Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5962497
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 24 of 30
Found at i:4533136 original size:21 final size:21
Alignment explanation
Indices: 4533071--4533153 Score: 118
Period size: 20 Copynumber: 4.1 Consensus size: 21
4533061 GCGATTTTCC
*
4533071 TAAATCGCAATGC-AAATACG
1 TAAATCGCAATGCGAATTACG
4533091 TAAATCGCAATGCG-ATTACG
1 TAAATCGCAATGCGAATTACG
*
4533111 TAAATCGCAATGCGAATTAGG
1 TAAATCGCAATGCGAATTACG
*
4533132 AAAATCGCAATGCG-ATTACG
1 TAAATCGCAATGCGAATTACG
4533152 TA
1 TA
4533154 CGTATTCGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
20 38 0.68
21 18 0.32
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (21 bp):
TAAATCGCAATGCGAATTACG
Found at i:4533149 original size:41 final size:40
Alignment explanation
Indices: 4533071--4533153 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 40
4533061 GCGATTTTCC
*
4533071 TAAATCGCAATGCAAATACGTAAATCGCAATGCGATTACG
1 TAAATCGCAATGCAAATACGAAAATCGCAATGCGATTACG
* *
4533111 TAAATCGCAATGCGAATTAGGAAAATCGCAATGCGATTACG
1 TAAATCGCAATGC-AAATACGAAAATCGCAATGCGATTACG
4533152 TA
1 TA
4533154 CGTATTCGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 13 0.33
41 26 0.67
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (40 bp):
TAAATCGCAATGCAAATACGAAAATCGCAATGCGATTACG
Found at i:4533211 original size:20 final size:20
Alignment explanation
Indices: 4533087--4533264 Score: 135
Period size: 20 Copynumber: 8.6 Consensus size: 20
4533077 GCAATGCAAA
*
4533087 TACGTAAATCGCAATGCGA-T
1 TACGT-AATCGCATTGCGATT
* *
4533107 TACGTAAATCGCAATGCGAAT
1 TACGT-AATCGCATTGCGATT
* * *
4533128 TAGGAAAATCGCAATGCGATT
1 TACG-TAATCGCATTGCGATT
*
4533149 ACGTACGTATTCGCATTGCGATT
1 ---TACGTAATCGCATTGCGATT
* *
4533172 TTCCTAATTCGCATTGCGATT
1 TACGTAA-TCGCATTGCGATT
* *
4533193 TACGTAATCTCATTACGATT
1 TACGTAATCGCATTGCGATT
* *
4533213 TACGTATTCGCATTGCCATT
1 TACGTAATCGCATTGCGATT
* *
4533233 TACGTATTCGTATTGCGATT
1 TACGTAATCGCATTGCGATT
4533253 TA-GTAAATCGCA
1 TACGT-AATCGCA
4533265 ACAATATTCT
Statistics
Matches: 129, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
19 2 0.02
20 75 0.58
21 36 0.28
23 13 0.10
24 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (20 bp):
TACGTAATCGCATTGCGATT
Found at i:4534154 original size:24 final size:24
Alignment explanation
Indices: 4534127--4534180 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
4534117 GTATTCGAAA
4534127 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
4534151 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
4534175 TTTGAT
1 TTTGAT
4534181 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:4536727 original size:19 final size:17
Alignment explanation
Indices: 4536692--4536842 Score: 77
Period size: 19 Copynumber: 8.8 Consensus size: 17
4536682 CTTAATGTTT
*
4536692 ATCGCAACGCGGAAATGA
1 ATCGCAATGC-GAAATGA
4536710 CTATCGCAATGCGAAATGAAA
1 --ATCGCAATGCGAAATG--A
*
4536731 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
4536745 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
4536764 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
4536778 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
**
4536797 ATCGCAA--C-AAGGGA
1 ATCGCAATGCGAAATGA
*
4536811 ATCGCAAAGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
4536830 ATCGCAACGCGAA
1 ATCGCAATGCGAA
4536843 TTTAGTTTCG
Statistics
Matches: 104, Mismatches: 10, Indels: 35
