Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5962497
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 30
Found at i:3696069 original size:44 final size:42
Alignment explanation
Indices: 3695955--3696076 Score: 104
Period size: 44 Copynumber: 2.8 Consensus size: 42
3695945 AAACCCGACC
* *
3695955 GATGCATCGATGCA-TGATCTTGTGCATTGATGCACATTCAAGG
1 GATGCATCGATGCATTG-T-TAGTGCATCGATGCACATTCAAGG
* * **
3695998 CATGCATCGGTGCATCATG-CGGATGCATCGATGCACATTCAAAGG
1 GATGCATCGATGCAT--TGTTAG-TGCATCGATGCACATTC-AAGG
*
3696043 GATGCATCGATGCATTGTTAAGTGCATCGGTGCA
1 GATGCATCGATGCATTGTT-AGTGCATCGATGCA
3696077 TTAAGCACAA
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
43 15 0.24
44 27 0.44
45 18 0.29
46 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (42 bp):
GATGCATCGATGCATTGTTAGTGCATCGATGCACATTCAAGG
Found at i:3699926 original size:22 final size:21
Alignment explanation
Indices: 3699886--3699925 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
3699876 GAGTTTGTTT
3699886 TCATTTTTCAATTTTAAAACA
1 TCATTTTTCAATTTTAAAACA
3699907 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
3699926 ATAATTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:3701958 original size:64 final size:62
Alignment explanation
Indices: 3701872--3702081 Score: 181
Period size: 64 Copynumber: 3.2 Consensus size: 62
3701862 TGCACTAAGA
* *
3701872 GTGCAGCGATGCATGAAGTGCATTCGATGTTTGAAAAATAGCCTGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATGAAATGCATTCGATGTTT-AAAAATAG-CTGGTGCATCGATGCATGGATT
* * *
3701936 GTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATCAG--AGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATG-TTTAA--AAAT-AGCTGGTGCATCGATGCATGGAT
*
3701999 A
62 T
* * * * ** * *
3702000 GTGCATTGGTGCATGGAATGCATTCGATGTTTCAATTTATTCATTGATGCATCGATGCATGGTAT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAATA-GC--TGGTGCATCGATGCATGG-AT
3702065 T
62 T
3702066 GATGCATCGATGCATG
1 G-TGCATCGATGCATG
3702082 CCTTAGAAAA
Statistics
Matches: 115, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
60 1 0.01
61 2 0.02
63 4 0.03
64 70 0.61
65 18 0.16
66 6 0.05
67 14 0.12
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (62 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTAAAAATAGCTGGTGCATCGATGCATGGATT
Found at i:3702002 original size:19 final size:19
Alignment explanation
Indices: 3701978--3702028 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
3701968 TAATTAAATC
3701978 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
* *
3701997 AGAGTGCATTGGTGCATGG
1 AGAGTGCATCGATGCATGG
3702016 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
3702029 TTTCAATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 4 0.15
18 5 0.19
19 18 0.67
ACGTcount: A:0.25, C:0.14, G:0.35, T:0.25
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:3702066 original size:21 final size:21
Alignment explanation
Indices: 3702042--3702081 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3702032 CAATTTATTC
3702042 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
3702063 ATTGATGCATCGATGCATG
1 ATTGATGCATCGATGCATG
3702082 CCTTAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:3706034 original size:22 final size:21
Alignment explanation
Indices: 3706009--3706079 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
3705999 TAAATAACTG
*
3706009 AAGTGCTTTAGCACTAACACTA
1 AAGTGCTTT-GCACTAACACAA
* * *
3706031 AAGTGCGTTCGCACTGATACAA
1 AAGTGC-TTTGCACTAACACAA
* *
3706053 AAGTGCATTTGCACTGATACAA
1 AAGTGC-TTTGCACTAACACAA
3706075 AAGTG
1 AAGTG
3706080 TCATAACACT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 40 0.95
23 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (21 bp):
AAGTGCTTTGCACTAACACAA
Found at i:3706089 original size:22 final size:22
Alignment explanation
Indices: 3706042--3706094 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
3706032 AGTGCGTTCG
**
3706042 CACTGATACAAAAGTGCATTTG
1 CACTGATACAAAAGTGCATTAA
3706064 CACTGATACAAAAGTGTCA-TAA
1 CACTGATACAAAAGTG-CATTAA
3706086 CACTTGATA
1 CAC-TGATA
3706095 AAAGAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (22 bp):
CACTGATACAAAAGTGCATTAA
Found at i:3711820 original size:27 final size:27
Alignment explanation
Indices: 3711765--3711934 Score: 174
Period size: 27 Copynumber: 6.4 Consensus size: 27
3711755 ACTCCCACTT
*
3711765 GGACTCCTGCTAGCA---CATCTTTTA
1 GGACTCCTGCTAGCACTGCGTCTTTTA
3711789 GGACTCCTGCTAGCACTGCGTCTTTTA
1 GGACTCCTGCTAGCACTGCGTCTTTTA
* * * *
3711816 GGACT-CTGGCTAACACCGCTTCTCTTA
1 GGACTCCT-GCTAGCACTGCGTCTTTTA
* *
3711843 GGACTCCGGCTAAG-ACTGCGTCTCTTA
1 GGACTCCTGCT-AGCACTGCGTCTTTTA
*
3711870 GGACTCATGCTAGCACTAG-GTCTTTTA
1 GGACTCCTGCTAGCACT-GCGTCTTTTA
*
3711897 GGACTCCTGCTAACACTAG-GTCTTTTA
1 GGACTCCTGCTAGCACT-GCGTCTTTTA
3711924 GGACTCCTGCT
1 GGACTCCTGCT
3711935 CCTTCCTTTT
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
24 15 0.12
26 4 0.03
27 102 0.82
28 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (27 bp):
GGACTCCTGCTAGCACTGCGTCTTTTA
Found at i:3715741 original size:5 final size:5
Alignment explanation
Indices: 3715733--3715759 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
3715723 ATGATTACAA
3715733 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
3715760 TAGGAACGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:3716698 original size:135 final size:135
Alignment explanation
Indices: 3716454--3716734 Score: 481
Period size: 135 Copynumber: 2.1 Consensus size: 135
3716444 TGAGATGAAA
3716454 AATTATTATTAGTTGAGACCACATATAACATGATAAATCGAGATCATCTAAAAAAATTTCGTCCA
1 AATTATTATTAGTTGAGACCACATATAACATGATAAATCGAGATCATCTAAAAAAATTTCGTCCA
* * * * *
3716519 TAAGAGGTAGGCACTCATAAGTAGATATCCGTAAACTCCGAATACCCGTATTTTCATGTAACAAT
66 TAAGAGGTAGGCACTCATAAGTAGATATCCATAAACTCCAAATACACATATTCTCATGTAACAAT
3716584 TATCC
131 TATCC
* *
3716589 AATTATTATTAGTTGAGACCACATATAACATGATGAATCGAGATCATCTAAAAAAATTTCGTTCA
1 AATTATTATTAGTTGAGACCACATATAACATGATAAATCGAGATCATCTAAAAAAATTTCGTCCA
*
3716654 TAAGAGGTAGGCACTCATAAGTAGATATTCATAAACTCCAAATACACATATTCTCATGTAACAAT
66 TAAGAGGTAGGCACTCATAAGTAGATATCCATAAACTCCAAATACACATATTCTCATGTAACAAT
3716719 TATCC
131 TATCC
*
3716724 AATTAATATTA
1 AATTATTATTA
3716735 ATACTTAAAA
Statistics
Matches: 137, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
135 137 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (135 bp):
AATTATTATTAGTTGAGACCACATATAACATGATAAATCGAGATCATCTAAAAAAATTTCGTCCA
TAAGAGGTAGGCACTCATAAGTAGATATCCATAAACTCCAAATACACATATTCTCATGTAACAAT
TATCC
Found at i:3716808 original size:28 final size:30
Alignment explanation
Indices: 3716776--3716838 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
3716766 ATTTAAAACT
*
3716776 TAAAATTTTAT-AATACATAATATA-AATA
1 TAAAATTTTATAAATACAGAATATATAATA
* *
3716804 TAAAA-TTTATAAATCCAGACTATATAATA
1 TAAAATTTTATAAATACAGAATATATAATA
3716833 TAAAAT
1 TAAAAT
3716839 AAAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 5 0.17
28 15 0.52
29 9 0.31
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (30 bp):
TAAAATTTTATAAATACAGAATATATAATA
Found at i:3719919 original size:31 final size:31
Alignment explanation
Indices: 3719876--3719983 Score: 162
Period size: 31 Copynumber: 3.5 Consensus size: 31
3719866 ATATTTATAT
* *
3719876 ATTTGGTACTTATTACTTACACATTTAATTA
1 ATTTGGTCCTTATTACTTACACATTTAACTA
*
3719907 TTTTGGTCCTTATTACTTACACATTTAACTA
1 ATTTGGTCCTTATTACTTACACATTTAACTA
*
3719938 ATTTGGTCCTTATTACTTACACATTTAACCA
1 ATTTGGTCCTTATTACTTACACATTTAACTA
* *
3719969 ATTTGATCCTAATTA
1 ATTTGGTCCTTATTA
3719984 TAATTTAGTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.46
Consensus pattern (31 bp):
ATTTGGTCCTTATTACTTACACATTTAACTA
Found at i:3723952 original size:193 final size:193
Alignment explanation
Indices: 3723452--3724033 Score: 938
Period size: 193 Copynumber: 3.0 Consensus size: 193
3723442 AAATCTTACT
*
3723452 TTCGATATAACCTTATTCTTGTGCTTTTTTTTCCTTGTCTTTAAGCTTGCATGTATCTCGATCTC
1 TTCGATATAACCTTATTCTTGTG---TTTTTTCCTTGTCCTTAAGCTTGCATGTATCTCGATCTC
* * *
3723517 GTTCACGATCTATGTAAGCGCCAATTCCAATTATATAATTCAAATCATATGTTAGTATCGTAATA
63 GTTCACGATCTATGTAAGCGCCATTTCCAATTATATAATTCAAATCATATGTTAGTATCATACTA
* *
3723582 ACATAGGCGTATGCTAACAAATAAAATTTATAAAAATTCTTTCAATACTTTTTCGATACTAATTT
128 ACATAGGCGCATGCTAACAAAT-AAATTTATAAAAAATCTTTCAATACTTTTTCGATACTAATTT
3723647 CA
192 CA
*
3723649 TTCGATATAACCTTATTCTTGTGTTTTTTCCCCTTTTCCTTAAGCTTGCATGTATCTCGATCTCG
1 TTCGATATAACCTTATTCTTGTGTTTTTT--CCTTGTCCTTAAGCTTGCATGTATCTCGATCTCG
*
3723714 TTCACGATCTATGTAAGTGCCATTTCCAATTATATAATTCAAATCATATGTTAGTATCATACTAA
64 TTCACGATCTATGTAAGCGCCATTTCCAATTATATAATTCAAATCATATGTTAGTATCATACTAA
3723779 CATAGGCGCATGCTAACAAATAAATTTATAAAAAATCTTTCAATACTTTTTCGATACTAATTTCA
129 CATAGGCGCATGCTAACAAATAAATTTATAAAAAATCTTTCAATACTTTTTCGATACTAATTTCA
3723844 TTC-ATTATAACCTTATTCTTGTGTTTTTTCCTTGTCCTTAAGCTTGCATGTATCTCGATCTCGT
1 TTCGA-TATAACCTTATTCTTGTGTTTTTTCCTTGTCCTTAAGCTTGCATGTATCTCGATCTCGT
* * *
3723908 TCACAATCTATGTAAGCGCCATTTCTAATTATATAATTCAAATCATATGTTAGTATTATACTAAC
65 TCACGATCTATGTAAGCGCCATTTCCAATTATATAATTCAAATCATATGTTAGTATCATACTAAC
* ** *
3723973 ATAGGCACATGCTAACAAATAAATTTATAAAAAA--AATCAATA-TTTTTCGATATTAATTTCA
130 ATAGGCGCATGCTAACAAATAAATTTATAAAAAATCTTTCAATACTTTTTCGATACTAATTTCA
3724034 CTTTCAAAAC
Statistics
Matches: 365, Mismatches: 17, Indels: 13
0.92 0.04 0.03
Matches are distributed among these distances:
190 18 0.05
191 6 0.02
193 128 0.35
194 7 0.02
195 70 0.19
196 113 0.31
197 23 0.06
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (193 bp):
TTCGATATAACCTTATTCTTGTGTTTTTTCCTTGTCCTTAAGCTTGCATGTATCTCGATCTCGTT
CACGATCTATGTAAGCGCCATTTCCAATTATATAATTCAAATCATATGTTAGTATCATACTAACA
TAGGCGCATGCTAACAAATAAATTTATAAAAAATCTTTCAATACTTTTTCGATACTAATTTCA
Found at i:3731856 original size:15 final size:15
Alignment explanation
Indices: 3731832--3731870 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
3731822 TTCCCCAATT
3731832 TTTTTGTTTCCTCTCA
1 TTTTT-TTTCCTCTCA
3731848 TTTTTTTT-CTCTCA
1 TTTTTTTTCCTCTCA
*
3731862 ATTTTTTTC
1 TTTTTTTTC
3731871 GAATGATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.62
15 3 0.14
16 5 0.24
ACGTcount: A:0.08, C:0.21, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTTTTTCCTCTCA
Found at i:3732018 original size:15 final size:16
Alignment explanation
Indices: 3731985--3732024 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
3731975 TGCATTATCA
*
3731985 TTTTT-ATTTTTACTG
1 TTTTTAATTTTTAATG
3732000 TTTTTAATTTTTAAT-
1 TTTTTAATTTTTAATG
3732015 TTTTTAATTT
1 TTTTTAATTT
3732025 GATTTGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTAATTTTTAATG
Found at i:3732106 original size:9 final size:8
Alignment explanation
Indices: 3732092--3732214 Score: 77
Period size: 9 Copynumber: 13.6 Consensus size: 8
3732082 AGATTATAAA
3732092 AAAAAATAT
1 AAAAAA-AT
3732101 AAAAAAAT
1 AAAAAAAT
3732109 ATTAATAAAATT
1 A--AA-AAAA-T
* *
3732121 ATAATAAT
1 AAAAAAAT
3732129 AAAATAAAT
1 AAAA-AAAT
3732138 AAAATAAAT
1 AAAA-AAAT
3732147 AATAAAAAT
1 AA-AAAAAT
3732156 AAAAAAA-
1 AAAAAAAT
3732163 AATTAATAAAT
1 AA--AA-AAAT
3732174 AAATAAAAT
1 AAA-AAAAT
3732183 AAAACAAAT
1 AAAA-AAAT
*
3732192 AAATAAAT
1 AAAAAAAT
3732200 AAATAAAAAT
1 -AA-AAAAAT
3732210 AAAAA
1 AAAAA
3732215 GAACCAAAAT
Statistics
Matches: 94, Mismatches: 6, Indels: 29
0.73 0.05 0.22
Matches are distributed among these distances:
7 2 0.02
8 20 0.21
9 50 0.53
10 14 0.15
11 6 0.06
12 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAAAAT
Found at i:3732108 original size:33 final size:34
Alignment explanation
Indices: 3732071--3732210 Score: 98
Period size: 33 Copynumber: 4.2 Consensus size: 34
3732061 TCTAAAATCG
* *
3732071 AAAATATT-ATTAGATTATAA-AAAAAAATATAAA
1 AAAATATTAATAAAATTATAATAAAAAAATA-AAA
* *
3732104 AAAATATTAATAAAATTATAATAATAAAATAAAT
1 AAAATATTAATAAAATTATAATAAAAAAATAAAA
*
3732138 AAAATAAATAATAAAA--ATAA-AAAAAAATTAATAA
1 AAAAT-ATTAATAAAATTATAATAAAAAAA-TAA-AA
* * *
3732172 ATAAATA-AAATAAAA-CA-AATAAATAAATAAATA
1 A-AAATATTAATAAAATTATAATAAAAAAATAAA-A
3732205 AAAATA
1 AAAATA
3732211 AAAAGAACCA
Statistics
Matches: 89, Mismatches: 9, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
32 12 0.13
33 29 0.33
34 27 0.30
35 21 0.24
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.26
Consensus pattern (34 bp):
AAAATATTAATAAAATTATAATAAAAAAATAAAA
Found at i:3732139 original size:4 final size:4
Alignment explanation
Indices: 3732130--3732206 Score: 77
Period size: 4 Copynumber: 18.8 Consensus size: 4
3732120 TATAATAATA
* *
3732130 AAAT AAAT AAAAT AAAT AATAA AAAT AAA- AAA- AAAT TAAT AAAT AAAT
1 AAAT AAAT -AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
3732178 AAAAT AAAAC AAAT AAAT AAAT AAAT AAA
1 -AAAT -AAAT AAAT AAAT AAAT AAAT AAA
3732207 AATAAAAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
3 6 0.10
4 42 0.67
5 15 0.24
ACGTcount: A:0.78, C:0.01, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:3732146 original size:27 final size:27
Alignment explanation
Indices: 3732087--3732228 Score: 118
Period size: 27 Copynumber: 5.2 Consensus size: 27
3732077 TTATTAGATT
* *
3732087 ATAAA-AAA-AAATATAAAAAAATATTA
1 ATAAATAAATAAAAATAAAAAAATA-AA
* *
3732113 ATAAA-ATTATAATAATAAAATAAATAAA
1 ATAAATA-AATAAAAATAAAA-AAATAAA
3732141 ATAAAT-AATAAAAATAAAAAAA-AATTA
1 ATAAATAAATAAAAATAAAAAAATAA--A
3732168 ATAAATAAAT-AAAATAAAACAAAT-AA
1 ATAAATAAATAAAAATAAAA-AAATAAA
*
3732194 ATAAATAAATAAAAATAAAAAGAACCAAA
1 ATAAATAAATAAAAATAAAAA-AA-TAAA
3732223 ATAAAT
1 ATAAAT
3732229 GATGTTCAAA
Statistics
Matches: 96, Mismatches: 7, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
25 2 0.02
26 21 0.22
27 39 0.41
28 21 0.22
29 13 0.14
ACGTcount: A:0.75, C:0.02, G:0.01, T:0.22
Consensus pattern (27 bp):
ATAAATAAATAAAAATAAAAAAATAAA
Found at i:3732192 original size:22 final size:21
Alignment explanation
Indices: 3732087--3732212 Score: 96
Period size: 22 Copynumber: 5.7 Consensus size: 21
3732077 TTATTAGATT
*
3732087 ATAAA-AAAA-AATATAAAAAA
1 ATAAATAAAATAA-ATAAATAA
3732107 ATATTAATAAAATTATAAT-AATAAA
1 ATA--AATAAAA-TA-AATAAAT-AA
*
3732132 ATAAATAAAATAAATAATAAAA
1 ATAAATAAAATAAATAA-ATAA
* *
3732154 ATAAAAAAAAATTAATAAATAA
1 AT-AAATAAAATAAATAAATAA
*
3732176 ATAAAATAAAACAAATAAATAA
1 AT-AAATAAAATAAATAAATAA
3732198 ATAAATAAAAATAAA
1 ATAAAT-AAAATAAA
3732213 AAGAACCAAA
Statistics
Matches: 86, Mismatches: 9, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
20 3 0.03
21 7 0.08
22 40 0.47
23 25 0.29
24 2 0.02
25 8 0.09
26 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.23
Consensus pattern (21 bp):
ATAAATAAAATAAATAAATAA
Found at i:3733919 original size:124 final size:124
Alignment explanation
Indices: 3733743--3734171 Score: 624
Period size: 124 Copynumber: 3.5 Consensus size: 124
3733733 CAAATTGGTT
* * * * ** * *
3733743 TTGAGTTGAATATTCTTTGTCGTGAAGTTGAAATCCAATCTTGAGATTAATGTTGTTGGTGGGCA
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTGGTGGGCA
* *
3733808 CGATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGACCCCTTCATTGTGAAGTTGAGCC
66 CAATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCC
* * * * *
3733867 TTGAATTAGATATCCTTCGTTGAGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTCGTGGGAA
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTGGTGGGCA
** * * *
3733932 TTATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAATTGAGCC
66 CAATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCC
* * *
3733991 TTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCA
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTGGTGGGCA
* *
3734056 CAATTCCCTTCATCGTAAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCC
66 CAATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCC
*
3734115 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTAAAGATGAATGTTGCT
1 TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCT
3734172 TCGAGTCCAA
Statistics
Matches: 268, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
124 268 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (124 bp):
TTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTGGTGGGCA
CAATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCC
Found at i:3734393 original size:110 final size:110
Alignment explanation
Indices: 3734228--3734635 Score: 350
Period size: 110 Copynumber: 3.5 Consensus size: 110
3734218 AAACTGGGAA
** * * *
3734228 GCCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAACTTGAAATCCAATCT
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAATCT
* *
3734293 AGAGTTGGCTCGATATCTTTCATCGTGAAGTTGAAATCGTGGATG
66 AGAGTTGGCTCGATATCATTCGTCGTGAAGTTGAAATCGTGGATG
* * * * * * *
3734338 GCCCTTTCCTTGTGAAGTTGAGCCTTGACTTAAATATCATTCGTTGTGAAGTTGAAATCCAAGCT
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAATCT
* * * * *
3734403 TGTATTGTTTCGAG-TCCAATATCCTTCGCCGTGAAGTTGAAATTGGCTCTGAATGAAACTAG
66 AG-A--G-TT-G-GCT-CGATATCATTCGTCGTGAAGTTGAAA-----TC-G--TG-GA-T-G
** * * *
3734465 GAAACCCCTTCGCCGTGAAGTTGATCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAA
1 G---CCCCTTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAA
* ** *
3734530 TCTAGAGTTGGCACGATATCATTCGTTTTGAAGTTGAAATCGGGGATG
63 TCTAGAGTTGGCTCGATATCATTCGTCGTGAAGTTGAAATCGTGGATG
* *
3734578 GCCCCTTCGTTGTGAAGTTGAGCCTTGACTTGAATATCCTTCATCGTGAAGTTGAAAT
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAAT
3734636 ACAAGTATTA
Statistics
Matches: 230, Mismatches: 46, Indels: 44
0.72 0.14 0.14
Matches are distributed among these distances:
110 104 0.45
111 1 0.00
113 3 0.01
114 3 0.01
115 3 0.01
116 24 0.10
118 1 0.00
119 2 0.01
121 2 0.01
122 1 0.00
124 24 0.10
125 2 0.01
126 3 0.01
127 3 0.01
129 1 0.00
130 53 0.23
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (110 bp):
GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAATCT
AGAGTTGGCTCGATATCATTCGTCGTGAAGTTGAAATCGTGGATG
Found at i:3734496 original size:240 final size:244
Alignment explanation
Indices: 3734064--3734640 Score: 858
Period size: 240 Copynumber: 2.4 Consensus size: 244
3734054 CACAATTCCC
* * * *
3734064 TTCATCGTAAAGTTGAAACCGTGGATGGCCCCTTCATTGTGAAGTTGAGCCTTGAATTGGATATC
1 TTCATCGTGAAGTTGAAATCGTGGATGGCCCCTTCATTGTGAAGTTGAGCCTTGACTTGAATATC
*
3734129 CTTCGTCGTGAAGTTGAAATCCAA-TTTAAAGATGAATGTTGCTTCGAGTCCAATATCCTTCGCC
66 CTTCGTCGTGAAGTTGAAATCCAAGCTT--AGAT-AA-GTTGCTTCGAGTCCAATATCCTTCGCC
* *
3734193 GTGAAGTTGAAATTGGCTCTAAATGAAACTGGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAAT
127 GTGAAGTTGAAATTGGCTCTAAATGAAACTAGGAAACCCCTTCGCCGTGAAGTTGAGCTTTGAAT
* *
3734258 TGGATATCCTTCGTCGTGAACTTGAAATCCAATCTAGAGTTGGCTCGATATCT
192 TGGATATCCTTCGTCGTGAACTTGAAATCCAATCTAGAGTTGGCACGATATCA
* * *
3734311 TTCATCGTGAAGTTGAAATCGTGGATGGCCCTTTCCTTGTGAAGTTGAGCCTTGACTTAAATATC
1 TTCATCGTGAAGTTGAAATCGTGGATGGCCCCTTCATTGTGAAGTTGAGCCTTGACTTGAATATC
* * *
3734376 ATTCGTTGTGAAGTTGAAATCCAAGCTT-G-T-A-TTGTTTCGAGTCCAATATCCTTCGCCGTGA
66 CTTCGTCGTGAAGTTGAAATCCAAGCTTAGATAAGTTGCTTCGAGTCCAATATCCTTCGCCGTGA
* *
3734437 AGTTGAAATTGGCTCTGAATGAAACTAGGAAACCCCTTCGCCGTGAAGTTGATCTTTGAATTGGA
131 AGTTGAAATTGGCTCTAAATGAAACTAGGAAACCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGA
*
3734502 TATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGTTGGCACGATATCA
196 TATCCTTCGTCGTGAACTTGAAATCCAATCTAGAGTTGGCACGATATCA
* ** * *
3734551 TTCGTTTTGAAGTTGAAATCGGGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGACTTGAATATC
1 TTCATCGTGAAGTTGAAATCGTGGATGGCCCCTTCATTGTGAAGTTGAGCCTTGACTTGAATATC
* *
3734616 CTTCATCGTGAAGTTGAAATACAAG
66 CTTCGTCGTGAAGTTGAAATCCAAG
3734641 TATTATATGT
Statistics
Matches: 300, Mismatches: 29, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
240 215 0.72
242 1 0.00
244 1 0.00
245 1 0.00
247 80 0.27
248 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (244 bp):
TTCATCGTGAAGTTGAAATCGTGGATGGCCCCTTCATTGTGAAGTTGAGCCTTGACTTGAATATC
CTTCGTCGTGAAGTTGAAATCCAAGCTTAGATAAGTTGCTTCGAGTCCAATATCCTTCGCCGTGA
AGTTGAAATTGGCTCTAAATGAAACTAGGAAACCCCTTCGCCGTGAAGTTGAGCTTTGAATTGGA
TATCCTTCGTCGTGAACTTGAAATCCAATCTAGAGTTGGCACGATATCA
Found at i:3735957 original size:96 final size:95
Alignment explanation
Indices: 3735743--3735999 Score: 329
Period size: 96 Copynumber: 2.7 Consensus size: 95
3735733 GGCTAGATGG
* * * * * *
3735743 ATCCATAAAGCC-AGTGCGTTTAACCAATTTCTCTAAAGGGACATCTCAATATCATTGTATAG-A
1 ATCCATAAAGCCGAG-GCGTTTAACCAATTGCTTTAGAGGGACAACTC-A-AGC-TT-TATTGTA
*
3735806 TATTATAATCGCCTTTATCAGGCTAGCTAAATATT
