTCGAC
* *
1747483 AACACATTCATCATTTCCTGTGGCTTCTGCTTAGATGATCGTAAAACATTCGAC
1 AACACATTCATCCTTTCCTGTGGCTTCTGCATAGATGATCGTAAAACATTCGAC
*
1747537 AACATATTCATCCTTTCCTGTGGCTTCTGCATAGAT
1 AACACATTCATCCTTTCCTGTGGCTTCTGCATAGAT
1747573 TTCTGGTCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.05
54 73 0.95
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (54 bp):
AACACATTCATCCTTTCCTGTGGCTTCTGCATAGATGATCGTAAAACATTCGAC
Found at i:1753997 original size:14 final size:13
Alignment explanation
Indices: 1753978--1754051 Score: 51
Period size: 14 Copynumber: 5.4 Consensus size: 13
1753968 AAATATAATT
1753978 ATGCAAAGATGCAA
1 ATGCAAA-ATGCAA
*
1753992 ATGCAAAAATGAAA
1 ATGC-AAAATGCAA
* *
1754006 ATG-TAAATACAA
1 ATGCAAAATGCAA
* *
1754018 ACGTAAAAATGCAAAA
1 ATG-CAAAATGC--AA
1754034 ATGCAAAATGCAA
1 ATGCAAAATGCAA
1754047 ATGCA
1 ATGCA
1754052 TGTATGAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 11
0.70 0.14 0.17
Matches are distributed among these distances:
12 8 0.17
13 7 0.15
14 17 0.37
15 10 0.22
16 4 0.09
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.16
Consensus pattern (13 bp):
ATGCAAAATGCAA
Found at i:1757549 original size:45 final size:45
Alignment explanation
Indices: 1757492--1757586 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
1757482 GAACGAGGAT
* * *
1757492 GTGGAGGGGCTGCTGGCAGTGCTGGAAGCTGCTGGAATTTGCAAC
1 GTGGAGGGGCTGCTGGCAGTACTAGAAGCTGATGGAATTTGCAAC
* *
1757537 GTGGAGGGGCTGCTGGCAGTACTAGAAGCTGATGGGATTTGTAAC
1 GTGGAGGGGCTGCTGGCAGTACTAGAAGCTGATGGAATTTGCAAC
1757582 GTGGA
1 GTGGA
1757587 ACTGTTGGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.20, C:0.15, G:0.42, T:0.23
Consensus pattern (45 bp):
GTGGAGGGGCTGCTGGCAGTACTAGAAGCTGATGGAATTTGCAAC
Found at i:1758550 original size:26 final size:28
Alignment explanation
Indices: 1758521--1758603 Score: 80
Period size: 31 Copynumber: 2.9 Consensus size: 28
1758511 GTAAAAATAG
1758521 TTAAATTTTA-AT-ATATTAATTTAATT
1 TTAAATTTTAGATAATATTAATTTAATT
1758547 TTAAATTTTAGATAAAATATTAATTTAATCT
1 TTAAATTTTAGAT--AATATTAATTTAAT-T
** *
1758578 TTGTATTTAAGATAAAATATTAATTT
1 TTAAATTTTAGAT--AATATTAATTT
1758604 TATCTCTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 10 0.20
27 2 0.04
30 13 0.27
31 24 0.49
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTAAATTTTAGATAATATTAATTTAATT
Found at i:1758594 original size:31 final size:31
Alignment explanation
Indices: 1758533--1758615 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 31
1758523 AAATTTTAAT
*
1758533 ATATTAATTTAAT-TTTAAATTTTAGATAAA
1 ATATTAATTTAATCTTTAAATTTAAGATAAA
**
1758563 ATATTAATTTAATCTTTGTATTTAAGATAAA
1 ATATTAATTTAATCTTTAAATTTAAGATAAA
* *
1758594 ATATTAATTTTATCTCTAAATT
1 ATATTAATTTAATCTTTAAATT
1758616 CAATCAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 13 0.29
31 32 0.71
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (31 bp):
ATATTAATTTAATCTTTAAATTTAAGATAAA
Found at i:1762021 original size:14 final size:13
Alignment explanation
Indices: 1762001--1762051 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 13
1761991 TAAGAGTAAT
1762001 TTTTTTTCTTCTC
1 TTTTTTTCTTCTC
1762014 TGTTTTTTCTTCT-
1 T-TTTTTTCTTCTC
*
1762027 TTTTTTTCTTTTC
1 TTTTTTTCTTCTC
1762040 TATTTTTT-TTCT
1 T-TTTTTTCTTCT
1762052 GAATCTCGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
12 10 0.30
13 6 0.18
14 17 0.52
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTTTTTCTTCTC
Found at i:1762036 original size:26 final size:25
Alignment explanation
Indices: 1762000--1762051 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
1761990 CTAAGAGTAA
*
1762000 TTTTTTTTCTTCTCTGTTTTTTCTTC
1 TTTTTTTTCTTCTCTATTTTTT-TTC
*
1762026 TTTTTTTTCTTTTCTATTTTTTTTC
1 TTTTTTTTCTTCTCTATTTTTTTTC
1762051 T
1 T
1762052 GAATCTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (25 bp):
TTTTTTTTCTTCTCTATTTTTTTTC
Found at i:1762040 original size:28 final size:26
Alignment explanation
Indices: 1762000--1762051 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
1761990 CTAAGAGTAA
*
1762000 TTTTTTTTCTTCTCTGTTTTTTCTTC
1 TTTTTTTTCTTCTATGTTTTTTCTTC
*
1762026 TTTTTTTTCTTTTCTATTTTTTTTCT
1 TTTTTTTTC--TTCTATGTTTTTTCT
1762052 GAATCTCGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
28 13 0.59
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.81
Consensus pattern (26 bp):
TTTTTTTTCTTCTATGTTTTTTCTTC
Found at i:1762670 original size:3 final size:3
Alignment explanation
Indices: 1762658--1762697 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
1762648 TAAATATTTT
1762658 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1762698 GTTAATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1763412 original size:36 final size:35
Alignment explanation
Indices: 1763362--1763552 Score: 143
Period size: 36 Copynumber: 5.7 Consensus size: 35
1763352 CAATTGTTTA
*
1763362 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACAATCTCAAGAGAGA-AAAATT
* ** *
1763398 TGTTTCAAGGGAAACAATCTCAA-AG-G---TGTA
1 TGTTTCAAGAGAAACAATCTCAAGAGAGAAAAATT
* * *
1763428 TGTTTCAAGAGAAACTATTTTAAGAGAGATAAAATT
1 TGTTTCAAGAGAAACAATCTCAAGAGAGA-AAAATT
***
1763464 TGTTTCAATG-GAAACAATCTCAA-AG-G-TGTA-T
1 TGTTTCAA-GAGAAACAATCTCAAGAGAGAAAAATT
** *
1763495 T-TTTCAAGAGAAACTGTCTCAAGTGAGACAAAATT
1 TGTTTCAAGAGAAACAATCTCAAGAGAGA-AAAATT
1763530 TGTTTCAAGAGAAACAATCTCAA
1 TGTTTCAAGAGAAACAATCTCAA
1763553 AGCTTTATCA
Statistics
Matches: 115, Mismatches: 26, Indels: 28
0.68 0.15 0.17
Matches are distributed among these distances:
29 1 0.01
30 37 0.32
31 5 0.04
32 3 0.03
34 3 0.03
35 6 0.05
36 59 0.51
37 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (35 bp):
TGTTTCAAGAGAAACAATCTCAAGAGAGAAAAATT
Found at i:1763413 original size:66 final size:66
Alignment explanation
Indices: 1763297--1763554 Score: 349
Period size: 66 Copynumber: 3.9 Consensus size: 66
1763287 AGGGAATATT
* * * * * * ** *
1763297 TGTTTCAAGAGAAACTGTC-CAAGCGAGATAAAATTTATTTCAAAAAAAACAATCTCAATTGTTT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTGT
1763361 A
66 A
*
1763362 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTGT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTGT
1763427 A
66 A
* * *
1763428 TGTTTCAAGAGAAACTATTTTAAGAGAGATAAAATTTGTTTCAATG-GAAACAATCTCAAAGGTG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAA-GAGAAACAATCTCAAAGGTG
1763492 TA
65 TA
* * *
1763494 TTTTTCAAGAGAAACTGTCTCAAGTGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAG
1763555 CTTTATCAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
65 19 0.11
66 151 0.88
67 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (66 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTGT
A
Found at i:1763432 original size:30 final size:30
Alignment explanation
Indices: 1763398--1763508 Score: 89
Period size: 30 Copynumber: 3.5 Consensus size: 30
1763388 AGACAAAATT
*
1763398 TGTTTCAAGGGAAACAATCTCAAAGGTGTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTGTA
* * * * *
1763428 TGTTTCAAGAGAAACTATTTTAAGAGAGATAAAATT
1 TGTTTCAAGAGAAACAATCTCAA-AG-G-T---GTA
1763464 TGTTTCAATG-GAAACAATCTCAAAGGTGTA
1 TGTTTCAA-GAGAAACAATCTCAAAGGTGTA
*
1763494 TTTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
1763509 TGTCTCAAGT
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
29 1 0.02
30 32 0.52
31 2 0.03
32 1 0.02
33 2 0.03
34 1 0.02
35 2 0.03
36 19 0.31
37 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.31
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTGTA
Found at i:1763734 original size:65 final size:66
Alignment explanation
Indices: 1763648--1763814 Score: 180
Period size: 67 Copynumber: 2.5 Consensus size: 66
1763638 TTGAGAACAA
* ** * * *
1763648 TCTCAAGTGAGA-TAAATTTTGTTTCAAGTGAAACAATTTCAAAAT-TTATATTTC-TAGGGAA-
1 TCTCAAGTGAGACGAAA-TTTGTTTCAAGAAAAACAATCTC-AAATGTT-TATGTCTTAAGGAAG
1763709 ACTG
63 ACTG
* *
1763713 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAACAATCTCAAATGTTTGTGTCTTAAGGAAGAC
1 TCTCAAGTGAGACGAAATTTG-TTTCAAGAAAAACAATCTCAAATGTTTATGTCTTAAGGAAGAC
1763778 TG
65 TG
*
1763780 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAAC
1 TCTCAAGTGAGACGAAATTTG-TTTCAAGAAAAAC
1763815 TGTCTCAAGC
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
65 24 0.27
66 26 0.29
67 39 0.44
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (66 bp):
TCTCAAGTGAGACGAAATTTGTTTCAAGAAAAACAATCTCAAATGTTTATGTCTTAAGGAAGACT
G
Found at i:1763755 original size:37 final size:36
Alignment explanation
Indices: 1763713--1763861 Score: 111
Period size: 37 Copynumber: 4.3 Consensus size: 36
1763703 AGGGAAACTG
1763713 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAACAA
1 TCTCAAGTGAGACG-AATTTGTTTTTAAGAAAAACAA
* * * * **
1763750 TCTC-A---A-ATG--TTTGTGTCTTAAGGAAGACTG
1 TCTCAAGTGAGACGAATTTGT-TTTTAAGAAAAACAA
**
1763780 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAACTG
1 TCTCAAGTGAGACG-AATTTGTTTTTAAGAAAAACAA
**
1763817 TCTCAAGCAAGAC-AATTT-TTTTTAAG-AAAACAA
1 TCTCAAGTGAGACGAATTTGTTTTTAAGAAAAACAA
1763850 TCTCAAGTGAGA
1 TCTCAAGTGAGA
1763862 TCAATTTTGT
Statistics
Matches: 87, Mismatches: 16, Indels: 22
0.70 0.13 0.18
Matches are distributed among these distances:
29 5 0.06
30 14 0.16
31 1 0.01
32 2 0.02
33 16 0.18
34 9 0.10
35 7 0.08
36 1 0.01
37 27 0.31
38 5 0.06
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (36 bp):
TCTCAAGTGAGACGAATTTGTTTTTAAGAAAAACAA
Found at i:1763867 original size:34 final size:34
Alignment explanation
Indices: 1763780--1763869 Score: 101
Period size: 33 Copynumber: 2.6 Consensus size: 34
1763770 AGGAAGACTG
**
1763780 TCTCAAGTGAGACGAAATTTGTTTTTAAGAAAAACTG
1 TCTCAAGTGAGAC--AATTT-TTTTTAAGAAAAACAA
**
1763817 TCTCAAGCAAGACAATTTTTTTTAAG-AAAACAA
1 TCTCAAGTGAGACAATTTTTTTTAAGAAAAACAA
1763850 TCTCAAGTGAGATCAATTTT
1 TCTCAAGTGAGA-CAATTTT
1763870 GTTTCAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
33 15 0.33
34 15 0.33
35 5 0.11
37 11 0.24
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (34 bp):
