Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5962497
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 30
Found at i:3945452 original size:21 final size:20
Alignment explanation
Indices: 3945423--3945461 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
3945413 GTTAGTTTGT
* *
3945423 AAAAAAATATACATATATGA
1 AAAAAAATAAAAATATATGA
3945443 AAAAAGAATAAAAATATAT
1 AAAAA-AATAAAAATATAT
3945462 TAATATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAAAATAAAAATATATGA
Found at i:3945518 original size:13 final size:13
Alignment explanation
Indices: 3945480--3945531 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
3945470 TAATGATAAT
* *
3945480 AAAATAAATGAAA
1 AAAATAAAAGTAA
3945493 AAAATAAAA--AA
1 AAAATAAAAGTAA
3945504 AAAATAAAAGTAA
1 AAAATAAAAGTAA
**
3945517 AAGGTAAAAGTAA
1 AAAATAAAAGTAA
3945530 AA
1 AA
3945532 GAAATAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 11 0.32
13 23 0.68
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAATAAAAGTAA
Found at i:3945549 original size:10 final size:9
Alignment explanation
Indices: 3945477--3945572 Score: 61
Period size: 9 Copynumber: 10.2 Consensus size: 9
3945467 TAATAATGAT
*
3945477 AATAAAATA
1 AATAAAAAA
*
3945486 AATGAAAAA
1 AATAAAAAA
3945495 AATAAAAAA
1 AATAAAAAA
*
3945504 AA-AATAAA
1 AATAAAAAA
*
3945512 AGTAAAAGGTAA
1 AATAAAA---AA
*
3945524 AAGTAAAAGA
1 AA-TAAAAAA
3945534 AATAAAAAA
1 AATAAAAAA
*
3945543 AAT-TAAAA
1 AATAAAAAA
*
3945551 ACTAAAAAA
1 AATAAAAAA
3945560 AATGAAAGAAA
1 AAT-AAA-AAA
3945571 AA
1 AA
3945573 AATAGTTAAA
Statistics
Matches: 66, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
8 12 0.18
9 35 0.53
10 6 0.09
11 5 0.08
12 3 0.05
13 5 0.08
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (9 bp):
AATAAAAAA
Found at i:3945692 original size:17 final size:17
Alignment explanation
Indices: 3945663--3945695 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3945653 TTTAACAAAT
3945663 TAAAAAAAGAATAAAAA
1 TAAAAAAAGAATAAAAA
3945680 TAAATAAAA-AATAAAA
1 TAAA-AAAAGAATAAAA
3945696 GAAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (17 bp):
TAAAAAAAGAATAAAAA
Found at i:3945706 original size:18 final size:20
Alignment explanation
Indices: 3945685--3945721 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3945675 AAAAATAAAT
3945685 AAAAAA-TAAA-AGAAAAGA
1 AAAAAATTAAAGAGAAAAGA
3945703 AAAAAATTAAAGAGAAAAG
1 AAAAAATTAAAGAGAAAAG
3945722 CGAAATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (20 bp):
AAAAAATTAAAGAGAAAAGA
Found at i:3946654 original size:12 final size:12
Alignment explanation
Indices: 3946634--3946672 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
3946624 TCCTCCTCTT
3946634 TTTTC-TGTGTA
1 TTTTCGTGTGTA
3946645 TTTTCGTGTGTA
1 TTTTCGTGTGTA
*
3946657 TTTTCGTATGTA
1 TTTTCGTGTGTA
3946669 TTTT
1 TTTT
3946673 TTTGCCTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 5 0.19
12 21 0.81
ACGTcount: A:0.10, C:0.08, G:0.18, T:0.64
Consensus pattern (12 bp):
TTTTCGTGTGTA
Found at i:3946853 original size:47 final size:47
Alignment explanation
Indices: 3946801--3946894 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
3946791 TTTATAGTAG
*
3946801 CAAAAACCTATCTCCGTGTAGTTTTAGAACTCTAACGAGACTGAAAT
1 CAAAAACCTATCTCCGTGTAGTTTCAGAACTCTAACGAGACTGAAAT
3946848 CAAAAACCTATCTCCGTGTAGTTTCAGAACTCTAACGAGACTGAAAT
1 CAAAAACCTATCTCCGTGTAGTTTCAGAACTCTAACGAGACTGAAAT
3946895 GCTTGTTGGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CAAAAACCTATCTCCGTGTAGTTTCAGAACTCTAACGAGACTGAAAT
Found at i:3947842 original size:104 final size:105
Alignment explanation
Indices: 3947659--3947848 Score: 265
Period size: 104 Copynumber: 1.8 Consensus size: 105
3947649 TTTGAAACTA
* * * * * *
3947659 AAAATATATTTTGTGACTATCAGTATTGTCACACCAAGTATTATTTCAGTGATCAAATGTTCGAC
1 AAAATATATTTTGGGACCAACAATATTGTCACACCAAGTATTATTTCAGTGACCAAATGTTCAAC
*
3947724 ACTATTATTAATAG-AATTGTATTGATTTTGTTGGACTTT
66 ACTATTATCAATAGAAATTGTATTGATTTTGTTGGACTTT
* * *
3947763 AAAATTTATTTTGGGACCAACAATATTGTCACACTAAGTATTATTTTAGTGACCAAATGTTCAAC
1 AAAATATATTTTGGGACCAACAATATTGTCACACCAAGTATTATTTCAGTGACCAAATGTTCAAC
* *
3947828 AGTATTATCGATAGAAATTGT
66 ACTATTATCAATAGAAATTGT
3947849 GATGAATTTA
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
104 67 0.92
105 6 0.08
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39
Consensus pattern (105 bp):
AAAATATATTTTGGGACCAACAATATTGTCACACCAAGTATTATTTCAGTGACCAAATGTTCAAC
ACTATTATCAATAGAAATTGTATTGATTTTGTTGGACTTT
Found at i:3954447 original size:30 final size:30
Alignment explanation
Indices: 3954391--3954518 Score: 136
Period size: 30 Copynumber: 4.3 Consensus size: 30
3954381 CTTAGTAAAA
* * * *
3954391 TAAAGGACT-AAATAGTAATAACAGAAAGT
1 TAAAGGACTAAAATAGCAAAAATAGAAACT
3954420 TAAAGGACTAAAATAG-AAAAAGTAGAAACT
1 TAAAGGACTAAAATAGCAAAAA-TAGAAACT
* *
3954450 TAAATGACTAAAATAGCAAAAGTAGAAACT
1 TAAAGGACTAAAATAGCAAAAATAGAAACT
**
3954480 TAAAAAAAC-AAAATAGCAAAAATAGAAACT
1 T-AAAGGACTAAAATAGCAAAAATAGAAACT
*
3954510 TATAGGACT
1 TAAAGGACT
3954519 TAACCAGTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
29 17 0.20
30 57 0.69
31 9 0.11
ACGTcount: A:0.59, C:0.09, G:0.14, T:0.19
Consensus pattern (30 bp):
TAAAGGACTAAAATAGCAAAAATAGAAACT
Found at i:3956474 original size:30 final size:29
Alignment explanation
Indices: 3956438--3956509 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 29
3956428 TCAATTATGA
3956438 TGTTTCAAGATAAACAGACTCAAAGACTTT
1 TGTTTCAAGATAAACAGACTCAAAGA-TTT
*
3956468 TGTTTCAAGAGAAACAGACTCAAAGATTT
1 TGTTTCAAGATAAACAGACTCAAAGATTT
**
3956497 TCCTTCAAGATAA
1 TGTTTCAAGATAA
3956510 GTTGTCTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
29 13 0.34
30 25 0.66
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (29 bp):
TGTTTCAAGATAAACAGACTCAAAGATTT
Found at i:3956567 original size:63 final size:65
Alignment explanation
Indices: 3956521--3956648 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 65
3956511 TTGTCTCAAT
**
3956521 AGACAAAATTTGTTTCAAGGGAAACAGTCTCAAAGATGGTGTTTCAAAAGAAACTATCTCAAAGG
1 AGACAAAATTTGTTTCAAGGGAAACAGTCTCAAAGATCTTGTTTCAAAAGAAACTATCTCAAAGG
* * *
3956586 AGACAAAATTCGTTTCAAGGGAAAC-GATCTCAAAGATCTTGTTTC-AAAGAAACAATTTCAAAG
1 AGACAAAATTTGTTTCAAGGGAAACAG-TCTCAAAGATCTTGTTTCAAAAGAAACTATCTCAAAG
3956649 TTTATCTTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
64 17 0.30
65 40 0.70
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (65 bp):
AGACAAAATTTGTTTCAAGGGAAACAGTCTCAAAGATCTTGTTTCAAAAGAAACTATCTCAAAGG
Found at i:3956700 original size:91 final size:89
Alignment explanation
Indices: 3956573--3956781 Score: 253
Period size: 89 Copynumber: 2.3 Consensus size: 89
3956563 TTCAAAAGAA
* * * * *
3956573 ACTATCTCAAAG-GAGACAAAATTCGTTTCAAGGGAAA-CGATCTCAAAGATCTTGTTTCAA-AG
1 ACTATCTC-AAGTGAGACAAAATTTGTTTTAAAGGAAATAGA-CTCAAAGA--TT-TTGCAAGAG
*
3956635 AAACAATTTCAAAGTTTATCTTAAGGAAG
61 AAACAATTTCAAAGTTTATCTTAAGAAAG
*
3956664 ATTATCTCAAGTGAGACAAAATTTGTTTTAAAGGAAATAGACTCAAAGATTTTGCAAGAGAAACA
1 ACTATCTCAAGTGAGACAAAATTTGTTTTAAAGGAAATAGACTCAAAGATTTTGCAAGAGAAACA
*
3956729 ATTTCAAAGTTTGTCTTAAGAAAG
66 ATTTCAAAGTTTATCTTAAGAAAG
* * *
3956753 ACTATTTCAAGTGAGGCAAAGTTTGTTTT
1 ACTATCTCAAGTGAGACAAAATTTGTTTT
3956782 GAGAACAACA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
88 5 0.05
89 56 0.54
90 3 0.03
91 37 0.36
92 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (89 bp):
ACTATCTCAAGTGAGACAAAATTTGTTTTAAAGGAAATAGACTCAAAGATTTTGCAAGAGAAACA
ATTTCAAAGTTTATCTTAAGAAAG
Found at i:3957044 original size:31 final size:32
Alignment explanation
Indices: 3957009--3957072 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
3956999 TTCATATCAG
*
3957009 GATGTTGAATCTCC-AAGATGCCCCAACATTC
1 GATGTTAAATCTCCAAAGATGCCCCAACATTC
*
3957040 GATGTTAAATCTCCAAAGATGCCCCATCATTC
1 GATGTTAAATCTCCAAAGATGCCCCAACATTC
3957072 G
1 G
3957073 TCGTTTCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (32 bp):
GATGTTAAATCTCCAAAGATGCCCCAACATTC
Found at i:3960377 original size:31 final size:30
Alignment explanation
Indices: 3960336--3960396 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
3960326 ATGAAAAATG
*
3960336 ACACATACAAAAGAAAATAAAT-AAGTTAGTA
1 ACACAAACAAAAGAAAA-AAATGAA-TTAGTA
*
3960367 ACACAAACAAAAGAGAAAAATGAATTAGTA
1 ACACAAACAAAAGAAAAAAATGAATTAGTA
3960397 CCAGCAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.62, C:0.10, G:0.11, T:0.16
Consensus pattern (30 bp):
ACACAAACAAAAGAAAAAAATGAATTAGTA
Found at i:3963312 original size:14 final size:14
Alignment explanation
Indices: 3963293--3963328 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
3963283 CCTCTATTCA
3963293 AACATAAATGAATG
1 AACATAAATGAATG
*
3963307 AACATACATGAATG
1 AACATAAATGAATG
3963321 AACATAAA
1 AACATAAA
3963329 CGAACATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.19
Consensus pattern (14 bp):
AACATAAATGAATG
Found at i:3967460 original size:17 final size:17
Alignment explanation
Indices: 3967438--3967499 Score: 106
Period size: 17 Copynumber: 3.6 Consensus size: 17
3967428 ATCTTGTGTT
3967438 AGGGTATCGATACTCTC
1 AGGGTATCGATACTCTC
*
3967455 AGGGTATCGATACACTC
1 AGGGTATCGATACTCTC
3967472 AGGGTATCGATACTCTC
1 AGGGTATCGATACTCTC
*
3967489 TGGGTATCGAT
1 AGGGTATCGAT
3967500 GCCAAATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (17 bp):
AGGGTATCGATACTCTC
Found at i:3971541 original size:14 final size:15
Alignment explanation
Indices: 3971512--3971543 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3971502 AAATAATTGC
3971512 AATAATATATTTTAT
1 AATAATATATTTTAT
3971527 AATAATATA-TTTAT
1 AATAATATATTTTAT
3971541 AAT
1 AAT
3971544 TATTTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATAATATATTTTAT
Found at i:3971622 original size:21 final size:21
Alignment explanation
Indices: 3971598--3971637 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
3971588 TTTATAACAT
3971598 TTTTAATAAT-TAAACAATATA
1 TTTTAATAATATAAA-AATATA
3971619 TTTTAATAATATAAAAATA
1 TTTTAATAATATAAAAATA
3971638 AAAATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTTAATAATATAAAAATATA
Found at i:3973780 original size:18 final size:20
Alignment explanation
