Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5962497
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 23 of 30
Found at i:4328900 original size:19 final size:19
Alignment explanation
Indices: 4328862--4328897 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4328852 TAATTTAGTC
4328862 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
4328881 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
4328898 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:4328963 original size:20 final size:21
Alignment explanation
Indices: 4328926--4328966 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
4328916 AGTATTTTTC
**
4328926 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
4328947 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
4328967 ATATAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:4329621 original size:6 final size:7
Alignment explanation
Indices: 4329600--4329624 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4329590 TGTCTCTATT
4329600 AATTAAA
1 AATTAAA
4329607 AATTAAA
1 AATTAAA
4329614 AATTAAA
1 AATTAAA
4329621 AATT
1 AATT
4329625 CATATAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAA
Found at i:4339603 original size:14 final size:15
Alignment explanation
Indices: 4339586--4339624 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
4339576 ATTTTGCTTG
4339586 AAAAAAAAAGGAAAA
1 AAAAAAAAAGGAAAA
4339601 AAAAGAAAAAGGAAAA
1 AAAA-AAAAAGGAAAA
4339617 AAGAAAAA
1 AA-AAAAA
4339625 GGGGGTCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 16 0.73
17 2 0.09
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGGAAAA
Found at i:4339625 original size:14 final size:15
Alignment explanation
Indices: 4339586--4339626 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
4339576 ATTTTGCTTG
4339586 AAAA-AAAAAGGAAAA
1 AAAAGAAAAAGG-AAA
4339601 AAAAGAAAAAGG-AA
1 AAAAGAAAAAGGAAA
4339615 AAAAGAAAAAGG
1 AAAAGAAAAAGG
4339627 GGGTCAAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 14 0.56
15 4 0.16
16 7 0.28
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAGGAAA
Found at i:4339962 original size:16 final size:16
Alignment explanation
Indices: 4339941--4339980 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
4339931 ATACAATTAT
4339941 ATTTATTTCA-AGTTCA
1 ATTTATTTCAGAG-TCA
*
4339957 ATTTATTTGAGAGTCA
1 ATTTATTTCAGAGTCA
4339973 ATTTATTT
1 ATTTATTT
4339981 TTGGAAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (16 bp):
ATTTATTTCAGAGTCA
Found at i:4340914 original size:83 final size:83
Alignment explanation
Indices: 4340775--4341069 Score: 527
Period size: 83 Copynumber: 3.6 Consensus size: 83
4340765 AAGAGACTCA
* * *
4340775 ATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
4340840 TGGAAGATGAATGTGTTC
66 TGGAAGATGAATGTGTTC
*
4340858 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
*
4340923 TGGAAGATAAATGTGTTC
66 TGGAAGATGAATGTGTTC
* *
4340941 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTAAATG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
4341006 TGGAAGATGAATGTGTTC
66 TGGAAGATGAATGTGTTC
4341024 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
4341070 TAAGAACTAC
Statistics
Matches: 203, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 203 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
TGGAAGATGAATGTGTTC
Found at i:4342013 original size:113 final size:113
Alignment explanation
Indices: 4341806--4342374 Score: 881
Period size: 113 Copynumber: 5.0 Consensus size: 113
4341796 GATTCAAATC
* * *
4341806 CATCATTTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
4341871 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACATGAATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
*
4341919 CGTCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
4341984 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
* * ****
4342032 CATCATTTGGTGGATCATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
4342097 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATATGAATC
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
* * *
4342145 CATCATTTAATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
4342210 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
* * *
4342258 CATCAATTGATGGATTATCTTTTCCGGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAA
1 CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * *
4342322 AGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTGCAT-AATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
4342369 CTATCA
1 C-ATCA
4342375 CAGAAGGAGA
Statistics
Matches: 418, Mismatches: 37, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
111 5 0.01
112 76 0.18
113 337 0.81
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (113 bp):
CATCAATTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACATGAATT
Found at i:4342692 original size:3 final size:3
Alignment explanation
Indices: 4342684--4342765 Score: 146
Period size: 3 Copynumber: 27.3 Consensus size: 3
4342674 TACCCATATC
*
4342684 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
4342732 ATT ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4342766 AATATATTAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:4342808 original size:21 final size:21
Alignment explanation
Indices: 4342764--4342808 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
4342754 TTATTATTAT
* *
4342764 TAAATATATTAAATACATATA
1 TAAATATATTAAAAAAATATA
4342785 TAAATATTATTAAAAAAATA-A
1 TAAATA-TATTAAAAAAATATA
4342806 TAA
1 TAA
4342809 TTACAGGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAATATATTAAAAAAATATA
Found at i:4343306 original size:42 final size:41
Alignment explanation
Indices: 4343227--4343306 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 41
4343217 CTGAAAAAAA
* * ** *
4343227 AAAAAAAGGAAGAGACAGAAACAGGAGAGACACAGAGACAG
1 AAAAAAAGGAAGAAAAAGAAACAACAGAAACACAGAGACAG
*
4343268 AAAAAAAGGAAAGAAAAAGAAACAACAGAAACAGAGAGA
1 AAAAAAAGG-AAGAAAAAGAAACAACAGAAACACAGAGA
4343307 GATACAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 9 0.28
42 23 0.72
ACGTcount: A:0.65, C:0.10, G:0.25, T:0.00
Consensus pattern (41 bp):
AAAAAAAGGAAGAAAAAGAAACAACAGAAACACAGAGACAG
Found at i:4344179 original size:19 final size:19
Alignment explanation
Indices: 4344141--4344176 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4344131 TAATTTAGTC
4344141 ATTTATTTTATATGTTTTA
1 ATTTATTTTATATGTTTTA
4344160 ATTTATTTTAT-TGTTTT
1 ATTTATTTTATATGTTTT
4344177 TAAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (19 bp):
ATTTATTTTATATGTTTTA
Found at i:4344242 original size:20 final size:21
Alignment explanation
Indices: 4344205--4344245 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
4344195 AGTATTTTTC
**
4344205 TTTTATTATATTGTTAAATAT
1 TTTTATTATATTCATAAATAT
4344226 TTTTA-TATATTCATAAATAT
1 TTTTATTATATTCATAAATAT
4344246 ATATAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTATTATATTCATAAATAT
Found at i:4344460 original size:17 final size:17
Alignment explanation
Indices: 4344438--4344489 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
4344428 ATTTTTAAAT
4344438 AAATAAATATATTTTTG
1 AAATAAATATATTTTTG
** *
4344455 AAAT-AATA-AGATTAG
1 AAATAAATATATTTTTG
4344470 AAATTAAATATATTTTTG
1 AAA-TAAATATATTTTTG
4344488 AA
1 AA
4344490 TTTTTAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
17 8 0.31
18 6 0.23
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (17 bp):
AAATAAATATATTTTTG
Found at i:4345583 original size:2 final size:2
Alignment explanation
Indices: 4345576--4345651 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
4345566 TAGCTAAATA
4345576 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4345618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4345652 GTGTATAATA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4346099 original size:14 final size:14
Alignment explanation
Indices: 4346080--4346115 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
4346070 ACACCAGTTT
*
4346080 ATGCATCTTCAGGC
1 ATGCATCTTCAGAC
4346094 ATGCATCTTCAGAC
1 ATGCATCTTCAGAC
4346108 ATGCATCT
1 ATGCATCT
4346116 ACTCTCCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (14 bp):
ATGCATCTTCAGAC
Found at i:4348751 original size:15 final size:15
Alignment explanation
Indices: 4348729--4348761 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
4348719 TATTTGACTG
4348729 TGGAATAT-TTT-AA
1 TGGAATATATTTCAA
4348742 TGGAATATATTTCAA
1 TGGAATATATTTCAA
4348757 TGGAA
1 TGGAA
4348762 AATGGTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 3 0.17
15 7 0.39
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (15 bp):
TGGAATATATTTCAA
Found at i:4357459 original size:21 final size:21
Alignment explanation
Indices: 4357435--4357475 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4357425 CAATTATGAG
* * *
4357435 TATTTAATGTTAATTTTTAAT
1 TATTGAATGCTAAATTTTAAT
4357456 TATTGAATGCTAAATTTTAA
1 TATTGAATGCTAAATTTTAA
4357476 GTTAGAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (21 bp):
TATTGAATGCTAAATTTTAAT
Found at i:4359169 original size:30 final size:29
Alignment explanation
Indices: 4359126--4359255 Score: 125
Period size: 30 Copynumber: 4.4 Consensus size: 29
4359116 CTATTTAGCC
4359126 CCCTAAGTTTCTATTTTATCTATTTTAGT
1 CCCTAAGTTTCTATTTTATCTATTTTAGT
* * *
4359155 CCCTGAAGTGTCTATTTTATCTACTTTAAT
1 CCCT-AAGTTTCTATTTTATCTATTTTAGT
* * * *
4359185 CCTTAAATTTTTATTTTTTCTATTTTAGT
1 CCCTAAGTTTCTATTTTATCTATTTTAGT
* * * * *
4359214 CCTCTAGGTTTTTGTTTTATTTGTTTTAGT
1 CC-CTAAGTTTCTATTTTATCTATTTTAGT
*
4359244 CCCTAAGATTCT
1 CCCTAAGTTTCT
4359256 GCTTTTTGTC
Statistics
Matches: 79, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
29 32 0.41
30 47 0.59
ACGTcount: A:0.19, C:0.16, G:0.09, T:0.55
Consensus pattern (29 bp):
CCCTAAGTTTCTATTTTATCTATTTTAGT
Found at i:4363732 original size:2 final size:2
Alignment explanation
Indices: 4363725--4363749 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4363715 GTATACCCAA
4363725 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4363750 CAATAAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4365110 original size:39 final size:37