61 TATTATAATCACCTTTATCAGGCTAGCTAAATATT
*
3735841 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGATAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATTA
* *
3735906 TAATCACCTTTATCAGGCTTAGCTGAATCTT
66 TAATCACCTTTATCAGGC-TAGCTAAATATT
* * *
3735937 ATCCATAAAGTCGGGGCGTTTAACCAATTGCTTTAGAGGGGCAACTCAAGCTTTATTGTATAT
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATAT
3736000 ATGTAATATT
Statistics
Matches: 142, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
94 4 0.03
95 25 0.18
96 71 0.50
97 1 0.01
98 39 0.27
99 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (95 bp):
ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATTA
TAATCACCTTTATCAGGCTAGCTAAATATT
Found at i:3738266 original size:38 final size:37
Alignment explanation
Indices: 3738215--3738290 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 37
3738205 CATTAAACCT
*
3738215 TTTTATATTTTAAA-TTTTGTAAAAAAAATTATATAAA
1 TTTTATAATTTAAATTTTTGTAAAAAAAA-TATATAAA
* *
3738252 TTTTATGAATTTAAATTTTTTTAAAGAAAATATATAAA
1 TTTTAT-AATTTAAATTTTTGTAAAAAAAATATATAAA
3738290 T
1 T
3738291 ATTTTCCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 6 0.18
38 16 0.47
39 12 0.35
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (37 bp):
TTTTATAATTTAAATTTTTGTAAAAAAAATATATAAA
Found at i:3740405 original size:39 final size:40
Alignment explanation
Indices: 3740351--3740431 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
3740341 GAAAATCCGT
3740351 TTGGTTCACGGAATGT-AGATTACCAGTAGGAATAAAAGA
1 TTGGTTCACGGAATGTAAGATTACCAGTAGGAATAAAAGA
*
3740390 TTGGTTCACGGAATGTAAGATTACCAGTGGGAATAAAAGA
1 TTGGTTCACGGAATGTAAGATTACCAGTAGGAATAAAAGA
3740430 TT
1 TT
3740432 ACCAGGGAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 16 0.40
40 24 0.60
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.27
Consensus pattern (40 bp):
TTGGTTCACGGAATGTAAGATTACCAGTAGGAATAAAAGA
Found at i:3740441 original size:18 final size:19
Alignment explanation
Indices: 3740406--3740442 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
3740396 CACGGAATGT
3740406 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
3740426 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
3740443 TGATTACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:3743956 original size:20 final size:21
Alignment explanation
Indices: 3743931--3743970 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
3743921 CTCTACATAG
3743931 TAGTATCGATACCAT-AGGCA
1 TAGTATCGATACCATCAGGCA
3743951 TAGTATCGATACCATCAGGC
1 TAGTATCGATACCATCAGGC
3743971 CCCAACCGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (21 bp):
TAGTATCGATACCATCAGGCA
Found at i:3745252 original size:19 final size:20
Alignment explanation
Indices: 3745228--3745275 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
3745218 AATGATTTTC
* * *
3745228 TTTTGAAAGCTAAAATG-GA
1 TTTTGAAAACCAAAATGAAA
3745247 TTTTGAAAACCAAAATGAAA
1 TTTTGAAAACCAAAATGAAA
3745267 TTTTGAAAA
1 TTTTGAAAA
3745276 ATGATTTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (20 bp):
TTTTGAAAACCAAAATGAAA
Found at i:3746788 original size:20 final size:21
Alignment explanation
Indices: 3746763--3746802 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
3746753 CTCTACATAG
3746763 TAGTATCGATACCA-TAGGCA
1 TAGTATCGATACCATTAGGCA
3746783 TAGTATCGATACCATTAGGC
1 TAGTATCGATACCATTAGGC
3746803 CCCAACGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (21 bp):
TAGTATCGATACCATTAGGCA
Found at i:3748373 original size:15 final size:16
Alignment explanation
Indices: 3748348--3748396 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
3748338 AGAATTAAGT
*
3748348 ATTTGAGATTTTAGGT
1 ATTTGAGATTTTAGGG
*
3748364 A-TTGA-AATTTAGGG
1 ATTTGAGATTTTAGGG
*
3748378 ATTTGAGATTTTAGCG
1 ATTTGAGATTTTAGGG
3748394 ATT
1 ATT
3748397 AAAGATTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.30
15 8 0.30
16 11 0.41
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (16 bp):
ATTTGAGATTTTAGGG
Found at i:3749638 original size:26 final size:23
Alignment explanation
Indices: 3749586--3749669 Score: 91
Period size: 26 Copynumber: 3.5 Consensus size: 23
3749576 CGGTTTTTAA
*
3749586 AAAAAAACCGGATTTTT-TCGG-
1 AAAAAAACCGGTTTTTTATCGGT
3749607 ATAAAAAACCGGTTTTTTATCGGTTT
1 A-AAAAAACCGGTTTTTTATCGG--T
*
3749633 GAAAAAAACCGGTTTTTAATCCGGT
1 -AAAAAAACCGGTTTTTTAT-CGGT
3749658 AAAAAAACCGGT
1 AAAAAAACCGGT
3749670 CATTCAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.02
22 15 0.28
23 4 0.07
24 12 0.22
25 1 0.02
26 17 0.31
27 4 0.07
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (23 bp):
AAAAAAACCGGTTTTTTATCGGT
Found at i:3749661 original size:24 final size:22
Alignment explanation
Indices: 3749586--3749669 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
3749576 CGGTTTTTAA
3749586 AAAAAAACCGGATTTTT-TCGG-
1 AAAAAAACCGG-TTTTTATCGGT
3749607 ATAAAAAACCGGTTTTTTATCGGTTT
1 A-AAAAAACCGG-TTTTTATCGG--T
3749633 GAAAAAAACCGGTTTTTAATCCGGT
1 -AAAAAAACCGGTTTTT-AT-CGGT
3749658 AAAAAAACCGGT
1 AAAAAAACCGGT
3749670 CATTCAATTT
Statistics
Matches: 54, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
21 1 0.02
22 15 0.28
23 4 0.07
24 12 0.22
25 6 0.11
26 12 0.22
27 4 0.07
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
AAAAAAACCGGTTTTTATCGGT
Found at i:3758538 original size:32 final size:32
Alignment explanation
Indices: 3758502--3758571 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
3758492 AACTGAAGAA
3758502 ATGAAGTCCCAATTAAGTGTATCAAAAGCTTT
1 ATGAAGTCCCAATTAAGTGTATCAAAAGCTTT
3758534 ATGAAGTCCCAATTAAGTGTATCAAAAGCTTT
1 ATGAAGTCCCAATTAAGTGTATCAAAAGCTTT
3758566 ATGAAG
1 ATGAAG
3758572 ATCAATTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (32 bp):
ATGAAGTCCCAATTAAGTGTATCAAAAGCTTT
Found at i:3760812 original size:21 final size:24
Alignment explanation
Indices: 3760781--3760830 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
3760771 AAAAAAATAA
*
3760781 TTATTAAAATATT-TAA-AATATAT
1 TTATTAATAT-TTCTAATAATATAT
3760804 TTATTAATATTTCTAATAATATAT
1 TTATTAATATTTCTAATAATATAT
3760828 TTA
1 TTA
3760831 ATATTATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 2 0.08
23 12 0.50
24 10 0.42
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TTATTAATATTTCTAATAATATAT
Found at i:3760832 original size:12 final size:12
Alignment explanation
Indices: 3760789--3760838 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
3760779 AATTATTAAA
3760789 ATATTTAA-AAT
1 ATATTTAATAAT
*
3760800 ATATTTATTAAT
1 ATATTTAATAAT
3760812 AT-TTCTAATAAT
1 ATATT-TAATAAT
*
3760824 ATATTTAATATT
1 ATATTTAATAAT
3760836 ATA
1 ATA
3760839 ATAAAATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
11 9 0.27
12 22 0.67
13 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
ATATTTAATAAT
Found at i:3760982 original size:19 final size:18
Alignment explanation
Indices: 3760958--3761025 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 18
3760948 ATACTATTAA
3760958 ATTATTAATATTGAATAAT
1 ATTATTAATATT-AATAAT
3760977 ATTATTTATATATT--TAAT
1 ATTA-TTA-ATATTAATAAT
3760995 ATTAATATAATAATCTAATAAT
1 ATT-AT-TAAT-AT-TAATAAT
3761017 ATT-TTAATA
1 ATTATTAATA
3761026 AAGATATTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 17
0.71 0.00 0.29
Matches are distributed among these distances:
18 11 0.27
19 13 0.32
20 5 0.12
21 5 0.12
22 7 0.17
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (18 bp):
ATTATTAATATTAATAAT
Found at i:3761047 original size:23 final size:23
Alignment explanation
Indices: 3761021--3761065 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
3761011 AATAATATTT
3761021 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
3761044 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
3761066 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:3761179 original size:14 final size:14
Alignment explanation
Indices: 3761152--3761185 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3761142 TATTTTTATT
3761152 AATAAAATTATAAA
1 AATAAAATTATAAA
* *
3761166 AATAATATTTTAAA
1 AATAAAATTATAAA
3761180 AATAAA
1 AATAAA
3761186 TAAATTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAAATTATAAA
Found at i:3761199 original size:28 final size:30
Alignment explanation
Indices: 3761168--3761227 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 30
3761158 ATTATAAAAA
3761168 TAATATTTT-AAAAATAAATAA-ATT-ATTT
1 TAATATTTTAAAAAAT-AATAATATTAATTT
3761196 TAATATTTTAAAAAATAATAATATTAATTT
1 TAATATTTTAAAAAATAATAATATTAATTT
3761226 TA
1 TA
3761228 TGATAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 14 0.48
29 9 0.31
30 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
TAATATTTTAAAAAATAATAATATTAATTT
Found at i:3770298 original size:18 final size:19
Alignment explanation
Indices: 3770275--3770311 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
3770265 CCAATAATCC
3770275 TATTCTCA-GGTAATCTTT
1 TATTCTCACGGTAATCTTT
3770293 TATTCTCACCGGTAATCTT
1 TATTCTCA-CGGTAATCTT
3770312 ACTAAACCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (19 bp):
TATTCTCACGGTAATCTTT
Found at i:3770987 original size:3 final size:3
Alignment explanation
Indices: 3770974--3771040 Score: 66
Period size: 3 Copynumber: 22.0 Consensus size: 3
3770964 GTTTGAAACG
* *
3770974 TTA TTA TTTA TTA TTA TTA TTA -AA TTA TTA TTA TTA GTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
3771019 TTA TAAA TTA -TA TTA TTTA TTA
1 TTA T-TA TTA TTA TTA -TTA TTA
3771041 AATATTACAA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
2 3 0.06
3 42 0.79
4 8 0.15
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:3771006 original size:20 final size:21
Alignment explanation
Indices: 3770976--3771015 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3770966 TTGAAACGTT
*
3770976 ATTATTTATTATTATTATTAA
1 ATTATTTATTATTAGTATTAA
3770997 ATTA-TTATTATTAGTATTA
1 ATTATTTATTATTAGTATTA
3771016 TTATTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
ATTATTTATTATTAGTATTAA
Found at i:3771014 original size:23 final size:24
Alignment explanation
Indices: 3770974--3771018 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
3770964 GTTTGAAACG
*
3770974 TTATTATTTATTATTATTATTAAA
1 TTATTATTTATTAGTATTATTAAA