Indices: 3973757--3973794 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
3973747 GACCTTAAAA
3973757 ATTTTAATT-T-TTTTATAT
1 ATTTTAATTATATTTTATAT
*
3973775 ATTTTATTTATATTTTATAT
1 ATTTTAATTATATTTTATAT
3973795 TAAAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTAATTATATTTTATAT
Found at i:3976982 original size:13 final size:13
Alignment explanation
Indices: 3976964--3977025 Score: 53
Period size: 13 Copynumber: 5.0 Consensus size: 13
3976954 TTCATTTGTT
3976964 TTATTTATTATTA
1 TTATTTATTATTA
*
3976977 TTATTT-TGTTTTA
1 TTATTTAT-TATTA
*
3976990 ATA-TTATTATTA
1 TTATTTATTATTA
3977002 -TATTATATTA-TA
1 TTATT-TATTATTA
3977014 TTA-TTATTATTA
1 TTATTTATTATTA
3977026 AATAAATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
11 7 0.17
12 13 0.32
13 20 0.50
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:3977005 original size:5 final size:5
Alignment explanation
Indices: 3976990--3977023 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
3976980 TTTTGTTTTA
3976990 ATATT ATTATT ATATT ATATT ATATT ATTATT AT
1 ATATT A-TATT ATATT ATATT ATATT A-TATT AT
3977024 TAAATAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 17 0.63
6 10 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATATT
Found at i:3977009 original size:16 final size:16
Alignment explanation
Indices: 3976964--3977023 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
3976954 TTCATTTGTT
3976964 TTATT-TATTATTATTA
1 TTATTATATTA-TATTA
* *
3976980 TT-TTGTTTTAATATTA
1 TTATTATATT-ATATTA
3976996 TTATTATATTATATTA
1 TTATTATATTATATTA
3977012 -TATTATTATTAT
1 TTATTA-TATTAT
3977024 TAAATAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
15 7 0.19
16 24 0.65
17 6 0.16
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (16 bp):
TTATTATATTATATTA
Found at i:3977018 original size:24 final size:24
Alignment explanation
Indices: 3976964--3977046 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 24
3976954 TTCATTTGTT
*
3976964 TTAT-TTATTATTATTAT-TT-TG
1 TTATATTATTATTATTATATTATA
* *
3976985 TTTTAATATTATTATTATATTATA
1 TTATATTATTATTATTATATTATA
*
3977009 TTATATTATTATTATTA-AATA-A
1 TTATATTATTATTATTATATTATA
*
3977031 ATA-ATTATTATTATTA
1 TTATATTATTATTATTA
3977047 CAAACAGGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
21 16 0.31
22 15 0.29
23 5 0.10
24 16 0.31
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATATTATTATTATTATATTATA
Found at i:3977046 original size:3 final size:3
Alignment explanation
Indices: 3976968--3977025 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
3976958 TTTGTTTTAT
* *
3976968 TTA TTA TTA TTA TT- TTG TT- TTA ATA TTA TTA TTA -TA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3977012 -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
3977026 AATAAATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
2 10 0.21
3 38 0.79
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:3978696 original size:20 final size:19
Alignment explanation
Indices: 3978671--3978712 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3978661 ATATTTTATA
3978671 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
3978691 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
3978710 AAT
1 AAT
3978713 ATCGAGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:3978714 original size:119 final size:119
Alignment explanation
Indices: 3978565--3978804 Score: 297
Period size: 120 Copynumber: 2.0 Consensus size: 119
3978555 TTATTTTAAT
* * * *
3978565 ATTGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGCAGTCTTAAAACAACTGGATGT
1 ATTGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGT
* *
3978628 CCATTTTCTAATATTTTTAAATAAATAAATATCATATTTTATAAAT-TATATATTA
66 CC-TTTTCTAATATTTCTAAATAAATAAATATCATA-TTTATAAATATATAAATTA
* * * ** *
3978683 ATTGTTTTAATTATTTATTTATTTTTTAATATCGAGGAAAAGAGCTGTCTTAAGGCACCTAGAAG
1 ATTGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAG
* **
3978748 TCCTTTTCTGATATTTCTAAATAAATAAATATTTTATTTATAAATATATAAATTA
65 TCCTTTTCTAATATTTCTAAATAAATAAATATCATATTTATAAATATATAAATTA
3978803 AT
1 AT
3978805 ATATATTTTT
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
118 10 0.10
119 29 0.28
120 41 0.40
121 23 0.22
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (119 bp):
ATTGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGT
CCTTTTCTAATATTTCTAAATAAATAAATATCATATTTATAAATATATAAATTA
Found at i:3980992 original size:14 final size:14
Alignment explanation
Indices: 3980954--3981007 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
3980944 ATTTTAAATA
**
3980954 ATTTACATTTATAT
1 ATTTACATTTGCAT
*
3980968 TTTTACATTTGCAT
1 ATTTACATTTGCAT
3980982 ATTTACATTTGGCAT
1 ATTTACATTT-GCAT
* *
3980997 CTTTGCATTTG
1 ATTTACATTTG
3981008 TATTTTTATG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.24, C:0.13, G:0.09, T:0.54
Consensus pattern (14 bp):
ATTTACATTTGCAT
Found at i:3981005 original size:15 final size:15
Alignment explanation
Indices: 3980969--3981007 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
3980959 CATTTATATT
3980969 TTTACATTT-GCATA
1 TTTACATTTGGCATA
*
3980983 TTTACATTTGGCATC
1 TTTACATTTGGCATA
*
3980998 TTTGCATTTG
1 TTTACATTTG
3981008 TATTTTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (15 bp):
TTTACATTTGGCATA
Found at i:3986851 original size:114 final size:114
Alignment explanation
Indices: 3986646--3986862 Score: 362
Period size: 114 Copynumber: 1.9 Consensus size: 114
3986636 CATGTTCTCA
* *
3986646 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATTTGGTTC
1 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGGTTC
* *
3986711 GGTAGGAACCCTAAAACCAATCATTGGATTTGAAAGATAAATTTGCTCG
66 GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATAAATTTGCTCG
* *
3986760 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTC
1 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGGTTC
* *
3986825 GGTAGGAACCCCAGAACCAATTATTGGAATTGAAAGAT
66 GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGAT
3986863 GAACTGCATG
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 95 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30
Consensus pattern (114 bp):
TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGGTTC
GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATAAATTTGCTCG
Found at i:3990674 original size:113 final size:113
Alignment explanation
Indices: 3990428--3990970 Score: 718
Period size: 113 Copynumber: 4.8 Consensus size: 113
3990418 GATCAGCATT
* * * *
3990428 AACATTTCCAGTTAGAGTTCATAATGAGAAGAACTTCATCTGAAGAATGAAGAAAAAATTCATAA
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAGAAGTTCATAA
* ** * * ** *
3990493 TAAGAAGAATTTGGTCAAACCTTTTGTTTGAATTCATCA-TTCGATGGATC
65 TGAGAAGAGCTTGTTC-AACCTTTTGCTCAAATCCATCACTT-GATGGATC
* * * *
3990543 ATCATTACCTGGTAGAGTTCATAATGAGAAAAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * *
3990608 AAGAAGAGCTTGTTCAACCTTTTGCTCAAATTCATCA-TTCGATGGATT
66 GAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTT-GATGGATC
* * * *
3990656 AGCATTGCCAGGTTGAGTTCATAATGAGAAGAACTCAACTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
3990721 GAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATC
66 GAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATC
* * * *
3990769 AAAATCTCCAGAG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
3990833 TGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATC
65 TGAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATC
* *
3990882 AACATTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAACAAGTTCATAA
1 AACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
**
3990945 TGAGAAGAATTTGTTCAACCTTTTGC
65 TGAGAAGAGCTTGTTCAACCTTTTGC
3990971 ATGACTCTAT
Statistics
Matches: 388, Mismatches: 38, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
112 42 0.11
113 274 0.71
114 43 0.11
115 29 0.07
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (113 bp):
AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
GAGAAGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATC
Found at i:3991221 original size:113 final size:113
Alignment explanation
Indices: 3991019--3991382 Score: 512
Period size: 113 Copynumber: 3.3 Consensus size: 113
3991009 TTTCCAGAGA
3991019 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
1 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
*
3991084 ACCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
66 ACCAGGGCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
* *
3991132 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTTATCATTCGATGGACCAGCATT
1 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
* * *
3991197 GCCAGGGCGAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAG
66 ACCAGGGCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
* * * * *
3991245 AAATTCATAATGAGAAGAACTTG--------TT-GCTCGAATTCATCACTCGATGGATCAACTTT
1 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
* * * * *
3991301 TCCAGAGAGAGTTCATAATGAGAAGAATTCATCTGAGGAAGGAAGAAG
66 ACCAGGGCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
3991349 AAGTTCATAATGAGAAGAACTTGTTCAATCTTTT
1 AAGTTCATAATGAGAAGAACTTGTTCAA-CTTTT
3991383 GCATGATTCT
Statistics
Matches: 221, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
104 88 0.40
105 2 0.01
113 131 0.59
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (113 bp):
AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
ACCAGGGCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
Found at i:3991759 original size:19 final size:19
Alignment explanation
Indices: 3991730--3991783 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
3991720 ATTTGTTTTA
* *
3991730 TTTATTATTATTATTTTGT
1 TTTATTATTATTATTATAT
3991749 TTTCA-TATTATTATTATAT
1 TTT-ATTATTATTATTATAT
3991768 TTTATTATTATTATTA
1 TTTATTATTATTATTA
3991784 AATAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 1 0.03
19 29 0.94
20 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTATTATTATTATTATAT
Found at i:3991804 original size:3 final size:3
Alignment explanation
Indices: 3991731--3991783 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
3991721 TTTGTTTTAT