TCTCAAGTGAGACAATTTTTTTTAAGAAAAACAA
Found at i:1766544 original size:23 final size:23
Alignment explanation
Indices: 1766513--1766557 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
1766503 GACCACATAT
1766513 GTTTACACCGAAGTGCCATATAG
1 GTTTACACCGAAGTGCCATATAG
*
1766536 GTTTGCACCGAAGTGCCATATA
1 GTTTACACCGAAGTGCCATATA
1766558 ATTGTCCCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
GTTTACACCGAAGTGCCATATAG
Found at i:1767584 original size:19 final size:18
Alignment explanation
Indices: 1767560--1767606 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
1767550 CTCATGGGAC
*
1767560 ACACATAATATCACATGTA
1 ACACATAA-ATCACATATA
*
1767579 ACACATACAATCACATATG
1 ACACATA-AATCACATATA
1767598 ACACATAAA
1 ACACATAAA
1767607 AATCATATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 22 0.88
20 1 0.04
ACGTcount: A:0.51, C:0.23, G:0.04, T:0.21
Consensus pattern (18 bp):
ACACATAAATCACATATA
Found at i:1773577 original size:3 final size:3
Alignment explanation
Indices: 1773569--1773597 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1773559 TAAATATTGT
1773569 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1773598 GTTAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1777115 original size:2 final size:2
Alignment explanation
Indices: 1777108--1777136 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1777098 ACATACATAC
1777108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1777137 GTTAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1781871 original size:43 final size:44
Alignment explanation
Indices: 1781795--1781891 Score: 117
Period size: 43 Copynumber: 2.2 Consensus size: 44
1781785 GCTAAAGTTC
1781795 GCGGCGTTTGTTAACGAAAAATGCCGCAATAGGTGA-CGATATATA
1 GCGGCGTTTGTTAAC-AAAAATGCCGCAATAGGT-ATCGATATATA
* * * * *
1781840 GCGGCGTTTGTTGA-AAAAATGCCGTAGTAGGTATTGATATTTA
1 GCGGCGTTTGTTAACAAAAATGCCGCAATAGGTATCGATATATA
1781883 GCGGCGTTT
1 GCGGCGTTT
1781892 TGCTTACAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 32 0.70
45 13 0.28
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (44 bp):
GCGGCGTTTGTTAACAAAAATGCCGCAATAGGTATCGATATATA
Found at i:1781942 original size:41 final size:42
Alignment explanation
Indices: 1781880--1781976 Score: 133
Period size: 41 Copynumber: 2.3 Consensus size: 42
1781870 GTATTGATAT
* **
1781880 TTAGCGGCGTTTTGCTTACAAACGCCACAATAGGTGTTGTTG
1 TTAGCGGCGTTTTCCCCACAAACGCCACAATAGGTGTTGTTG
* *
1781922 -TAGCGGCGTTTTCCCCACAAACGTCGCAATAGGTGTTGTTG
1 TTAGCGGCGTTTTCCCCACAAACGCCACAATAGGTGTTGTTG
1781963 TTTAGCGGCGTTTT
1 -TTAGCGGCGTTTT
1781977 TAAACAAGCG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 36 0.75
43 12 0.25
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.34
Consensus pattern (42 bp):
TTAGCGGCGTTTTCCCCACAAACGCCACAATAGGTGTTGTTG
Found at i:1790191 original size:19 final size:17
Alignment explanation
Indices: 1790151--1790184 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1790141 TTTTTCCAAT
*
1790151 TAAATATATATTTTTAA
1 TAAATATATATTTTGAA
1790168 TAAATATATTATTTTGA
1 TAAATATA-TATTTTGA
1790185 GTCAAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TAAATATATATTTTGAA
Found at i:1790397 original size:16 final size:16
Alignment explanation
Indices: 1790373--1790412 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
1790363 ATCCACTATA
*
1790373 AATGGTTCCATCATCC
1 AATGCTTCCATCATCC
1790389 AATGCTTCCATCATCC
1 AATGCTTCCATCATCC
1790405 AATGCTTC
1 AATGCTTC
1790413 ACACAATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.25, C:0.33, G:0.10, T:0.33
Consensus pattern (16 bp):
AATGCTTCCATCATCC
Found at i:1791256 original size:39 final size:39
Alignment explanation
Indices: 1791213--1791297 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 39
1791203 TATAATAAAT
* *
1791213 TATTAATTTTGATAATTAAATTAATAAA-ATTACTTACAA
1 TATTAATTATGATAATTAAATT-ATAAATATTAATTACAA
* * *
1791252 TATTAATTATGATTATTATATTATAAATATTAATTATAA
1 TATTAATTATGATAATTAAATTATAAATATTAATTACAA
1791291 TCATTAA
1 T-ATTAA
1791298 ATTAATTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
38 5 0.13
39 29 0.74
40 5 0.13
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (39 bp):
TATTAATTATGATAATTAAATTATAAATATTAATTACAA
Found at i:1791296 original size:13 final size:12
Alignment explanation
Indices: 1791231--1791297 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
1791221 TTGATAATTA
*
1791231 AATTAATAAAATT
1 AATT-ATAATATT
* *
1791244 ACTTACAATATT
1 AATTATAATATT
*
1791256 AATTATGATTATT
1 AATTAT-AATATT
1791269 ATATTATAAATATT
1 A-ATTAT-AATATT
1791283 AATTATAATCATT
1 AATTATAAT-ATT
1791296 AA
1 AA
1791298 ATTAATTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
12 13 0.30
13 19 0.44
14 11 0.26
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (12 bp):
AATTATAATATT
Found at i:1791296 original size:27 final size:27
Alignment explanation
Indices: 1791250--1791301 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1791240 AATTACTTAC
* * *
1791250 AATATTAATTATGATTATTATATTATA
1 AATATTAATTATAATCATTAAATTATA
1791277 AATATTAATTATAATCATTAAATTA
1 AATATTAATTATAATCATTAAATTA
1791302 ATTTTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
AATATTAATTATAATCATTAAATTATA
Found at i:1793829 original size:46 final size:46
Alignment explanation
Indices: 1793751--1793922 Score: 152
Period size: 46 Copynumber: 3.8 Consensus size: 46
1793741 AGACAACATA
* * * *
1793751 AGATGAAAAGTCTCGATTA-AGTTTCGGTTTAGAGAAGATGGACAAG
1 AGATGAATAGTCTCGGTTAGA-TTTAGGGTTAGAGAAGATGGACAAG
* * *
1793797 AGATGAATAGTCTCGGTTAGATTTAGGGTTAGAGAAGTTGAATAAG
1 AGATGAATAGTCTCGGTTAGATTTAGGGTTAGAGAAGATGGACAAG
* * * * *
1793843 AGATAAATATTCTCGGTTAGACTTAGGGTTAGAG-AGGT-GAGCAAA
1 AGATGAATAGTCTCGGTTAGATTTAGGGTTAGAGAAGATGGA-CAAG
* * ** *
1793888 ACATGAGTAGTCTTAGTTAAATTTAGGGTTAGAGA
1 AGATGAATAGTCTCGGTTAGATTTAGGGTTAGAGA
1793923 GATCAACATA
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
44 1 0.01
45 31 0.31
46 68 0.67
47 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.29
Consensus pattern (46 bp):
AGATGAATAGTCTCGGTTAGATTTAGGGTTAGAGAAGATGGACAAG
Found at i:1794948 original size:132 final size:131
Alignment explanation
Indices: 1794765--1795266 Score: 673
Period size: 132 Copynumber: 3.8 Consensus size: 131
1794755 ATAATTTTAA
* * * *
1794765 GAGAGAAAATGATAATATCGAATTATTTTCAATCGAGAATAAATGACCTCTCACGCCTTAAAGCA
1 GAGAGAAAAAGATAATATC-AATTATTTCCAATCGAGAATAAAAGACCTCTCATGCCTTAAAGCA
* **
1794830 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTTCATCTTAAAAATTCAATATCGAT
65 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCATCTTAAAAATTCAATATTAAT
1794895 TC
130 TC
* * * * * * *
1794897 GAGTGAAAACGATGATATCTAATGATTTCCGATTGAGAATAAATGACCTCTCATGCCTTAAAGCA
1 GAGAGAAAAAGATAATATC-AATTATTTCCAATCGAGAATAAAAGACCTCTCATGCCTTAAAGCA
* * * *
1794962 GTCATTTATTACTCCAATCGAAATGAAGAGCTATCACCATTCCTTCTTAAAAATTCAATATTAAT
65 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCATCTTAAAAATTCAATATTAAT
1795027 TC
130 TC
* * *
1795029 AAGAGAAAAAGATAATATCAAATTATTTCCAATCGTGAATAAAAGACCTCTCATACCTTAAAGCA
1 GAGAGAAAAAGATAATATC-AATTATTTCCAATCGAGAATAAAAGACCTCTCATGCCTTAAAGCA
* * * *
1795094 GTCATTTATTACTCCAATCGAAATGAAGAAATGTCACTATTCCGTCTTAAAAA-TCAATATTAAT
65 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCATCTTAAAAATTCAATATTAAT
1795158 TC
130 TC
* * * ** *
1795160 GAGAGAAAATGGTAATATCAATTTTTTTCCAATCGAGAATAAAAGACCTCAAATTCCTTAAAGCA
1 GAGAGAAAAAGATAATATCAA-TTATTTCCAATCGAGAATAAAAGACCTCTCATGCCTTAAAGCA
*
1795225 ATCATTTATTACTCCAATCGAAATGAAGAGATATTACTATTC
65 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTC
1795267 TCAATATTGA
Statistics
Matches: 325, Mismatches: 44, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
130 2 0.01
131 105 0.32
132 218 0.67
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.31
Consensus pattern (131 bp):
GAGAGAAAAAGATAATATCAATTATTTCCAATCGAGAATAAAAGACCTCTCATGCCTTAAAGCAA
TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCATCTTAAAAATTCAATATTAATT
C
Found at i:1797265 original size:7 final size:7
Alignment explanation
Indices: 1797253--1797289 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
1797243 TGGTGGTAAC
1797253 TAGGGTT
1 TAGGGTT
1797260 TAGGGTT
1 TAGGGTT
*
1797267 TAAGGTT
1 TAGGGTT
1797274 TAGGGTT
1 TAGGGTT
1797281 TAGGGTT
1 TAGGGTT
1797288 TA
1 TA
1797290 ATTATCATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:1797432 original size:41 final size:41
Alignment explanation
Indices: 1797387--1797467 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
1797377 CACATGAACG
* * * * *
1797387 CATCTTGCCCGAAGGTCTTATAAATGGCCCGAAGGACTTAT
1 CATCTTGCCCGAAAGACTAATAAATGACCCAAAGGACTTAT
* *
1797428 CATCTTGCTCGAAAGACTAATAGATGACCCAAAGGACTTA
1 CATCTTGCCCGAAAGACTAATAAATGACCCAAAGGACTTA
1797468 CTAATTTTGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (41 bp):
CATCTTGCCCGAAAGACTAATAAATGACCCAAAGGACTTAT
Found at i:1797837 original size:202 final size:203
Alignment explanation
Indices: 1797387--1797865 Score: 712
Period size: 203 Copynumber: 2.4 Consensus size: 203
1797377 CACATGAACG
* ** * *
1797387 CATCTTGCCCGAAGGTCTTATAAATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTAATAGA
1 CATCCTGCCCGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTTGCTCGAAAGGCTAATAGA
* * **
1797452 TGACCCAAAGGACTTACTAATTTTGGATGTAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTC
66 TGACCCGAAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTC
* *
1797517 TTATTTTTCAAAAACTTCAATTTTCAGATTTAAATGAGAAACTTTTCTTATTTTTCAAAAGAACA
131 TTACTTTTCAAAAACTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCAAAAGAACA
*
1797582 TGTGAAAA
196 CGTGAAAA
** * * *
1797590 -ATCCCAACCTGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTTGCTTGAAAGGCTTATAG
1 CAT-CCTGCCCGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTTGCTCGAAAGGCTAATAG
1797654 ATGACCCGAAGGACTTACCAATTTTGGAAATAG-TTACTAGGTAAGAAACTTTGAAAAATCATTT
65 ATGACCCGAAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTG-AAAATCATTT