0.70 0.07 0.23
Matches are distributed among these distances:
14 24 0.23
16 14 0.13
17 14 0.13
19 42 0.40
20 9 0.09
21 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (17 bp):
ATCGCAATGCGAAATGA
Found at i:4536749 original size:14 final size:14
Alignment explanation
Indices: 4536730--4536784 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
4536720 GCGAAATGAA
4536730 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
4536744 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
4536763 AATCGCAACGAGAG
1 AATCGCAACGAGAG
4536777 AATCGCAA
1 AATCGCAA
4536785 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.45, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:4536754 original size:33 final size:33
Alignment explanation
Indices: 4536712--4536838 Score: 227
Period size: 33 Copynumber: 3.8 Consensus size: 33
4536702 GGAAATGACT
4536712 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
4536745 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
4536778 ATCGCAATGCGAAATGAAAATCGCAACAAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
4536811 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
4536839 CGAATTTAGT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:4536892 original size:33 final size:33
Alignment explanation
Indices: 4536848--4536927 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 33
4536838 GCGAATTTAG
* * *
4536848 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCATTGCGATTTTCA
* *
4536881 TTTCGCTTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCATTGCGATTTTCA
4536914 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
4536928 AGTCATTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.11, C:0.21, G:0.20, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTCTCTCATTGCGATTTTCA
Found at i:4536893 original size:19 final size:18
Alignment explanation
Indices: 4536869--4536927 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
4536859 GATTTTGTCA
4536869 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
*
4536887 TTTGCGA--TTC-TCTCG-
1 -TTGCGATTTTCATTTCGC
4536902 TTGCGATTTTCATTTCGC
1 TTGCGATTTTCATTTCGC
4536920 ATTGCGAT
1 -TTGCGAT
4536928 AGTCATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (18 bp):
TTGCGATTTTCATTTCGC
Found at i:4537053 original size:14 final size:14
Alignment explanation
Indices: 4537034--4537070 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4537024 TATCAATTAA
4537034 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
4537048 ACAAATCATCTTTT
1 ACAAATCAACTTTT
4537062 ACAAATCAA
1 ACAAATCAA
4537071 TTAAATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:4538978 original size:20 final size:20
Alignment explanation
Indices: 4538939--4539030 Score: 81
Period size: 20 Copynumber: 5.0 Consensus size: 20
4538929 TCTGGAACTT
* * *
4538939 AAAATCACAACGTGAAAATG
1 AAAATCGCAACGAGAGAATG
**
4538959 ACTATCGCAACGAGAGAATG
1 AAAATCGCAACGAGAGAATG
4538979 AAAATCGCAAC--GAG-A-G
1 AAAATCGCAACGAGAGAATG
*
4538995 --AATCGCAACGCGA-AATG
1 AAAATCGCAACGAGAGAATG
4539012 AAAATCGCAACGAGAGAAT
1 AAAATCGCAACGAGAGAAT
4539031 CGCAATGCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
14 9 0.16
16 4 0.07
17 2 0.04
18 3 0.05
19 12 0.21
20 27 0.47
ACGTcount: A:0.48, C:0.18, G:0.22, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGAGAGAATG
Found at i:4539000 original size:14 final size:14