*
3991731 TTA TTA TTA TTA TT- TTG TT- TTCA -TA TTA TTA TTA -TA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA
3991772 TTA TTA TTA TTA
1 TTA TTA TTA TTA
3991784 AATAAATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
2 9 0.20
3 35 0.80
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3993433 original size:20 final size:19
Alignment explanation
Indices: 3993408--3993449 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3993398 CTATTTTATA
3993408 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
3993428 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
3993447 AAT
1 AAT
3993450 ATCGAGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:3996190 original size:113 final size:113
Alignment explanation
Indices: 3995960--3996486 Score: 749
Period size: 113 Copynumber: 4.7 Consensus size: 113
3995950 TCCAGTTAGT
* * ** *
3995960 GTTCATAATGAGAAGAACTTCATCTCAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGGTC
1 GTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTC
* ** * * * *
3996025 AAACCTTTTGTTTGAATTCATCA-TTCGATGGATCATCATTACCAG-GTAGA
65 -AACCTTTTGCTCAAATCCATCACTT-GATGGATCAGCATTTCCAGAG-AAA
*
3996075 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* * * **
3996140 ACCTTTTGCTCAAATTCATCA-TTCGATGGATCAGCATTGCTAG-GTCGA
66 ACCTTTTGCTCAAATCCATCACTT-GATGGATCAGCATTTCCAGAG-AAA
*
3996188 GTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
**
3996253 ACCTTTTGCTCAAATCCATCACTTGATGGATCAAAATTTCCAGAGAAA
66 ACCTTTTGCTCAAATCCATCACTTGATGGATCAGCATTTCCAGAGAAA
*
3996301 GTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
3996366 ACCTTTTGCTCAAATCCATCACTTGATGGATCAGCATTTCCAGAGAAA
66 ACCTTTTGCTCAAATCCATCACTTGATGGATCAGCATTTCCAGAGAAA
**
3996414 GTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
3996478 ACCTTTTGC
66 ACCTTTTGC
3996487 ATGACTCTAT
Statistics
Matches: 381, Mismatches: 29, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
112 43 0.11
113 277 0.73
114 43 0.11
115 18 0.05
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (113 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
ACCTTTTGCTCAAATCCATCACTTGATGGATCAGCATTTCCAGAGAAA
Found at i:3996737 original size:113 final size:113
Alignment explanation
Indices: 3996535--3996771 Score: 368
Period size: 113 Copynumber: 2.1 Consensus size: 113
3996525 TTTCCAGAGA
* * *
3996535 AAGTTCATAATGGGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATT
1 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCACTTGAATTCATCATTCGATGGACCAGCATT
* *
3996600 ACCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
66 ACCAGGTCGAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAG
* * *
3996648 AAGTTCATATTGAGAATAACTTGTTCAACTTTTCACTTGAATTTATCATTCGATGGACCAGCATT
1 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCACTTGAATTCATCATTCGATGGACCAGCATT
*
3996713 GCCAGGGT-GAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAG
66 ACCA-GGTCGAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAG
*
3996761 AAATTCATAAT
1 AAGTTCATAAT
3996772 CGAATTCATC
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
113 109 0.97
114 3 0.03
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (113 bp):
AAGTTCATAATGAGAAGAACTTGTTCAACTTTTCACTTGAATTCATCATTCGATGGACCAGCATT
ACCAGGTCGAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAG
Found at i:3996791 original size:87 final size:87
Alignment explanation
Indices: 3996686--3996858 Score: 215
Period size: 87 Copynumber: 2.0 Consensus size: 87
3996676 CTTTTCACTT
* * * * *
3996686 GAATTTATCATTCGATGGACCAGCATTGCCAGGGTGAGTTCATAATAAGAAGAACTCATCTGAA-
1 GAATTCATCACTCGATGGACCAACATTGCCAGAGAGAGTTCATAATAAGAAGAACTCATCT-AAG
3996750 GAAAGAAGAAGAA-ATTCATAATC
65 GAAAGAAGAAGAAGA-TCATAATC
* * * * *
3996773 GAATTCATCACTCGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAATTCATCTAAGG
1 GAATTCATCACTCGATGGACCAACATTGCCAGAGAGAGTTCATAATAAGAAGAACTCATCTAAGG
*
3996838 AAGGAAGAAGAAGATCATAAT
66 AAAGAAGAAGAAGATCATAAT
3996859 GAGAAGAACT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 2 0.03
87 70 0.96
88 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (87 bp):
GAATTCATCACTCGATGGACCAACATTGCCAGAGAGAGTTCATAATAAGAAGAACTCATCTAAGG
AAAGAAGAAGAAGATCATAATC
Found at i:3997242 original size:19 final size:20
Alignment explanation
Indices: 3997215--3997290 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 20
3997205 ATTTGTTTTA
* *
3997215 TTTATTATTATTATT-TTGT
1 TTTAATATTATTATTATTAT
3997234 TTTAATATTATTATTATTAT
1 TTTAATATTATTATTATTAT
* *
3997254 ATT-ATATTATTATTATTAA
1 TTTAATATTATTATTATTAT
* *
3997273 ATAAATAATTATTATTAT
1 TTTAAT-ATTATTATTAT
3997291 AACAAACAGG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 31 0.63
20 7 0.14
21 11 0.22
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (20 bp):
TTTAATATTATTATTATTAT
Found at i:3997242 original size:22 final size:22
Alignment explanation
Indices: 3997206--3997271 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
3997196 TTTTATTTCA
3997206 TTTGTTTTATTTATTATTATTAT
1 TTTGTTTTA-TTATTATTATTAT
*
3997229 TTTGTTTTAATATTATTATTAT
1 TTTGTTTTATTATTATTATTAT
* * *
3997251 TATATTATATTATTATTATTA
1 TTTGTTTTATTATTATTATTA
3997272 AATAAATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
22 29 0.76
23 9 0.24
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (22 bp):
TTTGTTTTATTATTATTATTAT
Found at i:3997290 original size:3 final size:3
Alignment explanation
Indices: 3997216--3997271 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
3997206 TTTGTTTTAT
* *
3997216 TTA TTA TTA TTA TT- TTG TT- TTA ATA TTA TTA TTA TTA -TA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3997260 TTA TTA TTA TTA
1 TTA TTA TTA TTA
3997272 AATAAATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 8 0.17
3 39 0.83
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:3998735 original size:29 final size:29
Alignment explanation
Indices: 3998712--3998775 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
3998702 TTATTATTAT
3998712 TATTTAGCCATAAATATATATATTTATAA
1 TATTTAGCCATAAATATATATATTTATAA
3998741 TATTTAGCCATAAATATATATATTTATAA
1 TATTTAGCCATAAATATATATATTTATAA
3998770 TATTTA
1 TATTTA
3998776 TTTTATTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (29 bp):
TATTTAGCCATAAATATATATATTTATAA
Found at i:3998953 original size:20 final size:19
Alignment explanation
Indices: 3998928--3998969 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3998918 ATATTTTATA
3998928 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
3998948 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
3998967 AAT
1 AAT
3998970 ATCGAGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:4003216 original size:55 final size:54
Alignment explanation
Indices: 4003156--4003274 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 54
4003146 TGGGTTTAAG
*
4003156 AACCGTGCAGACACTATGTGTAAAAATTCACAT-AATTCATCATGAGTTGATGAAT
1 AACCGTACAGACACTATGTGTAAAAA-TC-CATGAATTCATCATGAGTTGATGAAT
* * **
4003211 AACCGTACAGGCACTCTGTGTGTAAATCCATGGAATTCATCATGAGTTGATGAAT
1 AACCGTACAGACACTATGTGTAAAAATCCAT-GAATTCATCATGAGTTGATGAAT
4003266 AACCGTACA
1 AACCGTACA
4003275 TGCACGATAT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 3 0.05
54 2 0.04
55 52 0.91
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (54 bp):
AACCGTACAGACACTATGTGTAAAAATCCATGAATTCATCATGAGTTGATGAAT
Found at i:4008554 original size:20 final size:20
Alignment explanation
Indices: 4008526--4008577 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
4008516 AATACCCTAC
*
4008526 TCATAGGGTATCGATATTGT
1 TCATTGGGTATCGATATTGT
4008546 TCATTGGGTATCGATATTGT
1 TCATTGGGTATCGATATTGT
4008566 TCATTGGGTATC
1 TCATTGGGTATC
4008578 AATAACCATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (20 bp):
TCATTGGGTATCGATATTGT
Found at i:4016254 original size:21 final size:20
Alignment explanation
Indices: 4016216--4016254 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
4016206 TCATTGCAGG
*
4016216 AATTTATGGCATCGACAATA
1 AATTTATGGCATCCACAATA
*
4016236 AATTTCATGGCCTCCACAA
1 AATTT-ATGGCATCCACAA
4016255 AGACCTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (20 bp):
AATTTATGGCATCCACAATA
Found at i:4025433 original size:65 final size:65
Alignment explanation
Indices: 4025353--4025487 Score: 252
Period size: 65 Copynumber: 2.1 Consensus size: 65
4025343 AAAATCACAA
4025353 AATAATAATTCATCATTTAAAACAAAACTGATTTTAGGAAGCAATTAGGCAGTTCAATGTTGTTT
1 AATAATAATTCATCATTTAAAACAAAACTGATTTTAGGAAGCAATTAGGCAGTTCAATGTTGTTT
*
4025418 AATAATAATTTATCATTTAAAACAAAACTGATTTTAGGAAGCAATTAGGCAGTTCAATGTTGTTT
1 AATAATAATTCATCATTTAAAACAAAACTGATTTTAGGAAGCAATTAGGCAGTTCAATGTTGTTT
*
4025483 CATAA
1 AATAA
4025488 ACTATATAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (65 bp):
AATAATAATTCATCATTTAAAACAAAACTGATTTTAGGAAGCAATTAGGCAGTTCAATGTTGTTT
Found at i:4031777 original size:215 final size:215
Alignment explanation
Indices: 4031310--4032357 Score: 1679
Period size: 215 Copynumber: 4.9 Consensus size: 215
4031300 CTCTCTTGTG
* * * *
4031310 AAGGCTTAAAAATTACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGTCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* * * * *
4031375 ACTTATAAATTGTGAAATTTTGAAAACCACATTCTTCATTTTTAAAAATTCCATCTTCTTAAAAT
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* *
4031440 ATCATTTT-TCATTTTCAAATTC-TAGTGAAAACATCCTACCTGAAGGTTTTATGGATGGCCTGA
131 ATCATTTTCTCATTTTCAAATTCAT-GTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
4031503 AGGACTTATCATCTTGCTCTA
195 AGGACTTATCATCTTGCTCTA
* *
4031524 AAGGCTTACAGATGACCTGAAGCATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
*
4031589 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTGAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* *
4031654 GTCATTTTCTCATTTTCAAATTCATTTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
131 ATCATTTTCTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
4031719 GGACTTATCATCTTGCTCTA
196 GGACTTATCATCTTGCTCTA
* * *
4031739 AAGGCTTACAGACGACCCGAAGGATTTAAGCATCATGCTCAAAAGACTTACTGATGGCCCAAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* *