** *
1797718 TCTTACTTTTCAAAATTTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAA-AA
129 TCTTACTTTTCAAAAACTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCAAAAGAA
1797782 CACGTGAAAA
194 CACGTGAAAA
* * *
1797792 CATCCTGCCCGAAAGTCTTATGGATGGCTCGAAGAACTGATCATCTTGCTCGAAAGGCTAATAGA
1 CATCCTGCCCGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTTGCTCGAAAGGCTAATAGA
1797857 TGACCCGAA
66 TGACCCGAA
1797866 TGATTTACTC
Statistics
Matches: 245, Mismatches: 28, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
202 96 0.39
203 149 0.61
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (203 bp):
CATCCTGCCCGAAGGTCTTATGGATGGCTCGAAGGACTTATCATCTTGCTCGAAAGGCTAATAGA
TGACCCGAAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTC
TTACTTTTCAAAAACTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCAAAAGAACA
CGTGAAAA
Found at i:1798396 original size:42 final size:42
Alignment explanation
Indices: 1798295--1798402 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
1798285 GCCTGAAGGT
* * * *
1798295 CTTATGGATGGCCCGAAAGACTTA-TCATCTTGCTCGAAAGG
1 CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
* * *
1798336 CTTATAGATGACCTGAAGGATTTACTCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
1798378 CTTACT-GATGGCCCGAAGGACTTAC
1 CTTA-TAGATGGCCCGAAGGACTTAC
1798403 CAATTTTGGA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 19 0.35
42 35 0.64
43 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (42 bp):
CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
Found at i:1798428 original size:244 final size:244
Alignment explanation
Indices: 1797919--1798890 Score: 1372
Period size: 244 Copynumber: 4.0 Consensus size: 244
1797909 GACTTACCAG
* * *
1797919 TTTTGGAAATAGTTTACTAGGTAAAAAACTTTGAAAACCGTTTTCTTACTTTTCAAAAATTTCAA
1 TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTCTTACTTTTCAAAAATTTCAA
* *
1797984 ATTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTACCCGAA
66 TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTGCCCGAA
*
1798049 GGTCTAATGGATGGCCC-AAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGAT
131 GGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGAT
* * * * *
1798113 TTACTCATCATGCTTGAAAGGCTTACTGATTGTCCAAAGGACTTACCAA
196 TTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAA
** * * *
1798162 TTTTGGTTATAGTTTACTAGGTAAGTAACTTCGGAAATCATTTTCTTACTTTTCAAAAATTTCAA
1 TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTCTTACTTTTCAAAAATTTCAA
* ** *
1798227 TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAAACATTATGCCTGAA
66 TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTGCCCGAA
*
1798292 GGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCTGAAGGAT
131 GGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGAT
1798357 TTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAA
196 TTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAA
** *
1798406 TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATTGTTTTTTTACTTTTCAAAAATTTCAA
1 TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTCTTACTTTTCAAAAATTTCAA
* * * * * * * *
1798471 TTTTAAGATTTAAATAAGAAAATTTTCTCATTTTTTGAAAAACATGTGAAAATATTCTGTCGGAA
66 TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTGCCCGAA
* ** * * * * *
1798536 AGTCTTATGGATTACCCGAACGACTTATCATCTTGCTCGAAAGACTTATAAATGACCCAAATGAT
131 GGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGAT
* * *
1798601 TTACTCATCATGCTCGGAAGACTTACTGATGGCCTGAAAGACTTACCAA
196 TTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAA
* * *
1798650 TTTTGGAAATAGTTTACTAGGTAAGAAACTTCGGAAATCATTTTCTTACTTTTTAAAAATTTCAA
1 TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTCTTACTTTTCAAAAATTTCAA
* * ** * *
1798715 TTTTCAAATTTAAATGAGAAACTTTTCTCATTTTTTGAAAATTATGTGAAAACATCCTTCCTGAA
66 TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTGCCCGAA
* * * * *
1798780 GGTCTTGTGGATGGCCC-AAAGGACTTATCATCTTGCTCAAAATGCTTATATATGACCCAAAGGA
131 GGTCTTATGGATGGCCCGAAA-GACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGA
* * * *
1798844 TTTAATCATCATGCTCGAAACACTTATTGATGGTCCGAAGGACTTAC
195 TTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAC
1798891 TAAGTAAGAA
Statistics
Matches: 644, Mismatches: 83, Indels: 3
0.88 0.11 0.00
Matches are distributed among these distances:
243 134 0.21
244 510 0.79
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (244 bp):
TTTTGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATCATTTTCTTACTTTTCAAAAATTTCAA
TTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTGCCCGAA
GGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGAT
TTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAA
Found at i:1798793 original size:488 final size:487
Alignment explanation
Indices: 1797662--1798890 Score: 1811
Period size: 487 Copynumber: 2.5 Consensus size: 487
1797652 AGATGACCCG
* *
1797662 AAGGACTTACCAATTTTGGAAATAG-TTACTAGGTAAGAAACTTTGAAAAATCATTTTCTTACTT
1 AAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTCG-GAAATCATTTTCTTACTT
* * *
1797726 TTCAAAATTTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACACGTGAAA
65 TTCAAAAATTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAA
* * * * *
1797791 ACATCCTGCCCGAAAGTCTTATGGATGGCTCG-AAGAACTGATCATCTTGCTCGAAAGGCTAATA
130 ACATCCTGCCTGAAGGTCTTATGGATGGCCCGAAAG-ACTTATCATCTTGCTCGAAAGGCTTATA
* * * *
1797855 GATGACCCGAATGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCAGAAAGACTTACCAGT
194 GATGACCCGAAGGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAAT
1797920 TTTGGAAATAGTTTACTAGGTAAAAAACTTTGAAAACCGTTTTCTTACTTTTCAAAAATTTCAAA
259 TTTGGAAATAGTTTACTAGGTAAAAAACTTTGAAAACCGTTTTCTTACTTTTCAAAAATTTCAAA
* * * *
1797985 TTTCAGATTTAAATGAGAAACTTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTACCCGAAG
324 TTTAAGATTTAAATAAGAAAATTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTACCCGAAA
* * * *
1798050 GTCTAATGGATGGCCCAAAGACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGATTT
389 GTCTAATGGATGACCCAAAGACTTATCATCTTGCTCGAAAGACTTATAAATGACCCAAAGGATTT
* * *
1798115 ACTCATCATGCTTGAAAGGCTTACTGATTGTCCA
454 ACTCATCATGCTCGAAAGACTTACTGATTGGCCA
** *
1798149 AAGGACTTACCAATTTTGGTTATAGTTTACTAGGTAAGTAACTTCGGAAATCATTTTCTTACTTT
1 AAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTCGGAAATCATTTTCTTACTTT
1798214 TCAAAAATTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAAA
66 TCAAAAATTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAAA
**
1798279 CATTATGCCTGAAGGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGA
131 CATCCTGCCTGAAGGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGA
*
1798344 TGACCTGAAGGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTT
196 TGACCCGAAGGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTT
* ** * *
1798409 TGGAAATAGTTTACTAGGTAAGAAACTTTGAAAATTGTTTTTTTACTTTTCAAAAATTTCAATTT
261 TGGAAATAGTTTACTAGGTAAAAAACTTTGAAAACCGTTTTCTTACTTTTCAAAAATTTCAAATT
* * * ** *
1798474 TAAGATTTAAATAAGAAAATTTTCTCATTTTTTGAAAAACATGTGAAAATATTCTGTCGGAAAGT
326 TAAGATTTAAATAAGAAAATTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTACCCGAAAGT
* * * *
1798539 CTTATGGATTACCCGAACGACTTATCATCTTGCTCGAAAGACTTATAAATGACCCAAATGATTTA
391 CTAATGGATGACCC-AAAGACTTATCATCTTGCTCGAAAGACTTATAAATGACCCAAAGGATTTA
*
1798604 CTCATCATGCTCGGAAGACTTACTGA-TGGCCTGA
455 CTCATCATGCTCGAAAGACTTACTGATTGGCC--A
1798638 AA-GACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTCGGAAATCATTTTCTTACTTT
1 AAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTCGGAAATCATTTTCTTACTTT
* * * **
1798702 TTAAAAATTTCAATTTTCAAATTTAAATGAGAAACTTTTCTCATTTTTTGAAAATTATGTGAAAA
66 TCAAAAATTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAAA
* * * * *
1798767 CATCCTTCCTGAAGGTCTTGTGGATGGCCC-AAAGGACTTATCATCTTGCTCAAAATGCTTATAT
131 CATCCTGCCTGAAGGTCTTATGGATGGCCCGAAA-GACTTATCATCTTGCTCGAAAGGCTTATAG
* * * * *
1798831 ATGACCCAAAGGATTTAATCATCATGCTCGAAACACTTATTGATGGTCCGAAGGACTTAC
195 ATGACCCGAAGGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAC
1798891 TAAGTAAGAA
Statistics
Matches: 668, Mismatches: 68, Indels: 11
0.89 0.09 0.01
Matches are distributed among these distances:
487 350 0.52
488 315 0.47
489 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (487 bp):
AAGGACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTCGGAAATCATTTTCTTACTTT
TCAAAAATTTCAATTTTCAGATTTAAATGAGAAACTTTTCTCATTTTTAGAAAAACATGTGAAAA
CATCCTGCCTGAAGGTCTTATGGATGGCCCGAAAGACTTATCATCTTGCTCGAAAGGCTTATAGA
TGACCCGAAGGATTTACTCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTT
TGGAAATAGTTTACTAGGTAAAAAACTTTGAAAACCGTTTTCTTACTTTTCAAAAATTTCAAATT
TAAGATTTAAATAAGAAAATTTTCTCATTTTTCGAAAAACATGTGAAAACATCCTACCCGAAAGT
CTAATGGATGACCCAAAGACTTATCATCTTGCTCGAAAGACTTATAAATGACCCAAAGGATTTAC
TCATCATGCTCGAAAGACTTACTGATTGGCCA
Found at i:1806226 original size:19 final size:19
Alignment explanation
Indices: 1806184--1806220 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
1806174 TTGGGCACCC
1806184 AAAAAATATGTCATTTTAA
1 AAAAAATATGTCATTTTAA
1806203 AAAAAATAT-TCATTTTAA
1 AAAAAATATGTCATTTTAA
1806221 TTAAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAAAATATGTCATTTTAA
Found at i:1807373 original size:129 final size:130
Alignment explanation
Indices: 1807138--1807502 Score: 443
Period size: 129 Copynumber: 2.8 Consensus size: 130
1807128 ATAATTTTAA
* * * ** *
1807138 GAGAGAAAATGATAATATCAAATTATTTCCACTCGAGAATAAATGGCCTCTCACGCCTTAGAGCA
1 GAGAGAAAATGATAATATCAAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
* * * *
1807203 GTCATTTATTACTCCAATCAAAATTAAGGA-ATATCACTATT-CATC-TAAAACTCAATATCGAT
66 GTCATTTATTACTCCAATCGAAATGAA-GATATATCACTATTCCATCTTAAAAATC-ATATCAAT
*
1807265 TT
129 TC
* * * *
1807267 GAGTGAAAATGATAATATCTAATGATTTTCGATCGAGAATAAATGACCTCTCATACCTTAAAGCA
1 GAGAGAAAATGATAATATCAAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
* * * *
1807332 GTCATTTATTACTCTAATCGAAATGAAGATATATCATTATTCCGTCTTAAAAATCATATTAATTC