Alignment explanation
Indices: 4364995--4365269 Score: 143
Period size: 37 Copynumber: 7.7 Consensus size: 37
4364985 TCTTAAAATT
** * * **
4364995 AAATTTTGTCTCATTTGAGACAGTTTCCTTCAAAAAC
1 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
4365032 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
1 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
* *
4365069 AAATTTTGTCTCGCTTGAGACATTTTTTCTTTGTG-ATAC
1 AAATTTTGTCTCGCTTGAGACA--ATTTCTTTG-GAAAAC
** *** *
4365108 AAATTTTGAAT---TTGTTTC-A---CATT---AAAC
1 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
* * *
4365135 AAA-GTTGATCTCACTTGAGATCAACTTTCTCT--AAAAC
1 AAATTTTG-TCTCGCTTGAGA-CAA-TTTCTTTGGAAAAC
* * * *
4365172 AAACTTTGTCTCGCTTGAAACAATTTCTCT-AAAAAC
1 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
* * *
4365208 AAATTTTGTCTCACTTGAGACAATTTCTCT-AAAAAC
1 AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
*
4365244 AAATGTTT-TCTCACTTGAGACAATTT
1 AAAT-TTTGTCTCGCTTGAGACAATTT
4365270 TCCAAATTAT
Statistics
Matches: 191, Mismatches: 30, Indels: 35
0.75 0.12 0.14
Matches are distributed among these distances:
26 3 0.02
27 7 0.04
30 6 0.03
31 1 0.01
32 1 0.01
35 7 0.04
36 69 0.36
37 73 0.38
38 3 0.02
39 20 0.10
40 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (37 bp):
AAATTTTGTCTCGCTTGAGACAATTTCTTTGGAAAAC
Found at i:4365216 original size:36 final size:36
Alignment explanation
Indices: 4365143--4365269 Score: 186
Period size: 36 Copynumber: 3.5 Consensus size: 36
4365133 ACAAAGTTGA
*
4365143 TCTCACTTGAGATCAACTTTCTCT-AAAACAAACTTTG
1 TCTCACTTGAGA-CAA-TTTCTCTAAAAACAAATTTTG
* *
4365180 TCTCGCTTGAAACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAATTTTG
4365216 TCTCACTTGAGACAATTTCTCTAAAAACAAATGTTT-
1 TCTCACTTGAGACAATTTCTCTAAAAACAAAT-TTTG
4365252 TCTCACTTGAGACAATTT
1 TCTCACTTGAGACAATTT
4365270 TCCAAATTAT
Statistics
Matches: 83, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
35 7 0.08
36 63 0.76
37 13 0.16
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (36 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAATTTTG
Found at i:4365285 original size:72 final size:72
Alignment explanation
Indices: 4365131--4365275 Score: 181
Period size: 72 Copynumber: 2.0 Consensus size: 72
4365121 GTTTCACATT
* *
4365131 AAACAAAGTTGATCTCACTTGAGATCAACTTTCTCTAAAACAAACTTTGTCTCGCTTGAAACAAT
1 AAACAAATTTG-TCTCACTTGAGATCAACTTTCTCTAAAACAAACTTTGTCTCACTTGAAACAAT
*
4365196 TTCTCTAA
65 TTCTCCAA
* *
4365204 AAACAAATTTTGTCTCACTTGAGA-CAA-TTTCTCTAAAAACAAA-TGTTTTCTCACTTGAGACA
1 AAACAAA-TTTGTCTCACTTGAGATCAACTTTCTCT-AAAACAAACT-TTGTCTCACTTGAAACA
4365266 ATTT-TCCAA
63 ATTTCTCCAA
4365275 A
1 A
4365276 TTATGAATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
71 13 0.20
72 29 0.45
73 19 0.30
74 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (72 bp):
AAACAAATTTGTCTCACTTGAGATCAACTTTCTCTAAAACAAACTTTGTCTCACTTGAAACAATT
TCTCCAA
Found at i:4365782 original size:43 final size:40
Alignment explanation
Indices: 4365670--4365787 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 40
4365660 AAGATGGCCA
4365670 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCCTGATC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCCTGATC
* * * * * *
4365710 AGATCTCCTCATCACGTAGGAACAATGTCA-CCCTTAGATGACC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCCT-GAT---C
*
4365753 CGAACTCTTCATCACGTATGAGCAGTGTCATCCCC
1 AGAACTCTTCATCACGTATGAGCAGTGTCATCCCC
4365788 AACAACCAAC
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
39 4 0.07
40 28 0.47
43 25 0.42
44 3 0.05
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (40 bp):
AGAACTCTTCATCACGTATGAGCAGTGTCATCCCCTGATC
Found at i:4365962 original size:3 final size:3
Alignment explanation
Indices: 4365954--4365992 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
4365944 TAATTTTAAT
4365954 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4365993 ATAATAGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4366944 original size:14 final size:14
Alignment explanation
Indices: 4366925--4366985 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 14
4366915 AGAGTATTAA
*
4366925 CTCTCTCTATCTCC
1 CTCTCTCTCTCTCC
* *
4366939 CTCTCTCCCTCTCT
1 CTCTCTCTCTCTCC
*
4366953 CTCTCTCCCTCTCTC
1 CTCTCTCTCTCTC-C
4366968 C-CTCTCTCTCTCC
1 CTCTCTCTCTCTCC
4366981 CTCTC
1 CTCTC
4366986 CATTTATTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 2 0.05
14 37 0.93
15 1 0.03
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (14 bp):
CTCTCTCTCTCTCC
Found at i:4366953 original size:22 final size:21
Alignment explanation
Indices: 4366925--4366985 Score: 97
Period size: 22 Copynumber: 2.9 Consensus size: 21
4366915 AGAGTATTAA
4366925 CTCTCTCTATCTCCCTCTCTCC
1 CTCTCTCT-TCTCCCTCTCTCC
4366947 CTCTCTCTCTCTCCCTCTCTCC
1 CTCTCTCT-TCTCCCTCTCTCC
4366969 CTCTCTC-TCTCCCTCTC
1 CTCTCTCTTCTCCCTCTC
4366986 CATTTATTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 10 0.26
22 28 0.74
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (21 bp):
CTCTCTCTTCTCCCTCTCTCC
Found at i:4366985 original size:8 final size:8
Alignment explanation
Indices: 4366934--4366975 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
4366924 ACTCTCTCTA
4366934 TCTCCCTC
1 TCTCCCTC
4366942 TCTCCCTC
1 TCTCCCTC
4366950 TCT--CTC
1 TCTCCCTC
4366956 TCTCCCTC
1 TCTCCCTC
4366964 TCTCCCTC
1 TCTCCCTC
4366972 TCTC
1 TCTC
4366976 TCTCCCTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.19
8 26 0.81
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (8 bp):
TCTCCCTC
Found at i:4367628 original size:30 final size:30
Alignment explanation
Indices: 4367580--4367710 Score: 115
Period size: 30 Copynumber: 4.3 Consensus size: 30
4367570 GTAATTACTA
* * *
4367580 TTTAGCCCCCTAAATTTCT-TTCTTATCTAT
1 TTTAGTCCCTTAAGTTTCTATT-TTATCTAT
*
4367610 TTTAGTCCCTGAAGTTTCTATTTTATCTAT
1 TTTAGTCCCTTAAGTTTCTATTTTATCTAT
* *
4367640 TTTAAT-CCTTAATGTTT-TATTTTTTTTCTAT
1 TTTAGTCCCTTAA-GTTTCTA--TTTTATCTAT
* * * *
4367671 TTTAGTCCTTTAGGTTTCTATTTTATTTGT
1 TTTAGTCCCTTAAGTTTCTATTTTATCTAT
4367701 TTTAGTCCCT
1 TTTAGTCCCT
4367711 AAGATTATGC
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
29 7 0.09
30 48 0.59
31 20 0.25
32 6 0.07
ACGTcount: A:0.18, C:0.17, G:0.08, T:0.58
Consensus pattern (30 bp):
TTTAGTCCCTTAAGTTTCTATTTTATCTAT
Found at i:4367673 original size:31 final size:32
Alignment explanation
Indices: 4367602--4367694 Score: 95
Period size: 31 Copynumber: 3.0 Consensus size: 32
4367592 AATTTCTTTC
* *
4367602 TTATCTATTTTAGTCCCTGAA-GTTTCTA--TT
1 TTATCTATTTTAAT-CCTTAAGGTTTCTATTTT
*
4367632 TTATCTATTTTAATCCTTAATGTTT-TATTTT
1 TTATCTATTTTAATCCTTAAGGTTTCTATTTT
* * *
4367663 TTTTCTATTTTAGTCCTTTAGGTTTCTATTTT
1 TTATCTATTTTAATCCTTAAGGTTTCTATTTT
4367695 ATTTGTTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.13
30 17 0.32
31 23 0.43
32 6 0.11
ACGTcount: A:0.18, C:0.13, G:0.08, T:0.61
Consensus pattern (32 bp):
TTATCTATTTTAATCCTTAAGGTTTCTATTTT
Found at i:4367725 original size:61 final size:61
Alignment explanation
Indices: 4367605--4367733 Score: 138
Period size: 61 Copynumber: 2.1 Consensus size: 61
4367595 TTCTTTCTTA
* * *
4367605 TCTATTTTAGTCCCTGAAGTTTCTATTTTATCTATTTTAATCCTTAATGTTTTATTTTTTT
1 TCTATTTTAGTCCCTGAAGTTTCTATTTTATCTATTTTAATCCCTAATGTATTATTTTTTG
* * * * * *
4367666 TCTATTTTAGTCCTTTAGGTTTCTATTTTATTTGTTTTAGTCCCTAA-G-ATTATGCTTTTTG
1 TCTATTTTAGTCCCTGAAGTTTCTATTTTATCTATTTTAATCCCTAATGTATTAT--TTTTTG
4367727 TC-ATTTT
1 TCTATTTT
4367734 GATCATTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
59 4 0.07
60 6 0.11
61 47 0.82
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (61 bp):
TCTATTTTAGTCCCTGAAGTTTCTATTTTATCTATTTTAATCCCTAATGTATTATTTTTTG
Found at i:4378068 original size:13 final size:13
Alignment explanation
Indices: 4378050--4378076 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4378040 AAACTATAAC
4378050 ACCCTTAACCCGT
1 ACCCTTAACCCGT
4378063 ACCCTTAACCCGT
1 ACCCTTAACCCGT
4378076 A
1 A
4378077 TACATCTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.44, G:0.07, T:0.22
Consensus pattern (13 bp):
ACCCTTAACCCGT
Found at i:4382611 original size:39 final size:39
Alignment explanation
Indices: 4382546--4382646 Score: 125
Period size: 39 Copynumber: 2.6 Consensus size: 39
4382536 ATTTTATATA
*
4382546 ATAACAATATTAATAAAATAATACTAA-TAAATGCCACATC
1 ATAAAAATATTAAT-AAATAATACTAACT-AATGCCACATC
* ** *
4382586 ATAAAAATATTAATAAATAATACTAACTGATGCCATGTT
1 ATAAAAATATTAATAAATAATACTAACTAATGCCACATC
4382625 ATAAAAATATTAATAAA-AATAC
1 ATAAAAATATTAATAAATAATAC
4382647 ATTTCAATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 5 0.09
39 36 0.65
40 14 0.25
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (39 bp):
ATAAAAATATTAATAAATAATACTAACTAATGCCACATC
Found at i:4382761 original size:21 final size:21
Alignment explanation
Indices: 4382737--4382778 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
4382727 AGTAAGAAGA
4382737 TAGTTGAATGATGTAATTTAC
1 TAGTTGAATGATGTAATTTAC
4382758 TAGTTGAATGATGTAATTTAC
1 TAGTTGAATGATGTAATTTAC
4382779 CCAAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (21 bp):
TAGTTGAATGATGTAATTTAC
Found at i:4388022 original size:25 final size:25
Alignment explanation
Indices: 4387989--4388049 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 25
4387979 TTTGAAAATA
4387989 TTTTTAAAATATATATAATATATAG
1 TTTTTAAAATATATATAATATATAG
* * *
4388014 TTTTGAAAACATTTATATATTATATAG
1 TTTT-TAAA-ATATATATAATATATAG
4388041 TTTTTAAAA
1 TTTTTAAAA
4388050 CATTTTGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 5 0.17
26 6 0.20
27 19 0.63
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (25 bp):
TTTTTAAAATATATATAATATATAG
Found at i:4388038 original size:27 final size:27
Alignment explanation
Indices: 4388000--4388054 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
4387990 TTTTAAAATA
4388000 TATATAATATATAGTTTTGAAAACATT
1 TATATAATATATAGTTTTGAAAACATT
* *
4388027 TATATATTATATAGTTTTTAAAACATT
1 TATATAATATATAGTTTTGAAAACATT
4388054 T
1 T