4031804 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTAAAAAATTCCATCTTCTTGAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* * * *
4031869 GTCATTTTCTCATTTTCAAATTCATTTAAAAATATCCTACCCGAAGGTTTTATGGATGGCCCGAA
131 ATCATTTTCTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
*
4031934 GGACTTATTATCTTGCTCTA
196 GGACTTATCATCTTGCTCTA
* * *
4031954 AAGGCTTACAGATGACCCGAGGGATTTAAGCATCATGCTCGAAAAACTTATTGATGGCCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
*
4032019 ACTTACT-AATTGTGAAATTTTAAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAA
66 ACTTA-TAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAA
* *
4032083 CATCATTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCTGAAGGTTTTATGGATGGCCCGA
130 CATCATTTTCTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
*
4032148 AGGGCTTATCATCTTGCTCTA
195 AGGACTTATCATCTTGCTCTA
* * * *
4032169 AAGACTTACAGATGACCCGAAGGATTTAAACATCATGCTTGAAAGACTTACTGCTGGCCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* *
4032234 ACTTATAAATCGTGAAATTTTGAAAATCGCATTCTTTGTTTTCAAAAATTCCATCTTCTTAAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* * *
4032299 ATTATTTTTTTATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGG
131 ATCATTTTCTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGG
4032358 ATTTGCTTCA
Statistics
Matches: 775, Mismatches: 55, Indels: 7
0.93 0.07 0.01
Matches are distributed among these distances:
214 126 0.16
215 647 0.83
216 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (215 bp):
AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
ATCATTTTCTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
GGACTTATCATCTTGCTCTA
Found at i:4031804 original size:42 final size:41
Alignment explanation
Indices: 4031708--4031808 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
4031698 AGGTTTTATG
* * * *
4031708 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGGCCCGAAGGACTTAGCATCATGCTCAAAAGACTTACA
* * * *
4031749 GACGACCCGAAGGATTTAAGCATCATGCTCAAAAGACTTACT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCAAAAGACTTACA
*
4031791 GATGGCCCAAAGGACTTA
1 GATGGCCCGAAGGACTTA
4031809 TAAATTGTGA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 15 0.32
42 32 0.68
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCAAAAGACTTACA
Found at i:4032454 original size:37 final size:37
Alignment explanation
Indices: 4032357--4032475 Score: 136
Period size: 37 Copynumber: 3.2 Consensus size: 37
4032347 TTTATGGATG
* ** *
4032357 GATTTGCTTCACTACTCCTCGGTGAAGGCTTAAG-GT
1 GATTTGCTTCACTCCTTTTCGGTGAAGGCTTAAGATT
* *
4032393 GGTTTACTTCACTCCTCTTT-GGTGAAGGCTTAAGATT
1 GATTTGCTTCACTCCT-TTTCGGTGAAGGCTTAAGATT
4032430 GATTTGCTTCACTCCTTTTCGGTGAAGGCTTAA-ATTT
1 GATTTGCTTCACTCCTTTTCGGTGAAGGCTTAAGA-TT
4032467 GACTTTGCT
1 GA-TTTGCT
4032476 CCAATCTCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
36 31 0.44
37 33 0.47
38 6 0.09
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.39
Consensus pattern (37 bp):
GATTTGCTTCACTCCTTTTCGGTGAAGGCTTAAGATT
Found at i:4034222 original size:2 final size:2
Alignment explanation
Indices: 4034211--4034251 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
4034201 TTGTATACAC
4034211 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4034252 TTTGTTGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:4043086 original size:15 final size:15
Alignment explanation
Indices: 4043066--4043096 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4043056 AATTGCCAAT
*
4043066 TTCCATTGAAATATC
1 TTCCATTAAAATATC
4043081 TTCCATTAAAATATC
1 TTCCATTAAAATATC
4043096 T
1 T
4043097 CATAGTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (15 bp):
TTCCATTAAAATATC
Found at i:4046670 original size:14 final size:14
Alignment explanation
Indices: 4046651--4046677 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4046641 TTAACTTAGA
4046651 ATTTAATATTATTC
1 ATTTAATATTATTC
4046665 ATTTAATATTATT
1 ATTTAATATTATT
4046678 TTTTAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTAATATTATTC
Found at i:4048225 original size:20 final size:20
Alignment explanation
Indices: 4048193--4048231 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
4048183 TAATTACCTA
4048193 TAAAAAAAGACACATTTATT
1 TAAAAAAAGACACATTTATT
4048213 TAAAATAAA-ACACATTTAT
1 TAAAA-AAAGACACATTTAT
4048232 ATATTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAAAAAAGACACATTTATT
Found at i:4051806 original size:4 final size:4
Alignment explanation
Indices: 4051799--4051828 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
4051789 TGTTAAATAA
4051799 AATT AATT AATT AATT AATT AA-T AATT AAT
1 AATT AATT AATT AATT AATT AATT AATT AAT
4051829 ATATATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:4052188 original size:21 final size:21
Alignment explanation
Indices: 4052155--4052207 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4052145 ATTCTGACTA
4052155 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * * *
4052176 TCGCGTTGTGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
4052197 TCGCAATGCGA
1 TCGCATTGCGA
4052208 ATACGTAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:4052229 original size:20 final size:20
Alignment explanation
Indices: 4052197--4052327 Score: 151
Period size: 20 Copynumber: 6.5 Consensus size: 20
4052187 TTTTCCTAAT
4052197 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * **
4052217 TCGAAACGCGAATTTA-AAAAA
1 TCGCAATGCGAA--TACGTAAA
*
4052238 T-GCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
4052257 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
4052277 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
4052297 TCGCAATGCG-ATTCTGTAAA
1 TCGCAATGCGAATAC-GTAAA
*
4052317 TCACAATGCGA
1 TCGCAATGCGA
4052328 TTTACATAGC
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
18 2 0.02
19 7 0.08
20 78 0.84
21 4 0.04
22 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:4052303 original size:60 final size:59
Alignment explanation
Indices: 4052197--4052327 Score: 167
Period size: 60 Copynumber: 2.2 Consensus size: 59
4052187 TTTTCCTAAT
4052197 TCGCAATGCGAATACGTAAATCGAAACGCGAATTTAAAAAATGCAATGCGATTAC-GTAAA
1 TCGCAATGCGAATACGTAAATCGAAACGCGAA-TTAAAAAATGCAATGCGATT-CTGTAAA
* * **
4052257 TCGCAATGCGAATACGTAAATCGCAATGCGAA-TACGTAAATCGCAATGCGATTCTGTAAA
1 TCGCAATGCGAATACGTAAATCGAAACGCGAATTA-AAAAAT-GCAATGCGATTCTGTAAA
*
4052317 TCACAATGCGA
1 TCGCAATGCGA
4052328 TTTACATAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
58 2 0.03
59 5 0.08
60 56 0.89
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (59 bp):
TCGCAATGCGAATACGTAAATCGAAACGCGAATTAAAAAATGCAATGCGATTCTGTAAA
Found at i:4052528 original size:22 final size:21
Alignment explanation
Indices: 4052503--4052564 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 21
4052493 GGCGACATCC
4052503 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCT-CGACGAAATCA
*
4052525 GTCCCCA---CGACGATATCA
1 GTCCCCATCTCGACGAAATCA
* *
4052543 GTCTCCATCTACGGCGAAATCA
1 GTCCCCATCT-CGACGAAATCA
4052565 TTCGCGGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 16 0.50
22 16 0.50
ACGTcount: A:0.27, C:0.37, G:0.16, T:0.19
Consensus pattern (21 bp):
GTCCCCATCTCGACGAAATCA
Found at i:4052957 original size:20 final size:20
Alignment explanation
Indices: 4052932--4052981 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
4052922 TGTGATTCTT
4052932 GCGTTGCGATAGTCAAATTC
1 GCGTTGCGATAGTCAAATTC
**
4052952 GCGTTGCGATAGTCATTTTC
1 GCGTTGCGATAGTCAAATTC
*
4052972 GTGTTGCGAT
1 GCGTTGCGAT
4052982 TTTCATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (20 bp):
GCGTTGCGATAGTCAAATTC
Found at i:4052987 original size:20 final size:20
Alignment explanation
Indices: 4052949--4053003 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
4052939 GATAGTCAAA
* **
4052949 TTCGCGTTGCGATAGTCATT
1 TTCGTGTTGCGATTTTCATT
4052969 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
4052989 TTCGTGTTGCGATTT
1 TTCGTGTTGCGATTT
4053004 AAAGTTTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.16, G:0.24, T:0.49
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:4054936 original size:20 final size:20
Alignment explanation
Indices: 4054911--4054977 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
4054901 CAACGAGAGA
4054911 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
4054931 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
* **
4054951 ATCGCAATACGAATTTGACT
1 ATCGCAATGCGAAAATGACT
4054971 ATCGCAA
1 ATCGCAA
4054978 CGAAAGAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (20 bp):
ATCGCAATGCGAAAATGACT
Found at i:4054989 original size:34 final size:34
Alignment explanation
Indices: 4054894--4054998 Score: 111
Period size: 40 Copynumber: 2.9 Consensus size: 34
4054884 AGAATAGTTT
* * *
4054894 ACTATTGCAACGAGAGAATCGCAATGCGAAAATG
1 ACTATCGCAACGAAAGAATCGCAATACGAAAATG
**
4054928 ACTATCGCAATGCGAAAATGACTATCGCAATACGAATTTG
1 ACTATCGCAA--CG-AAA-GA--ATCGCAATACGAAAATG
4054968 ACTATCGCAACGAAAGAATCGCAATACGAAA
1 ACTATCGCAACGAAAGAATCGCAATACGAAA
4054999 TGAAAATCGC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
34 22 0.37
36 4 0.07
37 5 0.08
38 4 0.07
40 24 0.41
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (34 bp):
ACTATCGCAACGAAAGAATCGCAATACGAAAATG
Found at i:4055048 original size:34 final size:34
Alignment explanation
Indices: 4055005--4055157 Score: 148
Period size: 34 Copynumber: 4.4 Consensus size: 34
4054995 GAAATGAAAA
*
4055005 TCGCATTGCGATTCTTTCGTTGCGATAGTCAAAT
1 TCGCATTGCGATTCTTTCGTTGCGATAGTCAATT
*
4055039 TCGCATTGCGATACTCATTTTCGCATTGCGATAGTCATTT
1 TCGCATTGCGAT--TC--TTTCG--TTGCGATAGTCAATT
* * **
4055079 TCGCGTTGCGATT-TTGTTGTTGCGATTTTC-ATT
1 TCGCATTGCGATTCTT-TCGTTGCGATAGTCAATT
* *
4055112 TCGCATTGCGATTCTCTCGTTGCGATAGTCATTT
1 TCGCATTGCGATTCTTTCGTTGCGATAGTCAATT
*
4055146 TCGCGTTGCGAT
1 TCGCATTGCGAT
4055158 AGTCATTTTC
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
33 25 0.26
34 35 0.36
35 2 0.02
36 4 0.04
38 6 0.06
40 24 0.25
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.42
Consensus pattern (34 bp):
TCGCATTGCGATTCTTTCGTTGCGATAGTCAATT