66 GTCATTTATTACTCCAATCGAAATGAAGATATATCACTATTCCATCTTAAAAATCATATCAATTC
* * * *
1807397 GAGAG-AAATGGTAATATCAAATTATTTCCAATCGAGAATACAA-GACCTCTCATTCCTTAAAGT
1 GAGAGAAAATGATAATATCAAATTATTTTCAATCGAGAATA-AATGACCTCTCATACCTTAAAGC
* *
1807460 AATCATTTATTACTCCAATCGAAATGAAGATATATTACTATTC
65 AGTCATTTATTACTCCAATCGAAATGAAGATATATCACTATTC
1807503 TCAATATCGA
Statistics
Matches: 201, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
128 2 0.01
129 176 0.88
130 16 0.08
131 7 0.03
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (130 bp):
GAGAGAAAATGATAATATCAAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
GTCATTTATTACTCCAATCGAAATGAAGATATATCACTATTCCATCTTAAAAATCATATCAATTC
Found at i:1809645 original size:3 final size:3
Alignment explanation
Indices: 1809637--1809708 Score: 81
Period size: 3 Copynumber: 23.3 Consensus size: 3
1809627 TAAAGCTTGA
*
1809637 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT TAT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA-T AAT
* * * *
1809684 AAT ACT ACT ATT ACT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
1809709 TAAAACATCG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
3 55 0.90
4 6 0.10
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:1809840 original size:22 final size:22
Alignment explanation
Indices: 1809783--1809840 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
1809773 AGTTATATTA
*
1809783 ATATACTATATAATTTATACATAT
1 ATATAATATAT-A-TTATACATAT
*
1809807 ATATAATTTATATTATACATAGT
1 ATATAATATATATTATACATA-T
1809830 ATATAA-ATATA
1 ATATAATATATA
1809841 AACTATATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 13 0.43
23 8 0.27
24 9 0.30
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATAATATATATTATACATAT
Found at i:1809916 original size:38 final size:38
Alignment explanation
Indices: 1809830--1809907 Score: 113
Period size: 38 Copynumber: 2.0 Consensus size: 38
1809820 TATACATAGT
*
1809830 ATATAAATATAAACTATATAGTTATATAGTATTTAATA
1 ATATAAATATAAACTATATAATTATATAGTATTTAATA
*
1809868 ATATAAATATAAACTATATATATTATTATA-TATTTTATA
1 ATATAAATATAAACTATATA-ATTA-TATAGTATTTAATA
1809907 A
1 A
1809908 GTTTATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 20 0.56
39 12 0.33
40 4 0.11
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (38 bp):
ATATAAATATAAACTATATAATTATATAGTATTTAATA
Found at i:1815380 original size:19 final size:19
Alignment explanation
Indices: 1815344--1815403 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
1815334 ACACACAGAG
* *
1815344 AAAAAAAAG-AAGATATAA
1 AAAAAAAAGAAAAACATAA
* *
1815362 CAAAAGAAGAAAAACATAA
1 AAAAAAAAGAAAAACATAA
1815381 AAAAAAAAGAAAAA-A-AA
1 AAAAAAAAGAAAAACATAA
1815398 AAAAAA
1 AAAAAA
1815404 CTTCAAGACG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
17 8 0.23
18 8 0.23
19 19 0.54
ACGTcount: A:0.83, C:0.03, G:0.08, T:0.05
Consensus pattern (19 bp):
AAAAAAAAGAAAAACATAA
Found at i:1815386 original size:12 final size:11
Alignment explanation
Indices: 1815342--1815403 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
1815332 TGACACACAG
1815342 AGAAAAAAAAGA
1 AGAAAAAAAA-A
* *
1815354 AGATATAACAAA
1 AGA-AAAAAAAA
* *
1815366 AGAAGAAAAAC
1 AGAAAAAAAAA
*
1815377 ATAAAAAAAAA
1 AGAAAAAAAAA
1815388 AGAAAAAAAAA
1 AGAAAAAAAAA
1815399 A-AAAA
1 AGAAAA
1815404 CTTCAAGACG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
10 4 0.10
11 24 0.60
12 7 0.17
13 5 0.12
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:1829580 original size:56 final size:54
Alignment explanation
Indices: 1829479--1829590 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 54
1829469 CTAAACAATA
1829479 TGATGTTTTCAAATGAATTTTAAAAGAAGCTAAACATGATTTTTAGGGGTTTCT
1 TGATGTTTTCAAATGAATTTTAAAAGAAGCTAAACATGATTTTTAGGGGTTTCT
* * * * * *
1829533 TGATGTTTTCAAATGATTTTTTTTAAAGGAGCTAAGCCTGATTTTTAGGTGTTTCT
1 TGATGTTTTCAAATGA--ATTTTAAAAGAAGCTAAACATGATTTTTAGGGGTTTCT
1829589 TG
1 TG
1829591 CTGATAACTG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 16 0.32
56 34 0.68
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.45
Consensus pattern (54 bp):
TGATGTTTTCAAATGAATTTTAAAAGAAGCTAAACATGATTTTTAGGGGTTTCT
Found at i:1830532 original size:38 final size:37
Alignment explanation
Indices: 1830490--1830580 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 37
1830480 AACTATTTTA
*
1830490 TCATTCTTAGGATTATTTTTCTAGAAAAT-TCGTTTGAG
1 TCATTCTTAGGATTATTTATCTAG--AATGTCGTTTGAG
* *
1830528 TCATTCTTAGGACTGTTTATCTAGAATGTCGTTTGAG
1 TCATTCTTAGGATTATTTATCTAGAATGTCGTTTGAG
*
1830565 TTATTCTTAGGATTAT
1 TCATTCTTAGGATTAT
1830581 CTCCTTAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
36 3 0.07
37 22 0.48
38 21 0.46
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (37 bp):
TCATTCTTAGGATTATTTATCTAGAATGTCGTTTGAG
Found at i:1830571 original size:37 final size:37
Alignment explanation
Indices: 1830490--1830576 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 37
1830480 AACTATTTTA
* *
1830490 TCATTCTTAGGATTATTTTTCTAGAAAATTCGTTTGAG
1 TCATTCTTAGGACTATTTATCTAG-AAATTCGTTTGAG
*
1830528 TCATTCTTAGGACTGTTTATCTAG-AATGTCGTTTGAG
1 TCATTCTTAGGACTATTTATCTAGAAAT-TCGTTTGAG
*
1830565 TTATTCTTAGGA
1 TCATTCTTAGGA
1830577 TTATCTCCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 3 0.07
37 20 0.45
38 21 0.48
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.46
Consensus pattern (37 bp):
TCATTCTTAGGACTATTTATCTAGAAATTCGTTTGAG
Found at i:1832131 original size:18 final size:18
Alignment explanation
Indices: 1832108--1832285 Score: 257
Period size: 18 Copynumber: 9.9 Consensus size: 18
1832098 GCGTAGAATT
*
1832108 TGTCCCGTAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1832126 TGTCCCGAAGGACCACTG
1 TGTCCCGAAGGACCACTA
*
1832144 TGTCCCGAAGGACCATTA
1 TGTCCCGAAGGACCACTA
*
1832162 TGTCCCGAAGGACCATTA
1 TGTCCCGAAGGACCACTA
*
1832180 TGTCCCGAAGGACCATTA
1 TGTCCCGAAGGACCACTA
*
1832198 TGTCCCGAAGGACCATTA
1 TGTCCCGAAGGACCACTA
* *
1832216 TGTCCCGAAGAACCACTG
1 TGTCCCGAAGGACCACTA
1832234 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
* * *
1832252 TTTCCCTAAGGACCACTT
1 TGTCCCGAAGGACCACTA
1832270 TGTCCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
1832286 ATAGACCCTT
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 146 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:1833082 original size:20 final size:22
Alignment explanation
Indices: 1833057--1833114 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
1833047 TTCCCCTTGA
1833057 AGTGCATCGATGCATTC-T-AC
1 AGTGCATCGATGCATTCTTAAC
*
1833077 AGTGCATTGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TTAAC
1833100 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
1833115 CTACCCATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 16 0.50
22 1 0.03
23 3 0.09
24 12 0.38
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (22 bp):
AGTGCATCGATGCATTCTTAAC
Found at i:1833195 original size:45 final size:45
Alignment explanation
Indices: 1833121--1833224 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
1833111 TGCACTACCC
* * *
1833121 ATGCATCGATACACAAATTACCTTTGATGTTTTCAT-TTTAAAGGG
1 ATGCATCGATACACAAATTACATTCGATG-TTTCATCTTTAAAGAG
* * * *
1833166 ATGCATCGATGCACTAATTGCATTCGATGTTTCTTCTTTAAAGAG
1 ATGCATCGATACACAAATTACATTCGATGTTTCATCTTTAAAGAG
*
1833211 -TGCATCGATTCACA
1 ATGCATCGATACACA
1833225 TTGAATGTGC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 17 0.35
45 32 0.65
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (45 bp):
ATGCATCGATACACAAATTACATTCGATGTTTCATCTTTAAAGAG
Found at i:1834276 original size:118 final size:118
Alignment explanation
Indices: 1833993--1834278 Score: 360
Period size: 118 Copynumber: 2.4 Consensus size: 118
1833983 TCCAATGAAA
* * * * * *
1833993 AAGTTCCTAATAAGAAGAACTTGTTCAACATTTCA-CTCGATTCCATCACGGAAGGATGTGGTTT
1 AAGTTCATAATGAGAAGAACTTGTTCAACA-TT-AGCTCGATTCCATCACAGAAGGAAGTGGATC
** *
1834057 AATATTTTGAATAGAAGGGCTCGTAATGAGAAGAACTCATCCAATGAGGGAGAAG
64 AATATTTCCAATAGAAAGGCTCGTAATGAGAAGAACTCATCCAATGAGGGAGAAG
* * * * *
1834112 AAGTTCAGAATGAGAAGAACTTGTTCAATC-TTGGCTCAATTACATCACAGAAGGAAGTTGATCA
1 AAGTTCATAATGAGAAGAACTTGTTCAA-CATTAGCTCGATTCCATCACAGAAGGAAGTGGATCA
* * **
1834176 ATATTTCCAATGGAAAGGTTCGTAATGAGAAGAACTCATCCGTTGAGGGAGAAG
65 ATATTTCCAATAGAAAGGCTCGTAATGAGAAGAACTCATCCAATGAGGGAGAAG
*
1834230 AAGTTCATAATGAGAAGAACTCGTTCAACATTAGCTCGATTCCATCACA
1 AAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCCATCACA
1834279 TAAGAAGATG
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
117 1 0.01
118 114 0.81
119 25 0.18
120 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (118 bp):
AAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCCATCACAGAAGGAAGTGGATCAA
TATTTCCAATAGAAAGGCTCGTAATGAGAAGAACTCATCCAATGAGGGAGAAG
Found at i:1835421 original size:27 final size:27
Alignment explanation
Indices: 1835383--1835436 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
1835373 CCTTAATATA
* *
1835383 TGCACCAAATCTCAGCTCTACAGCAGC
1 TGCACCAAATCTCAGCACTACAACAGC
*
1835410 TGCACCAAATCTCTGCACTACAACAGC
1 TGCACCAAATCTCAGCACTACAACAGC
1835437 CCCAAGCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.37, G:0.13, T:0.19
Consensus pattern (27 bp):
TGCACCAAATCTCAGCACTACAACAGC
Found at i:1836716 original size:29 final size:29
Alignment explanation
Indices: 1836661--1836740 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
1836651 TAACTATTTT
** *
1836661 TTATTTTAATTTAATTAATTTA-TTTTATG
1 TTATTTTAATTT-ATGCATTTACATTTATG
*
1836690 TTATTTATAATTT-TGCCTTTACATTTATG
1 TTATTT-TAATTTATGCATTTACATTTATG
1836719 TTATTTTAATTTATGCATTTAC
1 TTATTTTAATTTATGCATTTAC
1836741 TTGTTAAGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
28 11 0.26
29 26 0.60
30 6 0.14
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.61
Consensus pattern (29 bp):
TTATTTTAATTTATGCATTTACATTTATG
Found at i:1839857 original size:15 final size:15
Alignment explanation
Indices: 1839832--1839860 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1839822 TTATTCCTTT