4388055 TGAAAACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (27 bp):
TATATAATATATAGTTTTGAAAACATT
Found at i:4388056 original size:38 final size:36
Alignment explanation
Indices: 4388014--4388234 Score: 221
Period size: 36 Copynumber: 5.9 Consensus size: 36
4388004 TAATATATAG
*
4388014 TTTTGAAAACATTTATATATTATATAGTTTTTAAAACA
1 TTTTGAAAA-A-TTATATAATATATAGTTTTTAAAACA
* * *
4388052 TTTTGAAAACTTATATAATATATATTTTTTAACACA
1 TTTTGAAAAATTATATAATATATAGTTTTTAAAACA
* * *
4388088 TTTTGAAAACTTATATAGTATATAGTTTTTTAAA-A
1 TTTTGAAAAATTATATAATATATAGTTTTTAAAACA
* * *
4388123 TTTCTGGAAAATTATATAATATATA-ATTTTAAAAGCGTTTT
1 TTT-TGAAAAATTATATAATATATAGTTTTTAAAA-C----A
* *
4388164 TTTTGAAAAATTATATAACATATAGTTTTAAAAACA
1 TTTTGAAAAATTATATAATATATAGTTTTTAAAACA
* *
4388200 TTTTTGAAAAATTATATAATATATAATTTTAAAAA
1 -TTTTGAAAAATTATATAATATATAGTTTTTAAAA
4388235 AACATTTTTT
Statistics
Matches: 153, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
35 11 0.07
36 71 0.46
37 32 0.21
38 9 0.06
40 20 0.13
41 10 0.07
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.46
Consensus pattern (36 bp):
TTTTGAAAAATTATATAATATATAGTTTTTAAAACA
Found at i:4388073 original size:63 final size:64
Alignment explanation
Indices: 4387965--4388090 Score: 175
Period size: 63 Copynumber: 2.0 Consensus size: 64
4387955 TGAAAGTTTG
* * *
4387965 TATATTATATGGTTTTTGAAAATATTTTTAAAATATATATAATATATAGTTTTGAAAACATTTA
1 TATATTATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATAGTTTTGAAAACATTTA
* * *
4388029 TATATTATATAGTTTTT-AAAACATTTTGAAAACT-TATATAATATATATTTTTTAACACATTT
1 TATATTATATAGTTTTTGAAAACATTTTGAAAA-TATATATAATATATAGTTTTGAAAACATTT
4388091 TGAAAACTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
63 38 0.69
64 17 0.31
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (64 bp):
TATATTATATAGTTTTTGAAAACATTTTGAAAATATATATAATATATAGTTTTGAAAACATTTA
Found at i:4388252 original size:37 final size:36
Alignment explanation
Indices: 4388026--4388258 Score: 182
Period size: 36 Copynumber: 6.3 Consensus size: 36
4388016 TTGAAAACAT
* * * * *
4388026 TTATATATTATATAGTTTTTAAAACATTTTGAAAAC
1 TTATATAATATATAATTTTAAAAACATTTTTAAAAA
* * * * *
4388062 TTATATAATATATATTTTTTAACACATTTTGAAAAC
1 TTATATAATATATAATTTTAAAAACATTTTTAAAAA
* * ** **
4388098 TTATATAGTATATAGTTTTTTAAA-ATTTCTGGAAAA
1 TTATATAATATATAATTTTAAAAACATTT-TTAAAAA
* *
4388134 TTATATAATATATAATTTTAAAAGCGTTTTTTTTGAAAAA
1 TTATATAATATATAATTTTAAAAAC---ATTTTT-AAAAA
* *
4388174 TTATATAACATATAGTTTTAAAAACATTTTTGAAAAA
1 TTATATAATATATAATTTTAAAAACATTTTT-AAAAA
* *
4388211 TTATATAATATATAATTTTAAAAAAACATTTTT-TAAC
1 TTATATAATATATAATTTT--AAAAACATTTTTAAAAA
4388248 TTATATAATAT
1 TTATATAATAT
4388259 TTTAAAATAA
Statistics
Matches: 164, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
35 4 0.02
36 77 0.47
37 41 0.25
39 13 0.08
40 29 0.18
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (36 bp):
TTATATAATATATAATTTTAAAAACATTTTTAAAAA
Found at i:4389634 original size:15 final size:15
Alignment explanation
Indices: 4389603--4389648 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
4389593 TATTTATTTA
4389603 TTTATTTTATATT-TT
1 TTTATTTTAT-TTCTT
4389618 TTTATTTCT-TTTCTT
1 TTTATTT-TATTTCTT
*
4389633 TTTCTTTTATTTCTT
1 TTTATTTTATTTCTT
4389648 T
1 T
4389649 GATTTACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.11
15 23 0.85
16 1 0.04
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTATTTTATTTCTT
Found at i:4389642 original size:20 final size:19
Alignment explanation
Indices: 4389593--4389648 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
4389583 TGAAATAATT
* *
4389593 TATTTATTTATTTATTTTA
1 TATTTTTTTATTTCTTTTA
*
4389612 TATTTTTTTATTTCTTTTC
1 TATTTTTTTATTTCTTTTA
*
4389631 TTTTTCTTTTATTTCTTT
1 TATTT-TTTTATTTCTTT
4389649 GATTTACTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 20 0.62
20 12 0.38
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (19 bp):
TATTTTTTTATTTCTTTTA
Found at i:4389692 original size:25 final size:25
Alignment explanation
Indices: 4389615--4389693 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 25
4389605 TATTTTATAT
* *
4389615 TTTTTTATTTCTTTTCTTTTTCTTTTA
1 TTTTTTGTTTCTTTT-TTATTC-TTTA
*
4389642 TTTCTTTGATTTACTTTTTTAATCTTTA
1 TTT-TTTG-TTT-CTTTTTTATTCTTTA
*
4389670 TTTTTTGTTTCTCTTTTATTCTTT
1 TTTTTTGTTTCTTTTTTATTCTTT
4389694 TTTATGTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
25 12 0.27
26 3 0.07
27 7 0.16
28 10 0.23
29 7 0.16
30 5 0.11
ACGTcount: A:0.10, C:0.11, G:0.03, T:0.76
Consensus pattern (25 bp):
TTTTTTGTTTCTTTTTTATTCTTTA
Found at i:4395229 original size:85 final size:85
Alignment explanation
Indices: 4394851--4395555 Score: 648
Period size: 85 Copynumber: 8.4 Consensus size: 85
4394841 TTTAAGACAA
* * * * *
4394851 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTACCAAC-AAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
* * * *
4394915 GCTCAGC-TCCAAGGAACAT
66 ACTCAGCTTCGAGGGCACAT
* * * * *
4394934 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG---CC-AAAGACCCTCGAGTTCGATTAC
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
*
4394995 ACTCAGCTTCGAGGACACAT
66 ACTCAGCTTCGAGGGCACAT
* * * * *
4395015 CATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
* * *
4395080 GCTCAGC-TCAACGGCACAT
66 ACTCAGCTTCGAGGGCACAT
** * * ** * * *
4395099 CATTTGCATAATAGCTTAAGT-TGAGAAGGGCTATCTATCACCAAAAGACCCCCGAGTTTGATTA
1 CATTTGCAGCATAACTTAAGTCT-AGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTA
*
4395163 CACTCAGCTTCGAGGGCATAT
65 CACTCAGCTTCGAGGGCACAT
* * * * * *
4395184 CATTTACAGCATAACTCAAGGT-TAGAAAGTTTATCTGTCACCAAAAGACCTTCGAGTTCGACTA
1 CATTTGCAGCATAACTTAA-GTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTA
*
4395248 CGCTCAGCTTCGAGGGCACAT
65 CACTCAGCTTCGAGGGCACAT
* * * * * *
4395269 CATTTGCAGCACAATTTAAGTCTAAAAGGGTTATCTGCCAACAAAAGACCTTTGAGTTCGACTAC
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
* * * *
4395334 GCTCAGC-TCAACGACACAT
66 ACTCAGCTTCGAGGGCACAT
* * * * * *
4395353 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG---CC-AAAGACCCTCGAGTTTGATTAC
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
4395414 ACTCAGCTTCGAGGGCACAT
66 ACTCAGCTTCGAGGGCACAT
* * * * *
4395434 CATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCATAAGACCTTTGAGTTCGACTA
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCC-ACCAAAAGACCCTCGAGTTCGACTA
* * *
4395499 CAATCAGC-TCCAAGGCACAT
65 CACTCAGCTTCGAGGGCACAT
* * * * * *
4395519 CATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCTG
1 CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTG
4395556 TCAATAAAAT
Statistics
Matches: 497, Mismatches: 110, Indels: 28
0.78 0.17 0.04
Matches are distributed among these distances:
80 51 0.10
81 82 0.16
83 31 0.06
84 106 0.21
85 201 0.40
86 26 0.05
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
CATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAAGACCCTCGAGTTCGACTAC
ACTCAGCTTCGAGGGCACAT
Found at i:4395248 original size:169 final size:164
Alignment explanation
Indices: 4394851--4395564 Score: 602
Period size: 165 Copynumber: 4.3 Consensus size: 164
4394841 TTTAAGACAA
* *
4394851 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTACCAAC-AAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTCAAGGTTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* *
4394915 GCTCAGCTCCAAGGAACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACC
66 GCTCAGCT-CAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTACCAAAGACC
*
4394980 CTCGAGTTCGATTACACTCAGCTTCGAGGACACAT
130 CCCGAGTTCGATTACACTCAGCTTCGAGGACACAT
* * * *
4395015 CATTTGCAGCACAACTTAA-GTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTA
1 CATTTGCAGCATAACTCAAGGT-TAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
4395079 CGCTCAGCTCAACGGCACATCATTTGCA-TAATAGCTTAAGTTGAGAAGGGCTATCTATCACCAA
65 CGCTCAGCTCAA-GGCACATCATTTGCAGT-ATAGCTTAAGTCGAGAAGGGCTATC--T-ACC-A
* * *
4395143 AAGACCCCCGAGTTTGATTACACTCAGCTTCGAGGGCATAT
124 AAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGACACAT
* * * * *
4395184 CATTTACAGCATAACTCAAGGTTAGAAAGTTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
1 CATTTGCAGCATAACTCAAGGTTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * * ** * * * *
4395249 GCTCAGCTTCGAGGGCACATCATTTGCAGCACAATTTAAGTCTAAAAGGGTTATCTGCCAACAAA
66 GCTCAGC-TC-AAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCT----ACCAA
*** * * * *
4395314 AGACCTTTGAGTTCGACTACGCTCAGC-TCAACGACACAT
125 AGACCCCCGAGTTCGATTACACTCAGCTTCGAGGACACAT
* * * * * * * *
4395353 CATTTGCAGTATAGCTTAA-GTCGAGAAGGGCTATCTG-C--C-AAAGACCCTCGAGTTTGATTA
1 CATTTGCAGCATAACTCAAGGT-TAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * * * *
4395413 CACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTTAAATCGAGAAGGGTTATCTGCCAACCA
65 CGCTCAGC-TC-AAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCT----ACCA
*** * * * *
4395478 TAAGACCTTTGAGTTCGACTACAATCAGCTCCAAGG-CACAT
124 -AAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGACACAT
* * ** * * *
4395519 CATTTGCAACATAGCTCAAGGCAAGAAGGGCTATCTGTCAATAAAA
1 CATTTGCAGCATAACTCAAGGTTAGAAGGGTTATCTGCCAACAAAA
4395565 TTGTCGAGTT
Statistics
Matches: 456, Mismatches: 71, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
163 1 0.00
164 39 0.09
165 143 0.31
166 62 0.14
167 7 0.02
168 6 0.01
169 132 0.29
170 63 0.14
171 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
CATTTGCAGCATAACTCAAGGTTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTACCAAAGACCC
CCGAGTTCGATTACACTCAGCTTCGAGGACACAT
Found at i:4395756 original size:167 final size:167
Alignment explanation
Indices: 4395568--4395924 Score: 579
Period size: 167 Copynumber: 2.1 Consensus size: 167
4395558 AATAAAATTG
*
4395568 TCGAGTTCGATTCCATTCAGCTCGATGACACATCACACTATTGTCCGGTTGTAATCGAGATTTTC
1 TCGAGTTCGATTCCATTCAGCTCGATGACACATCACACTATTGTCCGGTTGCAATCGAGATTTTC
* * * *
4395633 AAGTCGAGAAGAAGACTCGGGTTAACCGTTCCTTAGTAACAAGAAATCCTTTTTCGGCAGTGTAA
66 AAGTCGAGAAGAAGACTCGGATTAACCGTCCCTTAGTAACAAGAAATCCTTTTTCGGAAGCGTAA
4395698 CTTAAGTCGAGAAAAGCTATCTGCCAACGAAGACTTT
131 CTTAAGTCGAGAAAAGCTATCTGCCAACGAAGACTTT
* * * *