Found at i:4055049 original size:20 final size:20
Alignment explanation
Indices: 4055024--4055177 Score: 120
Period size: 20 Copynumber: 8.3 Consensus size: 20
4055014 GATTCTTTCG
**
4055024 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
*
4055044 TTGCGATACTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
4055064 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
4055084 TTGCGAT--T--TTGTT-G--
1 TTGCGATAGTCATT-TTCGCA
**
4055098 TTGCGATTTTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
4055117 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
*
4055131 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
4055151 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
4055171 TTGCGAT
1 TTGCGAT
4055178 TTTAAGTTTC
Statistics
Matches: 113, Mismatches: 7, Indels: 28
0.76 0.05 0.19
Matches are distributed among these distances:
14 14 0.12
16 12 0.11
17 6 0.05
18 5 0.04
19 7 0.06
20 69 0.61
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:4055187 original size:20 final size:20
Alignment explanation
Indices: 4055129--4055187 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
4055119 GCGATTCTCT
* *
4055129 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
* *
4055149 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTAAGTTTCG
**
4055169 CGTTGCGATTTTAAGTTTC
1 CGTTGCGATAGTAAGTTTC
4055188 AGATTATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTAAGTTTCG
Found at i:4055758 original size:42 final size:42
Alignment explanation
Indices: 4055687--4055768 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
4055677 CTCCCCTATC
*
4055687 GTTCAAGAGGCCTCTATCATCCCTCAAGA-GTCCCCTCCCACT
1 GTTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCACT
* ** *
4055729 GTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCA
1 GTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCA
4055769 ACATTCTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.23
Consensus pattern (42 bp):
GTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCACT
Found at i:4057143 original size:14 final size:14
Alignment explanation
Indices: 4057124--4057159 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4057114 ATTGTTTAAT
4057124 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
4057138 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
4057152 TGATTTGT
1 TGATTTGT
4057160 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:4057347 original size:16 final size:16
Alignment explanation
Indices: 4057296--4057352 Score: 71
Period size: 16 Copynumber: 3.4 Consensus size: 16
4057286 ATCATCTTTC
4057296 TTGATACGAATAATTT
1 TTGATACGAATAATTT
*
4057312 TTGTATACAAAGCT-ATTT
1 TTG-ATACGAA--TAATTT
4057330 TTGATACGAATAATTT
1 TTGATACGAATAATTT
4057346 TTGATAC
1 TTGATAC
4057353 AAAGGAAGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
15 1 0.03
16 14 0.40
17 12 0.34
18 7 0.20
19 1 0.03
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (16 bp):
TTGATACGAATAATTT
Found at i:4057845 original size:24 final size:24
Alignment explanation
Indices: 4057811--4057864 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
4057801 TCTGAAAATC
4057811 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
4057835 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
4057859 ATCAAA
1 ATCAAA
4057865 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:4057878 original size:24 final size:24
Alignment explanation
Indices: 4057811--4057878 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
4057801 TCTGAAAATC
* * *
4057811 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
4057835 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
4057859 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
4057879 TAGTACTCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:4058739 original size:20 final size:20
Alignment explanation
Indices: 4058716--4058774 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
4058706 TTGCGATAGT
* *
4058716 CAGAATCTCGTTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
4058736 CAGATTCGCATTGCGATTTA
1 CAGAATCGCATTGCGATTTA
4058756 C-GTAATCGCATTGCGATTT
1 CAG-AATCGCATTGCGATTT
4058775 TCCAAATTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (20 bp):
CAGAATCGCATTGCGATTTA
Found at i:4058795 original size:41 final size:40
Alignment explanation
Indices: 4058726--4058812 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 40
4058716 CAGAATCTCG
*
4058726 TTGCGATTTACAGATTCGCATTGCGATTTACGTAATCGCA
1 TTGCGATTTACAAATTCGCATTGCGATTTACGTAATCGCA
* * * *
4058766 TTGCGATTTTCCAAATTCGCGTTGTGATTTACGTATTCGCA
1 TTGCGA-TTTACAAATTCGCATTGCGATTTACGTAATCGCA
4058807 TTGCGA
1 TTGCGA
4058813 ATTAGGAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 6 0.15
41 35 0.85
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (40 bp):
TTGCGATTTACAAATTCGCATTGCGATTTACGTAATCGCA
Found at i:4058805 original size:20 final size:20
Alignment explanation
Indices: 4058726--4058812 Score: 95
Period size: 20 Copynumber: 4.3 Consensus size: 20
4058716 CAGAATCTCG
4058726 TTGCGATTTACAG-ATTCGCA
1 TTGCGATTTAC-GTATTCGCA
*
4058746 TTGCGATTTACGTAATCGCA
1 TTGCGATTTACGTATTCGCA
* ** *
4058766 TTGCGATTTTCCAAATTCGCG
1 TTGCGA-TTTACGTATTCGCA
*
4058787 TTGTGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
4058807 TTGCGA
1 TTGCGA
4058813 ATTAGGAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
19 1 0.02
20 38 0.72
21 14 0.26
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
TTGCGATTTACGTATTCGCA
Found at i:4058832 original size:21 final size:21
Alignment explanation
Indices: 4058802--4058871 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
4058792 ATTTACGTAT
* * *
4058802 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTTGGGAAA
4058823 TCGCAATGCGAATTTGGGAAA
1 TCGCAATGCGAATTTGGGAAA
*
4058844 TCGCAACGCGAATTTGGGAAA
1 TCGCAATGCGAATTTGGGAAA
4058865 TCGCAAT
1 TCGCAAT
4058872 ACGATAGTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGGAAA
Found at i:4070679 original size:30 final size:30
Alignment explanation
Indices: 4070639--4070697 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
4070629 CTAAAGTGAG
4070639 GTTATCCTCTCACTAACT-GATATCTCACTT
1 GTTATCCTCTCACT-ACTCGATATCTCACTT
* *
4070669 GTTATTCTCTCACTAGTCGATATCTCACT
1 GTTATCCTCTCACTACTCGATATCTCACT
4070698 CGTTCTCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.22, C:0.29, G:0.08, T:0.41
Consensus pattern (30 bp):
GTTATCCTCTCACTACTCGATATCTCACTT
Found at i:4071703 original size:30 final size:30
Alignment explanation
Indices: 4071641--4071703 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
4071631 CTAATTTGAG
* **
4071641 GTTATCCTCTCACTAACTGATATCTCGTTC
1 GTTATCCTCTCACTAACCGATATCTCACTC
* *
4071671 GTTATTCTCTCACTAGCCGATATCTCACTC
1 GTTATCCTCTCACTAACCGATATCTCACTC
4071701 GTT
1 GTT
4071704 CTCTCATCTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.30, G:0.11, T:0.40
Consensus pattern (30 bp):
GTTATCCTCTCACTAACCGATATCTCACTC
Found at i:4072258 original size:999 final size:1000
Alignment explanation
Indices: 4070325--4072723 Score: 3644
Period size: 999 Copynumber: 2.4 Consensus size: 1000
4070315 AACCCGATGT
* * * *
4070325 CATAGCCATTAGGTAGATCACGGAGGGAAACCTGATGTCACATAACATTAGTACAATTCCCGCCT
1 CATAGCCATCAGGTAGATCACGGAGGGGAACCCGATGTCACATAACATCAGTACAATTCCCGCCT
* * *
4070390 AACTGAAGCATTGGCTCGGTCTCAGATAGT-CTTCAAGCAAAACATTAACATATCTTAAGTACTG
66 AACTGAAGCATTGGCTCGGTCTCACATA-TCCTTCAAGAAAAACTTTAACATATCTTAAGTACTG
* * * *
4070454 ACTAGTGCAACTATAAAAACATGACTGAAACAATGTGAGGTAAGTCTAGTGGTGC-GGT-CA-G-
130 ACTGGTGCAACTATAAAAACATGACTGAAACAACGTGAGGTAAGTCTAGTGGTGCAGTTAGAGGA
* * *
4070515 --TTCACGTGCATCTCAGGACAACACACTAGCCTGCCTTGAATACTTGAGAGTCTCGGGATAAGA
195 ATTTCACGTGCAACTCAGGACAACACACTAGCCTGCCTTGAATACTCGAGAGTCTCGGGATAAAA
* * *
4070578 ACCAAAATTTTATGTGCACAAGAACTTACATCCCTAGCCTAGCTGGACTCACTAAAGTGAGGTTA
260 ACCAAAATTTTACGTGCATAAGAACTTACATCCCTAGCCTAGATGGACTCACTAAAGTGAGGTTA
* * *
4070643 TCCTCTCACTAACTGATATCTCACTT-GTTATTCTCTCACTAGTCGATATCTCACTCGTTCTCTA
325 TCCTCTCACTAACTGATATCTC-GTTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTC
*
4070707 ATCTAGAACTTTATGCCCACTAAAACTGAATACATGAGTAATGTTCAATGAATACATATGCCCAC
389 ATCTAGAACTTTATGCCCACTAAAACTGAATACATGAGTAATATTCAATGAATACATATGCCCAC
* * *
4070772 TAAAAATACAATACAATACTCTGAAGGAGATGCTAGAAGTCATGTTGTGACGGTGCTCTAGGAAC
454 TAAAAATACAATACAATACTCTGAACGAGATGCTAGAAG--ATGCTATGACGGTGCTCTAGGAAC
* * * * *
4070837 TGCTCAAGCTACTGACTTGTTAACGAGAAACATCCGAAGACTGAGCTTACAAAGACCAAGAGTAT
517 TACTCAAGCTACTGACATGTCAACGAAAAACATCCCAAGACTGAGCTTACAAAGACCAAGAGTAT
**
4070902 AATCGCTAATCTAGAGCATCATAAGAATCTCATAAACATAATTATGATGAAGACATGGTACTAAA
582 AATCGCTAATCTAGAGCATCATAAGAATCTCATAAACATAAACATGATGAAGACATGGTACTAAA
*
4070967 CAATAGGTACATGCATGATCTAGATCAAGTGCTACCTACTTAAGGCTTTACTATTCTATCACTGA
647 CAATAGGTACATGCATGATCTAGATCAAGTGCTACCTACTTAAGGCTTTACTATTCTATCACCGA
* *
4071032 GGTAGGAGTCTAACGCTTCCCTTAGTCCTCTGCTAAGGGCCTTTCCATGAGTACACCACTAAAGG
712 GGTAGGAGTCTAACGCTTCCCTTAGTCCTCTGCTAAGGGCATTTCCATGAGTAAACCACTAAAGG
*
4071097 GCCCCCGCCATAATGACTGAAACTACTACGCATTATCTAAATGAGACACTAATACTCTTGTGCAT
777 GCCCCCACCATAATGACTGAAACTACTACGCATTATCTAAATGAGACACTAATACTCTTGTGCAT
* * * * *
4071162 TACATAAATGCAAAACTCACCATACTGTGCATTATCTGAATGCAACCTGTCTAGCATATGGTCTC
842 TACATAAATACAAAACTCAACATAATATGCATTATATGAATGCAACCTGTCTAGCATATGGTCTC
* * * **
4071227 ACATAACTATTAGGAACTAGTTACTAAGGGAACCCAATGTCATATAGCATCGATGTAGTTTTTAC
907 ACATAACTATCAGAAACTAGTTACTAAGGGAACCCAATGTCATATAGCATCGATGCAGTTCCTAC
*
4071292 TAACATACGAAATGATCTCTTGGTCTTCA
972 TAACATAAGAAATGATCTCTTGGTCTTCA
* * *
4071321 CATAGCCATCAAGTAGATCACGGAGGGGAACCCAATGTCACATAACATCAGTACAATTCTCGCCT
1 CATAGCCATCAGGTAGATCACGGAGGGGAACCCGATGTCACATAACATCAGTACAATTCCCGCCT
*
4071386 AACTGAATCATTGGCTCGGTCTCACATATCCTTCAAGAAAAACTTTAACATATCTTAAGTACTGA
66 AACTGAAGCATTGGCTCGGTCTCACATATCCTTCAAGAAAAACTTTAACATATCTTAAGTACTGA
* * *
4071451 CTGGTGCAACTATAAAAGCATGACTGGAACAACGTGAGGTAAGTCTAGTTGTGCAGTTAGAGGAA
131 CTGGTGCAACTATAAAAACATGACTGAAACAACGTGAGGTAAGTCTAGTGGTGCAGTTAGAGGAA
*
4071516 TTTCACGTGCAACTTAGGACAACACACTAGCCTGCCTTGAATACTCGAGAGTCTCGGGATAAAAA