3770998 TTATTA-TTATTAGTATTATTA
1 TTATTATTTATTAGTATTATTA
3771019 TTATAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATTATTTATTAGTATTATTAAA
Found at i:3777896 original size:20 final size:19
Alignment explanation
Indices: 3777864--3777902 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
3777854 TCCAGCAAAG
*
3777864 AAAAAAAATAGAAAGAAAA
1 AAAAAAAAAAGAAAGAAAA
*
3777883 AAAAACAAAAAGAAGGAAAA
1 AAAAA-AAAAAGAAAGAAAA
3777903 TTGAATCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAGAAAGAAAA
Found at i:3780159 original size:93 final size:92
Alignment explanation
Indices: 3779992--3780169 Score: 259
Period size: 93 Copynumber: 1.9 Consensus size: 92
3779982 AGAAGACCCA
* * * * *
3779992 ATAGTATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTCGGTATGAAACCACAGAACCAA
*
3780057 TCATTGAATTTGGAAAATGAATGAGCTC
66 TCATTGAA-TTGAAAAATGAATGAGCTC
* *
3780085 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTCGGTA-GAAACCCCAGAACCGA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTCGGTATGAAACCACAGAACCAA
3780149 TCATTGGAATTGAAAAATGAA
66 TCATT-GAATTGAAAAATGAA
3780170 CTGCATGATC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
92 30 0.39
93 46 0.61
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (92 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTCGGTATGAAACCACAGAACCAA
TCATTGAATTGAAAAATGAATGAGCTC
Found at i:3782687 original size:22 final size:22
Alignment explanation
Indices: 3782658--3782712 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
3782648 ATCTACACTC
3782658 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
3782680 TTTAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
3782702 TTCAAAGATGA
1 TTCAAAGATGA
3782713 AAGCTTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:3783348 original size:76 final size:76
Alignment explanation
Indices: 3783222--3784393 Score: 2104
Period size: 76 Copynumber: 15.5 Consensus size: 76
3783212 CTATTTCCCA
*
3783222 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCAGG-AGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTC-GGAAGCTTTTTGATATTTTCA
* *
3783286 AATCATTCGGGT
65 AAGCCTTCGGGT
3783298 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3783363 AGCCTTCGGGT
66 AGCCTTCGGGT
3783374 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3783439 AGCCTTCGGGT
66 AGCCTTCGGGT
3783450 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
*
3783515 ATCCTTCGGGT
66 AGCCTTCGGGT
3783526 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAAGCCTTCGGAAGCTTTTTGATA-TTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAAGCCTTCGGAAGCTTTTTGATATTTTCA
3783590 AAGCCTTCGGGT
65 AAGCCTTCGGGT
3783602 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGC-TTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
*
3783666 ATCCTTCGGGT
66 AGCCTTCGGGT
3783677 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAAGCCTTCGGAAGCTTTTTGATATTTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAAGCCTTCGGAAGCTTTTTGATATTTTCA
3783742 AAGCCTTCGGGT
65 AAGCCTTCGGGT
3783754 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGC-TTTTGATA-TTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3783817 AGCCTTCGGGT
66 AGCCTTCGGGT
3783828 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
*
3783893 ATCCTTCGGGT
66 AGCCTTCGGGT
3783904 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
*
3783969 ATCCTTCGGGT
66 AGCCTTCGGGT
* *
3783980 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3784045 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
3784056 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3784121 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
3784132 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3784197 AGCCTTC-GGT
66 AGCCTTCGGGT
* *
3784207 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3784272 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
3784283 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
3784348 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
3784359 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
3784394 CATTTCCATC
Statistics
Matches: 1075, Mismatches: 13, Indels: 16
0.97 0.01 0.01
Matches are distributed among these distances:
74 74 0.07
75 158 0.15
76 760 0.71
77 83 0.08
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGAAGCTTTTTGATATTTTCAA
AGCCTTCGGGT
Found at i:3784527 original size:3 final size:3
Alignment explanation
Indices: 3784521--3784585 Score: 76
Period size: 3 Copynumber: 21.0 Consensus size: 3
3784511 TCATTTAAAT
** * *
3784521 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA GTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3784569 TTA TATA TTA TTTA TTA
1 TTA T-TA TTA -TTA TTA
3784586 AATATTACAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:3795026 original size:21 final size:21
Alignment explanation
Indices: 3795000--3795062 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
3794990 GTCGAGGGTT
*
3795000 TCATAGGTCCATCGGGACAAC
1 TCATAGGTCCTTCGGGACAAC
* *
3795021 TCATAGGTCCTTTGGGACATAT
1 TCATAGGTCCTTCGGGACA-AC
* *
3795043 TCACATGTCCTTCGGGACAA
1 TCATAGGTCCTTCGGGACAA
3795063 ACTTCATATG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.51
22 17 0.49
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (21 bp):
TCATAGGTCCTTCGGGACAAC
Found at i:3797853 original size:26 final size:26
Alignment explanation
Indices: 3797824--3797905 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
3797814 GAGGATAAAG
* **
3797824 TATAACATTACTACTTTCTCAAGAAT
1 TATAACATTACAACTGCCTCAAGAAT
3797850 TATAACATTACAACTGCCTCAAGAAT
1 TATAACATTACAACTGCCTCAAGAAT
3797876 TATAACATTACAACTGCCTCAAGAAT
1 TATAACATTACAACTGCCTCAAGAAT
3797902 TATA
1 TATA
3797906 TCCCAAATTC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (26 bp):
TATAACATTACAACTGCCTCAAGAAT
Found at i:3798158 original size:13 final size:12
Alignment explanation
Indices: 3798137--3798184 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
3798127 AAATGACTTG
3798137 TTTAATTTTTACA
1 TTTAATTTTTA-A
3798150 TTT-ATTTTTAAAA
1 TTTAATTTTT--AA
*
3798163 TTTATTTTTTAA
1 TTTAATTTTTAA
3798175 TTTAATTTTT
1 TTTAATTTTT
3798185 CTACCGTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
12 17 0.57
13 7 0.23
14 6 0.20
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTAATTTTTAA
Found at i:3798328 original size:13 final size:13
Alignment explanation
Indices: 3798310--3798334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3798300 TACTGTTATG
3798310 TTTTTCTTAATTT
1 TTTTTCTTAATTT
3798323 TTTTTCTTAATT
1 TTTTTCTTAATT
3798335 GAATCTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTTAATTT
Found at i:3799463 original size:31 final size:31
Alignment explanation
Indices: 3799402--3799466 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
3799392 TATATCTATA
*
3799402 ATTTTATAAAAAGAAAAATTATGATTATTAT
1 ATTTTATAAAAAGAAAAATTATGATAATTAT
* * *
3799433 ATTTTATTAAAA-TAAAATTATTATAAATTAT
1 ATTTTATAAAAAGAAAAATTATGAT-AATTAT
3799464 ATT
1 ATT
3799467 AATTATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 10 0.34
31 19 0.66
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (31 bp):
ATTTTATAAAAAGAAAAATTATGATAATTAT
Found at i:3799498 original size:17 final size:17
Alignment explanation
Indices: 3799474--3799523 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
3799464 ATTAATTATT
*
3799474 TATTAAAATAATAATAT
1 TATTAAAATAATAATAA
* * *
3799491 TGTTAAAATATTAAAAA
1 TATTAAAATAATAATAA
*
3799508 TATTAAAATAAGAATA
1 TATTAAAATAATAATA
3799524 GTATGTTATA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (17 bp):
TATTAAAATAATAATAA
Found at i:3799654 original size:29 final size:29
Alignment explanation
Indices: 3799620--3799677 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
3799610 ATTAATAATT
*
3799620 TATTATGTATTATTAA-AATAAAAGTATAA
1 TATTATATATT-TTAATAATAAAAGTATAA
* *
3799649 TATTATATATTTTAATAATATAATTATAA
1 TATTATATATTTTAATAATAAAAGTATAA
3799678 CAATAAAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (29 bp):
TATTATATATTTTAATAATAAAAGTATAA
Found at i:3801368 original size:18 final size:18
Alignment explanation
Indices: 3801345--3801389 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
3801335 CATTATCTCT
*
3801345 ATCGCACCATCACTGACC
1 ATCGCACCATCACCGACC
3801363 ATCGCACCATCACCGACC
1 ATCGCACCATCACCGACC
*
3801381 ATCACACCA
1 ATCGCACCA
3801390 CCATCGGTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.31, C:0.47, G:0.09, T:0.13
Consensus pattern (18 bp):
ATCGCACCATCACCGACC
Found at i:3801801 original size:42 final size:42
Alignment explanation
Indices: 3801742--3801826 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
3801732 GGATATATTT
3801742 TCTTTTTTAACAAATAGAATTCTCAATATTAGAGTCAACATA
1 TCTTTTTTAACAAATAGAATTCTCAATATTAGAGTCAACATA
3801784 TCTTTTTTAACAAATAGAATTCTCAATATTAGAGTCAACATA
1 TCTTTTTTAACAAATAGAATTCTCAATATTAGAGTCAACATA
3801826 T
1 T
3801827 ATTTACATGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (42 bp):
TCTTTTTTAACAAATAGAATTCTCAATATTAGAGTCAACATA
Found at i:3802228 original size:16 final size:16
Alignment explanation
Indices: 3802203--3802245 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
3802193 AACGTCTTTA
3802203 AAAAACAATTTT-TAAG
1 AAAAA-AATTTTATAAG
3802219 AAAAATAATTTTATAAG
1 AAAAA-AATTTTATAAG
*
3802236 ACAAAAATTT
1 AAAAAAATTT
3802246 GGTCTACGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (16 bp):
AAAAAAATTTTATAAG
Found at i:3804926 original size:3 final size:3
Alignment explanation
Indices: 3804918--3804981 Score: 71
Period size: 3 Copynumber: 22.0 Consensus size: 3
3804908 GCAAAAATTG
* **
3804918 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3804962 TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA
3804982 CGGAAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 5 0.10
3 43 0.84
4 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:3804973 original size:32 final size:32
Alignment explanation
Indices: 3804920--3804983 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
3804910 AAAAATTGTA
*
3804920 ATAATAAATAATAATAAAATAATAAGATAACG
1 ATAATAAATAATAATAAAATAATAAAATAACG
3804952 ATAAT-AATAATAATAATAATAATAAAATAACG