1839832 TTTTATTATTTATTA
1 TTTTATTATTTATTA
1839847 TTTTATTATTTATT
1 TTTTATTATTTATT
1839861 TTCCTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:1839918 original size:3 final size:3
Alignment explanation
Indices: 1839910--1839969 Score: 52
Period size: 3 Copynumber: 20.0 Consensus size: 3
1839900 ATACCTTTTA
* * *
1839910 TAT TAT TATT TAT TCT TAT TAT TAT TAC TAT TAT T-T TAC TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
1839955 TTT TA- TATT TAT TAT
1 TAT TAT TA-T TAT TAT
1839970 ATATATATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
2 4 0.09
3 36 0.80
4 5 0.11
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1839929 original size:38 final size:37
Alignment explanation
Indices: 1839879--1839971 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 37
1839869 TAATGTTTTG
1839879 TTTATATATTATTATATGTAC-A-TACCTTTTA-TATTATT
1 TTTATAT-TTATTATAT-TACTATTA--TTTTACTATTATT
1839917 ATTTAT-TCTTATTATTATTACTATTATTTTACTATTATT
1 -TTTATAT-TTATTA-TATTACTATTATTTTACTATTATT
1839956 TTTATATTTATTATAT
1 TTTATATTTATTATAT
1839972 ATATATATAT
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
37 3 0.06
38 26 0.54
39 17 0.35
40 2 0.04
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.62
Consensus pattern (37 bp):
TTTATATTTATTATATTACTATTATTTTACTATTATT
Found at i:1839950 original size:11 final size:11
Alignment explanation
Indices: 1839926--1839957 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
1839916 TATTTATTCT
1839926 TATTATTATTAC
1 TATTATT-TTAC
1839938 TATTATTTTAC
1 TATTATTTTAC
1839949 TATTATTTT
1 TATTATTTT
1839958 TATATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTATTTTAC
Found at i:1839963 original size:11 final size:12
Alignment explanation
Indices: 1839913--1839963 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 12
1839903 CCTTTTATAT
1839913 TATTATTTATT-C
1 TATTATTT-TTAC
*
1839925 TTATTATTATTAC
1 -TATTATTTTTAC
1839938 TATTA-TTTTAC
1 TATTATTTTTAC
1839949 TATTATTTTTA-
1 TATTATTTTTAC
1839960 TATT
1 TATT
1839964 TATTATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 14 0.41
12 12 0.35
13 8 0.24
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTATTTTTAC
Found at i:1839974 original size:2 final size:2
Alignment explanation
Indices: 1839958--1840005 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
1839948 CTATTATTTT
*
1839958 TA TA TT TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1839999 TA TA TA T
1 TA TA TA T
1840006 CATTTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:1840126 original size:25 final size:25
Alignment explanation
Indices: 1840087--1840146 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
1840077 TACTTTTTGC
*
1840087 TATTATTATTATTATATTTTATTTTA-
1 TATT-TTATTATTAT-TTTTAATTTAT
* *
1840113 TCTTTTATTCTTATTTTTAATTTAT
1 TATTTTATTATTATTTTTAATTTAT
1840138 TATTTTATT
1 TATTTTATT
1840147 TTGATTTGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 9 0.31
25 17 0.59
26 3 0.10
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (25 bp):
TATTTTATTATTATTTTTAATTTAT
Found at i:1840224 original size:18 final size:18
Alignment explanation
Indices: 1840188--1840223 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1840178 TTTATTAGCA
1840188 TATTCATTTTTTTCATTT
1 TATTCATTTTTTTCATTT
*
1840206 TATT-ATTTTTTTTATTT
1 TATTCATTTTTTTCATTT
1840223 T
1 T
1840224 TGCTTTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (18 bp):
TATTCATTTTTTTCATTT
Found at i:1841152 original size:41 final size:41
Alignment explanation
Indices: 1841114--1841456 Score: 332
Period size: 41 Copynumber: 8.3 Consensus size: 41
1841104 CGTTTTTTCA
* *
1841114 ACAAACGCCGCAAAAGAGTAGTACTTTAGTGGCATTTTTAT
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTTTAT
* *
1841155 ACAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTAT
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTTTAT
* * * *
1841196 ACAAACGCCGCTATATAATTGTACTTTAGTGGCATTTTTAT
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTTTAT
* * * * * * *
1841237 ACAAACGTCGTTATACAC-ATGTACTATAGTGGCGTTTGTGTTT
1 ACAAACGCCGCTAAAGACTA-GTACTTTAGTGGCATTT-T-TAT
*
1841280 ACAAACGCCGCTAAAGACTCA-TAATTTAGTGGCATTTTTAT
1 ACAAACGCCGCTAAAGACT-AGTACTTTAGTGGCATTTTTAT
* * *
1841321 ACAAACGCCGCTAAAGACTCGTACTTTATTGACATTTTTAT
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTTTAT
* * * *
1841362 ACAAACGTCACTAAAGACTCA-TTCTTTAGTGGCGTTTTTAT
1 ACAAACGCCGCTAAAGACT-AGTACTTTAGTGGCATTTTTAT
* * * * * * *
1841403 TCAAACGCCGCTATACACTTGTACTATAGTGGCGTTTGTGTTT
1 ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTT-T-TAT
1841446 ACAAACGCCGC
1 ACAAACGCCGC
1841457 AAGTTTACAA
Statistics
Matches: 246, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
41 201 0.82
42 3 0.01
43 41 0.17
45 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (41 bp):
ACAAACGCCGCTAAAGACTAGTACTTTAGTGGCATTTTTAT
Found at i:1841310 original size:166 final size:166
Alignment explanation
Indices: 1841095--1841458 Score: 509
Period size: 166 Copynumber: 2.2 Consensus size: 166
1841085 ATAGATTCAT
* * *
1841095 CTATAGTGGCGTTT-T-TTCAACAAACGCCGCAAAAGAGTAGTACTTTAGTGGCATTTTTATACA
1 CTATAGTGGCGTTTGTGTT-TACAAACGCCGCAAAAGACTAGTAATTTAGTGGCATTTTTATACA
* * * * **
1841158 AACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTATACAAACGCCGCTATATAATTGTACTTT
65 AACGCCGCTAAAGACTCGTAATTTAGTGACATTTTTATACAAACGCCACTAAAGAATCATACTTT
* *
1841223 AGTGGCATTTTTATACAAACGTCGTTATACACATGTA
130 AGTGGCATTTTTATACAAACGCCGCTATACACATGTA
*
1841260 CTATAGTGGCGTTTGTGTTTACAAACGCCGCTAAAGACTCA-TAATTTAGTGGCATTTTTATACA
1 CTATAGTGGCGTTTGTGTTTACAAACGCCGCAAAAGACT-AGTAATTTAGTGGCATTTTTATACA
* * * * *
1841324 AACGCCGCTAAAGACTCGTACTTTATTGACATTTTTATACAAACGTCACTAAAGACTCATTCTTT
65 AACGCCGCTAAAGACTCGTAATTTAGTGACATTTTTATACAAACGCCACTAAAGAATCATACTTT
* * *
1841389 AGTGGCGTTTTTATTCAAACGCCGCTATACACTTGTA
130 AGTGGCATTTTTATACAAACGCCGCTATACACATGTA
1841426 CTATAGTGGCGTTTGTGTTTACAAACGCCGCAA
1 CTATAGTGGCGTTTGTGTTTACAAACGCCGCAA
1841459 GTTTACAAAT
Statistics
Matches: 175, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
165 14 0.08
166 158 0.90
167 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (166 bp):
CTATAGTGGCGTTTGTGTTTACAAACGCCGCAAAAGACTAGTAATTTAGTGGCATTTTTATACAA
ACGCCGCTAAAGACTCGTAATTTAGTGACATTTTTATACAAACGCCACTAAAGAATCATACTTTA
GTGGCATTTTTATACAAACGCCGCTATACACATGTA
Found at i:1841449 original size:125 final size:123
Alignment explanation
Indices: 1841134--1841456 Score: 373
Period size: 125 Copynumber: 2.6 Consensus size: 123
1841124 CAAAAGAGTA
* *
1841134 GTACTTTAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTATACA
1 GTACTTTAGTGGCGTTTTTATTCAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTATACA
* * * * * * *
1841199 AACGCCGCTATATAATTGTACTTTAGTGGCATTTTTATACAAACGTCGTTATACACAT
66 AACGCCGCTAAAGAATCGTACTTTAGTGACATTTTTATACAAACGTCCTAAGACACAT
* *
1841257 GTACTATAGTGGCGTTTGTGT-TTACAAACGCCGCTAAAGACTCATAATTTAGTGGCATTTTTAT
1 GTACTTTAGTGGCGTTT-T-TATT-CAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTAT
* * *
1841321 ACAAACGCCGCTAAAGACTCGTACTTTATTGACATTTTTATACAAACGTCACTAAAGACTCAT
63 ACAAACGCCGCTAAAGAATCGTACTTTAGTGACATTTTTATACAAACGTC-CT-AAGACACAT
* * * * * * *
1841384 -T-CTTTAGTGGCGTTTTTATTCAAACGCCGCTATACACTTGTACTATAGTGGCGTTTGTGTTTA
1 GTACTTTAGTGGCGTTTTTATTCAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTT-T-TATA
1841447 CAAACGCCGC
64 CAAACGCCGC
1841457 AAGTTTACAA
Statistics
Matches: 169, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
123 45 0.27
124 6 0.04
125 110 0.65
126 2 0.01
127 6 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (123 bp):
GTACTTTAGTGGCGTTTTTATTCAAACGCCGCTAAAGACTCGTAATTTAGTGGCATTTTTATACA
AACGCCGCTAAAGAATCGTACTTTAGTGACATTTTTATACAAACGTCCTAAGACACAT
Found at i:1845354 original size:43 final size:42
Alignment explanation
Indices: 1845280--1845600 Score: 349
Period size: 43 Copynumber: 7.5 Consensus size: 42
1845270 AAAGTAAATA
* *
1845280 GCGGCGTTTGTATCAAAAAAACGCCGCTATAGGTCTGACTTTTT
1 GCGGCGTTTGT-TC-CAAAAACGCCGCTATAGGTCTGACCTTTT
1845324 GCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGGTCTGACCTTTT
* * * *
1845367 GCGGCGTTTCTTCTAAAAATGCCAG-TATAGGTCT-TCTCTTTT
1 GCGGCGTTTGTTCCAAAAACGCC-GCTATAGGTCTGAC-CTTTT
* * *
1845409 GCGGCGTTTGTGTTCAAAAACGTCGTTATAGGTCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGGTCTGACCTTTT
*
1845452 GCGGCGTTTGTGTCCAAAAACGCTGCTATAGGTCTGACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGGTCTGACCTTTT
* * * * ** * *
1845495 GCGGCATTTTTTCTATAAACGCCGCTATATATCATAACTTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGGTC-TGACCTTTT
* * *
1845538 GCGGCGTTTATTCCAAAAACGCCGCTATAGATATTGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGGT-CTGACCTTTT
*
1845581 GCGGCGTTTGTTCAAAAAAC
1 GCGGCGTTTGTTCCAAAAAC
1845601 ATCGTAATAG
Statistics
Matches: 234, Mismatches: 36, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.00
42 52 0.22
43 167 0.71
44 14 0.06
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (42 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGGTCTGACCTTTT
Found at i:1845427 original size:85 final size:84
Alignment explanation
Indices: 1845296--1845598 Score: 344
Period size: 85 Copynumber: 3.6 Consensus size: 84
1845286 TTTGTATCAA
* *
1845296 AAAAACGCCGCTATAGGTCTGACTTTTTGCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGA
1 AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTT-TGTTCAAAAACGCCGCTATAGGTCTGA
* *
1845361 CCTTTTGCGGCGTTTCTTCT
65 CCTTTTGCGGCGTTTATTCC
* * * *
1845381 AAAAATGCCAG-TATAGGTCT-TCTCTTTTGCGGCGTTTGTGTTCAAAAACGTCGTTATAGGTCT
1 AAAAACGCC-GCTATAGGTCTGAC-CTTTTGCGGCGTTT-TGTTCAAAAACGCCGCTATAGGTCT
*
1845444 GACCTTTTGCGGCGTTTGTGTCC
63 GACCTTTTGCGGCGTTTAT-TCC
* * * ** *
1845467 AAAAACGCTGCTATAGGTCTGACCTTTTGCGGCATTTT-TTCTATAAACGCCGCTATATATCATA
1 AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTTTGTTC-AAAAACGCCGCTATAGGTC-TG
*
1845531 ACTTTTTGCGGCGTTTATTCC
64 ACCTTTTGCGGCGTTTATTCC
* *
1845552 AAAAACGCCGCTATAGATATTGACCTTTTGCGGCG-TTTGTTCAAAAA