196 TTTCACGTGCAACTCAGGACAACACACTAGCCTGCCTTGAATACTCGAGAGTCTCGGGATAAAAA
**
4071581 CCAAAATTTTACGTGCATAAGAACTTACATCCCTAGCCTAGATGGACTCACTAATTTGAGGTTAT
261 CCAAAATTTTACGTGCATAAGAACTTACATCCCTAGCCTAGATGGACTCACTAAAGTGAGGTTAT
4071646 CCTCTCACTAACTGATATCTCGTTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTCAT
326 CCTCTCACTAACTGATATCTCGTTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTCAT
* * *
4071711 CTAGAACTTTATGTCCACTAAAACTGAATACATGAGTAATATTCTATGAATACATATGCCCATTA
391 CTAGAACTTTATGCCCACTAAAACTGAATACATGAGTAATATTCAATGAATACATATGCCCACTA
* *
4071776 AAACTACAATACAATACTTTGAACGAGATGCTAGAAG-TGCTATGACGGTGCTCTAGGAACTACT
456 AAAATACAATACAATACTCTGAACGAGATGCTAGAAGATGCTATGACGGTGCTCTAGGAACTACT
* * *
4071840 CAAGCTACTGGCATGTCAACGAAAAACATCCCAAGGCTGAGCTTACAAAG-CCTAGCAGTATAAT
521 CAAGCTACTGACATGTCAACGAAAAACATCCCAAGACTGAGCTTACAAAGACCAAG-AGTATAAT
*
4071904 CGCTAATCTAGAGCGTCATAAGAATCTCATAAACATAAACATGATGAAGACATGGTACTAAACAA
585 CGCTAATCTAGAGCATCATAAGAATCTCATAAACATAAACATGATGAAGACATGGTACTAAACAA
* *
4071969 TAGGTACATGCATGATCTAGATCAAGTGCTACCTACTTAAGGCTTTATTGTTCTATCACCGAGGT
650 TAGGTACATGCATGATCTAGATCAAGTGCTACCTACTTAAGGCTTTACTATTCTATCACCGAGGT
* * * *
4072034 AGGAGTCTAACTCTTCCCTTAGTCCTTTGCTAAGGGCATTGT-CATTAGTAAACCACTAAAGGGT
715 AGGAGTCTAACGCTTCCCTTAGTCCTCTGCTAAGGGCATT-TCCATGAGTAAACCACTAAAGGGC
* *
4072098 CTCCACCATAATGACTGAAACTGCTACGCATTATCTAAAT-ACGACACTAATACT-TCTGTGCAT
779 CCCCACCATAATGACTGAAACTACTACGCATTATCTAAATGA-GACACTAATACTCT-TGTGCAT
* * *
4072161 TATC-TGAATACAAAACTGAACATAATATGCATTATATGAATGC-ACCTTGTCTAGCATCTGGTC
842 TA-CATAAATACAAAACTCAACATAATATGCATTATATGAATGCAACC-TGTCTAGCATATGGTC
* * * * *
4072224 TTACATAGCTATCA-AACACTAGTTACTGAGGGAACCCGATGTCATATAGCATCGGTGCAGTTCC
905 TCACATAACTATCAGAA-ACTAGTTACTAAGGGAACCCAATGTCATATAGCATCGATGCAGTTCC
*
4072288 TACTAACTTAAGAAATGATCTCTTGGTCTTCA
969 TACTAACATAAGAAATGATCTCTTGGTCTTCA
*
4072320 CATAGCCATCAGGAAGATCACGGAGGGGAACCCGATGTCACATAACATCAGTACAATTCCCGCCT
1 CATAGCCATCAGGTAGATCACGGAGGGGAACCCGATGTCACATAACATCAGTACAATTCCCGCCT
* * * * *
4072385 AACTGAAGCATTGGCTCGGCCTCACATAGCCTTTAAGAAAAGCTTTAATATATCTTAAGTACTGA
66 AACTGAAGCATTGGCTCGGTCTCACATATCCTTCAAGAAAAACTTTAACATATCTTAAGTACTGA
* * *
4072450 CTGATGCAACTATAAAAACATGACTGAAACAACGTGAGGTAAGTTTAGTGGTGTAGTTAGAGGAA
131 CTGGTGCAACTATAAAAACATGACTGAAACAACGTGAGGTAAGTCTAGTGGTGCAGTTAGAGGAA
* * * * * * *
4072515 TTTCATGTGCATA-TCAGGATAACAAACTAGCCTACCTTGATTACTCGAGAGTCTCGGGACAATA
196 TTTCACGTGCA-ACTCAGGACAACACACTAGCCTGCCTTGAATACTCGAGAGTCTCGGGATAAAA
* *
4072579 ACCAAAATTTTACGTGCATATGAACTTAGATCCCTAGCCTAGATGGACTCACTAAAGTGAGGTTA
260 ACCAAAATTTTACGTGCATAAGAACTTACATCCCTAGCCTAGATGGACTCACTAAAGTGAGGTTA
* *
4072644 TCTTCTCACTAACTGATATCTCGCTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTCA
325 TCCTCTCACTAACTGATATCTCGTTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTCA
*
4072709 TTTAGAACTTTATGC
390 TCTAGAACTTTATGC
4072724 GAAGGCGTAT
Statistics
Matches: 1273, Mismatches: 114, Indels: 29
0.90 0.08 0.02
Matches are distributed among these distances:
995 1 0.00
996 166 0.13
997 2 0.00
998 11 0.01
999 814 0.64
1000 3 0.00
1001 2 0.00
1002 274 0.22
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (1000 bp):
CATAGCCATCAGGTAGATCACGGAGGGGAACCCGATGTCACATAACATCAGTACAATTCCCGCCT
AACTGAAGCATTGGCTCGGTCTCACATATCCTTCAAGAAAAACTTTAACATATCTTAAGTACTGA
CTGGTGCAACTATAAAAACATGACTGAAACAACGTGAGGTAAGTCTAGTGGTGCAGTTAGAGGAA
TTTCACGTGCAACTCAGGACAACACACTAGCCTGCCTTGAATACTCGAGAGTCTCGGGATAAAAA
CCAAAATTTTACGTGCATAAGAACTTACATCCCTAGCCTAGATGGACTCACTAAAGTGAGGTTAT
CCTCTCACTAACTGATATCTCGTTCGTTATTCTCTCACTAGCCGATATCTCACTCGTTCTCTCAT
CTAGAACTTTATGCCCACTAAAACTGAATACATGAGTAATATTCAATGAATACATATGCCCACTA
AAAATACAATACAATACTCTGAACGAGATGCTAGAAGATGCTATGACGGTGCTCTAGGAACTACT
CAAGCTACTGACATGTCAACGAAAAACATCCCAAGACTGAGCTTACAAAGACCAAGAGTATAATC
GCTAATCTAGAGCATCATAAGAATCTCATAAACATAAACATGATGAAGACATGGTACTAAACAAT
AGGTACATGCATGATCTAGATCAAGTGCTACCTACTTAAGGCTTTACTATTCTATCACCGAGGTA
GGAGTCTAACGCTTCCCTTAGTCCTCTGCTAAGGGCATTTCCATGAGTAAACCACTAAAGGGCCC
CCACCATAATGACTGAAACTACTACGCATTATCTAAATGAGACACTAATACTCTTGTGCATTACA
TAAATACAAAACTCAACATAATATGCATTATATGAATGCAACCTGTCTAGCATATGGTCTCACAT
AACTATCAGAAACTAGTTACTAAGGGAACCCAATGTCATATAGCATCGATGCAGTTCCTACTAAC
ATAAGAAATGATCTCTTGGTCTTCA
Found at i:4075366 original size:198 final size:198
Alignment explanation
Indices: 4075027--4075426 Score: 508
Period size: 197 Copynumber: 2.0 Consensus size: 198
4075017 TTTTTTTATA
* * *
4075027 AATTTATTATTGTGAAAGAATATATTTGTCCTAATTTTTTATATTGAGAAATTTATTATTTGTTA
1 AATTTATTATTGTGAAAGAATATATTTGTCCTAAATTTTTATATTGAGAAAATTAATATTTGTTA
* *
4075092 TAAATTGTTATCATGACTAAATAAATTTGTTAAAAGTTTTCATTTTGAGAAAATATTACGACGAA
66 TAAATTGTTATCATAACTAAATAAATTTGTCAAAAGTTTTCATTTTGAGAAAATATTACGACGAA
** * * *
4075157 ATAAATTTGACATAATTTTTTTATTTTGATTAAATTTAATATGCTATTGTGACTAAATAAATTTG
131 ATAAATTTGACATAA-TTTCCTATTTTGACTAAATTTAATATACTATTATGACTAAATAAATTTG
4075222 TTAC
195 TTAC
4075226 AATTTATTATTGTGAAA-AATATATTAT-TCTTCGTAAATTTTTATATTGA-AAAATTAATATTT
1 AATTTATTATTGTGAAAGAATATATT-TGTC--C-TAAATTTTTATATTGAGAAAATTAATATTT
* * ** * **
4075288 GTTATTAATTGTTA-CTTTAACTAAAT-AATTT-TCATCA-TTTATTATTTTGAGAAAATATTGT
62 GTTATAAATTGTTATC-ATAACTAAATAAATTTGTCAAAAGTTT-TCATTTTGAGAAAATATTAC
* * *
4075349 GACTAAATAAATTTGACATAATTTCCTATTTTGACTAAATTTAATATATTATTATGATTAAATAA
125 GACGAAATAAATTTGACATAATTTCCTATTTTGACTAAATTTAATATACTATTATGACTAAATAA
4075414 ATTTGTTAC
190 ATTTGTTAC
4075423 AATT
1 AATT
4075427 AGTTATACAT
Statistics
Matches: 175, Mismatches: 20, Indels: 14
0.84 0.10 0.07
Matches are distributed among these distances:
197 53 0.30
198 50 0.29
199 24 0.14
200 33 0.19
201 15 0.09
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (198 bp):
AATTTATTATTGTGAAAGAATATATTTGTCCTAAATTTTTATATTGAGAAAATTAATATTTGTTA
TAAATTGTTATCATAACTAAATAAATTTGTCAAAAGTTTTCATTTTGAGAAAATATTACGACGAA
ATAAATTTGACATAATTTCCTATTTTGACTAAATTTAATATACTATTATGACTAAATAAATTTGT
TAC
Found at i:4075634 original size:33 final size:33
Alignment explanation
Indices: 4075559--4075635 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
4075549 GACTAAATAA
* * *
4075559 ATTTGTTA-CAATTTTTTATTATGAAAATTATT
1 ATTTGTTATAAATTTTTTATTAAGAAAATTAAT
*
4075591 ATTT-TCATAAATTTTTATATTAAG-AAATTAAT
1 ATTTGTTATAAATTTTT-TATTAAGAAAATTAAT
4075623 ATTTGTTATAAAT
1 ATTTGTTATAAAT
4075636 ATAATAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
31 2 0.05
32 22 0.59
33 13 0.35
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (33 bp):
ATTTGTTATAAATTTTTTATTAAGAAAATTAAT
Found at i:4078279 original size:62 final size:62
Alignment explanation
Indices: 4078177--4078299 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
4078167 ATAAGGGTAT
* *
4078177 TATTGATACCCTTTCAAGGAGTATTGATACTATATGTCTAGTATCGATACTCAACTGGTCAA
1 TATTAATACCCTTTCAAGGAGTATTGATACTATAGGTCTAGTATCGATACTCAACTGGTCAA
*
4078239 TATTAATACCCTTTTAAGGAGTATTGATACTATAGGTCTAGTATCGATACTCAACTGGTCA
1 TATTAATACCCTTTCAAGGAGTATTGATACTATAGGTCTAGTATCGATACTCAACTGGTCA
4078300 GTATCGATAC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (62 bp):
TATTAATACCCTTTCAAGGAGTATTGATACTATAGGTCTAGTATCGATACTCAACTGGTCAA
Found at i:4080273 original size:35 final size:35
Alignment explanation
Indices: 4080230--4080305 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
4080220 TCTTACCTTG
4080230 ATTGTTCATTGATTCATCATTTGCATTGGATTTTT
1 ATTGTTCATTGATTCATCATTTGCATTGGATTTTT
4080265 ATTGTTCATTGATTCATCATTTGCATTGGATTTTT
1 ATTGTTCATTGATTCATCATTTGCATTGGATTTTT
4080300 ATTGTT
1 ATTGTT
4080306 TTTGACGACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.55
Consensus pattern (35 bp):
ATTGTTCATTGATTCATCATTTGCATTGGATTTTT
Found at i:4080651 original size:3 final size:3
Alignment explanation
Indices: 4080643--4080674 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4080633 GATTATAATT
4080643 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
4080675 TATTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:4080679 original size:3 final size:3
Alignment explanation
Indices: 4080673--4080709 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4080663 GATGATGATG
4080673 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4080710 AACTAAGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4085772 original size:46 final size:46
Alignment explanation
Indices: 4085705--4085808 Score: 165
Period size: 46 Copynumber: 2.3 Consensus size: 46
4085695 AGGCACTTCC
*
4085705 GTTAAGGAACTTTACTGTATCAGTGTTGAGGTACTTTAGTA-TCAGT
1 GTTAAGGAACTTTACTGTATCAGTGTTGAGGCACTTTAGTACT-AGT
4085751 GTTAAGGAACTTTACTGTATCAGTGTTGAGGCACTTTAGTACTAGT
1 GTTAAGGAACTTTACTGTATCAGTGTTGAGGCACTTTAGTACTAGT
* *
4085797 GCTAAGGCACTT
1 GTTAAGGAACTT
4085809 CCGTTAATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 53 0.98
47 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (46 bp):
GTTAAGGAACTTTACTGTATCAGTGTTGAGGCACTTTAGTACTAGT
Found at i:4085775 original size:24 final size:24
Alignment explanation
Indices: 4085705--4085788 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 24
4085695 AGGCACTTCC
4085705 GTTAAGGAACTTTACTGTATCAGT
1 GTTAAGGAACTTTACTGTATCAGT
* *
4085729 GTTGAGGTACTTTA--GTATCAGT
1 GTTAAGGAACTTTACTGTATCAGT
4085751 GTTAAGGAACTTTACTGTATCAGT
1 GTTAAGGAACTTTACTGTATCAGT
* *
4085775 GTTGAGGCACTTTA
1 GTTAAGGAACTTTA
4085789 GTACTAGTGC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
22 20 0.38
24 32 0.62
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (24 bp):
GTTAAGGAACTTTACTGTATCAGT
Found at i:4092800 original size:68 final size:68
Alignment explanation
Indices: 4092704--4093214 Score: 743
Period size: 68 Copynumber: 7.5 Consensus size: 68
4092694 TTTAACCGTA
* *
4092704 CATCTAACTGGGATAAATGACACCTTTCTGTCAAATGCATAGTTAGGCCTCAAAGGCACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
4092769 TTT
66 TTT
* * *
4092772 CATCTAACTGACATAAATTACACTTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
*
4092837 TTA
66 TTT
* * * *
4092840 CATCTAACTGGCATAAATGACACATTTCTGTCAAATGAACAATTAGGACTCAAAGGCACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
*
4092905 CTT
66 TTT
* * *
4092908 CATATAACTAGCATAAATGACACCTTTATGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