1 ATAATAAATAATAATAA-AATAATAAAATAACG
3804984 GAAAAAAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 11 0.37
32 19 0.63
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.27
Consensus pattern (32 bp):
ATAATAAATAATAATAAAATAATAAAATAACG
Found at i:3805348 original size:87 final size:91
Alignment explanation
Indices: 3805181--3805390 Score: 302
Period size: 89 Copynumber: 2.4 Consensus size: 91
3805171 CGTCTAAGGG
* * * * * * *
3805181 TGACACGGCTCCTACGTGATGAGGAAATCTGGTCATCTTTAGGGATGATAACTCGGTTCCTACGT
1 TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTTCCTACGT
3805246 AATGAGGACGACTGGTTATC-A-GGT
66 AATGAGGACGACTGGTTATCTATGGT
*
3805270 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATC-TAAAGG-TGATAACACGGTTCCTACGT
1 TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTTCCTACGT
* *
3805333 GATGAGGACGGCTGGTTATCTATGGT
66 AATGAGGACGACTGGTTATCTATGGT
3805359 TGACACGGCTCATACGTGATGAAGAGATCTGG
1 TGACACGGCTCATACGTGATGAAGAGATCTGG
3805391 TCTGGGGATG
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
87 37 0.34
88 5 0.05
89 67 0.61
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (91 bp):
TGACACGGCTCATACGTGATGAAGAGATCTGGCCATCTTAAAGGATGATAACACGGTTCCTACGT
AATGAGGACGACTGGTTATCTATGGT
Found at i:3816500 original size:17 final size:17
Alignment explanation
Indices: 3816478--3816521 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
3816468 CCTAAATTAA
3816478 TTAAATTCTAACTGCAC
1 TTAAATTCTAACTGCAC
3816495 TTAAATTCTAACTGCAC
1 TTAAATTCTAACTGCAC
*
3816512 CTAAATTCTA
1 TTAAATTCTA
3816522 TTTCACATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (17 bp):
TTAAATTCTAACTGCAC
Found at i:3817418 original size:16 final size:16
Alignment explanation
Indices: 3817393--3817435 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
3817383 AACGTCTTTA
3817393 AAAAACAATTTT-TAAG
1 AAAAA-AATTTTATAAG
3817409 AAAAATAATTTTATAAG
1 AAAAA-AATTTTATAAG
*
3817426 ACAAAAATTT
1 AAAAAAATTT
3817436 GGTCTACGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (16 bp):
AAAAAAATTTTATAAG
Found at i:3820117 original size:3 final size:3
Alignment explanation
Indices: 3820109--3820169 Score: 65
Period size: 3 Copynumber: 21.0 Consensus size: 3
3820099 GCAAAAATTG
* **
3820109 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CGA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3820153 TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA
3820170 CGGAAAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 5 0.10
3 40 0.83
4 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:3820911 original size:28 final size:28
Alignment explanation
Indices: 3820858--3820911 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
3820848 TTTGATTTGA
*
3820858 TTGGTTTGATTTCTAATAGAATGTTTTC
1 TTGGTTTGATTTCTAATAGAACGTTTTC
*
3820886 TTGGTTTGATTTCTAATATAACGTTT
1 TTGGTTTGATTTCTAATAGAACGTTT
3820912 CATATGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.22, C:0.07, G:0.17, T:0.54
Consensus pattern (28 bp):
TTGGTTTGATTTCTAATAGAACGTTTTC
Found at i:3824424 original size:12 final size:12
Alignment explanation
Indices: 3824386--3824460 Score: 54
Period size: 12 Copynumber: 6.3 Consensus size: 12
3824376 CTAATATTAA
3824386 AAATATATTATT
1 AAATATATTATT
3824398 AAAGT-TATTGCATT
1 AAA-TATATT--ATT
3824412 AAATATATTATT
1 AAATATATTATT
3824424 -AATATTATTATT
1 AAATA-TATTATT
3824436 --ATAT-TTATT
1 AAATATATTATT
*
3824445 AAA-ATTATTAAT
1 AAATA-TATTATT
3824457 AAAT
1 AAAT
3824461 GCATTTGAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 19
0.72 0.01 0.26
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 9 0.17
12 24 0.46
13 2 0.04
14 10 0.19
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (12 bp):
AAATATATTATT
Found at i:3830000 original size:20 final size:20
Alignment explanation
Indices: 3829975--3830014 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
3829965 ATTAGAAAGC
*
3829975 TTTGAGTGAGTTGAGGGATA
1 TTTGAGTGAATTGAGGGATA
*
3829995 TTTGAGTGAATTGTGGGATA
1 TTTGAGTGAATTGAGGGATA
3830015 AGTTAAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (20 bp):
TTTGAGTGAATTGAGGGATA
Found at i:3833344 original size:16 final size:16
Alignment explanation
Indices: 3833323--3833355 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
3833313 CCCTTAAGTC
3833323 ATTTGATAAAGATGCA
1 ATTTGATAAAGATGCA
3833339 ATTTGATAAAGATGCA
1 ATTTGATAAAGATGCA
3833355 A
1 A
3833356 AAAGACAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (16 bp):
ATTTGATAAAGATGCA
Found at i:3834949 original size:2 final size:2
Alignment explanation
Indices: 3834942--3834967 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3834932 GATTCTAACC
3834942 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3834968 GTATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3835588 original size:88 final size:88
Alignment explanation
Indices: 3835437--3835613 Score: 320
Period size: 88 Copynumber: 2.0 Consensus size: 88
3835427 GATTTGAGAA
3835437 AGATGCAAAAAGACATAAAAGCAATGGAGAGGCGTCGGTGGAATCTGGATTTTCAGCAAAGTTAC
1 AGATGCAAAAAGACA-AAAAGCAATGGAGAGGCGTCGGTGGAATCTGGATTTTCAGCAAAGTTA-
3835502 TATTTTGTTACTGAGCTCTTTACTC
64 TATTTTGTTACTGAGCTCTTTACTC
*
3835527 AGATGCAAAAAGAC-AAAAGCAATGGAGAGGCGTCGTTGGAATCTGGATTTTCAGCAAAGTTATA
1 AGATGCAAAAAGACAAAAAGCAATGGAGAGGCGTCGGTGGAATCTGGATTTTCAGCAAAGTTATA
3835591 TTTTGTTACTGAGCTCTTTACTC
66 TTTTGTTACTGAGCTCTTTACTC
3835614 TTAGGTTTGC
Statistics
Matches: 86, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
87 25 0.29
88 47 0.55
90 14 0.16
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (88 bp):
AGATGCAAAAAGACAAAAAGCAATGGAGAGGCGTCGGTGGAATCTGGATTTTCAGCAAAGTTATA
TTTTGTTACTGAGCTCTTTACTC
Found at i:3838302 original size:21 final size:22
Alignment explanation
Indices: 3838233--3838306 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 22
3838223 GATTCATGGA
* *
3838233 GTATCGATACTTATAT-GAACA-
1 GTATCGATAC-CATATGGAAGAG
3838254 GTATCGATACCATATGGAAGAG
1 GTATCGATACCATATGGAAGAG
* *
3838276 GAATCGATACC-TATGTGGAG-G
1 GTATCGATACCATATG-GAAGAG
3838297 GTATCGATAC
1 GTATCGATAC
3838307 ATGGGAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 4 0.09
21 28 0.62
22 13 0.29
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (22 bp):
GTATCGATACCATATGGAAGAG
Found at i:3838995 original size:21 final size:23
Alignment explanation
Indices: 3838966--3839009 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
3838956 TGAATGAAGT
*
3838966 AATTGTATGAGAA-ATG-ATATG
1 AATTATATGAGAACATGTATATG
3838987 AATTATATGAGAACATGTATATG
1 AATTATATGAGAACATGTATATG
3839010 TGAATATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 3 0.15
23 5 0.25
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (23 bp):
AATTATATGAGAACATGTATATG
Found at i:3839290 original size:28 final size:27
Alignment explanation
Indices: 3839230--3839290 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
3839220 AAGAGTCGAG
*
3839230 GGTTCTACGTGGTCCTTCGGGACATAT
1 GGTTCTACGTAGTCCTTCGGGACATAT
* *
3839257 GTGTTCTATGTAGTTCTTCGGGACATAGT
1 G-GTTCTACGTAGTCCTTCGGGACATA-T
3839286 GGTTC
1 GGTTC
3839291 CTCGGGACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 26 0.90
29 2 0.07
ACGTcount: A:0.15, C:0.18, G:0.30, T:0.38
Consensus pattern (27 bp):
GGTTCTACGTAGTCCTTCGGGACATAT
Found at i:3839295 original size:18 final size:18
Alignment explanation
Indices: 3839269--3839306 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
3839259 GTTCTATGTA
*
3839269 GTTCTTCGGGACATAGTG
1 GTTCCTCGGGACATAGTG
3839287 GTTCCTCGGGACATAGTG
1 GTTCCTCGGGACATAGTG
3839305 GT
1 GT
3839307 CATTCAGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.18, G:0.34, T:0.32
Consensus pattern (18 bp):
GTTCCTCGGGACATAGTG
Found at i:3843313 original size:21 final size:23
Alignment explanation
Indices: 3843280--3843323 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
3843270 TGAATGAAGT
*
3843280 AATTGTATGAGAA-ATG-ATATG
1 AATTATATGAGAACATGTATATG
*
3843301 AATTATATTAGAACATGTATATG
1 AATTATATGAGAACATGTATATG
3843324 TGAATATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 3 0.16
23 5 0.26
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.36
Consensus pattern (23 bp):
AATTATATGAGAACATGTATATG
Found at i:3843606 original size:18 final size:18
Alignment explanation
Indices: 3843583--3843631 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
3843573 GTTCTATGTA
3843583 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
3843601 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
* *
3843619 GCCCTTTGGGACA
1 GTCCTTCGGGACA
3843632 AATTCTACGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.33, T:0.27
Consensus pattern (18 bp):
GTCCTTCGGGACATAGTG
Found at i:3843838 original size:3 final size:3
Alignment explanation
Indices: 3843825--3843973 Score: 273
Period size: 3 Copynumber: 50.0 Consensus size: 3
3843815 AATATTAAGT
*
3843825 TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3843873 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
3843921 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3843968 TAA TAA
1 TAA TAA
3843974 GTGCATTTGT
Statistics
Matches: 141, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
2 2 0.01
3 139 0.99
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3847354 original size:5 final size:6
Alignment explanation
Indices: 3847304--3847351 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
3847294 GACACGTATT
3847304 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
3847349 ACC
1 ACC
3847352 CGAGACGGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 15 0.36
6 27 0.64
ACGTcount: A:0.29, C:0.54, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:3848134 original size:21 final size:21
Alignment explanation
Indices: 3848108--3848284 Score: 168
Period size: 21 Copynumber: 8.4 Consensus size: 21
3848098 ATTTTGGACT
*
3848108 ATCGCAACGAACTTAGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
3848129 ATCGCAATGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
3848150 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
3848171 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
3848192 ATCGCAACGAACTTGGAAAAA