1 AAAAACGCCGCTATAGGT-CTGACCTTTTGCGGCGTTTTGTTCAAAAA
1845599 ACATCGTAAT
Statistics
Matches: 184, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
84 4 0.02
85 113 0.61
86 66 0.36
87 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (84 bp):
AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTTTGTTCAAAAACGCCGCTATAGGTCTGAC
CTTTTGCGGCGTTTATTCC
Found at i:1845509 original size:128 final size:128
Alignment explanation
Indices: 1845296--1845600 Score: 402
Period size: 128 Copynumber: 2.4 Consensus size: 128
1845286 TTTGTATCAA
*
1845296 AAAAACGCCGCTATAGGTCTGACTTTTTGCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGA
1 AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGA
* * * * * *
1845361 CCTTTTGCGGCGTTTCTTCTAAAAATGCCAG-TATAGGTC-T-TCTCTTTTGCGGCGTTTGTGTT
66 CCTTTTGCGGCATTTCTTCTAAAAACGCC-GCTATAGATCATAACT-TTTTGCGGCGTTTAT-TC
1845423 C
128 C
* * *
1845424 AAAAACGTCGTTATAGGTCTGACCTTTTGCGGCGTTTGTGTCCAAAAACGCTGCTATAGGTCTGA
1 AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGA
* * *
1845489 CCTTTTGCGGCATTTTTTCTATAAACGCCGCTATATATCATAACTTTTTGCGGCGTTTATTCC
66 CCTTTTGCGGCATTTCTTCTAAAAACGCCGCTATAGATCATAACTTTTTGCGGCGTTTATTCC
* * *
1845552 AAAAACGCCGCTATAGATATTGACCTTTTGCGGCGTTTGT-TCAAAAAAC
1 AAAAACGCCGCTATAGGT-CTGACCTTTTGCGGCGTTTGTGTCCAAAAAC
1845601 ATCGTAATAG
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
127 1 0.01
128 117 0.75
129 35 0.23
130 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (128 bp):
AAAAACGCCGCTATAGGTCTGACCTTTTGCGGCGTTTGTGTCCAAAAACGCCGCTATAGGTCTGA
CCTTTTGCGGCATTTCTTCTAAAAACGCCGCTATAGATCATAACTTTTTGCGGCGTTTATTCC
Found at i:1850515 original size:72 final size:72
Alignment explanation
Indices: 1850431--1850597 Score: 217
Period size: 72 Copynumber: 2.3 Consensus size: 72
1850421 TAATGCAGAT
* ** * * *
1850431 GATTTATCTCACTTGAGATTGTCATTCTTAAAACATACCTTGTCTCGCTTAAGACTGTTTTACTC
1 GATTTATTTCACTCAAGATTGTCATTCTTAAAACAGACCTTGTCTCACTTAAGAATGTTTTACTC
1850496 GAAAGAA
66 GAAAGAA
** * * *
1850503 GATTTATTTCACTCAAGATTGTTTTTCTTAAAACAGACTTTGTCTCACTTGATAATGTTTTACTC
1 GATTTATTTCACTCAAGATTGTCATTCTTAAAACAGACCTTGTCTCACTTAAGAATGTTTTACTC
1850568 GAAAGAA
66 GAAAGAA
* *
1850575 AATTTATTTCCCTCAAGATTGTC
1 GATTTATTTCACTCAAGATTGTC
1850598 TTTTATAAAC
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
72 81 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (72 bp):
GATTTATTTCACTCAAGATTGTCATTCTTAAAACAGACCTTGTCTCACTTAAGAATGTTTTACTC
GAAAGAA
Found at i:1850651 original size:36 final size:37
Alignment explanation
Indices: 1850604--1850679 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 37
1850594 TGTCTTTTAT
* * *
1850604 AAACAAGATTTTATCTCTCTTGTGATAGTTTCCCTTG
1 AAACAAGATTTTATCTCCCTTGAGACAGTTTCCCTTG
* *
1850641 AAACAA-ATTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 AAACAAGATTTTATCTCCCTTGAGACAGTTTCCCTTG
1850677 AAA
1 AAA
1850680 TATAAACATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 28 0.82
37 6 0.18
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (37 bp):
AAACAAGATTTTATCTCCCTTGAGACAGTTTCCCTTG
Found at i:1850732 original size:101 final size:102
Alignment explanation
Indices: 1850611--1850803 Score: 316
Period size: 101 Copynumber: 1.9 Consensus size: 102
1850601 TATAAACAAG
* *
1850611 ATTTTATCTCTCTTGTGATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTT
1 ATTTTATCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAATTTCTCTT
*
1850676 GAAATATAAACATTGAAAACA-TTTCCCCTGAAATGA
66 GAAACATAAACATTGAAAACAGTTTCCCCTGAAATGA
* *
1850712 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACAATTTCTCTT
1 ATTTTATCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAATTTCTCTT
* *
1850777 GAAACATAAACTTTTAAAACAGTTTCC
66 GAAACATAAACATTGAAAACAGTTTCC
1850804 ATTGAAACAA
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 79 0.94
102 5 0.06
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (102 bp):
ATTTTATCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAATTTCTCTT
GAAACATAAACATTGAAAACAGTTTCCCCTGAAATGA
Found at i:1850744 original size:36 final size:36
Alignment explanation
Indices: 1850696--1850782 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
1850686 CATTGAAAAC
* ** *
1850696 ATTTCCCCTGAAATGAATTTTGTCT-CTCTTGAGATA
1 ATTTCCCTTGAAACAAATTTTGTCTCCT-TTGAGACA
*
1850732 GTTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACA
1 ATTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACA
*
1850768 ATTTCTCTTGAAACA
1 ATTTCCCTTGAAACA
1850783 TAAACTTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 41 0.95
37 2 0.05
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (36 bp):
ATTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACA
Found at i:1851011 original size:66 final size:65
Alignment explanation
Indices: 1850941--1851076 Score: 157
Period size: 67 Copynumber: 2.1 Consensus size: 65
1850931 TTTTACAATT
* * * * **
1850941 AACAAATTCCGTCTCCCTTGAGACAGTTTCTCTTTAAACACCAACCTTTG-AATATGTTTCTCTT
1 AACAAATTCCGCCTCCCTGGAGACAATTTCTCTTGAAA-AAAAACCTTTGAAAT-TGTTTCTCTT
1851005 GA
64 GA
** *
1851007 AACAAAATTTTGCCTCCCTGGAGGCAATTTCTCTTGAAAAAAAACCTTTGAAATTGTTTCTCTTG
1 AAC-AAATTCCGCCTCCCTGGAGACAATTTCTCTTGAAAAAAAACCTTTGAAATTGTTTCTCTTG
1851072 A
65 A
1851073 AACA
1 AACA
1851077 CAAAAAACCT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
65 1 0.02
66 27 0.46
67 31 0.53
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (65 bp):
AACAAATTCCGCCTCCCTGGAGACAATTTCTCTTGAAAAAAAACCTTTGAAATTGTTTCTCTTGA
Found at i:1851087 original size:33 final size:33
Alignment explanation
Indices: 1851045--1851179 Score: 207
Period size: 33 Copynumber: 4.0 Consensus size: 33
1851035 TTCTCTTGAA
1851045 AAAAAACCTTTGAAATTGTTTCTCTTGAAACAC
1 AAAAAACCTTTGAAATTGTTTCTCTTGAAACAC
1851078 AAAAAACCTTTGAAATTGTTTCTCTTGAAACAC
1 AAAAAACCTTTGAAATTGTTTCTCTTGAAACAC
* *
1851111 AAAAAGCCTTTGAGATTGTTTCTCTTGAAACATACAC
1 AAAAAACCTTTGAAATTGTTTCTCTTG--A-A-ACAC
*
1851148 AAAAAACCTTTGAAAATGTTTCTCTTGAAACA
1 AAAAAACCTTTGAAATTGTTTCTCTTGAAACA
1851180 AAAGACCTTC
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
33 61 0.66
34 1 0.01
35 2 0.02
36 1 0.01
37 28 0.30
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (33 bp):
AAAAAACCTTTGAAATTGTTTCTCTTGAAACAC
Found at i:1851174 original size:70 final size:64
Alignment explanation
Indices: 1851034--1851188 Score: 215
Period size: 70 Copynumber: 2.4 Consensus size: 64
1851024 CTGGAGGCAA
*
1851034 TTTCTCTTG-AA-AAAAAACCTTTGAAATTGTTTCTCTTGAAACACAAAAAACCTTTGAAATTG
1 TTTCTCTTGAAACAAAAAACCTTTGAAATTGTTTCTCTTGAAACACAAAAAACCTTTGAAAATG
*
1851096 TTTCTCTTGAAACACAAAAAGCCTTTGAGATTGTTTCTCTTGAAACATACACAAAAAACCTTTGA
1 TTTCTCTTGAAACA-AAAAA-CCTTTGAAATTGTTTCTCTTG--A-A-ACACAAAAAACCTTTGA
1851161 AAATG
60 AAATG
*
1851166 TTTCTCTTGAAACAAAAGACCTT
1 TTTCTCTTGAAACAAAAAACCTT
1851189 CGAGTTCGAC
Statistics
Matches: 82, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
62 9 0.11
63 2 0.02
64 1 0.01
65 5 0.06
66 20 0.24
68 5 0.06
69 5 0.06
70 35 0.43
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (64 bp):
TTTCTCTTGAAACAAAAAACCTTTGAAATTGTTTCTCTTGAAACACAAAAAACCTTTGAAAATG
Found at i:1851317 original size:84 final size:84
Alignment explanation
Indices: 1851175--1851357 Score: 267
Period size: 84 Copynumber: 2.2 Consensus size: 84
1851165 GTTTCTCTTG
*
1851175 AAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAA
1 AAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAA
*
1851240 GGCTAGAAGGGTTATCTGC
66 GGCAAGAAGGGTTATCTGC
* * * * * * *
1851259 CAACAAAATACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATTATTTGCAGCATAGCTTAA
1 AAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAA
*
1851324 GTCAAGAAGGGTTATCTGC
66 GGCAAGAAGGGTTATCTGC
*
1851343 AAACCAAAGACCTTC
1 AAACAAAAGACCTTC
1851358 AAAGGCAAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (84 bp):
AAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAA
GGCAAGAAGGGTTATCTGC
Found at i:1853115 original size:16 final size:15
Alignment explanation
Indices: 1853091--1853125 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
1853081 CTATTATTCC
1853091 TTTTTTTATTATTTA
1 TTTTTTTATTATTTA
1853106 TTTTTCTTATTATTTA
1 TTTTT-TTATTATTTA
1853122 TTTT
1 TTTT
1853126 CCTTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTATTATTTA
Found at i:1853181 original size:3 final size:3
Alignment explanation
Indices: 1853173--1853212 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
1853163 ATACCTTTTA
* *
1853173 TAT TAT TAT TATT TAT TAT TAT TAT TAC TAT TAT TTT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
1853213 ATTTCAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:1853231 original size:41 final size:40
Alignment explanation
Indices: 1853181--1853276 Score: 99
Period size: 41 Copynumber: 2.3 Consensus size: 40
1853171 TATATTATTA
*
1853181 TTATT-TATTATTAT-TAT-TACTATTATTTTTATATTTCAAT
1 TTATTATATTATTATATATATA-TATCA-TTTT-TATTTCAAT
*
1853221 TTATTATATTATATATATATATATATCATTTTTATTTCATT
1 TTATTATATTAT-TATATATATATATCATTTTTATTTCAAT
1853262 TTATGTATATATATT
1 TTAT-TATAT-TATT
1853277 CTTGTTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
40 5 0.10
41 18 0.38
42 13 0.27
43 10 0.21
44 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (40 bp):
TTATTATATTATTATATATATATATCATTTTTATTTCAAT
Found at i:1853337 original size:48 final size:45
Alignment explanation
Indices: 1853293--1853391 Score: 123
Period size: 48 Copynumber: 2.2 Consensus size: 45
1853283 TTTTATTCTC
*
1853293 TTTTATTTTAT-TTTTATATCTTTACTTTTTACTATTATTATTATTATA
1 TTTTATTTTATCTTTTAT-TC-TTA-TTTTTAAT-TTATTATTATTATA
1853341 TTTTATTTTATCTTTTATTCTTATTTTTAATTTATTATT-TTAT-
1 TTTTATTTTATCTTTTATTCTTATTTTTAATTTATTATTATTATA
*
1853384 TTTGATTT
1 TTTTATTT
1853392 GTTTTTCTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
43 7 0.15
44 4 0.08
45 8 0.17
46 7 0.15
47 3 0.06
48 13 0.27
49 6 0.12
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.72
Consensus pattern (45 bp):