4395735 TCGAGTTCGATTCCATTCAGCTTGATGATACATCACACTATTGTCTGGTTGCAATCGAGGTTTTC
1 TCGAGTTCGATTCCATTCAGCTCGATGACACATCACACTATTGTCCGGTTGCAATCGAGATTTTC
* * *
4395800 AGGTCGAGAAGAAGACTCGGATTAACCGTCCCTTAGTGACAAGAAATCCTTTTTCGGAAGCGTAG
66 AAGTCGAGAAGAAGACTCGGATTAACCGTCCCTTAGTAACAAGAAATCCTTTTTCGGAAGCGTAA
* * *
4395865 CTTAAGTCGAGAAAAGTTATCTGTCAACTAAGACTTT
131 CTTAAGTCGAGAAAAGCTATCTGCCAACGAAGACTTT
4395902 TCGAGTTCGATTCCATTCAGCTC
1 TCGAGTTCGATTCCATTCAGCTC
4395925 AAGGGCTTAT
Statistics
Matches: 174, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
167 174 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (167 bp):
TCGAGTTCGATTCCATTCAGCTCGATGACACATCACACTATTGTCCGGTTGCAATCGAGATTTTC
AAGTCGAGAAGAAGACTCGGATTAACCGTCCCTTAGTAACAAGAAATCCTTTTTCGGAAGCGTAA
CTTAAGTCGAGAAAAGCTATCTGCCAACGAAGACTTT
Found at i:4396297 original size:38 final size:38
Alignment explanation
Indices: 4396255--4396559 Score: 209
Period size: 36 Copynumber: 8.2 Consensus size: 38
4396245 TCAGAAAATG
* * *
4396255 ATTTTTTAAAGTTTGTATATTATATGGTTTTTG-AAA-
1 ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
* * *
4396291 ATATTTTAAAATATATATAATATATAG-TTTTGAAAAC
1 ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
**
4396328 ATTTTGAAAACATTTATATATTATATAGTTTTT-AAAAC
1 ATTTTTTAAA-ATTTATATATTATATAGTTTTTGAAAAC
* * * *
4396366 A-TTTTGAAAACTTATATAATATATAGTTTTT-AACAC
1 ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
* * * *
4396402 A-TTTTGAAAACTTATATAGTATATAGTTTTTTAAAA-
1 ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
** * * *
4396438 ATTTTGGAAAA-TTATATAATATATA-ATTTTAAAAAC
1 ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
* ** *
4396474 ATTTTTTTTGAAAAATTATATAACATATAG-TTTTAAAAAC
1 A--TTTTTT-AAAATTTATATATTATATAGTTTTTGAAAAC
* * * * **
4396514 ATTTTTGAAAAATTATATAATATATAATTTTAAAAAAAC
1 ATTTTTTAAAATTTATATATTATATAGTTTT-TGAAAAC
4396553 ATTTTTT
1 ATTTTTT
4396560 TAACTTATAT
Statistics
Matches: 225, Mismatches: 30, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
35 13 0.06
36 93 0.41
37 42 0.19
38 33 0.15
39 20 0.09
40 24 0.11
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.47
Consensus pattern (38 bp):
ATTTTTTAAAATTTATATATTATATAGTTTTTGAAAAC
Found at i:4396332 original size:11 final size:11
Alignment explanation
Indices: 4396318--4396342 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4396308 TAATATATAG
4396318 TTTTGAAAACA
1 TTTTGAAAACA
4396329 TTTTGAAAACA
1 TTTTGAAAACA
4396340 TTT
1 TTT
4396343 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:4396348 original size:74 final size:70
Alignment explanation
Indices: 4396270--4396606 Score: 315
Period size: 74 Copynumber: 4.6 Consensus size: 70
4396260 TTAAAGTTTG
* *
4396270 TATATTATATGGTTTTTGAAAATATTTT-AAAATATATATAATATATAGTTTTGAAAACATTTTG
1 TATATTATATAGTTTTT-AAAA-ATTTTGAAAAT-TATATAATATATAGTTTTAAAAACATTTTG
4396334 AAAACATTTA
63 AAAAC--TTA
* *
4396344 TATATTATATAGTTTTTAAAACATTTTGAAAACTTATATAATATATAGTTTTTAACACATTTTGA
1 TATATTATATAGTTTTTAAAA-ATTTTGAAAA-TTATATAATATATAGTTTTAAAAACATTTTGA
4396409 AAACTTA
64 AAACTTA
* *
4396416 TATAGTATATAGTTTTTTAAAAATTTTGGAAAATTATATAATATATAATTTTAAAAACATTTTTT
1 TATATTATATAG-TTTTTAAAAATTTT-GAAAATTATATAATATATAGTTTTAAAAACA----TT
*
4396481 TTGAAAAATTA
60 TTGAAAACTTA
** * *
4396492 TATAACATATAGTTTTAAAAACATTTTTGAAAAATTATATAATATATAATTTTAAAAAAACATTT
1 TATATTATATAGTTTTTAAAA-A-TTTTG-AAAATTATATAATATATAGTTTT--AAAAACATTT
***
4396557 TTTTAACTTA
61 TGAAAACTTA
** *
4396567 TATA--ATAT--TTTAAAATAAATTTTGAAAACTATATAATATA
1 TATATTATATAGTTTTTAA-AAATTTTGAAAATTATATAATATA
4396607 GTTTTGGAAA
Statistics
Matches: 231, Mismatches: 18, Indels: 33
0.82 0.06 0.12
Matches are distributed among these distances:
69 15 0.06
70 5 0.02
71 7 0.03
72 44 0.19
73 27 0.12
74 53 0.23
75 22 0.10
76 24 0.10
77 27 0.12
79 7 0.03
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.45
Consensus pattern (70 bp):
TATATTATATAGTTTTTAAAAATTTTGAAAATTATATAATATATAGTTTTAAAAACATTTTGAAA
ACTTA
Found at i:4396692 original size:3 final size:3
Alignment explanation
Indices: 4396684--4396727 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
4396674 TTTAGGATAC
* *
4396684 ATT ATT ATT ATT ATTT ATC ATT ATT ATT ATT ATTT ATT TTT ATT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
4396728 TATTTTTTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
3 29 0.83
4 6 0.17
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:4396727 original size:19 final size:19
Alignment explanation
Indices: 4396683--4396720 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4396673 TTTTAGGATA
4396683 CATTATTATTATTATTTAT
1 CATTATTATTATTATTTAT
4396702 CATTATTATTATTATTTAT
1 CATTATTATTATTATTTAT
4396721 TTTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
CATTATTATTATTATTTAT
Found at i:4396734 original size:10 final size:10
Alignment explanation
Indices: 4396684--4396731 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
4396674 TTTAGGATAC
4396684 ATTA-TTATT
1 ATTATTTATT
*
4396693 ATTATTTATC
1 ATTATTTATT
4396703 ATTA-TTATT
1 ATTATTTATT
4396712 ATTATTTATT
1 ATTATTTATT
*
4396722 TTTATTTATT
1 ATTATTTATT
4396732 TTTTTCGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
9 12 0.35
10 22 0.65
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTATTTATT
Found at i:4397973 original size:9 final size:9
Alignment explanation
Indices: 4397944--4398013 Score: 52
Period size: 9 Copynumber: 7.3 Consensus size: 9
4397934 AAATAATTTA
*
4397944 TTTATTTGT
1 TTTATTTCT
4397953 TTTATATT-T
1 TTTAT-TTCT
4397962 TTTATTTCTT
1 TTTATTTC-T
*
4397972 TTCTTTTTCT
1 TT-TATTTCT
4397982 TTTATTTCT
1 TTTATTTCT
*
4397991 TTGATTTACT
1 TTTATTT-CT
*
4398001 TTGATTTACT
1 TTTATTT-CT
4398011 TTT
1 TTT
4398014 TTAATCTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
8 2 0.04
9 23 0.44
10 22 0.42
11 5 0.10
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (9 bp):
TTTATTTCT
Found at i:4398004 original size:10 final size:10
Alignment explanation
Indices: 4397980--4398012 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
4397970 TTTTCTTTTT
*
4397980 CTTTTATTT-
1 CTTTGATTTA
4397989 CTTTGATTTA
1 CTTTGATTTA
4397999 CTTTGATTTA
1 CTTTGATTTA
4398009 CTTT
1 CTTT
4398013 TTTAATCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (10 bp):
CTTTGATTTA
Found at i:4398074 original size:2 final size:2
Alignment explanation
Indices: 4398067--4398111 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
4398057 TTATTACTAT
4398067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4398109 TA T
1 TA T
4398112 TATGTTTTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4398177 original size:20 final size:22
Alignment explanation
Indices: 4398137--4398178 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4398127 TTATATTCAT
4398137 TTTTTTATTTTTCTATCTAATA
1 TTTTTTATTTTTCTATCTAATA
*
4398159 TTTTTTCTTTTTC-AT-TAATA
1 TTTTTTATTTTTCTATCTAATA
4398179 ATCTCAGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTTTATTTTTCTATCTAATA
Found at i:4398877 original size:3 final size:3
Alignment explanation
Indices: 4398858--4398927 Score: 74
Period size: 3 Copynumber: 24.0 Consensus size: 3
4398848 TTTATTTGAA
* * *
4398858 TAT TAT T-T ATAT T-T TAT TAT TAT TAT TAT AAT TAT AAT TAT AAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
4398902 TAT AAT TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
4398928 CAAATAATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
2 5 0.09
3 49 0.89
4 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:4398953 original size:41 final size:40
Alignment explanation
Indices: 4398859--4398953 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 40
4398849 TTATTTGAAT
*
4398859 ATTATTTATATTTTATTATTATTATTATAATTATAATTATA
1 ATTATTTATATTATATTATTATTATTATAA-TATAATTATA
* *
4398900 ATTA-TAATTATTATATTATTATTATTATCAA-ATAATTTTA
1 ATTATTTA-TATTATATTATTATTATTAT-AATATAATTATA
*
4398940 TTTATTTACTATTA
1 ATTATTTA-TATTA
4398954 CAGACCCAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
40 13 0.29
41 30 0.67
42 2 0.04
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (40 bp):
ATTATTTATATTATATTATTATTATTATAATATAATTATA
Found at i:4400529 original size:120 final size:117
Alignment explanation
Indices: 4400336--4400561 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 117
4400326 ATTTTAATTC
* * * * *
4400336 TATTTTAATATTTATTTATTTTTCAATATTAAGAAAGGGTAGTCTTAAAACAACTGGATGTCCAT
1 TATTCTAATATTTATTTATTTTTCAATATGAAGAAAGGCTAGTCTTAAAACAACTAGAAGTCCAT
*
4400401 TTTATGATATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAAT
66 TTTATGATATTTCTAAATAAATAAATATCCTA-TTTATAAATTATATATTAAT
* ** *
4400454 TATTCTAATTATTTATTTATTTTTTAATATCGAAGAAAAGAGCT-GTCTTAAGGCACCTAGAAGT
1 TATTCTAA-TATTTATTTATTTTTCAATAT-GAAG-AAAG-GCTAGTCTTAAAACAACTAGAAGT
* **
4400518 CC-TTTTCTGATATTTCTAAATAAATAAATATTTTATTTATAAAT
62 CCATTTTATGATATTTCTAAATAAATAAATATCCTATTTATAAAT
4400562 AAATTAATAT
Statistics
Matches: 91, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
118 7 0.08
119 29 0.32
120 32 0.35
121 21 0.23
122 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (117 bp):
TATTCTAATATTTATTTATTTTTCAATATGAAGAAAGGCTAGTCTTAAAACAACTAGAAGTCCAT
TTTATGATATTTCTAAATAAATAAATATCCTATTTATAAATTATATATTAAT
Found at i:4400560 original size:23 final size:25
Alignment explanation
Indices: 4400528--4400576 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 25
4400518 CCTTTTCTGA
*
4400528 TATTTCTAAATAAA-TAA-ATATTT
1 TATTTATAAATAAATTAATATATTT
4400551 TATTTATAAATAAATTAATATATTT
1 TATTTATAAATAAATTAATATATTT
4400576 T
1 T
4400577 TCATAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.57
24 3 0.13
25 7 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTTATAAATAAATTAATATATTT
Found at i:4400582 original size:23 final size:22
Alignment explanation
Indices: 4400530--4400582 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
4400520 TTTTCTGATA
4400530 TTTC-TAAATAAATAAATATTT
1 TTTCATAAATAAATAAATATTT
* *
4400551 TATTTATAAATAAATTAATATATT
1 T-TTCATAAATAAATAAATAT-TT
4400575 TTTCATAA
1 TTTCATAA
4400583 TTATAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 2 0.08