Alignment explanation
Indices: 4538981--4539035 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
4538971 AGAGAATGAA
4538981 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
4538995 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
4539014 AATCGCAACGAGAG
1 AATCGCAACGAGAG
4539028 AATCGCAA
1 AATCGCAA
4539036 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.45, C:0.22, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:4539016 original size:33 final size:33
Alignment explanation
Indices: 4538962--4539054 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
4538952 GAAAATGACT
*
4538962 ATCGCAACGAGAGAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGA-AATGAAAATCGCAACGAGAGA
4538996 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
*
4539029 ATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
4539055 TGCGATTATA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 46 0.81
34 11 0.19
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
Found at i:4539103 original size:33 final size:33
Alignment explanation
Indices: 4539066--4539149 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 33
4539056 GCGATTATAG
*
4539066 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCTCGTTGCGATTTTCA
* *
4539099 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCG
1 TTTCGCGTTGCGATTTTCTCGTTGCGATTTTCA
*
4539132 TTTTGCGTTGCGATTTTC
1 TTTCGCGTTGCGATTTTC
4539150 ATTTCAACCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.07, C:0.20, G:0.24, T:0.49
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTCTCGTTGCGATTTTCA
Found at i:4539109 original size:19 final size:19
Alignment explanation
Indices: 4539085--4539154 Score: 78
Period size: 19 Copynumber: 3.9 Consensus size: 19
4539075 GCGATTTTGT
4539085 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
4539104 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
* *
4539118 CGTTGCGATTTTCGTTTTG
1 CGTTGCGATTTTCATTTCG
4539137 CGTTGCGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
4539155 AACCAAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 10 0.24
16 3 0.07
17 3 0.07
19 25 0.61
ACGTcount: A:0.09, C:0.21, G:0.21, T:0.49
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:4539353 original size:94 final size:94
Alignment explanation
Indices: 4539245--4539618 Score: 566
Period size: 94 Copynumber: 4.1 Consensus size: 94
4539235 ATGGATTGCA
* *
4539245 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
4539309 TTAGCAGAATTGGCAGCAAACGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
* *
4539338 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAAAGTGTTAAAAAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
4539403 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
*
4539432 TTACTTTCAACCAAAACACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
4539497 TTAGCAGAATTGGCAGCAACCAAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
* * * *
4539526 TTAC-TTCAACCAAAAG--AAAACAAAAGGCAAATACTAGCTTCACAATGTT----AATAAACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
*
4539584 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAATAAAT
4539614 TTACT
1 TTACT
4539619 AAGCAATCTA
Statistics
Matches: 261, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
88 40 0.15
91 5 0.02
92 24 0.09
93 15 0.06
94 177 0.68
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.22