1 ATCGCAACGAACTTGGAATAA
* * *
3848213 ATTGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
3848234 ATCGAAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
3848255 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
3848276 ATCGCAACG
1 ATCGCAACG
3848285 CCTATCGCAA
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
19 29 0.23
21 68 0.54
23 29 0.23
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:3848163 original size:42 final size:42
Alignment explanation
Indices: 3848104--3848480 Score: 335
Period size: 42 Copynumber: 8.7 Consensus size: 42
3848094 TGAGATTTTG
* *
3848104 GACTATCGCAACGAACTTAGAATAAATCGCAATGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
3848146 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
* *
3848188 GACTATCGCAACGAACTTGGAAAAAATTGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
3848230 GACTATCGAAACGAACTTGGAATAAATCGCAACGAACTTGGAA-TAAATC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACG--C---GAACT---TC
3848279 GCAACGCCTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
1 G--A---CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
* * *
3848326 GACTATCGCAACGTGAACTTGGACT--ATCGCAA--CGAATTTG
1 GACTATCGCAAC--GAACTTGGAATAAATCGCAACGCGAACTTC
* * * * *
3848366 GAATATATCGCAACACGAACTTTGACT--ATCCCAA--CGAACTTG
1 G-A-CTATCGC-A-ACGAACTTGGAATAAATCGCAACGCGAACTTC
* * *
3848408 GACTATCGCAATGCGAATTTGGAATAAATCGCAACGTGAACTTG
1 GACTATCGCAA--CGAACTTGGAATAAATCGCAACGCGAACTTC
*
3848452 GACTATCGCAACGAATTTGG-A-AAATCGCA
1 GACTATCGCAACGAACTTGGAATAAATCGCA
3848481 TTGCGATAGT
Statistics
Matches: 288, Mismatches: 21, Indels: 54
0.79 0.06 0.15
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 30 0.10
41 3 0.01
42 173 0.60
43 1 0.00
44 31 0.11
45 1 0.00
46 1 0.00
47 6 0.02
49 6 0.02
50 1 0.00
51 1 0.00
52 1 0.00
54 31 0.11
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
Found at i:3848297 original size:33 final size:33
Alignment explanation
Indices: 3848255--3848318 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
3848245 CTTGGAATAA
3848255 ATCGCAACGAACTTGGAATAAATCGCAACGCCT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCCT
3848288 ATCGCAACGAACTTGGAATAAATCGCAACGC
1 ATCGCAACGAACTTGGAATAAATCGCAACGC
3848319 GAACTTCGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (33 bp):
ATCGCAACGAACTTGGAATAAATCGCAACGCCT
Found at i:3848314 original size:21 final size:19
Alignment explanation
Indices: 3848286--3848472 Score: 149
Period size: 21 Copynumber: 9.0 Consensus size: 19
3848276 ATCGCAACGC
3848286 CTATCGCAACGAACTTGGA
1 CTATCGCAACGAACTTGGA
* *
3848305 ATAAATCGCAACGCGAACTTCGA
1 CT--ATCGCAA--CGAACTTGGA
3848328 CTATCGCAACGTGAACTTGGA
1 CTATCGCAAC--GAACTTGGA
*
3848349 CTATCGCAACGAATTTGGAA
1 CTATCGCAACGAACTTGG-A
* *
3848369 TATATCGCAACACGAACTTTGA
1 -CTATCGC-A-ACGAACTTGGA
*
3848391 CTATCCCAACGAACTTGGA
1 CTATCGCAACGAACTTGGA
*
3848410 CTATCGCAATGCGAATTTGGA
1 CTATCGCAA--CGAACTTGGA
*
3848431 ATAAATCGCAACGTGAACTTGGA
1 CT--ATCGCAAC--GAACTTGGA
*
3848454 CTATCGCAACGAATTTGGA
1 CTATCGCAACGAACTTGGA
3848473 AAATCGCATT
Statistics
Matches: 135, Mismatches: 17, Indels: 32
0.73 0.09 0.17
Matches are distributed among these distances:
19 35 0.26
20 2 0.01
21 62 0.46
22 2 0.01
23 34 0.25
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (19 bp):
CTATCGCAACGAACTTGGA
Found at i:3848401 original size:138 final size:135
Alignment explanation
Indices: 3848148--3848480 Score: 347
Period size: 138 Copynumber: 2.5 Consensus size: 135
3848138 CGAACTTCGA
3848148 CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAAAA
1 CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGG-AAAA
* * *
3848213 ATTGCAACGCGAACTTCGACTATCGAAACGAACTTGGAATAAATCGCAACGAACTTGGAATAAAT
65 ATCGCAAC-CGAACTTCGAATATCGAAACGAACTTGGAAT-AATCCCAACGAACTTGGAATAAAT
3848278 CGCAACGC
128 CGCAACGC
*
3848286 CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGTGAACTTGG-AC
1 CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAC--GAACTTGGAAA
* * * * * *
3848350 TATCGCAA-CGAATTTGGAATATATCGCAACACGAACTTTGACT-ATCCCAACGAACTTGGACT-
64 AATCGCAACCGAACTTCG-A-ATATCG-AA-ACGAACTTGGAATAATCCCAACGAACTTGGAATA
3848412 -ATCGC-A---
125 AATCGCAACGC
* * * *
3848418 --AT-G---CGAATTTGGAATAAATCGCAACGTGAACTTGGACTATCGCAACGAATTTGG-AAAA
1 CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAAAA
3848476 TCGCA
66 TCGCA
3848481 TTGCGATAGT
Statistics
Matches: 173, Mismatches: 16, Indels: 26
0.80 0.07 0.12
Matches are distributed among these distances:
124 14 0.08
126 40 0.23
129 1 0.01
130 2 0.01
135 1 0.01
136 12 0.07
137 1 0.01
138 81 0.47
139 2 0.01
140 19 0.11
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (135 bp):
CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAAAA
TCGCAACCGAACTTCGAATATCGAAACGAACTTGGAATAATCCCAACGAACTTGGAATAAATCGC
AACGC
Found at i:3848480 original size:63 final size:61
Alignment explanation
Indices: 3848101--3848472 Score: 311
Period size: 63 Copynumber: 6.1 Consensus size: 61
3848091 CGTTGAGATT
* * *
3848101 TTGGACTATCGCAACGAACTTAGAATAAATCGCAATGCGAACTTCGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAC
* * * * * ** *
3848162 TTGGAATAAATCGCAACGCGAACTTCGACT--ATCGCAA--CGAACTTGGAAAAAATTGCAACGC
1 TTGGACT--ATCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTCG--ACTATCGCAA--C
3848223 GAAC
58 GAAC
* * * * *
3848227 TTCGACTATCGAAACGAACTTGGAATAAATCGCAA--CGAACTTGGAATAAATCGCAACG--C
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACT--ATCGCAACGAAC
*
3848286 -----CTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGTGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAC--GAAC
* * * *
3848344 TTGGACTATCGCAACGAATTTGGAATATATCGCAACACGAACTTTGACTATCCCAACGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAC
* * *
3848405 TTGGACTATCGCAATGCGAATTTGGAATAAATCGCAACGTGAACTTGGACTATCGCAACGAAT
1 TTGGACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAC
3848468 TTGGA
1 TTGGA
3848473 AAATCGCATT
Statistics
Matches: 258, Mismatches: 28, Indels: 48
0.77 0.08 0.14
Matches are distributed among these distances:
54 37 0.14
56 11 0.04
58 1 0.00
59 1 0.00
61 46 0.18
63 142 0.55
65 20 0.08
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (61 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAC
Found at i:3848505 original size:21 final size:21
Alignment explanation
Indices: 3848476--3848528 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
3848466 ATTTGGAAAA
*
3848476 TCGCATTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCGAAGT
* *
3848497 TCGCGTTGCGATAGTTGATGT
1 TCGCGTTGCGATAGTCGAAGT
3848518 TCGCGTTGCGA
1 TCGCGTTGCGA
3848529 ATCTGGAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCGAAGT
Found at i:3848822 original size:45 final size:46
Alignment explanation
Indices: 3848756--3848879 Score: 121
Period size: 45 Copynumber: 2.8 Consensus size: 46
3848746 TTCTAATCTT
* * * * *
3848756 CTAGAGGTGCATAACACTGGCTTTAGCAATAAAATGTAAAA-AATA
1 CTAGAAGTGCCTAACATTGGCTCTAGCAATAAAATGGAAAAGAATA
* * *
3848801 CTAGAAGTGTCTAACATTGGCTCTAG-AATGCAAA-GGAAAAGAATG
1 CTAGAAGTGCCTAACATTGGCTCTAGCAAT-AAAATGGAAAAGAATA
* *
3848846 CTATAAGTGCCTAA-ATTGACTCTAGCAATAAAAT
1 CTAGAAGTGCCTAACATTGGCTCTAGCAATAAAAT
3848880 AAAGTGATGC
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
44 21 0.33
45 42 0.67
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.25
Consensus pattern (46 bp):
CTAGAAGTGCCTAACATTGGCTCTAGCAATAAAATGGAAAAGAATA
Found at i:3862980 original size:229 final size:233
Alignment explanation
Indices: 3862579--3863040 Score: 887
Period size: 229 Copynumber: 2.0 Consensus size: 233
3862569 AGCTTAAATC
3862579 GAGATGGTATGTACCCTTTGAGGTACACCAAGTATACCCCCACAAAGATGTGGACATTAAAAACT
1 GAGATGGTATGTACCCTTTGAGGTACACCAAGTATACCCCCACAAAGATGTGGACATTAAAAACT
3862644 TGGATAATGGGACTATATTCAAGGTCAATAGCCAACGGTTGAAGGCATACAACGGAGCTCCCAGC
66 TGGATAATGGGACTATATTCAAGGTCAATAGCCAACGGTTGAAGGCATACAACGGAGCTCCCAGC
*
3862709 TTGCATGACAATCCAACACTCTATTTGCAGGATGCTTGAGTTTGCTTTTCTAA-CTTTCAAA-TT
131 TTGCATGACAAGCCAACACTCTATTTGCAGGATGCTTGAGTTTGCTTTTCTAACCTTTCAAATTT
3862772 TACCATATCATTTCTA-TTT-GTATTGTGTCATAAACT
196 TACCATATCATTTCTATTTTGGTATTGTGTCATAAACT
3862808 GAGATGGTATGTACCCTTTGAGGTACACCAAGTATACCCCCACAAAGATGTGGACATTAAAAACT
1 GAGATGGTATGTACCCTTTGAGGTACACCAAGTATACCCCCACAAAGATGTGGACATTAAAAACT
3862873 TGGATAATGGGACTATATTCAAGGTCAATAGCCAACGGTTGAAGGCATACAACGGAGCTCCCAGC
66 TGGATAATGGGACTATATTCAAGGTCAATAGCCAACGGTTGAAGGCATACAACGGAGCTCCCAGC
3862938 TTGCATGACAAGCCAACACTCTATTTGCAGGATGCTTGAGTTTGCTTTTCTAACCTTTCAAATTT
131 TTGCATGACAAGCCAACACTCTATTTGCAGGATGCTTGAGTTTGCTTTTCTAACCTTTCAAATTT
3863003 TACCATATCATTTCTATTTTGGTATTGTGTCATAAACT
196 TACCATATCATTTCTATTTTGGTATTGTGTCATAAACT
3863041 TTGTTTTATT
Statistics
Matches: 228, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
229 182 0.80
230 8 0.04
231 18 0.08
232 3 0.01
233 17 0.07
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (233 bp):
GAGATGGTATGTACCCTTTGAGGTACACCAAGTATACCCCCACAAAGATGTGGACATTAAAAACT
TGGATAATGGGACTATATTCAAGGTCAATAGCCAACGGTTGAAGGCATACAACGGAGCTCCCAGC
TTGCATGACAAGCCAACACTCTATTTGCAGGATGCTTGAGTTTGCTTTTCTAACCTTTCAAATTT
TACCATATCATTTCTATTTTGGTATTGTGTCATAAACT
Found at i:3867251 original size:15 final size:15
Alignment explanation
Indices: 3867233--3867262 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3867223 TAGCTTGTTT
3867233 GTGTGAGGATTGTCA
1 GTGTGAGGATTGTCA
3867248 GTGTGAGGATTGTCA
1 GTGTGAGGATTGTCA
3867263 ATTTATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33
Consensus pattern (15 bp):
GTGTGAGGATTGTCA
Found at i:3870617 original size:440 final size:438
Alignment explanation
Indices: 3869787--3870664 Score: 1223
Period size: 440 Copynumber: 2.0 Consensus size: 438
3869777 CCCACCCTTG
* * *
3869787 ATCTTAGTGAAAACTCCTTCGTTACGTAGAAATGAATGGAAGCACCTGTGTCCACAACCTAATCA
1 ATCTTAGTGAAAACTCCCTCGTTACATAGAAATGAATGGAAACACCTGTGTCCACAACCTAATCA
* *
3869852 ACATTTTTCTTCACCAGATTTACCTCTAAAACCACCACTACGATAACATTATCAGTATTTTTCTC
66 ACATTTTTCTCCACCAAATTTACCTCTAAAACCACCACTACGATAACATTATCAGTATTTTTCTC
* * *
3869917 CAAAACATTTATATATGGTGTTTTCTCATTCAGGCAGTCGGAATGGTGTTGGCACTGGTAAGCTT
131 CAAAACATTCATATATGGTGTTTGCTCATTCAGGCAGTCGAAATGGTGTTGGCACTGGTAAGCTT
* * *