23 20 0.77
24 3 0.12
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTCATAAATAAATAAATATTT
Found at i:4404445 original size:15 final size:15
Alignment explanation
Indices: 4404425--4404456 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4404415 GATCAATATC
4404425 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
4404440 TTTTGCATACATTCA
1 TTTTGCATACATGCA
4404455 TT
1 TT
4404457 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:4408233 original size:9 final size:9
Alignment explanation
Indices: 4408219--4408248 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
4408209 AAATGGCAAT
4408219 CATTTTTTA
1 CATTTTTTA
4408228 CATTTTTTA
1 CATTTTTTA
4408237 CA-TTTTTA
1 CATTTTTTA
4408245 CATT
1 CATT
4408249 CATTTATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63
Consensus pattern (9 bp):
CATTTTTTA
Found at i:4413436 original size:113 final size:113
Alignment explanation
Indices: 4413238--4414247 Score: 1383
Period size: 113 Copynumber: 9.0 Consensus size: 113
4413228 TAGCAAAGAT
* * *
4413238 TCAAATCCATCACTCGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAATAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* ** *
4413303 AGAAGGAAGAAGAAGTTCATAATGAGAATAGCTTGTTCAACCTTTTAC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
*
4413351 TCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
*
4413416 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * * *
4413464 TTGAATTCATCATTTGATGGATCAA-TATTGCC--AGAAAGTTCATAATGAGAAGAACTCATTTG
1 TCAAATCCATCACTTGATGGATCAACT-TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
*
4413526 AAGAAGGAAGAAGAAGTTCATAATGATAAGAATTTGTTCAACCTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
*
4413575 TCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* *
4413640 AGAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * * *
4413688 TTGAATTCATCATTTGATGGATCAA-TATTGCC--AGAAAGTTCATAATGAGAAGAACTCATTTG
1 TCAAATCCATCACTTGATGGATCAACT-TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
4413750 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* ** *
4413799 TCAAATCCATCACTCGATGGATCAACGCTTCAAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
*
4413864 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * * * *
4413912 TTGAATTCATCATTTGATGGATCAA-TATTGCC--AGAAAGTTCATAATTAGAAGAACTCATTTG
1 TCAAATCCATCACTTGATGGATCAACT-TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
**
4413974 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * *
4414023 TCAAATCAATCACTTGATGGATCAACTTTTCTATAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* * *
4414088 AGAAGGAAGAATAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * * * * ** * *
4414136 TTGAATTCATCATTTGATGGATCAGCATTGCCAGA-AGTGTTCATAATGTGAAGAACTCGTCTGA
1 TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* * * *
4414200 AGAAGGAATAGGAAGTTCATAATGAAAAGAACTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
4414248 ATAACTCTAT
Statistics
Matches: 790, Mismatches: 95, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
111 295 0.37
112 70 0.09
113 425 0.54
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
TCAAATCCATCACTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:4413662 original size:224 final size:224
Alignment explanation
Indices: 4413272--4414247 Score: 1682
Period size: 224 Copynumber: 4.4 Consensus size: 224
4413262 TCTTTTCCAG
* * * *
4413272 AGAAAGTTCATAATGAGAATAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAGCTT
1 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
*
4413337 GTTCAACCTTTTACTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
66 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
4413402 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
131 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
4413467 AATTCATCATTTGATGGATCAATATTGCC
196 AATTCATCATTTGATGGATCAATATTGCC
* *
4413496 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGATAAGAATTT
1 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
4413561 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
66 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
*
4413626 AAGAACTCATCTGAAGAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
131 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
4413691 AATTCATCATTTGATGGATCAATATTGCC
196 AATTCATCATTTGATGGATCAATATTGCC
*
4413720 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
1 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
** *
4413785 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACGCTTCAAGAGAAAGTTCATAATGAG
66 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
4413850 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
131 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
4413915 AATTCATCATTTGATGGATCAATATTGCC
196 AATTCATCATTTGATGGATCAATATTGCC
* *
4413944 AGAAAGTTCATAATTAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTT
1 AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
* * * *
4414009 GTTCAACCTTTTGCTCAAATCAATCACTTGATGGATCAACTTTTCTATAGAAAGTTCATAATGAG
66 GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
* *
4414074 AAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTG
131 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
**
4414139 AATTCATCATTTGATGGATCAGCATTGCC
196 AATTCATCATTTGATGGATCAATATTGCC
* * * * * * *
4414168 AGAAGTGTTCATAATGTGAAGAACTCGTCTGAAGAAGGAATAGGAAGTTCATAATGAAAAGAACT
1 AGAA-AGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
4414233 TGTTCAACCTTTTGC
65 TGTTCAACCTTTTGC
4414248 ATAACTCTAT
Statistics
Matches: 716, Mismatches: 35, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
224 650 0.91
225 66 0.09
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (224 bp):
AGAAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
GTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAG
AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG
AATTCATCATTTGATGGATCAATATTGCC
Found at i:4414611 original size:3 final size:3
Alignment explanation
Indices: 4414592--4414663 Score: 78
Period size: 3 Copynumber: 24.7 Consensus size: 3
4414582 TTCATTCGAA
* *
4414592 TAT TAT T-T ATAT T-T TAT TAT TAT TAT TAT TAT AAT TAT AAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
4414636 AAT TAT AAT TA- TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4414664 AATAATTTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 5 0.09
3 51 0.89
4 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:4416092 original size:119 final size:118
Alignment explanation
Indices: 4415955--4416180 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 118
4415945 ATTTTAATCA
* * * *
4415955 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGCAGTCTTGAA-ACAACTGGATGCC
1 TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTT-AAGACAACTAGAAG-C
*
4416017 CATTTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAATTATACATTAAT
64 CATTTTCTGATATTTCTAAATAAATAAATATCCTA-TTTATAAATTATACATTAAT
* * * * *
4416073 TGTTTTAATTATTTATTTATTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAGACAACTAGAAGCC
**
4416138 ATTTTCTGATATTTCTAAATAAATAAATATTTTATTTATAAAT
65 ATTTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAAT
4416181 AAATTAATAT
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 8 0.09
119 29 0.32
120 37 0.40
121 18 0.20
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.45
Consensus pattern (118 bp):
TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAGACAACTAGAAGCCA
TTTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAATTATACATTAAT
Found at i:4416179 original size:23 final size:25
Alignment explanation
Indices: 4416147--4416195 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 25
4416137 CATTTTCTGA
*
4416147 TATTTCTAAATAAA-TAA-ATATTT
1 TATTTATAAATAAATTAATATATTT
4416170 TATTTATAAATAAATTAATATATTT
1 TATTTATAAATAAATTAATATATTT
4416195 T
1 T
4416196 TCTTAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.57
24 3 0.13
25 7 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTTATAAATAAATTAATATATTT
Found at i:4423895 original size:23 final size:23
Alignment explanation
Indices: 4423868--4423935 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
4423858 ACTCAAATCA
4423868 ATACTTCAACATTCAAAACATTT
1 ATACTTCAACATTCAAAACATTT
4423891 ATACTTCAACATTCAAAACATTT
1 ATACTTCAACATTCAAAACATTT
* *
4423914 ATACTTTAACATTCATAACATT
1 ATACTTCAACATTCAAAACATT
4423936 CATAACTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.37
Consensus pattern (23 bp):
ATACTTCAACATTCAAAACATTT
Found at i:4426275 original size:12 final size:12
Alignment explanation
Indices: 4426258--4426290 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4426248 GGTTGAATTT
4426258 GTAGAAATTTCC
1 GTAGAAATTTCC
4426270 GTAGAAATTTCC
1 GTAGAAATTTCC
*
4426282 GTATAAATT
1 GTAGAAATT
4426291 ATTTGTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (12 bp):
GTAGAAATTTCC
Found at i:4433418 original size:76 final size:75
Alignment explanation
Indices: 4433327--4433491 Score: 233
Period size: 76 Copynumber: 2.2 Consensus size: 75
4433317 TTAAACTCAA
*
4433327 ATTTAGGATAATATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGT
1 ATTTAGGATATTATTTT-AACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGT
4433391 ATTTTAATTAAG
64 ATTTTAATTAAG
* * * * *
4433403 TTTTAGGATATTATTTTTATATTTTATCTTTATCTTTGTATTTTAGTTTAAATATGTTTTAGTAT
1 ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
*
4433468 TTTAATTAGG
66 TTTAATTAAG
*
4433478 ATTTAGAATATTAT
1 ATTTAGGATATTAT
4433492 ATTATTTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
75 37 0.47
76 42 0.53
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.57
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
TTTAATTAAG
Found at i:4434150 original size:22 final size:19
Alignment explanation
Indices: 4434112--4434181 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 19
4434102 TAAGTTTCTC
4434112 TTTATCTTAATCTCTTTAATTT
1 TTTAT-TTAAT-TCTTT-ATTT
*
4434134 GTTTATTTAATTACTTTTTTTCT
1 -TTTATTTAATT-C-TTTATT-T
4434157 TTTATTTAATTC-TTATTT