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAATAAAT
Found at i:4541376 original size:19 final size:19
Alignment explanation
Indices: 4541312--4541424 Score: 110
Period size: 20 Copynumber: 6.1 Consensus size: 19
4541302 TCTTTTGGTT
*
4541312 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
4541331 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
4541351 GGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
* *
4541371 GAAATGAAAATCTCAA--T
1 GAAATGAAAATCGCAACGC
*
4541388 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
4541404 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
4541423 GA
1 GA
4541425 TTTTGGTTTC
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
14 9 0.12
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 29 0.39
20 31 0.41
21 2 0.03
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:4541524 original size:20 final size:20
Alignment explanation
Indices: 4541455--4541541 Score: 88
Period size: 20 Copynumber: 4.3 Consensus size: 20
4541445 TATATCGTTA
*
4541455 CGATTTTCA-TTTCGCGTTG
1 CGATTTTCATTTTCGTGTTG
*
4541474 AGATTTTCATTTCTC-TCGTTG
1 CGATTTTCATTT-TCGT-GTTG
**
4541495 CGATAGTCATTTTCGTGTTG
1 CGATTTTCATTTTCGTGTTG
* *
4541515 TGATTTTCATTTTCATGTTG
1 CGATTTTCATTTTCGTGTTG
4541535 CGATTTT
1 CGATTTT
4541542 AAGTTTAGAA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
19 8 0.15
20 30 0.56
21 16 0.30
ACGTcount: A:0.14, C:0.16, G:0.18, T:0.52
Consensus pattern (20 bp):
CGATTTTCATTTTCGTGTTG
Found at i:4542159 original size:20 final size:21
Alignment explanation
Indices: 4542072--4542159 Score: 51
Period size: 20 Copynumber: 4.3 Consensus size: 21
4542062 GGCGCTATGT
*
4542072 AAATCGCATTGCGATAGTCAG
1 AAATCGCAATGCGATAGTCAG
* * *
4542093 -ATTCGCATTGCGAT--TTACG
1 AAATCGCAATGCGATAGTCA-G
* * * *
4542112 TAATCGCAACGCGA-ATTTGAG
1 AAATCGCAATGCGATA-GTCAG
4542133 AAATCGCAATGCGATAGTCAG
1 AAATCGCAATGCGATAGTCAG
4542154 -AATCGC
1 AAATCGC
4542160 GTTGCGAATC
Statistics
Matches: 51, Mismatches: 10, Indels: 13
0.69 0.14 0.18
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 29 0.57
21 16 0.31
22 3 0.06
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (21 bp):
AAATCGCAATGCGATAGTCAG
Found at i:4545346 original size:16 final size:16
Alignment explanation
Indices: 4545325--4545355 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
4545315 TAATATTGAA
4545325 ACTTGAACTCAAAAAG
1 ACTTGAACTCAAAAAG
4545341 ACTTGAACTCAAAAA
1 ACTTGAACTCAAAAA
4545356 AAAATTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (16 bp):
ACTTGAACTCAAAAAG
Found at i:4547521 original size:21 final size:21
Alignment explanation
Indices: 4547497--4547592 Score: 66
Period size: 21 Copynumber: 4.6 Consensus size: 21
4547487 CTCTTGTTCT
* *
4547497 GATGGCACCGCAGTCGTTGCA
1 GATGGCACCGCAGCCATTGCA
* * *
4547518 GATGGTACCGTAGCCATTTCA
1 GATGGCACCGCAGCCATTGCA
* * ** *
4547539 GATGGCACCACAACTGTTTCA
1 GATGGCACCGCAGCCATTGCA
* * *
4547560 GATGACACCGTAGCCATTTCA
1 GATGGCACCGCAGCCATTGCA
*
4547581 GATGCCACCGCA
1 GATGGCACCGCA
4547593 ATCAATTCAT
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (21 bp):
GATGGCACCGCAGCCATTGCA
Found at i:4547544 original size:42 final size:42
Alignment explanation
Indices: 4547497--4547593 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
4547487 CTCTTGTTCT
* **
4547497 GATGGCACCGC-AGTCGTTGCAGATGGTACCGTAGCCATTTCA
1 GATGGCACCGCAACT-GTTGCAGATGACACCGTAGCCATTTCA
* *