4092973 TTT
66 TTT
* * * *
4092976 TATCTAACTGGCATAAATGATACCTTTCTGTCTAATGCATAGTTAGGCCTCAAAGGCACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
4093041 TTT
66 TTT
* * * * * * * *
4093044 CATCTAACTGGTAAAAATGACTCTTTTTTTCTCAAATGCACATTTAGGCCTCAAAGGCATTTAGC
1 CATCTAACTGGCATAAATGACAC-CTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGC
4093109 CTTT
65 CTTT
* * *
4093113 CATCTAACTGGAATAAATGACACCTTTCTGTCAAATGCACAGTTAGGACTCAAAGGGACTTAGCC
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
4093178 TTT
66 TTT
*
4093181 CATCTAACTGGCATAAATGACAACTTTCTGTCAA
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAA
4093215 CTCAAAGACA
Statistics
Matches: 389, Mismatches: 53, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
68 331 0.85
69 58 0.15
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (68 bp):
CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC
TTT
Found at i:4093228 original size:54 final size:54
Alignment explanation
Indices: 4093160--4093268 Score: 175
Period size: 54 Copynumber: 2.0 Consensus size: 54
4093150 CACAGTTAGG
** *
4093160 ACTCAAAGGGACTTAGCCTTTCATCTAACTGGCATAAATGACA-ACTTTCTGTCA
1 ACTCAAAGACACTTAGCCTTTCATCTAACTGACATAAATGACACA-TTTCTGTCA
4093214 ACTCAAAGACACTTAGCCTTTCATCTAACTGACATAAATGACACATTTCTGTCA
1 ACTCAAAGACACTTAGCCTTTCATCTAACTGACATAAATGACACATTTCTGTCA
4093268 A
1 A
4093269 ATGCACAGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (54 bp):
ACTCAAAGACACTTAGCCTTTCATCTAACTGACATAAATGACACATTTCTGTCA
Found at i:4093587 original size:55 final size:55
Alignment explanation
Indices: 4093462--4093612 Score: 223
Period size: 55 Copynumber: 2.7 Consensus size: 55
4093452 ATATATTTCT
* * * *
4093462 CATACAAAAATTCATACACTTGGTATGAATTTCTTA-TTTCGCACACATAGTGCC
1 CATACAAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCAAACAAAGTGCC
* *
4093516 CATACATAAATTCATACAGTTAGTATGAATTTCTTAGTTTTGCAAACAAAGTGCC
1 CATACAAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCAAACAAAGTGCC
*
4093571 CATACAGAAATTCATACACTTAGTATGAATTTCTTAAGTTTT
1 CATACAAAAATTCATACACTTAGTATGAATTTCTT-AGTTTT
4093613 TGCACACTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 33 0.38
55 48 0.55
56 6 0.07
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (55 bp):
CATACAAAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCAAACAAAGTGCC
Found at i:4094805 original size:27 final size:28
Alignment explanation
Indices: 4094774--4094827 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
4094764 AACTTTTATC
4094774 AAATT-GTTAAATAAA-TCCTTAGATTTT
1 AAATTCGTTAAATAAAGTCCTT-GATTTT
* *
4094801 AAATTCTTTCAATAAAGTCCTTGATTT
1 AAATTCGTTAAATAAAGTCCTTGATTT
4094828 CATATTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 5 0.22
28 13 0.57
29 5 0.22
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (28 bp):
AAATTCGTTAAATAAAGTCCTTGATTTT
Found at i:4095608 original size:2 final size:2
Alignment explanation
Indices: 4095601--4095635 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4095591 CCAGAAAAGC
4095601 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4095636 TCCTGACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4095860 original size:21 final size:21
Alignment explanation
Indices: 4095834--4095878 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
4095824 GCATAGATCA
4095834 AGGGTCAACTAATACCAATAC
1 AGGGTCAACTAATACCAATAC
4095855 AGGGTCAACTAATACCAATAC
1 AGGGTCAACTAATACCAATAC
4095876 AGG
1 AGG
4095879 CTCATCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (21 bp):
AGGGTCAACTAATACCAATAC
Found at i:4098073 original size:2 final size:2
Alignment explanation
Indices: 4098066--4098102 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
4098056 TGTTGTACAT
4098066 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4098103 CATCCCTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4098273 original size:29 final size:29
Alignment explanation
Indices: 4098241--4098387 Score: 190
Period size: 29 Copynumber: 5.1 Consensus size: 29
4098231 AGTCCCTTAT
*
4098241 TCTTTTACTCAACAGTGTTTAATCATTCA
1 TCTTTTACTCAACAGTGTTTAATCGTTCA
* *
4098270 TCTTTTTCTCAACAGTGTTTAATTGTT-A
1 TCTTTTACTCAACAGTGTTTAATCGTTCA
*
4098298 TCTTTTACTCAACAGTGTTTAA-CTATTCA
1 TCTTTTACTCAACAGTGTTTAATC-GTTCA
* * *
4098327 TCTTTTACTCAACAGCGTTTAATTGTTTA
1 TCTTTTACTCAACAGTGTTTAATCGTTCA
* *
4098356 TCTTTTACTCAACATTGTTTAACCGTTCA
1 TCTTTTACTCAACAGTGTTTAATCGTTCA
4098385 TCT
1 TCT
4098388 AACTGGCATA
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
28 24 0.24
29 76 0.76
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (29 bp):
TCTTTTACTCAACAGTGTTTAATCGTTCA
Found at i:4098310 original size:57 final size:57
Alignment explanation
Indices: 4098241--4098387 Score: 224
Period size: 57 Copynumber: 2.5 Consensus size: 57
4098231 AGTCCCTTAT
* *
4098241 TCTTTTACTCAACAGTGTTTAATCATTCATCTTTTTCTCAACAGTGTTTAATTG-TTA
1 TCTTTTACTCAACAGTGTTTAA-CATTCATCTTTTACTCAACAGCGTTTAATTGTTTA
4098298 TCTTTTACTCAACAGTGTTTAACTATTCATCTTTTACTCAACAGCGTTTAATTGTTTA
1 TCTTTTACTCAACAGTGTTTAAC-ATTCATCTTTTACTCAACAGCGTTTAATTGTTTA
* *
4098356 TCTTTTACTCAACATTGTTTAACCGTTCATCT
1 TCTTTTACTCAACAGTGTTTAA-CATTCATCT
4098388 AACTGGCATA
Statistics
Matches: 83, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
56 1 0.01
57 50 0.60
58 31 0.37
59 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (57 bp):
TCTTTTACTCAACAGTGTTTAACATTCATCTTTTACTCAACAGCGTTTAATTGTTTA
Found at i:4098458 original size:81 final size:80
Alignment explanation
Indices: 4098356--4098624 Score: 382
Period size: 81 Copynumber: 3.4 Consensus size: 80
4098346 TAATTGTTTA
* *
4098356 TCTTTTACTCAACATTGTTTAACCGTTCATCTAACTGGCATAAATGAAACCTTTCTACCAAATGC
1 TCTTTTACTCAACAGTATTTAACCGTTCATCTAACT-GCATAAATGAAACCTTTCTACCAAATGC
*
4098421 ACAGCTAGACCATTAT
65 ACAGCTAGGCCATTAT
* * *
4098437 TCTTTTACTCAATAGTATTTAACCATTCATCTAACTAGCATAATTGACAA-CTTTCTACCAAATG
1 TCTTTTACTCAACAGTATTTAACCGTTCATCTAACT-GCATAAATGA-AACCTTTCTACCAAATG
*
4098501 CACAGCTAGGCCATTAA
64 CACAGCTAGGCCATTAT
* * * *
4098518 TATTTTACTCAACAGTATTTAATCGTTCATCTAACTGCATATATGACACCTTTC--CCAAATGCA
1 TCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGCATAAATGAAACCTTTCTACCAAATGCA
4098581 CAGCTAGGCCATTAT
66 CAGCTAGGCCATTAT
*
4098596 TCTTTTACTCAACGGTATTTAACCGTTCA
1 TCTTTTACTCAACAGTATTTAACCGTTCA
4098625 CCTTCTTATT
Statistics
Matches: 167, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
78 49 0.29
79 1 0.01
80 13 0.08
81 102 0.61
82 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.35
Consensus pattern (80 bp):
TCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGCATAAATGAAACCTTTCTACCAAATGCA
CAGCTAGGCCATTAT
Found at i:4098740 original size:45 final size:46
Alignment explanation
Indices: 4098691--4098778 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
4098681 ACACTTTGTA
*
4098691 TGAATTTCTTA-TTTCGCACACATAGTGCCCATACAAAAATTCGTT
1 TGAATTTCTTAGTTTCGCACACAAAGTGCCCATACAAAAATTCGTT
* *
4098736 TGAATTTCTTAGTTTTGCACACAAAGTGCCCATACAGAAATTC
1 TGAATTTCTTAGTTTCGCACACAAAGTGCCCATACAAAAATTC
4098779 ATACACTTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 11 0.28
46 28 0.72
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (46 bp):
TGAATTTCTTAGTTTCGCACACAAAGTGCCCATACAAAAATTCGTT
Found at i:4100304 original size:16 final size:16
Alignment explanation
Indices: 4100283--4100334 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
4100273 AGTCATTAAA
4100283 TTAATTTTTTAATAAT
1 TTAATTTTTTAATAAT
* * *
4100299 TTAATTTTGTAGTATT
1 TTAATTTTTTAATAAT
4100315 TTATATTTTTCTTAATAAT
1 TTA-A-TTTT-TTAATAAT
4100334 T
1 T
4100335 GTTTATATTC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 16 0.59
17 1 0.04
18 4 0.15
19 6 0.22
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (16 bp):
TTAATTTTTTAATAAT
Found at i:4107422 original size:24 final size:25
Alignment explanation
Indices: 4107395--4107442 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
4107385 AATCATGACA
4107395 ATAC-TTTCACCACAAATGATATTT
1 ATACATTTCACCACAAATGATATTT
4107419 ATACAATTTCACCACAAATGATAT
1 ATAC-ATTTCACCACAAATGATAT
4107443 AATTCTGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
26 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (25 bp):
ATACATTTCACCACAAATGATATTT
Found at i:4108199 original size:117 final size:114
Alignment explanation
Indices: 4107979--4108219 Score: 322
Period size: 117 Copynumber: 2.1 Consensus size: 114
4107969 AGCCCTCAGG
4107979 CAAAGCCAGAAGGAGAAGAGAAGCCTATTTATGGCACAAATCAAGACACCTACAAGCCAAAACCA
1 CAAAGCCAGAAGGAGAAGAGAAGCCTATTTATGGCACAAATCAAGACACCTACAAGCCAAAACCA
* * * *
4108044 GAAGAGAAGGAAAAGCCTGACTACAGCAAAAAGCCATACGTTGTGAAAC
66 GAAGAGAAAGAAAAACCTGACTACAACAAAAAGCCATACGTTGTAAAAC
* * *
4108093 CAAAGTCAGAAGGAGAAGATCAGAAGCCTATTTATGGCACAAATCAAGATACCTACAAGCCGAAA
1 CAAAGCCAGAAGGAGAAG---AGAAGCCTATTTATGGCACAAATCAAGACACCTACAAGCCAAAA
* ** **
4108158 CCAGAAGAGAAAGAAAAATCTGGTTACAACGGAAA-CTCATACGTTGTAAAAC
63 CCAGAAGAGAAAGAAAAACCTGACTACAACAAAAAGC-CATACGTTGTAAAAC
*
4108210 CAAAACCAGA
1 CAAAGCCAGA
4108220 TAACTACAAG
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
114 17 0.16
116 1 0.01
117 91 0.83
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.13
Consensus pattern (114 bp):
CAAAGCCAGAAGGAGAAGAGAAGCCTATTTATGGCACAAATCAAGACACCTACAAGCCAAAACCA
GAAGAGAAAGAAAAACCTGACTACAACAAAAAGCCATACGTTGTAAAAC
Found at i:4109692 original size:36 final size:36
Alignment explanation
Indices: 4109649--4109742 Score: 102
Period size: 36 Copynumber: 2.6 Consensus size: 36
4109639 TCATCACGCA
* * *
4109649 AACTCATTTATTGGCTTGTTTATAGATTCGTTTATTG
1 AACTCATTTATTAGCTTGTTTATAGATTCGTGTA-TC
** *
4109686 AA-TCATTTATTTA-CTTGTTTATTTATTTGTGTATC
1 AACTCATTTA-TTAGCTTGTTTATAGATTCGTGTATC
4109721 AACTCATTTATTAGCTTGTTTA
1 AACTCATTTATTAGCTTGTTTA
4109743 CTTCATATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
35 6 0.12
36 38 0.79
37 4 0.08
ACGTcount: A:0.23, C:0.11, G:0.12, T:0.54
Consensus pattern (36 bp):
AACTCATTTATTAGCTTGTTTATAGATTCGTGTATC
Found at i:4117487 original size:28 final size:28
Alignment explanation
Indices: 4117456--4117522 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