1 TTTATTTAATTCTTTATTT
4434175 TTTATTT
1 TTTATTT
4434182 TAACCGCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
18 8 0.19
19 4 0.10
21 2 0.05
22 19 0.45
23 9 0.21
ACGTcount: A:0.20, C:0.09, G:0.01, T:0.70
Consensus pattern (19 bp):
TTTATTTAATTCTTTATTT
Found at i:4439797 original size:20 final size:20
Alignment explanation
Indices: 4439774--4439811 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4439764 TGTTATATTT
4439774 TTTTAATTTTTTAATTTTCG
1 TTTTAATTTTTTAATTTTCG
*
4439794 TTTTATTTTTTTAATTTT
1 TTTTAATTTTTTAATTTT
4439812 TTTAGCGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTAATTTTTTAATTTTCG
Found at i:4439801 original size:28 final size:27
Alignment explanation
Indices: 4439760--4439813 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
4439750 GAGGCAACCC
4439760 ATTTTGTTATATTTTTTTAATTTTTTA
1 ATTTTGTTATATTTTTTTAATTTTTTA
*
4439787 ATTTTCGTTTTATTTTTTTAATTTTTT
1 ATTTT-GTTATATTTTTTTAATTTTTT
4439814 TAGCGAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.76
Consensus pattern (27 bp):
ATTTTGTTATATTTTTTTAATTTTTTA
Found at i:4440897 original size:32 final size:32
Alignment explanation
Indices: 4440855--4440926 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
4440845 TCAATGTTTA
4440855 AAAAAAAACAAGTTGTTCACTGTATCGAACAG
1 AAAAAAAACAAGTTGTTCACTGTATCGAACAG
*
4440887 CAAAAAAACAAGTTGTTCACTGTATCGAACAG
1 AAAAAAAACAAGTTGTTCACTGTATCGAACAG
4440919 AAAAAAAA
1 AAAAAAAA
4440927 ACCTTTGTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.19
Consensus pattern (32 bp):
AAAAAAAACAAGTTGTTCACTGTATCGAACAG
Found at i:4441797 original size:76 final size:75
Alignment explanation
Indices: 4441706--4441870 Score: 242
Period size: 76 Copynumber: 2.2 Consensus size: 75
4441696 TTAAACTCAA
*
4441706 ATTTAGGATAATATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGT
1 ATTTAGGATATTATTTT-AACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGT
4441770 ATTTTAATTAAG
64 ATTTTAATTAAG
* * * *
4441782 TTTTAGGATATTATTTTTATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
1 ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
*
4441847 TTTAATTAGG
66 TTTAATTAAG
*
4441857 ATTTAGAATATTAT
1 ATTTAGGATATTAT
4441871 ATTATTTTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
75 37 0.46
76 43 0.54
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.56
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
TTTAATTAAG
Found at i:4441856 original size:19 final size:19
Alignment explanation
Indices: 4441828--4441890 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
4441818 TGTATTTTAG
*
4441828 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
* *
4441847 TTTAATTAGGATTTAGAAT
1 TTTAATTAGGTTTTAGTAT
* **
4441866 ATTATATTATTTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
4441887 TTTA
1 TTTA
4441891 GTTTAAATAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 8 0.24
21 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:4442542 original size:21 final size:22
Alignment explanation
Indices: 4442517--4442557 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4442507 CTTTAATTTG
4442517 TTTATTTAATTATT-TTTTTCT
1 TTTATTTAATTATTATTTTTCT
*
4442538 TTTATTTAATTCTTATTTTT
1 TTTATTTAATTATTATTTTT
4442558 TATTTTAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTATTTAATTATTATTTTTCT
Found at i:4446848 original size:24 final size:23
Alignment explanation
Indices: 4446783--4446850 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
4446773 TACTACGGTG
* *
4446783 CAATTCTACCTGGCACTTCGGTA
1 CAATTCTACGTGGCACTTCGGGA
* * *
4446806 CATTTCTATGCGGTC-CTTCGGGA
1 CAATTCTACGTGG-CACTTCGGGA
4446829 CAAATTCTACGTGGCACTTCGG
1 C-AATTCTACGTGGCACTTCGG
4446851 TGTAAATTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
23 18 0.53
24 16 0.47
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (23 bp):
CAATTCTACGTGGCACTTCGGGA
Found at i:4447480 original size:22 final size:22
Alignment explanation
Indices: 4447455--4447508 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
4447445 TGGAAAATTT
*
4447455 TTACTGTTCATTGTACTGTTCA
1 TTACTGTTCATGGTACTGTTCA
*
4447477 TTACTGTTCATGGTATTGTTCA
1 TTACTGTTCATGGTACTGTTCA
4447499 TTACTGTTCA
1 TTACTGTTCA
4447509 CAGTATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (22 bp):
TTACTGTTCATGGTACTGTTCA
Found at i:4447483 original size:10 final size:10
Alignment explanation
Indices: 4447455--4447508 Score: 63
Period size: 10 Copynumber: 5.0 Consensus size: 10
4447445 TGGAAAATTT
4447455 TTACTGTTCA
1 TTACTGTTCA
4447465 TTGTACTGTTCA
1 -T-TACTGTTCA
4447477 TTACTGTTCA
1 TTACTGTTCA
*
4447487 TGGTATTGTTCA
1 T--TACTGTTCA
4447499 TTACTGTTCA
1 TTACTGTTCA
4447509 CAGTATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 18 0.47
11 2 0.05
12 18 0.47
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (10 bp):
TTACTGTTCA
Found at i:4447514 original size:22 final size:22
Alignment explanation
Indices: 4447455--4447521 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
4447445 TGGAAAATTT
* *
4447455 TTACTGTTCATTGTACTGTTCA
1 TTACTGTTCATAGTATTGTTCA
*
4447477 TTACTGTTCATGGTATTGTTCA
1 TTACTGTTCATAGTATTGTTCA
* *
4447499 TTACTGTTCACAGTATTATTCA
1 TTACTGTTCATAGTATTGTTCA
4447521 T
1 T
4447522 ATCGTATATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.49
Consensus pattern (22 bp):
TTACTGTTCATAGTATTGTTCA
Found at i:4457168 original size:15 final size:16
Alignment explanation
Indices: 4457145--4457174 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4457135 TCGAAAGTTA
4457145 TTTCGTCAAAGAAGAT
1 TTTCGTCAAAGAAGAT
4457161 TTTC-TCAAAGAAGA
1 TTTCGTCAAAGAAGA
4457175 ATGTACGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (16 bp):
TTTCGTCAAAGAAGAT
Found at i:4459913 original size:31 final size:31
Alignment explanation
Indices: 4459878--4459936 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
4459868 TAAAGTTTGT
4459878 AAAAGGTTAATGAACAAAAAGT-TAATTTTTC
1 AAAAGGTTAATG-ACAAAAAGTGTAATTTTTC
* *
4459909 AAAAGTTTAATGACCAAAAGTGTAATTT
1 AAAAGGTTAATGACAAAAAGTGTAATTT
4459937 CAAAAAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.32
Consensus pattern (31 bp):
AAAAGGTTAATGACAAAAAGTGTAATTTTTC
Found at i:4460264 original size:19 final size:19
Alignment explanation
Indices: 4460242--4460335 Score: 54
Period size: 18 Copynumber: 4.9 Consensus size: 19
4460232 GTTTAAATAG
4460242 GTTTTAGTATTTTAATTAA
1 GTTTTAGTATTTTAATTAA
*
4460261 GTTTTAGGATATTATT-TTTATA
1 GTTTTA-G-TATT-TTAATTA-A
* *
4460283 -TTTTA-TATTTGT-TTTAG
1 GTTTTAGTATTT-TAATTAA
* * *
4460300 GTATTA-TAATTTAAATAA
1 GTTTTAGTATTTTAATTAA
4460318 GTTTTAGTATTTTAATTA
1 GTTTTAGTATTTTAATTA
4460336 GGATTTAAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
17 2 0.04
18 24 0.42
19 15 0.26
20 1 0.02
21 12 0.21
22 3 0.05
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.59
Consensus pattern (19 bp):
GTTTTAGTATTTTAATTAA
Found at i:4460286 original size:32 final size:32
Alignment explanation
Indices: 4460243--4460306 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
4460233 TTTAAATAGG
4460243 TTTTAGTATTTTA-ATTAAGTTTTAGGATATTAT
1 TTTTAGTATTTTATATT-AGTTTTAGG-TATTAT
*
4460276 TTTTA-TATTTTATATTTGTTTTAGGTATTAT
1 TTTTAGTATTTTATATTAGTTTTAGGTATTAT
4460307 AATTTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 6 0.21
32 15 0.52
33 8 0.28
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (32 bp):
TTTTAGTATTTTATATTAGTTTTAGGTATTAT
Found at i:4460352 original size:63 final size:63
Alignment explanation
Indices: 4460285--4460406 Score: 185
Period size: 63 Copynumber: 1.9 Consensus size: 63
4460275 TTTTTATATT
4460285 TTATATT-TGTTTTAGGTATTATAATTTAAATAAGTTTT-AGTATTTTAATTAGGATTTAAAATA
1 TTATATTATGTTTTAGGTATT-TAATTTAAAT-AGTTTTAAGTATTTTAATTAGGATTTAAAATA
* * *
4460348 TTATATTATTTTTTAGGTATTTAGTTTAAATAGTTTTAAGTGTTTTAATTAGGATTTAA
1 TTATATTATGTTTTAGGTATTTAATTTAAATAGTTTTAAGTATTTTAATTAGGATTTAA
4460407 GATGTTTTAG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
62 6 0.11
63 36 0.67
64 12 0.22
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (63 bp):
TTATATTATGTTTTAGGTATTTAATTTAAATAGTTTTAAGTATTTTAATTAGGATTTAAAATA
Found at i:4461027 original size:19 final size:19
Alignment explanation
Indices: 4460982--4461028 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
4460972 AATATCTTTA
*
4460982 ATTTATTTATTTAATTATT
1 ATTTTTTTATTTAATTATT
*
4461001 -TTTCTTTTATTTAATTCTT
1 ATTT-TTTTATTTAATTATT
4461020 ATTTTTTTA
1 ATTTTTTTA
4461029 AAAATAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 18 0.75
20 3 0.12
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
ATTTTTTTATTTAATTATT
Found at i:4461111 original size:20 final size:20
Alignment explanation
Indices: 4461072--4461117 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
4461062 TTACTATTAA
*
4461072 TATTTATTATTATATTATTT
1 TATTTTTTATTATATTATTT
4461092 TACTTTTTTATTAT-TTATTT
1 TA-TTTTTTATTATATTATTT
4461112 TATTTT
1 TATTTT
4461118 AATATATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 10 0.42
21 10 0.42
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TATTTTTTATTATATTATTT
Found at i:4466074 original size:5 final size:5
Alignment explanation
Indices: 4466021--4466091 Score: 56
Period size: 5 Copynumber: 13.8 Consensus size: 5
4466011 ATATTTTTGT
* * **
4466021 TTTTAA TTTCA TTTTA TTTTAA TTTTA -TTTA TTTCA TTCCA -TTTA TTTTA
1 TTTT-A TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
4466071 TTTTTAA TTTTA TTTTA TTTT
1 -TTTT-A TTTTA TTTTA TTTT
4466092 TCTCTGAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
4 6 0.11
5 31 0.57
6 16 0.30
7 1 0.02
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:4467848 original size:19 final size:19
Alignment explanation
Indices: 4467734--4467882 Score: 79
Period size: 19 Copynumber: 7.4 Consensus size: 19
4467724 TTTTGTATTT
*
4467734 TATTTTAAATAGGTTTTAG
1 TATTTTAATTAGGTTTTAG
*
4467753 TATTTTAATTAAGTTTTAGGG
1 TATTTTAATTAGGTTTTA--G
* **
4467774 TATTATT-TTTATATTTTA-
1 TATT-TTAATTAGGTTTTAG
*
4467792 TATTTTATATT-TGTTTTAGG
1 TATTTTA-ATTAGGTTTTA-G
4467812 TATTTTAATTTAAATAGGTTTTAG
1 TATTTTAA--T---TAGGTTTTAG
*
4467836 TATTTTAATTAGGATTTAG