3869982 TGAGGCCGACTTGACTGTACACATAACACTTGATGGATTTTCCTTAATCTTTAGGTTTCTCATGT
196 TGAGGCCGACTTGACCGTACACATAACACTTAATGGATTTTCCTTAATCTTTAGGTTTCTCATAT
* **
3870047 CTTTTGAAGTTGGTGCCCTTCTATGGTTTGGTCTTATTATTTTGATTCCCTATTTTTACGGTCTT
261 CTTTAGAAGTTGGTGCAATTCTATGGTTTGGTCTTATTATTTTGATTCCCTATTTTTAC-GTCTT
*
3870112 TTTAAATTTAAACCCTGAGGCACCACCAAACTCAACCAGGTTAGCTTTTAAAGTCAATTGACCAA
325 TTTAAATTTAAACCCTGAGACACCACCAAACTCAACCAGGTTAGCTTTTAAAGTCAATTGACCAA
* *
3870177 TATAGTTAGTAACCTTATCTTTCAAACAGTTAGCCTTCTCTATCTTCAC
390 TAAAGTTAGTAACCTTATCTTTCAAACAGTTAGCCTCCTCTATCTTCAC
* * * * **
3870226 ATCTTAGTGAAAAACTCCCTCGTTGCATAGAAATGTATGGAAACGCCTGTGTCTATGACCTAATC
1 ATCTTAGTG-AAAACTCCCTCGTTACATAGAAATGAATGGAAACACCTGTGTCCACAACCTAATC
* * * *
3870291 AGCATTTTTCTCCACCAAATTTCCCTTTAAAACCACCACTACGATAACATTATCAGT-TTTATTT
65 AACATTTTTCTCCACCAAATTTACCTCTAAAACCACCACTACGATAACATTATCAGTATTT-TTC
* * * * **
3870355 TTCAGAACATTCAGT-TGTGGT-TTGTGCTCATTCTGGTGGTCGAAATGGTGTTGGCACTGGTAA
129 TCCAAAACATTCA-TATATGGTGTT-TGCTCATTCAGGCAGTCGAAATGGTGTTGGCACTGGTAA
* * *
3870418 GCTTTGTGGCCGACTTGACCGTACACATAGCACTTAATGTATTTT-CTATAATCTTT-GGTCTTC
192 GCTTTGAGGCCGACTTGACCGTACACATAACACTTAATGGATTTTCCT-TAATCTTTAGGT-TTC
*
3870481 -CATTATCTTTAGAAGTTGGTGCAATTCTATGGTTTGGTCTTCTTATTTTGATTCCAACT-TTTT
255 TCA-TATCTTTAGAAGTTGGTGCAATTCTATGGTTTGGTCTTATTATTTTGATTCC--CTATTTT
* * *
3870544 GTA-GTCTTTTTAAATTTAAACCCTGAGACACCATCAAACTCAACCAGGTTAGCTTTTAAATTTA
317 -TACGTCTTTTTAAATTTAAACCCTGAGACACCACCAAACTCAACCAGGTTAGCTTTTAAAGTCA
**
3870608 ATTGACCAATAAAGTTAGTAACCTTATCTTTCAAATGGTTAGCCTCCTCTATCTTCA
381 ATTGACCAATAAAGTTAGTAACCTTATCTTTCAAACAGTTAGCCTCCTCTATCTTCA
3870665 TATGGCCCAC
Statistics
Matches: 387, Mismatches: 42, Indels: 19
0.86 0.09 0.04
Matches are distributed among these distances:
439 21 0.05
440 357 0.92
441 5 0.01
442 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (438 bp):
ATCTTAGTGAAAACTCCCTCGTTACATAGAAATGAATGGAAACACCTGTGTCCACAACCTAATCA
ACATTTTTCTCCACCAAATTTACCTCTAAAACCACCACTACGATAACATTATCAGTATTTTTCTC
CAAAACATTCATATATGGTGTTTGCTCATTCAGGCAGTCGAAATGGTGTTGGCACTGGTAAGCTT
TGAGGCCGACTTGACCGTACACATAACACTTAATGGATTTTCCTTAATCTTTAGGTTTCTCATAT
CTTTAGAAGTTGGTGCAATTCTATGGTTTGGTCTTATTATTTTGATTCCCTATTTTTACGTCTTT
TTAAATTTAAACCCTGAGACACCACCAAACTCAACCAGGTTAGCTTTTAAAGTCAATTGACCAAT
AAAGTTAGTAACCTTATCTTTCAAACAGTTAGCCTCCTCTATCTTCAC
Found at i:3878154 original size:14 final size:14
Alignment explanation
Indices: 3878135--3878164 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3878125 CTTGGTTGGC
3878135 AAATAGGTTAAATT
1 AAATAGGTTAAATT
3878149 AAATAGGTTAAATT
1 AAATAGGTTAAATT
3878163 AA
1 AA
3878165 CCCTTAAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (14 bp):
AAATAGGTTAAATT
Found at i:3886349 original size:30 final size:30
Alignment explanation
Indices: 3886311--3886374 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
3886301 GGTCCCTACT
*
3886311 ATTTTGTTTTATAGTCACTCCATCCCA-TA
1 ATTTTGTTTTATAGTCACCCCATCCCATTA
*
3886340 ATTTATGTTTTATATTCACCCCATCCCATTA
1 ATTT-TGTTTTATAGTCACCCCATCCCATTA
3886371 ATTT
1 ATTT
3886375 CTTTAGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 4 0.13
30 21 0.68
31 6 0.19
ACGTcount: A:0.25, C:0.23, G:0.05, T:0.47
Consensus pattern (30 bp):
ATTTTGTTTTATAGTCACCCCATCCCATTA
Found at i:3887755 original size:19 final size:19
Alignment explanation
Indices: 3887706--3887757 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 19
3887696 TATTATTGAA
*
3887706 ATTAAA-TAAAAATTAAAG
1 ATTAAATTATAAATTAAAG
* * * *
3887724 TTTACATTTTAAATTAAGG
1 ATTAAATTATAAATTAAAG
3887743 ATTAAATTATAAATT
1 ATTAAATTATAAATT
3887758 TTAAAAGTGT
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
ATTAAATTATAAATTAAAG
Found at i:3896591 original size:110 final size:111
Alignment explanation
Indices: 3896397--3896602 Score: 351
Period size: 110 Copynumber: 1.9 Consensus size: 111
3896387 CAAAGTGCCG
* * *
3896397 AAATGGTCATTCACCTTTTATGAATACCATGAGTGGCACCTTTTATGCCGATAATGCACCATTAT
1 AAATGGTAATTCACCTTTTATGAAAACCATGAGTGGCACCTTTTATGCCGAAAATGCACCATTAT
3896462 GCATTAAACAAAATCGATCGATAACTTTCATACACAATGTTTGTTC
66 GCATTAAACAAAATCGATCGATAACTTTCATACACAATGTTTGTTC
* * *
3896508 AAATGGTAATTGACCTTTTAT-AAAACCATGGGTGGCACCTTTTATGCCGAAAATGCACCGTTAT
1 AAATGGTAATTCACCTTTTATGAAAACCATGAGTGGCACCTTTTATGCCGAAAATGCACCATTAT
3896572 GCATTAAACAAAATCGATCGATAACTTTCAT
66 GCATTAAACAAAATCGATCGATAACTTTCAT
3896603 TAGTGACACC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 70 0.79
111 19 0.21
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (111 bp):
AAATGGTAATTCACCTTTTATGAAAACCATGAGTGGCACCTTTTATGCCGAAAATGCACCATTAT
GCATTAAACAAAATCGATCGATAACTTTCATACACAATGTTTGTTC
Found at i:3903754 original size:42 final size:42
Alignment explanation
Indices: 3903706--3903850 Score: 128
Period size: 42 Copynumber: 3.4 Consensus size: 42
3903696 AAATCTGTTC
*
3903706 CACTACTCTTCCATGGAGTTCAGATTCAATGTTGGATTACTT
1 CACTACTCTTCCGTGGAGTTCAGATTCAATGTTGGATTACTT
* * * * ** * ** * * *
3903748 CACTACTTTTTCGTGAAGGTCTCATACTTTGTTGAAAAATCCGTT
1 CACTACTCTTCCGTGGAGTTCAGATTCAATGTTG--GATTAC-TT
*
3903793 CCACTACTCTTTCGTGGAGTTCAGATTCAATGTTGGATTACTT
1 -CACTACTCTTCCGTGGAGTTCAGATTCAATGTTGGATTACTT
3903836 CACTACTCTTCCGTG
1 CACTACTCTTCCGTG
3903851 AAGGTCTCAT
Statistics
Matches: 74, Mismatches: 25, Indels: 8
0.69 0.23 0.07
Matches are distributed among these distances:
42 38 0.51
43 2 0.03
44 6 0.08
45 2 0.03
46 26 0.35
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.39
Consensus pattern (42 bp):
CACTACTCTTCCGTGGAGTTCAGATTCAATGTTGGATTACTT
Found at i:3903785 original size:88 final size:88
Alignment explanation
Indices: 3903653--3903907 Score: 343
Period size: 88 Copynumber: 2.9 Consensus size: 88
3903643 CTGAATTTGC
* * * *
3903653 ATTACTCCATTACTCTTTCATGAAGG-CTTCATAGTTTGCTGAAAAATCTGTTCCACTACTCTTC
1 ATTACTTCACTACTCTTTCGTGAAGGTC-TCATACTTTGCTGAAAAATCTGTTCCACTACTCTTC
*
3903717 CATGGAGTTCAGATTCAATGTTGG
65 CGTGGAGTTCAGATTCAATGTTGG
* * * *
3903741 ATTACTTCACTACTTTTTCGTGAAGGTCTCATACTTTGTTGAAAAATCCGTTCCACTACTCTTTC
1 ATTACTTCACTACTCTTTCGTGAAGGTCTCATACTTTGCTGAAAAATCTGTTCCACTACTCTTCC
3903806 GTGGAGTTCAGATTCAATGTTGG
66 GTGGAGTTCAGATTCAATGTTGG
* * * * *
3903829 ATTACTTCACTACTCTTCCGTGAAGGTCTCATATTTTGCTAAAAAAT-TCATTCTACTACTCTTC
1 ATTACTTCACTACTCTTTCGTGAAGGTCTCATACTTTGCTGAAAAATCT-GTTCCACTACTCTTC
*
3903893 CGTGGAGTTTAGATT
65 CGTGGAGTTCAGATT
3903908 TTGTTATTGC
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
88 145 0.99
89 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (88 bp):
ATTACTTCACTACTCTTTCGTGAAGGTCTCATACTTTGCTGAAAAATCTGTTCCACTACTCTTCC
GTGGAGTTCAGATTCAATGTTGG
Found at i:3903827 original size:46 final size:46
Alignment explanation
Indices: 3903692--3903827 Score: 118
Period size: 46 Copynumber: 3.0 Consensus size: 46
3903682 CATAGTTTGC
* * *
3903692 TGAAAAATCTGTTCCACTACTCTTCCATGGAGTTCAGATTCAATGT
1 TGAAAAATCCGTTCCACTACTCTTTCGTGGAGTTCAGATTCAATGT
* * * * * * ** * **
3903738 TG--GATTAC-TT-CACTACTTTTTCGTGAAGGTCTCATACTTTGT
1 TGAAAAATCCGTTCCACTACTCTTTCGTGGAGTTCAGATTCAATGT
3903780 TGAAAAATCCGTTCCACTACTCTTTCGTGGAGTTCAGATTCAATGT
1 TGAAAAATCCGTTCCACTACTCTTTCGTGGAGTTCAGATTCAATGT
3903826 TG
1 TG
3903828 GATTACTTCA
Statistics
Matches: 61, Mismatches: 25, Indels: 8
0.65 0.27 0.09
Matches are distributed among these distances:
42 24 0.39
43 2 0.03
44 5 0.08
45 2 0.03
46 28 0.46
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (46 bp):
TGAAAAATCCGTTCCACTACTCTTTCGTGGAGTTCAGATTCAATGT
Found at i:3904113 original size:20 final size:20
Alignment explanation
Indices: 3904085--3904166 Score: 119
Period size: 20 Copynumber: 4.1 Consensus size: 20
3904075 AGACTGGCAT
*
3904085 ATGACCCAAAGGATTTACAA
1 ATGACCCAAAGGCTTTACAA
* * *
3904105 ATTACCCAAAGGCTTTATAG
1 ATGACCCAAAGGCTTTACAA
3904125 ATGACCCAAAGGCTTTACAA
1 ATGACCCAAAGGCTTTACAA
*
3904145 ATGACCCGAAGGCTTTACAA
1 ATGACCCAAAGGCTTTACAA
3904165 AT
1 AT
3904167 TTGTGGGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (20 bp):
ATGACCCAAAGGCTTTACAA
Found at i:3904799 original size:22 final size:22
Alignment explanation
Indices: 3904774--3904847 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
3904764 AAACCTTTTG
3904774 TCTTTGAAAAGAGAATCTATCA
1 TCTTTGAAAAGAGAATCTATCA
*
3904796 TCTTTGAATAGAGAATCTATCA
1 TCTTTGAAAAGAGAATCTATCA
*
3904818 TCTTTG--AAGCATGAATATATCA
1 TCTTTGAAAAG-A-GAATCTATCA
3904840 TCTTTGAA
1 TCTTTGAA
3904848 GAATATAGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
20 2 0.04
21 1 0.02
22 42 0.93
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (22 bp):
TCTTTGAAAAGAGAATCTATCA
Found at i:3904859 original size:22 final size:22
Alignment explanation
Indices: 3904791--3904859 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
3904781 AAAGAGAATC
* **
3904791 TATCATCTTTGAATAGA-GAATC
1 TATCATCTTTGAAGA-ATGAAGA
* *
3904813 TATCATCTTTGAAGCATGAATA
1 TATCATCTTTGAAGAATGAAGA
3904835 TATCATCTTTGAAGAAT-ATAGA
1 TATCATCTTTGAAGAATGA-AGA
3904857 TAT
1 TAT
3904860 GAATATGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 2 0.05
22 38 0.95
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (22 bp):
TATCATCTTTGAAGAATGAAGA
Found at i:3909904 original size:19 final size:19
Alignment explanation
Indices: 3909875--3909923 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
3909865 CACTGATCAT
3909875 AAAACCCTTTGTTCATAATG
1 AAAA-CCTTTGTTCATAATG
*
3909895 AAAACCTTTGTTCATAGTG
1 AAAACCTTTGTTCATAATG
3909914 AAAACCTTTG
1 AAAACCTTTG
3909924 ATTTTGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (19 bp):
AAAACCTTTGTTCATAATG
Found at i:3911168 original size:14 final size:15
Alignment explanation
Indices: 3911143--3911171 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3911133 TTACTAACCC
3911143 TATTATAATATTAAA
1 TATTATAATATTAAA
3911158 TATTA-AATATTAAA
1 TATTATAATATTAAA
3911172 ACTATATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTATAATATTAAA
Found at i:3916329 original size:23 final size:22
Alignment explanation
Indices: 3916277--3916330 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
3916267 AATATTTCAC
3916277 ATTAATAAATAACAAAAACTAA
1 ATTAATAAATAACAAAAACTAA
* *
3916299 ATAAAATAAATAAGACAAAA-TAAA
1 AT-TAATAAATAACA-AAAACT-AA
3916323 ATTAATAA