4547539 GATGGCACCACAACTGTTTCAGATGACACCGTAGCCATTTCA
1 GATGGCACCGCAACTGTTGCAGATGACACCGTAGCCATTTCA
*
4547581 GATGCCACCGCAA
1 GATGGCACCGCAA
4547594 TCAATTCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 45 0.96
43 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (42 bp):
GATGGCACCGCAACTGTTGCAGATGACACCGTAGCCATTTCA
Found at i:4548161 original size:13 final size:13
Alignment explanation
Indices: 4548117--4548165 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
4548107 ATGTTGTTAT
4548117 TATTTAATTGTTTG
1 TATTTAA-TGTTTG
* *
4548131 AATTGTAACGTTTG
1 TATT-TAATGTTTG
*
4548145 TATTTAATGTTTC
1 TATTTAATGTTTG
4548158 TATTTAAT
1 TATTTAAT
4548166 TATTTTTACC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 15 0.52
14 11 0.38
15 3 0.10
ACGTcount: A:0.27, C:0.04, G:0.12, T:0.57
Consensus pattern (13 bp):
TATTTAATGTTTG
Found at i:4551341 original size:8 final size:9
Alignment explanation
Indices: 4551322--4551346 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4551312 AAATAATACT
4551322 AAAAATTAA
1 AAAAATTAA
4551331 AAAAATTAA
1 AAAAATTAA
4551340 AAAAATT
1 AAAAATT
4551347 TAAATAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATTAA
Found at i:4551468 original size:11 final size:11
Alignment explanation
Indices: 4551454--4551491 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
4551444 ATTTGGTTAA
*
4551454 ATAAATTAAAT
1 ATAAAATAAAT
4551465 ATAAAATAAAT
1 ATAAAATAAAT
*
4551476 ATAATAT-AAT
1 ATAAAATAAAT
4551486 ATAAAA
1 ATAAAA
4551492 AATAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAAAATAAAT
Found at i:4551473 original size:16 final size:16
Alignment explanation
Indices: 4551452--4551490 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
4551442 AAATTTGGTT
4551452 AAATAAAT-TAAATATA
1 AAATAAATAT-AATATA
4551468 AAATAAATATAATATA
1 AAATAAATATAATATA
*
4551484 ATATAAA
1 AAATAAA
4551491 AAATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAATATAATATA
Found at i:4560035 original size:21 final size:21
Alignment explanation
Indices: 4560010--4560049 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4560000 ATTAAAGGGA
4560010 TGAGAATTTAT-TTCAAATAAT
1 TGAG-ATTTATATTCAAATAAT
*
4560031 TGAGATTTATATTTAAATA
1 TGAGATTTATATTCAAATA
4560050 TATCTACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (21 bp):
TGAGATTTATATTCAAATAAT
Found at i:4560776 original size:13 final size:14
Alignment explanation
Indices: 4560755--4560787 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
4560745 ACTGGCGTTC
4560755 AATTTTTTTGTTTA
1 AATTTTTTTGTTTA
4560769 AATTTTTTTGTTTA
1 AATTTTTTTGTTTA
4560783 AATTT
1 AATTT
4560788 GATGTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (14 bp):
AATTTTTTTGTTTA
Found at i:4563035 original size:27 final size:27
Alignment explanation
Indices: 4562994--4563049 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
4562984 CCACACACAA
4562994 AAACTTATTAATCTAACAATCATAATT
1 AAACTTATTAATCTAACAATCATAATT
* **
4563021 AAACTTATTATTCTAATTATCATAATT
1 AAACTTATTAATCTAACAATCATAATT
4563048 AA
1 AA
4563050 TAACTTGTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (27 bp):
AAACTTATTAATCTAACAATCATAATT
Found at i:4565413 original size:16 final size:15
Alignment explanation
Indices: 4565388--4565420 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
4565378 TAATTTATAC
4565388 ATAATTTTTAATTTT
1 ATAATTTTTAATTTT
4565403 ATAACTTTTTAATTTT
1 ATAA-TTTTTAATTTT