1 TATTTTAATTAGGTTTTAG
* **
4467855 AATTTTATATTATTTTTTAAG
1 TATTTTA-ATTAGGTTTT-AG
4467876 TATTTTA
1 TATTTTA
4467883 GTTTAAATAG
Statistics
Matches: 101, Mismatches: 14, Indels: 28
0.71 0.10 0.20
Matches are distributed among these distances:
17 2 0.02
18 10 0.10
19 34 0.34
20 14 0.14
21 22 0.22
22 3 0.03
24 10 0.10
25 6 0.06
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (19 bp):
TATTTTAATTAGGTTTTAG
Found at i:4467873 original size:64 final size:63
Alignment explanation
Indices: 4467793--4467917 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 63
4467783 TATATTTTAT
*
4467793 ATTTTATATTTGTTTTAGGTATTTTAATTTAAATAGGTTTT-AGTATTTTAATTAGGATTTAGA
1 ATTTTATATTTGTTTTAAGTATTTTAATTTAAATA-GTTTTAAGTATTTTAATTAGGATTTAGA
* * *
4467856 ATTTTATATTATTTTTTAAGTATTTTAGTTTAAATAGTTTTAAGTGTTTTAATTAGGATTTA
1 ATTTTATATT-TGTTTTAAGTATTTTAATTTAAATAGTTTTAAGTATTTTAATTAGGATTTA
4467918 AGATGTTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
63 15 0.27
64 41 0.73
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (63 bp):
ATTTTATATTTGTTTTAAGTATTTTAATTTAAATAGTTTTAAGTATTTTAATTAGGATTTAGA
Found at i:4468555 original size:19 final size:18
Alignment explanation
Indices: 4468504--4468552 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
4468494 AATCTCTTTA
4468504 ATTTATTTATTTAATTATT
1 ATTT-TTTATTTAATTATT
* *
4468523 TTTCTTTTATTTAATTCTT
1 ATT-TTTTATTTAATTATT
4468542 ATTTTTTATTT
1 ATTTTTTATTT
4468553 TAAAAAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.31
19 17 0.65
20 1 0.04
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTTTATTTAATTATT
Found at i:4472556 original size:3 final size:3
Alignment explanation
Indices: 4472542--4472596 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
4472532 CAAGATTGTT
* * * *
4472542 ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA AGCTA ATA GTG ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA
4472589 ATA ATA AT
1 ATA ATA AT
4472597 GTTATTGGCC
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
3 39 0.93
5 3 0.07
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4478045 original size:2 final size:2
Alignment explanation
Indices: 4478038--4478106 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
4478028 TGAGTGATGT
4478038 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4478080 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4478107 CTCTTAGAAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4481874 original size:2 final size:2
Alignment explanation
Indices: 4481867--4481927 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
4481857 TGAGTGATGT
4481867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4481909 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
4481928 CTTAGAAGTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4488471 original size:18 final size:20
Alignment explanation
Indices: 4488447--4488494 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 20
4488437 TTTATTATAT
4488447 TTAGTATTAAATAAAT-TTA
1 TTAGTATTAAATAAATATTA
4488466 -TAGTA-TAAATAAATATTA
1 TTAGTATTAAATAAATATTA
4488484 TTA-TATTAAAT
1 TTAGTATTAAAT
4488495 TATATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.35
18 10 0.38
19 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
TTAGTATTAAATAAATATTA
Found at i:4488524 original size:23 final size:24
Alignment explanation
Indices: 4488480--4488525 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
4488470 ATAAATAAAT
*
4488480 ATTATTATATTAAATTATATTTTA
1 ATTATTATATTAAATTAGATTTTA
*
4488504 ATTATTA-ATTAAATTGGATTTT
1 ATTATTATATTAAATTAGATTTT
4488526 TAAATCAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
ATTATTATATTAAATTAGATTTTA
Found at i:4493170 original size:139 final size:138
Alignment explanation
Indices: 4492962--4493527 Score: 502
Period size: 139 Copynumber: 4.1 Consensus size: 138
4492952 TCAATCTGGA
* * * * * * * * *
4492962 GATAATTTGGTGATAACACGGTTCCTACGTGATGATGAGGT-TTGATTGTCTAAGGATGACAATG
1 GATAATTTGGAGACAACACAGTT-CTACGTGATGAGGAAGTCTGGA-TGTCTGAGGATGACACTA
* *
4493026 CTCCTTCACGTTGAGAAGATCTGGTCGATGGACGACATTGTTCCTACGTGATGAGGATGCCTGGT
64 CTCCTTCACGTTGAGGAGATCTGGTCGATGGACGACATTGTTCCTACGTGATGAGGATGCCTAGT
*
4493091 TGTCTTTAGG
129 CGTCTTTAGG
* * *
4493101 GATACTTTGGAGACAACACAGTTACTACGTGATGAGGAAGTATGGATGTCTGAGGGTGACACTAC
1 GATAATTTGGAGACAACACAGTT-CTACGTGATGAGGAAGTCTGGATGTCTGAGGATGACACTAC
* * * * * * ** *
4493166 TCCTTTACATTGAGGAGATCTGGTTGGTGGACGACATTGTTCCTACGTAATGAGGACGTTTAGAC
65 TCCTTCACGTTGAGGAGATCTGGTCGATGGACGACATTGTTCCTACGTGATGAGGATGCCTAGTC
*
4493231 GTCTTTAGT
130 GTCTTTAGG
* * * * *
4493240 GATAATTTGGAGACAACAC-GATTCTTACGTGATGAGGAAGTCTGAATGTCTGAGGGTGAGATTG
1 GATAATTTGGAGACAACACAG-TTC-TACGTGATGAGGAAGTCTGGATGTCTGAGGATGACACTA
* * * * *
4493304 CTCTTTCGCGTTGAGGAGATCTGGTC-AGTCGACGGCATTGTTTCTACGTGATGAGG--GCATCT
64 CTCCTTCACGTTGAGGAGATCTGGTCGA-TGGACGACATTGTTCCTACGTGATGAGGATGC--CT
* * *
4493366 AGCCATTTTTAGG
126 AGTCGTCTTTAGG
* * * * * *
4493379 GATAATTAGGACACAATACAGTTC--CATGATGAGGAAGTCT-GAT-TACCTGAAGATGAAACTA
1 GATAATTTGGAGACAACACAGTTCTACGTGATGAGGAAGTCTGGATGT--CTGAGGATGACACTA
* * * * * * **
4493440 CTCCTTCGCGTTGAGGTGATCTGGTCGGTGGACGACATTGTTCTTACGTTATAAGGATATCTAGT
64 CTCCTTCACGTTGAGGAGATCTGGTCGATGGACGACATTGTTCCTACGTGATGAGGATGCCTAGT
4493505 CGTCTTTAGG
129 CGTCTTTAGG
*
4493515 GATAAATTGGAGA
1 GATAATTTGGAGA
4493528 TAATAATCTC
Statistics
Matches: 341, Mismatches: 74, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
134 1 0.00
135 2 0.01
136 93 0.27
137 1 0.00
138 2 0.01
139 238 0.70
140 4 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (138 bp):
GATAATTTGGAGACAACACAGTTCTACGTGATGAGGAAGTCTGGATGTCTGAGGATGACACTACT
CCTTCACGTTGAGGAGATCTGGTCGATGGACGACATTGTTCCTACGTGATGAGGATGCCTAGTCG
TCTTTAGG
Found at i:4493633 original size:30 final size:30
Alignment explanation
Indices: 4493590--4493834 Score: 109
Period size: 30 Copynumber: 7.5 Consensus size: 30
4493580 GATAAAACTT
*
4493590 TGTTTCGAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
* ** **
4493620 TGTTTCAATAGAAACTGTCTCAAGCGAGACAAAATT-
1 TGTTTCAAGAGAAACAATCTCAA---AG----GTTTA
4493656 TGTTTCGAA-AGAAACAATCTCAAAGGTTTA
1 TGTTTC-AAGAGAAACAATCTCAAAGGTTTA
* **
4493686 TGTTTCAAGAGAAACTATCTCAAGCGAGACAAAACTT-
1 TGTTTCAAGAGAAACAATCTCAA---AG-----GTTTA
* *
4493723 TGTTTCGAGAGAAACAATGTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
* ** * *
4493753 TGTTTCATGAGAAACTGTCTCAAGCGAGACATAATTT
1 TGTTTCAAGAGAAACAATCTCAA---AG--GT--TTA
*
4493790 TGTTTCGAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
4493820 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
4493835 TGTCTAAAGT
Statistics
Matches: 157, Mismatches: 32, Indels: 52
0.65 0.13 0.22
Matches are distributed among these distances:
29 6 0.04
30 72 0.46
32 1 0.01
33 8 0.05
34 4 0.03
35 1 0.01
36 18 0.11
37 45 0.29
38 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTTA
Found at i:4493756 original size:133 final size:134
Alignment explanation
Indices: 4493553--4493853 Score: 516
Period size: 133 Copynumber: 2.3 Consensus size: 134
4493543 AGATTAATTT
*
4493553 TGTTTCAAGAGAAACTATCTCAAGTGAGATAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTATCTCAAGTGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
4493618 TATGTTTCAAT-AGAAACTGTCTCAAGCGAGACA-AAATTTGTTTCGAAAGAAACAATCTCAAAG
66 TATGTTTC-ATGAGAAACTGTCTCAAGCGAGACATAAATTTGTTTCGAAAGAAACAATCTCAAAG
4493681 GTTTA
130 GTTTA
* *
4493686 TGTTTCAAGAGAAACTATCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATGTCAAAGGTT
1 TGTTTCAAGAGAAACTATCTCAAGTGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
* *
4493751 TATGTTTCATGAGAAACTGTCTCAAGCGAGACATAATTTTGTTTCGAGAGAAACAATCTCAAAGG
66 TATGTTTCATGAGAAACTGTCTCAAGCGAGACATAAATTTGTTTCGAAAGAAACAATCTCAAAGG
4493816 TTTA
131 TTTA
* *
4493820 TGTTTCAAGAGAAACTGTCTAAAGTGAGACAAAA
1 TGTTTCAAGAGAAACTATCTCAAGTGAGACAAAA
4493854 TTTAATTTTA
Statistics
Matches: 158, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
132 2 0.01
133 92 0.58
134 64 0.41
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (134 bp):
TGTTTCAAGAGAAACTATCTCAAGTGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
TATGTTTCATGAGAAACTGTCTCAAGCGAGACATAAATTTGTTTCGAAAGAAACAATCTCAAAGG
TTTA
Found at i:4493856 original size:67 final size:67
Alignment explanation
Indices: 4493553--4493853 Score: 487
Period size: 67 Copynumber: 4.5 Consensus size: 67
4493543 AGATTAATTT
* * *
4493553 TGTTTCAAGAGAAACTATCTCAAGTGAGATAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
4493618 TA
66 TA
* *
4493620 TGTTTCAATAGAAACTGTCTCAAGCGAGACAAAA-TTTGTTTCGAAAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
4493684 TA
66 TA
* *
4493686 TGTTTCAAGAGAAACTATCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATGTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
4493751 TA
66 TA
* * *
4493753 TGTTTCATGAGAAACTGTCTCAAGCGAGACATAATTTTGTTTCGAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
4493818 TA
66 TA
* *
4493820 TGTTTCAAGAGAAACTGTCTAAAGTGAGACAAAA
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAA
4493854 TTTAATTTTA
Statistics
Matches: 215, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
66 63 0.29
67 152 0.71
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (67 bp):
TGTTTCAAGAGAAACTGTCTCAAGCGAGACAAAACTTTGTTTCGAGAGAAACAATCTCAAAGGTT
TA
Found at i:4496760 original size:29 final size:29
Alignment explanation
Indices: 4496728--4496814 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
4496718 ACTTGATCGA
4496728 TTTTCTTTCATTCTT-CTT-TTTTCTCTTTG
1 TTTTCTTTC-TT-TTGCTTCTTTTCTCTTTG
*
4496757 TTTTTTTTCTTTTGCTTCTTTTCTC-TT-
1 TTTTCTTTCTTTTGCTTCTTTTCTCTTTG
* * *
4496784 TTCTCTTTCTTTTTCTTTTCTTTTTTCTTTG
1 TTTTCTTTCTTTTGC--TTCTTTTCTCTTTG
4496815 ATTTGTTCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
27 14 0.30
28 7 0.15
29 24 0.51
30 2 0.04
ACGTcount: A:0.01, C:0.20, G:0.03, T:0.76
Consensus pattern (29 bp):
TTTTCTTTCTTTTGCTTCTTTTCTCTTTG
Found at i:4496764 original size:15 final size:15
Alignment explanation
Indices: 4496744--4496809 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