4117446 AGATTCAATT
*
4117456 TTTAGGATTTAGTG-TTT-GAGGTTTAAGG
1 TTTAGGATTT-GGGATTTGGAGG-TTAAGG
* *
4117484 TTTATGATTTGGGATTTGGAGGTTAGGG
1 TTTAGGATTTGGGATTTGGAGGTTAAGG
4117512 TTTAGGATTTG
1 TTTAGGATTTG
4117523 ATATTCAGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.06
28 27 0.82
29 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.46
Consensus pattern (28 bp):
TTTAGGATTTGGGATTTGGAGGTTAAGG
Found at i:4118891 original size:18 final size:19
Alignment explanation
Indices: 4118850--4118891 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
4118840 TTAAGTTAAA
*
4118850 TTTTTTAGTTCATGTAATG
1 TTTTTTAGTTCAAGTAATG
* *
4118869 ATTTTTAG-TCAAGTTATG
1 TTTTTTAGTTCAAGTAATG
4118887 TTTTT
1 TTTTT
4118892 AAATTATTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.21, C:0.05, G:0.14, T:0.60
Consensus pattern (19 bp):
TTTTTTAGTTCAAGTAATG
Found at i:4121572 original size:21 final size:21
Alignment explanation
Indices: 4121547--4121608 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
4121537 AAACTTGTAA
*
4121547 TTAATTTAATTTACTAATAAT
1 TTAATTTAATTTAATAATAAT
* * *
4121568 TTAATATAA-ATAATTACTAAT
1 TTAATTTAATTTAA-TAATAAT
4121589 TTAATATTAATATTAATAAT
1 TTAAT-TTAAT-TTAATAAT
4121609 CCTACTATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
20 2 0.07
21 19 0.63
22 3 0.10
23 3 0.10
24 3 0.10
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAATTTAATTTAATAATAAT
Found at i:4121606 original size:27 final size:25
Alignment explanation
Indices: 4121546--4121633 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 25
4121536 TAAACTTGTA
4121546 ATTAAT-TTAAT--TTACTAATAAT
1 ATTAATATTAATAATTACTAATAAT
*
4121568 -TTAATATAAATAATTACTAATTTAAT
1 ATTAATATTAATAATTACTAA--TAAT
*
4121594 ATTAATATTAATAATCCTACT-ATAAC
1 ATTAATATTAATAAT--TACTAATAAT
4121620 ATTTAATATTAATA
1 A-TTAATATTAATA
4121634 CTATATGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
21 5 0.09
22 4 0.07
24 7 0.13
26 8 0.15
27 25 0.46
28 1 0.02
29 4 0.07
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTAATATTAATAATTACTAATAAT
Found at i:4123223 original size:21 final size:21
Alignment explanation
Indices: 4123198--4123259 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
4123188 AAACTTGTAA
*
4123198 TTAATTTAATTTACTAATAAT
1 TTAATTTAATTTAATAATAAT
* * *
4123219 TTAATATAA-ATAATTACTAAT
1 TTAATTTAATTTAA-TAATAAT
4123240 TTAATATTAATATTAATAAT
1 TTAAT-TTAAT-TTAATAAT
4123260 CCTACTATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
20 2 0.07
21 19 0.63
22 3 0.10
23 3 0.10
24 3 0.10
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAATTTAATTTAATAATAAT
Found at i:4123257 original size:27 final size:25
Alignment explanation
Indices: 4123197--4123284 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 25
4123187 TAAACTTGTA
4123197 ATTAAT-TTAAT--TTACTAATAAT
1 ATTAATATTAATAATTACTAATAAT
*
4123219 -TTAATATAAATAATTACTAATTTAAT
1 ATTAATATTAATAATTACTAA--TAAT
*
4123245 ATTAATATTAATAATCCTACT-ATAAC
1 ATTAATATTAATAAT--TACTAATAAT
4123271 ATTTAATATTAATA
1 A-TTAATATTAATA
4123285 CTATATGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
21 5 0.09
22 4 0.07
24 7 0.13
26 8 0.15
27 25 0.46
28 1 0.02
29 4 0.07
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTAATATTAATAATTACTAATAAT
Found at i:4124078 original size:42 final size:42
Alignment explanation
Indices: 4124032--4124223 Score: 233
Period size: 42 Copynumber: 4.6 Consensus size: 42
4124022 GTCATGTACT
**** *
4124032 TTAGTGGCGTTTTTATAATAAATATTGTAATAGTTTTGTCCC
1 TTAGTGGCGTTTTTATAATAAACGCCGCAATAGTTTTGTCCC
* * *
4124074 TTAGTGGCGTTTTTGTAATAAATGCCGCAATAGTTTTGTCAC
1 TTAGTGGCGTTTTTATAATAAACGCCGCAATAGTTTTGTCCC
* * *
4124116 ATAGTGACGTTTTTGTAATAAACGCCGCAATAGTTTTGTCCC
1 TTAGTGGCGTTTTTATAATAAACGCCGCAATAGTTTTGTCCC
* * *
4124158 TTTGTGGCATTTTTATAATAAACGCCACAATAGTTTTGTCCC
1 TTAGTGGCGTTTTTATAATAAACGCCGCAATAGTTTTGTCCC
*
4124200 TTAGTGGTGTTTTTA-ATATAAACG
1 TTAGTGGCGTTTTTATA-ATAAACG
4124224 GCGCCATTGT
Statistics
Matches: 130, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
41 1 0.01
42 129 0.99
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (42 bp):
TTAGTGGCGTTTTTATAATAAACGCCGCAATAGTTTTGTCCC
Found at i:4128017 original size:21 final size:21
Alignment explanation
Indices: 4127993--4128033 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4127983 ATGAAGCGAG
*
4127993 GGAAGTAGAGAGAGAAGCAAT
1 GGAAGCAGAGAGAGAAGCAAT
4128014 GGAAGCAGAGAGAGAAGCAA
1 GGAAGCAGAGAGAGAAGCAA
4128034 CATATCGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.07, G:0.39, T:0.05
Consensus pattern (21 bp):
GGAAGCAGAGAGAGAAGCAAT
Found at i:4128569 original size:43 final size:43
Alignment explanation
Indices: 4128490--4128592 Score: 107
Period size: 43 Copynumber: 2.4 Consensus size: 43
4128480 TATAGATATA
* * *
4128490 GACCTTTTGCGGCATTTGTTCAAAAAAAATCGCTATATATCTT
1 GACCTTTTGCGGCATTTATTCAAAAAAAACCACTATATATCTT
* * ** *
4128533 GACCTTTTGCGGCGTTTATTCCAAAAATGCCACTATATCTCTT
1 GACCTTTTGCGGCATTTATTCAAAAAAAACCACTATATATCTT
* * *
4128576 TACGTATTGCGGCATTT
1 GACCTTTTGCGGCATTT
4128593 TTGTTGTCAA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (43 bp):
GACCTTTTGCGGCATTTATTCAAAAAAAACCACTATATATCTT
Found at i:4130506 original size:18 final size:18
Alignment explanation
Indices: 4130483--4130517 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
4130473 AGAGATTATC
4130483 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
4130501 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
4130518 AATATTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:4138796 original size:20 final size:20
Alignment explanation
Indices: 4138773--4138810 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
4138763 GTTTATGACT
4138773 GTTGGGGATGAGTTATAGCC
1 GTTGGGGATGAGTTATAGCC
4138793 GTTGGGGATGAGTTATAG
1 GTTGGGGATGAGTTATAG
4138811 TCTTTGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.05, G:0.42, T:0.32
Consensus pattern (20 bp):
GTTGGGGATGAGTTATAGCC
Found at i:4139926 original size:16 final size:16
Alignment explanation
Indices: 4139905--4139943 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
4139895 AATCCTTACA
4139905 AATATTTAAAAATAAT
1 AATATTTAAAAATAAT
**
4139921 AATATTTATTAATAAT
1 AATATTTAAAAATAAT
4139937 AATATTT
1 AATATTT
4139944 TTATTATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATATTTAAAAATAAT
Found at i:4140071 original size:2 final size:2
Alignment explanation
Indices: 4140064--4140113 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
4140054 TTTATCATCA
4140064 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4140106 AT AT AT AT
1 AT AT AT AT
4140114 TTCAAAAAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4144278 original size:17 final size:17
Alignment explanation
Indices: 4144249--4144295 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
4144239 ATAATTATTT
*
4144249 AAAAA-ATTAAATAAAA
1 AAAAATATTTAATAAAA
4144265 AAAAATATTTAATAAAA
1 AAAAATATTTAATAAAA
* *
4144282 AATAATTTTTAATA
1 AAAAATATTTAATA
4144296 TCACAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 5 0.19
17 22 0.81
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAAATATTTAATAAAA
Found at i:4146493 original size:28 final size:28
Alignment explanation
Indices: 4146462--4146565 Score: 181
Period size: 28 Copynumber: 3.7 Consensus size: 28
4146452 TTATACTATA
* *
4146462 TCGTTGAGCTAGTGTTTGAAACATTATG
1 TCGTCGAGCTAGTGCTTGAAACATTATG
4146490 TCGTCGAGCTAGTGCTTGAAACATTATG
1 TCGTCGAGCTAGTGCTTGAAACATTATG
4146518 TCGTCGAGCTAGTGCTTGAAACATTATG
1 TCGTCGAGCTAGTGCTTGAAACATTATG
*
4146546 TCGTTGAGCTAGTGCTTGAA
1 TCGTCGAGCTAGTGCTTGAA
4146566 CGCAATGTCA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (28 bp):
TCGTCGAGCTAGTGCTTGAAACATTATG
Found at i:4149236 original size:6 final size:6
Alignment explanation
Indices: 4149225--4149273 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
4149215 GACACGTATT
4149225 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
4149271 ACC
1 ACC
4149274 CGAGACGGAC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 10 0.23
6 33 0.77
ACGTcount: A:0.31, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:4149636 original size:5 final size:5
Alignment explanation
Indices: 4149622--4149653 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
4149612 CCGCCGCCGC
4149622 CGTC- CGTCT CGTCT CGTCT CGTCT CGTCT CGT
1 CGTCT CGTCT CGTCT CGTCT CGTCT CGTCT CGT
4149654 GGTCGTGGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.41, G:0.22, T:0.38
Consensus pattern (5 bp):
CGTCT
Found at i:4149661 original size:6 final size:6
Alignment explanation
Indices: 4149650--4149674 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4149640 TCGTCTCGTC
4149650 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
4149675 AATACGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:4149750 original size:6 final size:6
Alignment explanation
Indices: 4149739--4149769 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
4149729 TCGTCTCGTC
4149739 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
4149770 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:4149783 original size:95 final size:97
Alignment explanation
Indices: 4149616--4149794 Score: 319
Period size: 95 Copynumber: 1.9 Consensus size: 97
4149606 CGCGCGCCGC
4149616 CGCCGCCGTCCGTCTCGTCTCGTCTCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGTGGTAATACG
1 CGCCGCCGTCCGTCTCGTCTCGTCTCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGTGGTAATACG
4149681 TGTCTTCGACACGTCCGCGGGGGACTCTCGTG
66 TGTCTTCGACACGTCCGCGGGGGACTCTCGTG
*
4149713 CGCCGCCG-CCG-C-CGTCTCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTAATAC
1 CGCCGCCGTCCGTCTCGTCTCGTCTCGTCTCGT-CTCGTGGTCGTGGTCGTGGTCGTGGTAATAC
4149775 GTGTCTTCGACACGTCCGCG
65 GTGTCTTCGACACGTCCGCG
4149795 CGGATACTAT
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
94 18 0.22
95 51 0.64
96 3 0.04
97 8 0.10
ACGTcount: A:0.06, C:0.32, G:0.34, T:0.28
Consensus pattern (97 bp):
CGCCGCCGTCCGTCTCGTCTCGTCTCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGTGGTAATACG
TGTCTTCGACACGTCCGCGGGGGACTCTCGTG
Done.