4565419 AT
1 AT
4565421 TTTTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
ATAATTTTTAATTTT
Found at i:4565625 original size:21 final size:21
Alignment explanation
Indices: 4565599--4565640 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
4565589 AGGTAAAATA
4565599 TAATAATATATTTTTAATTTT
1 TAATAATATATTTTTAATTTT
*
4565620 TAATAATTTATTTTTAATTTT
1 TAATAATATATTTTTAATTTT
4565641 ATATTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TAATAATATATTTTTAATTTT
Found at i:4566110 original size:21 final size:20
Alignment explanation
Indices: 4566084--4566126 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
4566074 AGGTAAAATA
4566084 TAATAATATATTTTTAATTTT
1 TAATAATATATTTTT-ATTTT
*
4566105 TAATAATTTATTTTTATTTT
1 TAATAATATATTTTTATTTT
4566125 TA
1 TA
4566127 TATTTAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TAATAATATATTTTTATTTT
Found at i:4571526 original size:33 final size:32
Alignment explanation
Indices: 4571458--4571537 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
4571448 TGATATTAAA
* * *
4571458 AAAATTAATAAATACTATTATAAATTTTTTAT
1 AAAATTAATAAATAATATTATAAATATGTTAT
*
4571490 AAAATTAATCAAATAATATATATTAATATGTT-T
1 AAAATTAAT-AAATAATAT-TATAAATATGTTAT
4571523 AAAA-TAAT-AATAATA
1 AAAATTAATAAATAATA
4571538 ATTACTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
30 7 0.17
32 13 0.31
33 13 0.31
34 9 0.21
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (32 bp):
AAAATTAATAAATAATATTATAAATATGTTAT
Found at i:4572799 original size:3 final size:3
Alignment explanation
Indices: 4572791--4572865 Score: 77
Period size: 3 Copynumber: 26.0 Consensus size: 3
4572781 AGTAATTATT
* *
4572791 TAA TAA TAA T-A TAA T-A TAA -CA TAA T-A TATA TAA TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
**
4572833 TAA TAA TAA TTT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4572866 AAATGAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 7 0.12
3 49 0.83
4 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:4572816 original size:18 final size:18
Alignment explanation
Indices: 4572790--4572861 Score: 94
Period size: 18 Copynumber: 4.0 Consensus size: 18
4572780 TAGTAATTAT
4572790 TTAATAATAAT-ATAATA
1 TTAATAATAATAATAATA
*
4572807 TAACATAAT-ATATATAATA
1 TTA-ATAATAATA-ATAATA
*
4572826 TTAATAATAATAATAATT
1 TTAATAATAATAATAATA
4572844 TTAATAATAATAATAATA
1 TTAATAATAATAATAATA
4572862 ATAAAAATGA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.09
18 32 0.68
19 11 0.23
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATAATAATAATAATA
Found at i:4573100 original size:3 final size:3
Alignment explanation
Indices: 4573092--4573153 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
4573082 AGATGAAGTA
* * * * *
4573092 GAG GAG GAG GAA GAG GAG GAG GAA GAA GAG GAG GAG GAA GAG GAG AAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
* *
4573140 GAA GAA GAG GAG GA
1 GAG GAG GAG GAG GA
4573154 AGAAGAGAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:4573110 original size:15 final size:15
Alignment explanation
Indices: 4573092--4573159 Score: 88
Period size: 15 Copynumber: 4.7 Consensus size: 15
4573082 AGATGAAGTA
*
4573092 GAGGAGGAGGAAGAG
1 GAGGAGGAAGAAGAG
4573107 GAGGAGGAAGAAGAG
1 GAGGAGGAAGAAGAG
4573122 GAGGA-G--GAAGAG
1 GAGGAGGAAGAAGAG
*
4573134 GAGAAGGAAGAAGAG
1 GAGGAGGAAGAAGAG
*
4573149 GAGGAAGAAGA
1 GAGGAGGAAGA