TTTTATTTTATCTTTTATTCTTATTTTTAATTTATTATTATTATA
Found at i:1853340 original size:30 final size:27
Alignment explanation
Indices: 1853296--1853384 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 27
1853286 TATTCTCTTT
*
1853296 TATTTTATTTTTATATCTTTACTTTTTAC
1 TATTTTATTATTATAT-TTTA-TTTTTAC
1853325 TATTATTATTATTATATTTTA-TTTTA-
1 TATT-TTATTATTATATTTTATTTTTAC
* * * *
1853351 TCTTTTATTCTTAT-TTTTA-ATTTAT
1 TATTTTATTATTATATTTTATTTTTAC
1853376 TATTTTATT
1 TATTTTATT
1853385 TTGATTTGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
24 9 0.17
25 17 0.32
26 3 0.06
27 5 0.09
29 8 0.15
30 11 0.21
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (27 bp):
TATTTTATTATTATATTTTATTTTTAC
Found at i:1853359 original size:28 final size:29
Alignment explanation
Indices: 1853291--1853365 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 29
1853281 TTTTTTATTC
*
1853291 TCTTTTATTTTATTTTTATATCTTTACTTTT
1 TCTTTTA--TTATTATTATATCTTTACTTTT
*
1853322 TACTATTATTATTATTATAT-TTTA-TTTT
1 T-CTTTTATTATTATTATATCTTTACTTTT
*
1853350 ATCTTTTATTCTTATT
1 -TCTTTTATTATTATT
1853366 TTTAATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 16 0.42
29 5 0.13
30 11 0.29
31 1 0.03
32 5 0.13
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (29 bp):
TCTTTTATTATTATTATATCTTTACTTTT
Found at i:1853380 original size:7 final size:6
Alignment explanation
Indices: 1853293--1853391 Score: 60
Period size: 6 Copynumber: 15.3 Consensus size: 6
1853283 TTTTATTCTC
*
1853293 TTTTA- TTTTAT TTTTAT ATCTTTACT TTTTACT ATTATTAT TATTAT
1 TTTTAT TTTTAT TTTTAT -T-TTTA-T TTTTA-T -TT-TTAT TTTTAT
* *
1853340 ATTTTA- TTTTAT CTTTTAT TCTTAT TTTTAAT TTATTA- TTTTAT TTTGAT
1 -TTTTAT TTTTAT -TTTTAT TTTTAT TTTT-AT TT-TTAT TTTTAT TTTTAT
1853390 TT
1 TT
1853392 GTTTTTCTCC
Statistics
Matches: 77, Mismatches: 5, Indels: 23
0.73 0.05 0.22
Matches are distributed among these distances:
5 13 0.17
6 27 0.35
7 23 0.30
8 10 0.13
9 4 0.05
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.72
Consensus pattern (6 bp):
TTTTAT
Found at i:1853450 original size:17 final size:18
Alignment explanation
Indices: 1853428--1853464 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1853418 TATTAGCATA
*
1853428 TTCATTTT-TTATTCTTT
1 TTCATTTTATTATTATTT
1853445 TTCATTTTATTATTATTT
1 TTCATTTTATTATTATTT
1853463 TT
1 TT
1853465 TATTAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCATTTTATTATTATTT
Found at i:1854236 original size:10 final size:10
Alignment explanation
Indices: 1854223--1854270 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 10
1854213 GTTCGTGAAC
1854223 GTTCGGTTAT
1 GTTCGGTTAT
1854233 GTTCGGTTATATT
1 GTTCGG-T-TA-T
1854246 CGTTCGGTTAT
1 -GTTCGGTTAT
*
1854257 GTTCGCTTAT
1 GTTCGGTTAT
1854267 GTTC
1 GTTC
1854271 ATTCATTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 19 0.58
11 2 0.06
12 4 0.12
13 2 0.06
14 6 0.18
ACGTcount: A:0.10, C:0.15, G:0.25, T:0.50
Consensus pattern (10 bp):
GTTCGGTTAT
Found at i:1854280 original size:24 final size:24
Alignment explanation
Indices: 1854228--1854283 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
1854218 TGAACGTTCG
* * *
1854228 GTTATGTTCGGTTATATTCGTTCG
1 GTTATGTTCGCTTATATTCATTCA
*
1854252 GTTATGTTCGCTTATGTTCATTCA
1 GTTATGTTCGCTTATATTCATTCA
*
1854276 TTTATGTT
1 GTTATGTT
1854284 TAACACAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.14, C:0.12, G:0.20, T:0.54
Consensus pattern (24 bp):
GTTATGTTCGCTTATATTCATTCA
Found at i:1855377 original size:16 final size:16
Alignment explanation
Indices: 1855352--1855424 Score: 96
Period size: 16 Copynumber: 4.7 Consensus size: 16
1855342 CTAACGTTTA
*
1855352 TATTCGTTTATGTTCG
1 TATTCATTTATGTTCG
1855368 TATTCATTTATGTTCG
1 TATTCATTTATGTTCG
* *
1855384 TGTTCGTTTATGTTCG
1 TATTCATTTATGTTCG
*
1855400 TGTTCATTTATGTTCG
1 TATTCATTTATGTTCG
1855416 T-TT-ATTTAT
1 TATTCATTTAT
1855425 TAAATAAACG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
14 6 0.11
15 2 0.04
16 45 0.85
ACGTcount: A:0.14, C:0.11, G:0.16, T:0.59
Consensus pattern (16 bp):
TATTCATTTATGTTCG
Found at i:1855395 original size:32 final size:32
Alignment explanation
Indices: 1855354--1855416 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1855344 AACGTTTATA
1855354 TTCGTTTATGTTCGTATTCATTTATGTTCGTG
1 TTCGTTTATGTTCGTATTCATTTATGTTCGTG
*
1855386 TTCGTTTATGTTCGTGTTCATTTATGTTCGT
1 TTCGTTTATGTTCGTATTCATTTATGTTCGT
1855417 TTATTTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.11, C:0.13, G:0.19, T:0.57
Consensus pattern (32 bp):
TTCGTTTATGTTCGTATTCATTTATGTTCGTG
Found at i:1858273 original size:3 final size:3
Alignment explanation
Indices: 1858265--1858300 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1858255 TATATGAATA
*
1858265 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1858301 TAAATATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1860777 original size:23 final size:24
Alignment explanation
Indices: 1860748--1860794 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
1860738 TCGATAATTC
1860748 GTTCGTTTATGCTT-GTT-ATTTAT
1 GTTCGTTTATG-TTCGTTCATTTAT
1860771 GTTCGTTTATGTTCGTTCATTTAT
1 GTTCGTTTATGTTCGTTCATTTAT
1860795 ATTTATGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.09
23 14 0.64
24 6 0.27
ACGTcount: A:0.13, C:0.11, G:0.17, T:0.60
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCATTTAT
Found at i:1861666 original size:37 final size:36
Alignment explanation
Indices: 1861619--1861730 Score: 125
Period size: 40 Copynumber: 2.9 Consensus size: 36
1861609 ATTGAATCTT
* * *
1861619 CTTCCTCTGTCTCGATTTAGTACTGATTGGATAGTAC
1 CTTCCGCTGTCTCAATCTAGT-CTGATTGGATAGTAC
* *
1861656 CTTCCGCTGTCTTAATCTAGTCCTGATTGGATTGAGTTCC
1 CTTCCGCTGTCTCAATCTAGT-CTGATTGGA-T-AG-TAC
1861696 CTTCCGCTGTCTCAATCTAGTCTTGATTGGATAGT
1 CTTCCGCTGTCTCAATCTAGTC-TGATTGGATAGT
1861731 GTTTTAAAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
37 27 0.42
38 3 0.05
39 4 0.06
40 30 0.47
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (36 bp):
CTTCCGCTGTCTCAATCTAGTCTGATTGGATAGTAC
Found at i:1869445 original size:21 final size:21
Alignment explanation
Indices: 1869428--1869466 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
1869418 CAATTAAAAT
1869428 AACTTTATATTTTTTTAATAA
1 AACTTTATATTTTTTTAATAA
1869449 AA-TTT-TATGTTTTTTAAT
1 AACTTTATAT-TTTTTTAAT
1869467 TAATCACTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 12 0.71
21 2 0.12
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
AACTTTATATTTTTTTAATAA
Found at i:1870739 original size:14 final size:15
Alignment explanation
Indices: 1870720--1870778 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 15
1870710 AATTAGTCAA
1870720 CTAACA-ATTTTCTT
1 CTAACATATTTTCTT
*
1870734 CTAACATATTTGATTTGT
1 CTAACATATTT--TCT-T
1870752 GACTAACA-ATTTTCTT
1 --CTAACATATTTTCTT
1870768 CTAACATATTT
1 CTAACATATTT
1870779 GATTTGACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
14 12 0.33
15 8 0.22
16 1 0.03
17 4 0.11
18 1 0.03
19 4 0.11
20 6 0.17
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.47
Consensus pattern (15 bp):
CTAACATATTTTCTT
Found at i:1870762 original size:34 final size:34
Alignment explanation
Indices: 1870719--1870784 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
1870709 TAATTAGTCA
1870719 ACTAACAATTTTCTTCTAACATATTTGATTTGTG
1 ACTAACAATTTTCTTCTAACATATTTGATTTGTG
1870753 ACTAACAATTTTCTTCTAACATATTTGATTTG
1 ACTAACAATTTTCTTCTAACATATTTGATTTG
1870785 ACTAAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.30, C:0.15, G:0.08, T:0.47
Consensus pattern (34 bp):
ACTAACAATTTTCTTCTAACATATTTGATTTGTG
Found at i:1872223 original size:60 final size:60
Alignment explanation
Indices: 1872149--1872326 Score: 209
Period size: 60 Copynumber: 3.0 Consensus size: 60
1872139 ATATGTCTCC
* * * * * *
1872149 AAACTATAACTCTCATTTTAAATTGGTCTTTAAACTTTCGAATAATCCAATTTCATCCTT
1 AAACTATGACTCTCATTTTAAATTAGTCCTTAAACTTTTGAATAATACAATTTCATCCCT
*
1872209 AAACTATGACTCTCATTTTAAATTAGTCCTTAAACTTTTGAA-AATTATAATTTCATCCCT
1 AAACTATGACTCTCATTTTAAATTAGTCCTTAAACTTTTGAATAA-TACAATTTCATCCCT
** * *
1872269 AAACTATGGACTC-C-TTTCTAAATTAGTCCCCAAACTTTTGAATATTTCAATTTCATCC
1 AAACTAT-GACTCTCATTT-TAAATTAGTCCTTAAACTTTTGAATAATACAATTTCATCC
1872327 ATACATTCAT
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
59 5 0.05
60 91 0.89
61 6 0.06
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (60 bp):
AAACTATGACTCTCATTTTAAATTAGTCCTTAAACTTTTGAATAATACAATTTCATCCCT
Found at i:1872959 original size:15 final size:15
Alignment explanation
Indices: 1872939--1872990 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
1872929 TGAGACATTA
*
1872939 CCCGCCCCGCATCCG
1 CCCGCCCCACATCCG
1872954 CCCGCCCCACATCCG
1 CCCGCCCCACATCCG
*
1872969 CTCGCCCCACATCCG
1 CCCGCCCCACATCCG
*
1872984 CTCGCCC
1 CCCGCCC
1872991 AGCTAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.10, C:0.65, G:0.15, T:0.10
Consensus pattern (15 bp):
CCCGCCCCACATCCG
Found at i:1878043 original size:15 final size:15
Alignment explanation
Indices: 1878003--1878044 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
1877993 ACTTTAGATA
1878003 TTTATTTTTAA-TAT
1 TTTATTTTTAATTAT
* * *
1878017 TCTAATTCTAATTAT
1 TTTATTTTTAATTAT
1878032 TTTATTTTTAATT
1 TTTATTTTTAATT
1878045 TAACGTAAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTATTTTTAATTAT
Found at i:1880345 original size:60 final size:60
Alignment explanation
Indices: 1880279--1880437 Score: 187
Period size: 60 Copynumber: 2.6 Consensus size: 60
1880269 ATTTTTATTT
* *
1880279 TAAATTAGTCCTTAAATTTTTAAATATTTTAATTTCA-CCCCTAAACTATGA-CTATCATTC
1 TAAATTAGTCCTAAAATTTTTAAACATTTTAATTTCATCCCC-AAACTATGACCT-TCATTC
* * * * *
1880339 TAAATTAATTCTCAAACTTTTAAACATTTCAATTTCATCCCCAAACTATGACCTTCATTC
1 TAAATTAGTCCTAAAATTTTTAAACATTTTAATTTCATCCCCAAACTATGACCTTCATTC
* * *
1880399 TAAATTAGTCTCCAAAATTTTTGAACATTCTAATTTCAT
1 TAAATTAGTC-CTAAAATTTTTAAACATTTTAATTTCAT
1880438 TTCAAACTAT
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