1 ATTAATAA
3916331 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (22 bp):
ATTAATAAATAACAAAAACTAA
Found at i:3920042 original size:24 final size:24
Alignment explanation
Indices: 3919934--3920044 Score: 107
Period size: 24 Copynumber: 4.6 Consensus size: 24
3919924 GTAAACGGAG
* *
3919934 ATATCAGAAATCAAAACAGAATTC
1 ATATCAGAAATCAGAACAAAATTC
* * *
3919958 AAATCAGATATCAGAACAAAATCC
1 ATATCAGAAATCAGAACAAAATTC
*
3919982 ATATCAGAAATCAGAACAGAATTC
1 ATATCAGAAATCAGAACAAAATTC
** *
3920006 AGGTCATG-TATCAGAACAAAATTC
1 ATATCA-GAAATCAGAACAAAATTC
* *
3920030 ATGTCGGAAATCAGA
1 ATATCAGAAATCAGA
3920045 TAAAATATTT
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
23 1 0.01
24 67 0.97
25 1 0.01
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAAAATTC
Found at i:3920043 original size:48 final size:48
Alignment explanation
Indices: 3919934--3920044 Score: 152
Period size: 48 Copynumber: 2.3 Consensus size: 48
3919924 GTAAACGGAG
*
3919934 ATATCAGAAATCAAAACAGAATTCAAATCAGATATCAGAACAAAATCC
1 ATATCAGAAATCAGAACAGAATTCAAATCAGATATCAGAACAAAATCC
** *
3919982 ATATCAGAAATCAGAACAGAATTCAGGTCATG-TATCAGAACAAAATTC
1 ATATCAGAAATCAGAACAGAATTCAAATCA-GATATCAGAACAAAATCC
* *
3920030 ATGTCGGAAATCAGA
1 ATATCAGAAATCAGA
3920045 TAAAATATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 55 0.98
49 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (48 bp):
ATATCAGAAATCAGAACAGAATTCAAATCAGATATCAGAACAAAATCC
Found at i:3924448 original size:24 final size:24
Alignment explanation
Indices: 3924421--3924492 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
3924411 AAACGGAGAT
*
3924421 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCATAACAGAATTCAG
* *
3924445 ATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCATAACAGAATTCAG
3924469 ATCAGAAATCATAACAGAATTCAG
1 ATCAGAAATCATAACAGAATTCAG
3924493 GCCATGTATC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.19
Consensus pattern (24 bp):
ATCAGAAATCATAACAGAATTCAG
Found at i:3924450 original size:12 final size:12
Alignment explanation
Indices: 3924423--3924492 Score: 52
Period size: 12 Copynumber: 5.8 Consensus size: 12
3924413 ACGGAGATAT
* *
3924423 CAGAAATCAAAA
1 CAGAATTCAGAA
*
3924435 CAGAATTCAGAT
1 CAGAATTCAGAA
*
3924447 CAG-ATATCATAA
1 CAGAAT-TCAGAA
* *
3924459 CAGAATCCAGAT
1 CAGAATTCAGAA
* *
3924471 CAGAAATCATAA
1 CAGAATTCAGAA
3924483 CAGAATTCAG
1 CAGAATTCAG
3924493 GCCATGTATC
Statistics
Matches: 42, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
11 2 0.05
12 38 0.90
13 2 0.05
ACGTcount: A:0.50, C:0.19, G:0.13, T:0.19
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:3924525 original size:48 final size:48
Alignment explanation
Indices: 3924421--3924527 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
3924411 AAACGGAGAT
* * * *
3924421 ATCAGAAATCAAAACAGAATTCAGATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAGACCAGATATCAGAACAAAATCAAG
* *
3924469 ATCAGAAATCATAACAGAATTCAGGCCATG-TATCAGAACAAAATTCAAG
1 ATCAGAAATCAAAACAGAATTCAGACCA-GATATCAGAACAAAA-TCAAG
*
3924518 -TCGGAAATCA
1 ATCAGAAATCA
3924528 GATAAAATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 45 0.90
49 5 0.10
ACGTcount: A:0.48, C:0.19, G:0.14, T:0.20
Consensus pattern (48 bp):
ATCAGAAATCAAAACAGAATTCAGACCAGATATCAGAACAAAATCAAG
Found at i:3928271 original size:21 final size:20
Alignment explanation
Indices: 3928235--3928287 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
3928225 TTGATATGAG
*
3928235 TATCGATACTACAAGAATAA
1 TATCGATACTACAAGAACAA
3928255 TATCGATACTCACAAGAACAA
1 TATCGATACT-ACAAGAACAA
*
3928276 TATTGATACTAC
1 TATCGATACTAC
3928288 GACCAAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.26
Consensus pattern (20 bp):
TATCGATACTACAAGAACAA
Found at i:3929549 original size:14 final size:14
Alignment explanation
Indices: 3929525--3929580 Score: 94
Period size: 14 Copynumber: 3.9 Consensus size: 14
3929515 AATAAATGCA
3929525 ATGCAGAATGCAAAG
1 ATGC-GAATGCAAAG
3929540 ATGCGAATGCAAAG
1 ATGCGAATGCAAAG
3929554 ATGCGAATGCAAAG
1 ATGCGAATGCAAAG
*
3929568 ATGCAAATGCAAA
1 ATGCGAATGCAAA
3929581 TGTAAAAGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
14 36 0.90
15 4 0.10
ACGTcount: A:0.46, C:0.14, G:0.25, T:0.14
Consensus pattern (14 bp):
ATGCGAATGCAAAG
Found at i:3936174 original size:8 final size:8
Alignment explanation
Indices: 3936161--3936191 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
3936151 GTGTAAAGAG
3936161 TAATAACA
1 TAATAACA
3936169 TAATAACA
1 TAATAACA
3936177 TAATAACA
1 TAATAACA
3936185 T-ATAACA
1 TAATAACA
3936192 ATAACAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (8 bp):
TAATAACA
Found at i:3936356 original size:31 final size:31
Alignment explanation
Indices: 3936318--3936438 Score: 172
Period size: 31 Copynumber: 3.9 Consensus size: 31
3936308 GAAGGACCAG
* * *
3936318 TCCATATGTTCCGAAAAACATATGTAATCAA
1 TCCATATGTCCCGAAGAACATAGGTAATCAA
*
3936349 TCCATATGTCCCGAAGAACATAGGTAAACAA
1 TCCATATGTCCCGAAGAACATAGGTAATCAA
*
3936380 TCCATATGTCCCGAAGAACATAGGTAAAT-AG
1 TCCATATGTCCCGAAGAACATAGGT-AATCAA
*
3936411 TTCATATGTCCCGAAGAACATAGGTAAT
1 TCCATATGTCCCGAAGAACATAGGTAAT
3936439 ACTTGACTCT
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
30 3 0.04
31 77 0.94
32 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.25
Consensus pattern (31 bp):
TCCATATGTCCCGAAGAACATAGGTAATCAA
Found at i:3937124 original size:19 final size:17
Alignment explanation
Indices: 3937100--3937142 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
3937090 TAAGGGGTGC
3937100 ATCGATACACTTCATGTGT
1 ATCGATACACTT-AT-TGT
3937119 ATCGATACACTTATTGT
1 ATCGATACACTTATTGT
3937136 ATTCGAT
1 A-TCGAT
3937143 GTTTCTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 7 0.30
19 12 0.52
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (17 bp):
ATCGATACACTTATTGT
Found at i:3938527 original size:21 final size:21
Alignment explanation
Indices: 3938501--3938554 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
3938491 TAATGCAGGG
3938501 AGTATCGGTACTGATAGACGA
1 AGTATCGGTACTGATAGACGA
3938522 AGTATCGGTACTGATAGACGA
1 AGTATCGGTACTGATAGACGA
*
3938543 AGTATCGATACT
1 AGTATCGGTACT
3938555 ACAAACTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (21 bp):
AGTATCGGTACTGATAGACGA
Found at i:3939845 original size:14 final size:14
Alignment explanation
Indices: 3939828--3939868 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
3939818 ACATTTTCCA
3939828 GAAAATGAATT-CTG
1 GAAAATGAATTAC-G
3939842 GAAAATGAATTACG
1 GAAAATGAATTACG
3939856 GAAAATGAATTAC
1 GAAAATGAATTAC
3939869 ATTTATAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 25 0.96
15 1 0.04
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.24
Consensus pattern (14 bp):
GAAAATGAATTACG
Found at i:3939909 original size:28 final size:28
Alignment explanation
Indices: 3939877--3939931 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
3939867 ACATTTATAG
3939877 AAAACATTTTTCAAAAAACAATTTCCAA
1 AAAACATTTTTCAAAAAACAATTTCCAA
*
3939905 AAAACATTTTTCAAAAAACATTTTCCA
1 AAAACATTTTTCAAAAAACAATTTCCA
3939932 TTGTTTGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (28 bp):
AAAACATTTTTCAAAAAACAATTTCCAA
Found at i:3939929 original size:13 final size:14
Alignment explanation
Indices: 3939877--3939928 Score: 86
Period size: 14 Copynumber: 3.7 Consensus size: 14
3939867 ACATTTATAG
3939877 AAAACATTTTTCAA
1 AAAACATTTTTCAA
* *
3939891 AAAACAATTTCCAA
1 AAAACATTTTTCAA
3939905 AAAACATTTTTCAA
1 AAAACATTTTTCAA
3939919 AAAACATTTT
1 AAAACATTTT
3939929 CCATTGTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAACATTTTTCAA
Found at i:3940311 original size:168 final size:168
Alignment explanation
Indices: 3940077--3940413 Score: 629
Period size: 168 Copynumber: 2.0 Consensus size: 168
3940067 TAAATTTTAC
3940077 AACATTTTTAATATAAAATTCAATGTTATATTTCTGTAAGTATGTCAAATAAAATTTATAGATAA
1 AACATTTTTAATATAAAATTCAATGTTATATTTCTGTAAGTATGTCAAATAAAATTTATAGATAA
3940142 TATAAATAATTTATTGATTTAAATACAATAAAATAGATTAACTAATATAATTTAATACCTTTAAA
66 TATAAATAATTTATTGATTTAAATACAATAAAATAGATTAACTAATATAATTTAATACCTTTAAA
* *
3940207 TGTAGATACGTGGACAACAAAATTGAAAGCACTTGTAA
131 AGTAGATACGTGGACAAAAAAATTGAAAGCACTTGTAA
3940245 AACATTTTTAATATAAAATTCAATGTTATATTTCTGTAAGTATGTCAAATAAAATTTATAGATAA
1 AACATTTTTAATATAAAATTCAATGTTATATTTCTGTAAGTATGTCAAATAAAATTTATAGATAA
* *
3940310 TATAAATAATTTATTGATTTCAATACAATAAAATAGATTAACTAATATAATTTAATACTTTTAAA
66 TATAAATAATTTATTGATTTAAATACAATAAAATAGATTAACTAATATAATTTAATACCTTTAAA
*
3940375 AGTAGATACGTGGACAAAAAAATTGGAAGCACTTGTAA
131 AGTAGATACGTGGACAAAAAAATTGAAAGCACTTGTAA
3940413 A
1 A
3940414 TGATTTCAAC
Statistics
Matches: 164, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
168 164 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (168 bp):
AACATTTTTAATATAAAATTCAATGTTATATTTCTGTAAGTATGTCAAATAAAATTTATAGATAA
TATAAATAATTTATTGATTTAAATACAATAAAATAGATTAACTAATATAATTTAATACCTTTAAA
AGTAGATACGTGGACAAAAAAATTGAAAGCACTTGTAA
Found at i:3941988 original size:99 final size:99
Alignment explanation
Indices: 3941824--3942014 Score: 294
Period size: 99 Copynumber: 1.9 Consensus size: 99
3941814 ATATATAAAC
* * * *
3941824 ACCTTTATCAGGTTAGCTGAATCTTATCTATAAAGTCGGGGCGTTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCCTTAGAGGG
* *
3941889 ATAGCTCAAGCTTTATTGTATATATATTATAATA
66 ATAGCTCAAACTTTATTGCATATATATTATAATA
*
3941923 ACCTTTATCAGGCTAGCTTAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTG-CTCTAGAGG
1 ACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCCT-TAGAGG
*
3941987 GATAGTTCAAACTTTATTGCATATATAT
65 GATAGCTCAAACTTTATTGCATATATAT
3942015 AATATTATAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 2 0.02
99 81 0.98
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (99 bp):
ACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCGTTTAACCAATTGCCTTAGAGGG
ATAGCTCAAACTTTATTGCATATATATTATAATA
Found at i:3944999 original size:6 final size:6
Alignment explanation
Indices: 3944988--3945013 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
3944978 ATCGAATAAA
3944988 TAAATT TAAATT TAAATT TAAATT TA
1 TAAATT TAAATT TAAATT TAAATT TA
3945014 CTATTTTCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAAATT
Done.