4496734 TTCATTCTTC
*
4496744 TTTTTTCTCTTTGTT
1 TTTTTTCTCTTTGCT
4496759 TTTTTTCT-TTTGCT
1 TTTTTTCTCTTTGCT
* *
4496773 TCTTTTCTCTTTTCT
1 TTTTTTCTCTTTGCT
* *
4496788 CTTTCTTTTTCTTTTCT
1 -TTT-TTTCTCTTTGCT
4496805 TTTTT
1 TTTTT
4496810 CTTTGATTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.28
15 15 0.35
16 5 0.12
17 11 0.26
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTCTCTTTGCT
Found at i:4496767 original size:22 final size:21
Alignment explanation
Indices: 4496741--4496813 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
4496731 TCTTTCATTC
*
4496741 TTCTTTTTTCTCTTTGTTTTTT
1 TTCTTTTTTCTCTTT-TCTTTT
4496763 TTCTTTTGCTTCT-TTTCTCTTTT
1 TTCTTTT--TTCTCTTT-TCTTTT
* *
4496786 CTCTTTCTTTTTCTTTTCTTTT
1 TTCTTT-TTTCTCTTTTCTTTT
4496808 TTCTTT
1 TTCTTT
4496814 GATTTGTTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 21 0.50
23 16 0.38
24 5 0.12
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (21 bp):
TTCTTTTTTCTCTTTTCTTTT
Found at i:4496769 original size:7 final size:7
Alignment explanation
Indices: 4496741--4496813 Score: 60
Period size: 7 Copynumber: 9.9 Consensus size: 7
4496731 TCTTTCATTC
4496741 TTCTTTT
1 TTCTTTT
4496748 TTCTCTTT
1 TTCT-TTT
4496756 GTT-TTTT
1 -TTCTTTT
4496763 TTCTTTT
1 TTCTTTT
4496770 GCTTCTTTT
1 --TTCTTTT
*
4496779 CTCTTTT
1 TTCTTTT
*
4496786 CTCTTTCT
1 TTCTTT-T
4496794 TT-TTCTT
1 TTCTT-TT
4496801 TTCTTTT
1 TTCTTTT
4496808 TTCTTT
1 TTCTTT
4496814 GATTTGTTCT
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
6 2 0.04
7 36 0.64
8 9 0.16
9 9 0.16
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (7 bp):
TTCTTTT
Found at i:4496812 original size:36 final size:35
Alignment explanation
Indices: 4496741--4496813 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 35
4496731 TCTTTCATTC
* *
4496741 TTCTTTTTTCTCTTTGTTTTTTTTCTTTTGCTTCTT
1 TTCTCTTTTCTCTTTCTTTTTTTTCTTTT-CTTCTT
4496777 TTCTCTTTTCTCTTTCTTTTTCTTTTCTTTT-TTCTT
1 TTCTCTTTTCTCTTTC-TTTT-TTTTCTTTTCTTCTT
4496813 T
1 T
4496814 GATTTGTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 20 0.61
37 4 0.12
38 9 0.27
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (35 bp):
TTCTCTTTTCTCTTTCTTTTTTTTCTTTTCTTCTT
Found at i:4496823 original size:24 final size:25
Alignment explanation
Indices: 4496767--4496825 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
4496757 TTTTTTTTCT
*
4496767 TTTGCTTCTTTTCTCTTTTCTCTTTC
1 TTTG-TTCTTTTCTCTTTTCTCTTTA
4496793 TTT-TTCTTTTCT-TTTT-TCTTTGA
1 TTTGTTCTTTTCTCTTTTCTCTTT-A
4496816 TTTGTTCTTT
1 TTTGTTCTTT
4496826 GCACTTTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 7 0.23
24 15 0.50
26 3 0.10
ACGTcount: A:0.02, C:0.19, G:0.05, T:0.75
Consensus pattern (25 bp):
TTTGTTCTTTTCTCTTTTCTCTTTA
Found at i:4502331 original size:23 final size:22
Alignment explanation
Indices: 4502260--4502341 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
4502250 ACACTTAACA
4502260 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCA-CCC-TTGAAT
* * *
4502284 GTGCATCGATACA-CCATGAAG
1 GTGCATCGATGCACCCTTGAAT
*
4502305 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCAC-CCTTGAAT
*
4502328 GTGCATTGATGCAC
1 GTGCATCGATGCAC
4502342 AAGGTCATGC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 15 0.32
22 2 0.04
23 18 0.38
24 12 0.26
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (22 bp):
GTGCATCGATGCACCCTTGAAT
Found at i:4505108 original size:64 final size:65
Alignment explanation
Indices: 4505005--4505126 Score: 178
Period size: 64 Copynumber: 1.9 Consensus size: 65
4504995 TGCATTTCAC
4505005 GCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCAGCCAT
1 GCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCAGCCAT
* **
4505070 GCATCGATGCACTCA-AGCTATTT-TG-AAACATCGAATGCATTTTATTTATCGATGCAC
1 GCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCATTTGATGCATCGATGCAC
4505127 TTTTAGTGCA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
64 31 0.60
65 18 0.35
66 3 0.06
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (65 bp):
GCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCAGCCAT
Found at i:4506962 original size:13 final size:13
Alignment explanation
Indices: 4506944--4506977 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
4506934 TTTACCCTAT
4506944 TTTTCACCGTCCA
1 TTTTCACCGTCCA
4506957 TTTTCACCGTCCA
1 TTTTCACCGTCCA
4506970 TTTTCACC
1 TTTTCACC
4506978 AATCACCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.15, C:0.38, G:0.06, T:0.41
Consensus pattern (13 bp):
TTTTCACCGTCCA
Found at i:4509642 original size:15 final size:16
Alignment explanation
Indices: 4509609--4509656 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
4509599 GCATTAATTC
* *
4509609 ATAAATAGATTTGTTT
1 ATAAATACATTTTTTT
4509625 ATAAATAC-TTTTTTT
1 ATAAATACATTTTTTT
* *
4509640 ATATATTCATTTTTTT
1 ATAAATACATTTTTTT
4509656 A
1 A
4509657 ATTATTTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (16 bp):
ATAAATACATTTTTTT
Found at i:4513630 original size:51 final size:51
Alignment explanation
Indices: 4513572--4513694 Score: 246
Period size: 51 Copynumber: 2.4 Consensus size: 51
4513562 ATCTTAACTC
4513572 TAATTCCTAATAAAATAATAATAACTAAAGATAATACTTTTAACCCAACCT
1 TAATTCCTAATAAAATAATAATAACTAAAGATAATACTTTTAACCCAACCT
4513623 TAATTCCTAATAAAATAATAATAACTAAAGATAATACTTTTAACCCAACCT
1 TAATTCCTAATAAAATAATAATAACTAAAGATAATACTTTTAACCCAACCT
4513674 TAATTCCTAATAAAATAATAA
1 TAATTCCTAATAAAATAATAA
4513695 ATCTAATCCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (51 bp):
TAATTCCTAATAAAATAATAATAACTAAAGATAATACTTTTAACCCAACCT
Found at i:4520049 original size:21 final size:21
Alignment explanation
Indices: 4520021--4520100 Score: 99
Period size: 21 Copynumber: 3.7 Consensus size: 21
4520011 TTTACGTAAG
4520021 AGTACTTTGTGTACTTGGAGT
1 AGTACTTTGTGTACTTGGAGT
*
4520042 AGCACTTTGTGTACTATGGAAAG-
1 AGTACTTTGTGTACT-TGG--AGT
*
4520065 AGTACTTTGTGTACTTGTAGT
1 AGTACTTTGTGTACTTGGAGT
*
4520086 AATACTTTGTGTACT
1 AGTACTTTGTGTACT
4520101 ATGGCACTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.04
21 28 0.55
22 5 0.10
23 14 0.27
24 2 0.04
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.41
Consensus pattern (21 bp):
AGTACTTTGTGTACTTGGAGT
Found at i:4520081 original size:44 final size:44
Alignment explanation
Indices: 4520018--4520104 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
4520008 GCATTTACGT
*
4520018 AAGAGTACTTTGTGTACTTGGAGTAGCACTTTGTGTACTATGGA
1 AAGAGTACTTTGTGTACTTGGAGTAACACTTTGTGTACTATGGA
* *
4520062 AAGAGTACTTTGTGTACTTGTAGTAATACTTTGTGTACTATGG
1 AAGAGTACTTTGTGTACTTGGAGTAACACTTTGTGTACTATGG
4520105 CACTTTGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.39
Consensus pattern (44 bp):
AAGAGTACTTTGTGTACTTGGAGTAACACTTTGTGTACTATGGA
Found at i:4525993 original size:59 final size:59
Alignment explanation
Indices: 4525894--4526022 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 59
4525884 CAGCAGGCTG
** * * *
4525894 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTGGGCACAACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACAACCTTATATGT
* ** * * *
4525953 CATATTCGGGACTGTACTTAAGGATACCTAGTACAGATGGTGGATACGACCTTATATGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACAACCTTATATGT
*
4526012 CATACTCGGGA
1 CATATTCGGGA
4526023 TTGCATTACG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACAACCTTATATGT
Found at i:4526580 original size:11 final size:11
Alignment explanation
Indices: 4526555--4526594 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
4526545 CTGAAATTAT
4526555 TGTAGCAGTTAC
1 TGTAGCAG-TAC
4526567 TGTAGCAGTAC
1 TGTAGCAGTAC
4526578 TGTAGCAGTAC
1 TGTAGCAGTAC
4526589 TGTAGC
1 TGTAGC
4526595 GTATCAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (11 bp):
TGTAGCAGTAC
Found at i:4529961 original size:21 final size:21
Alignment explanation
Indices: 4529936--4530015 Score: 124
Period size: 21 Copynumber: 3.7 Consensus size: 21
4529926 TTTTCATAAG
4529936 AGTACTTTGTGTACTTGGAGT
1 AGTACTTTGTGTACTTGGAGT
*
4529957 AGTACTTTGTGTACTATGGAAAT
1 AGTACTTTGTGTACT-TGG-AGT
*
4529980 AGTACTTTGTGTACTTGTAGT
1 AGTACTTTGTGTACTTGGAGT
4530001 AGTACTTTGTGTACT
1 AGTACTTTGTGTACT
4530016 ATGGCACTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
21 32 0.59
22 5 0.09
23 17 0.31
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.44
Consensus pattern (21 bp):
AGTACTTTGTGTACTTGGAGT
Found at i:4530002 original size:44 final size:44
Alignment explanation
Indices: 4529936--4530019 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
4529926 TTTTCATAAG
4529936 AGTACTTTGTGTACTTGGAGTAGTACTTTGTGTACTATGGAAAT
1 AGTACTTTGTGTACTTGGAGTAGTACTTTGTGTACTATGGAAAT
*
4529980 AGTACTTTGTGTACTTGTAGTAGTACTTTGTGTACTATGG
1 AGTACTTTGTGTACTTGGAGTAGTACTTTGTGTACTATGG
4530020 CACTTTGTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.43
Consensus pattern (44 bp):
AGTACTTTGTGTACTTGGAGTAGTACTTTGTGTACTATGGAAAT
Found at i:4532509 original size:22 final size:23
Alignment explanation
Indices: 4532478--4532550 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 23
4532468 TTAACATAAA
4532478 TTATTATAATTTTATAAATATATT
1 TTATT-TAATTTTATAAATATATT
4532502 TT-TTTAATTTTGA-AAATATTTATAT
1 TTATTTAATTTT-ATAAATA--TAT-T
* *
4532527 TTATTTATTTTTATAACTATATT
1 TTATTTAATTTTATAAATATATT
4532550 T
1 T
4532551 CATAAAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 8 0.20
25 4 0.10
26 12 0.29
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTTAATTTTATAAATATATT
Found at i:4533105 original size:41 final size:42
Alignment explanation
Indices: 4533060--4533148 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 42
4533050 AAATTCACGT
* *
4533060 TGCGATTTTCCTAAATCGCAATGC-AAATACGTAAATCGCAA
1 TGCGATTTACCTAAATCGCAATGCGAAATACGAAAATCGCAA
* * *
4533101 TGCGA-TTACGTAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGATTTACCTAAATCGCAATGCGAAATACGAAAATCGCAA
4533142 TGCGATT
1 TGCGATT
4533149 ACGTACGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 16 0.39
41 24 0.59
42 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (42 bp):
TGCGATTTACCTAAATCGCAATGCGAAATACGAAAATCGCAA
Done.