60 54 0.66
61 28 0.34
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (60 bp):
TAAATTAGTCCTAAAATTTTTAAACATTTTAATTTCATCCCCAAACTATGACCTTCATTC
Found at i:1883655 original size:242 final size:243
Alignment explanation
Indices: 1883220--1883695 Score: 564
Period size: 242 Copynumber: 2.0 Consensus size: 243
1883210 CCTTAAAATG
* * * *
1883220 CTTAGTGCATCCGTCCCTGACGATGAGATGATTGAATTTTTCAAATTATCTTATCTACGATTTTG
1 CTTAGTGCATCCGCCCCGGACGATGAGATAATTGAATTTGTCAAATTATCTTATCTACGATTTTG
* * * * ** *
1883285 AGCTGATGAATAATGAAAAAAAATGCATTTATTGGTTAGGGGTGTGTCCGAAGACTCTTAAGGTC
66 AGCTGATAAATAATG-AAAAAAAGGCATTTATTGGTTAAGGGTGCGTCCGAAGACTCAGAAGATC
* * * * * *
1883350 GTTTGGATCGTGAGTTGTATATGACAAAGTGATTATTTAAATAAGTATTAGGAGTAATTGATATT
130 GATTGAATCATGAGTTGGATATGACAAAGTGATTATTTAAACAAATATTAGGAGTAATTGATATT
* ** **
1883415 TTAATATAATAAATTTAAAGAGTATGTCATCAAGTAAGTGAGTTAGGGA
195 TTAATAGAATAAATTTAAAGACCACATCATCAAGTAAGTGAGTTAGGGA
* * * * *
1883464 CTTAGTGCCTCCGCCCCGGATGATGGGATAATTGAATTTGTCAAATTATCTTATTTGATG-TTTT
1 CTTAGTGCATCCGCCCCGGACGATGAGATAATTGAATTTGTCAAATTATCTTATCT-ACGATTTT
* * *
1883528 GAGTTGATAAATAATG-ACAAAAGGCATTTATTGGTTAAAGGGTGCGTCCTAAGACTCAGAA-AT
65 GAGCTGATAAATAATGAAAAAAAGGCATTTATTGGTT-AAGGGTGCGTCCGAAGACTCAGAAGAT
* * * **
1883591 CGATTGAA-CTATTATTTGGATGTGACAAAGTGATTATTTAAACAAATATTAGGAGTGGTTGATA
129 CGATTGAATC-ATGAGTTGGATATGACAAAGTGATTATTTAAACAAATATTAGGAGTAATTGATA
*
1883655 TTTTAATAGGATAAATTTAAAGACCACATCATCAAGTAAGT
193 TTTTAATAGAATAAATTTAAAGACCACATCATCAAGTAAGT
1883696 TAGAAGAGTT
Statistics
Matches: 193, Mismatches: 36, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
241 1 0.01
242 105 0.54
243 19 0.10
244 66 0.34
245 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (243 bp):
CTTAGTGCATCCGCCCCGGACGATGAGATAATTGAATTTGTCAAATTATCTTATCTACGATTTTG
AGCTGATAAATAATGAAAAAAAGGCATTTATTGGTTAAGGGTGCGTCCGAAGACTCAGAAGATCG
ATTGAATCATGAGTTGGATATGACAAAGTGATTATTTAAACAAATATTAGGAGTAATTGATATTT
TAATAGAATAAATTTAAAGACCACATCATCAAGTAAGTGAGTTAGGGA
Found at i:1884356 original size:24 final size:23
Alignment explanation
Indices: 1884308--1884356 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
1884298 ATATTTTGGA
*
1884308 AAAAATATTAAAAGTTATTTCTT
1 AAAAATATTAAAAATTATTTCTT
*
1884331 AAAATTATTATAAAATTAATTT-TT
1 AAAAATATTA-AAAATT-ATTTCTT
1884355 AA
1 AA
1884357 CGATAAACGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 9 0.41
24 9 0.41
25 4 0.18
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
AAAAATATTAAAAATTATTTCTT
Found at i:1885709 original size:2 final size:2
Alignment explanation
Indices: 1885702--1885772 Score: 142
Period size: 2 Copynumber: 35.5 Consensus size: 2
1885692 GCATTTAAAC
1885702 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1885744 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1885773 GGTACACTCG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 69 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1888781 original size:24 final size:27
Alignment explanation
Indices: 1888721--1888775 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
1888711 GTCTGCAAAA
*
1888721 TAATAAA-ACATAATAATTAATATTAT
1 TAATAAATATATAATAATTAATATTAT
1888747 TAATAAAATATATAATAA-TAATATTAT
1 TAAT-AAATATATAATAATTAATATTAT
1888774 TA
1 TA
1888776 TTATATCCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 14 0.54
28 8 0.31
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
TAATAAATATATAATAATTAATATTAT
Found at i:1889218 original size:55 final size:56
Alignment explanation
Indices: 1889109--1889229 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 56
1889099 AGAGAGTACA
* * * *
1889109 AGAAATCTTCTGAAAACGAGTTTGCTCCTTATTACTTTCAGGGAGTATAGAACTCG
1 AGAAATCTTCAGAAAACGAGTATGCTCCCTATTACTTTCAGAGAGTATAGAACTCG
* * *
1889165 A-ACAATCTTCAGCAAACGTGTATGCTCCCTATT-CTTTCAGAGAGTATATAACTCG
1 AGA-AATCTTCAGAAAACGAGTATGCTCCCTATTACTTTCAGAGAGTATAGAACTCG
1889220 AGAAATCTTC
1 AGAAATCTTC
1889230 TCAAAATGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
55 29 0.52
56 27 0.48
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (56 bp):
AGAAATCTTCAGAAAACGAGTATGCTCCCTATTACTTTCAGAGAGTATAGAACTCG
Found at i:1889247 original size:55 final size:55
Alignment explanation
Indices: 1889112--1889340 Score: 191
Period size: 56 Copynumber: 4.1 Consensus size: 55
1889102 GAGTACAAGA
* * * * *
1889112 AATCTTCTGAAAACGAGTTTGCTCCTTATTACTTTCAGGGAGTATAGAACTCGAAC
1 AATCTTCTCAAAACGGGTTCGCTCCCTATT-CTTTCAGAGAGTATAGAACTCGAAC
* * *
1889168 AATCTTCAGC-AAACGTGTAT-GCTCCCTATTCTTTCAGAGAGTATATAACTCGAGA-
1 AATCTTC-TCAAAACGGGT-TCGCTCCCTATTCTTTCAGAGAGTATAGAACTCGA-AC
* * * *
1889223 AATCTTCTCAAAATGGGTTCGCTCCCTATTCTTTTCA-AGGAGTACAGAACTAGAAT
1 AATCTTCTCAAAACGGGTTCGCTCCCTATTC-TTTCAGA-GAGTATAGAACTCGAAC
* * * * * *
1889279 AATCTTCTGAAAATGGGTTCACTCCCTCTTTCTTTAAG-GGGTAT-GAACTCGAAC
1 AATCTTCTCAAAACGGGTTCGCTCCCT-ATTCTTTCAGAGAGTATAGAACTCGAAC
1889333 AATCTTCT
1 AATCTTCT
1889341 GGTGTGATTC
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
54 18 0.13
55 51 0.36
56 70 0.49
57 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (55 bp):
AATCTTCTCAAAACGGGTTCGCTCCCTATTCTTTCAGAGAGTATAGAACTCGAAC
Found at i:1889476 original size:83 final size:83
Alignment explanation
Indices: 1889371--1889524 Score: 254
Period size: 83 Copynumber: 1.9 Consensus size: 83
1889361 CTCTTTGGTG
* * *
1889371 AAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAAG
1 AAGGCTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATAGCCCGAAAG
1889436 ACTTATCATCTTGCTCTA
66 ACTTATCATCTTGCTCTA
* * *
1889454 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATAGTCCGAAGG
1 AAGGCTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATAGCCCGAAAG
1889519 ACTTAT
66 ACTTAT
1889525 AAATTGTGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (83 bp):
AAGGCTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATAGCCCGAAAG
ACTTATCATCTTGCTCTA
Found at i:1889504 original size:42 final size:42
Alignment explanation
Indices: 1889375--1889504 Score: 163
Period size: 42 Copynumber: 3.1 Consensus size: 42
1889365 TTGGTGAAGG
* *
1889375 CTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGA
1 CTTACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
* * * * * * *
1889417 CTTACTGATGGCCCGAAAGACTT-ATCATCTTGCTCTAAAGG
1 CTTACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
*
1889458 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
1889500 CTTAC
1 CTTAC
1889505 TGATAGTCCG
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 34 0.49
42 36 0.51
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
CTTACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
Found at i:1889516 original size:42 final size:41
Alignment explanation
Indices: 1889386--1889519 Score: 162
Period size: 42 Copynumber: 3.2 Consensus size: 41
1889376 TTACAAATTA
1889386 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGG
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGAT-G
* * * * * *
1889428 CCCGAAAGACTT-ATCATCTTGCTCTAAAGGCTTACAGATG
1 CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATG
*
1889468 ACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATAG
1 -CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGAT-G
*
1889511 TCCGAAGGA
1 CCCGAAGGA
1889520 CTTATAAATT
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
40 1 0.01
41 33 0.44
42 40 0.53
43 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (41 bp):
CCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATG
Found at i:1889719 original size:42 final size:41
Alignment explanation
Indices: 1889627--1889723 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 41
1889617 AGGTCTTATG
* * *
1889627 GATGGCCCGAAGGATTTATCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGATTTAGCATCATGCTCGAAAGACTTACA
* *
1889668 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTA
1 GATGGCCCGAAGGATTT-AGCATCATGCTCGAAAGACTTA-CA
1889711 -ATGGCCCGAAGGA
1 GATGGCCCGAAGGA
1889724 CTTATAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 16 0.33
42 31 0.65
43 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGATTTAGCATCATGCTCGAAAGACTTACA
Found at i:1889773 original size:204 final size:210
Alignment explanation
Indices: 1889423--1889887 Score: 708
Period size: 204 Copynumber: 2.2 Consensus size: 210
1889413 AAGACTTACT
*
1889423 GATGGCCCGAAAGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATC
1 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATC
* * *
1889488 ATGCTCGAAAGACTTACTGATAGTCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCTCATTC
66 ATGCTCGAAAGACTTACTAATAGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC
*
1889553 TTAGTTTTCAAAAATTTCATCTTCTTAAAACATCA-TTTT-TTTC-A-T-T-TGAAAACATCCTA
131 TTAGTTTTCAAAAATTTCAACTTCTTAAAACATCATTTTTCTTTCAATTATGTGAAAACATCCTA
*
1889612 CCCTAAGGTCTTATG
196 CCCGAAGGTCTTATG
* *
1889627 GATGGCCCGAAGGATTTATCATCTTGCTCTAAAGACTTACAGATGACCCGAAGGATTTAAGCATC
1 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATC
* *
1889692 ATGCTCGAAAGACTTATTAATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC
66 ATGCTCGAAAGACTTACTAATAGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC
*
1889757 TTAGTTTTCAAAAATTTCAACTTCTTAAGACATCATTTTTTCACTTTCAAATTCATGTGAAAACA
131 TTAGTTTTCAAAAATTTCAACTTCTTAAAACATCA-TTTTT--CTTTC-AATT-ATGTGAAAACA
*
1889822 TCCTACCCGAGGGTCTTATG
191 TCCTACCCGAAGGTCTTATG
* * *
1889842 GATGGCCCAAAGGACTTATCGTCTTGCTCTAAAGGCTTATAGATGA
1 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGA
1889888 ATTTGCTTCA
Statistics
Matches: 233, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
204 155 0.67
206 4 0.02
209 4 0.02
211 1 0.00
212 1 0.00
214 1 0.00
215 67 0.29
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (210 bp):
GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATC
ATGCTCGAAAGACTTACTAATAGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC
TTAGTTTTCAAAAATTTCAACTTCTTAAAACATCATTTTTCTTTCAATTATGTGAAAACATCCTA
CCCGAAGGTCTTATG
Done.