4573160 GAATGAAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
12 10 0.22
13 1 0.02
14 1 0.02
15 34 0.74
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (15 bp):
GAGGAGGAAGAAGAG
Found at i:4573116 original size:27 final size:27
Alignment explanation
Indices: 4573086--4573177 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
4573076 AGAAGTAGAT
* *
4573086 GAAGTAGAGGAGGAGGAAGAGGAGGAG
1 GAAGAAGAGGAGGAGGAAGAGGAGAAG
4573113 GAAGAAGAGGAGGAGGAAGAGGAGAAG
1 GAAGAAGAGGAGGAGGAAGAGGAGAAG
* *
4573140 GAAGAAGAGGAGGAAGAAGAGAATGAA-
1 GAAGAAGAGGAGGAGGAAGAGGA-GAAG
*
4573167 GAAGAAAAGGA
1 GAAGAAGAGGA
4573178 AAAATAGAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 56 0.95
28 3 0.05
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (27 bp):
GAAGAAGAGGAGGAGGAAGAGGAGAAG
Found at i:4573157 original size:12 final size:12
Alignment explanation
Indices: 4573095--4573171 Score: 91
Period size: 12 Copynumber: 6.2 Consensus size: 12
4573085 TGAAGTAGAG
*
4573095 GAGGAGGAAGAG
1 GAGGAGGAAGAA
4573107 GAGGAGGAAGAA
1 GAGGAGGAAGAA
*
4573119 GAGGAGGAGGAA
1 GAGGAGGAAGAA
4573131 GAGGAGAAGGAAGAA
1 GA-G-G-AGGAAGAA
4573146 GAGGAGGAAGAA
1 GAGGAGGAAGAA
* *
4573158 GAGAATGAAGAA
1 GAGGAGGAAGAA
4573170 GA
1 GA
4573172 AAAGGAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
12 44 0.77
13 2 0.04
14 2 0.04
15 9 0.16
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.01
Consensus pattern (12 bp):
GAGGAGGAAGAA
Found at i:4573177 original size:24 final size:24
Alignment explanation
Indices: 4573126--4573188 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
4573116 GAAGAGGAGG
* * **
4573126 AGGAAGAGGAGAAGGAAGAAGAGG
1 AGGAAGAAGAGAATGAAGAAGAAA
4573150 AGGAAGAAGAGAATGAAGAAGAAA
1 AGGAAGAAGAGAATGAAGAAGAAA
* *
4573174 AGGAAAAATAGAATG
1 AGGAAGAAGAGAATG
4573189 TAGTGGGGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.57, C:0.00, G:0.38, T:0.05
Consensus pattern (24 bp):
AGGAAGAAGAGAATGAAGAAGAAA
Found at i:4575070 original size:18 final size:18
Alignment explanation
Indices: 4575048--4575094 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
4575038 GATGTAAGCC
4575048 AAATTTTGTATGTGAATG
1 AAATTTTGTATGTGAATG
*
4575066 GAATTTTGTATGTGAATG
1 AAATTTTGTATGTGAATG
*
4575084 AAATTATGTAT
1 AAATTTTGTAT
4575095 AAGATGAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
AAATTTTGTATGTGAATG
Found at i:4578600 original size:200 final size:198
Alignment explanation
Indices: 4578058--4578624 Score: 672
Period size: 200 Copynumber: 2.8 Consensus size: 198
4578048 ATCGATACAA
* * * * * *
4578058 GCAGAGAGTATCGATACACGTATCACAAGTATCAATACTTATAACTTCGAAACTGGTTACTTTAA
1 GCAGAAAGTATCGATACATGTATCACAAGTATCGATTCTTATAACTTCGAAACAGATTACTTTAA
* * * *
4578123 AGTAATAGGTAAA-CTACAATGTAAGCAATAAAAATATATCGGTTAAATGACAAAATGTGTAAAC
66 AGTAATAGGTAAATTTACAATGTAAGCAATAAAAATATATC-GTTTAATGAAAAAATGCGTAAAC
* * *
4578187 ATAAAGTTGTGATACTTTTTATAT-TGTATTGATACTTTTGGTCTAGTATGCTTCCCAAACGAGA
130 ATAAAGTT-TGATACTTTTTGTATATGTATTGATACTTTTAGTCCAGTATGCTTCCCAAACGAGA
4578251 TGCAC
194 TGCAC
*
4578256 GCAGAAAGTATCGATACATGTATCACAAGTATCGATTCTTATAACTTCGAAATAGATTACTTTAA
1 GCAGAAAGTATCGATACATGTATCACAAGTATCGATTCTTATAACTTCGAAACAGATTACTTTAA
* * * * * *
4578321 AGTAATAGGTAAATTTATAATGTAACCTATAAATATATACCGATTTAATGAAAAAATACGTAAAC
66 AGTAATAGGTAAATTTACAATGTAAGCAATAAAAATATATCG-TTTAATGAAAAAATGCGTAAAC
* * *
4578386 ATAAAGTTTTGATACTTTTTGTATATGTATCGATACTTTTATTCCAGTATGCTTCCCAAATGAGA
130 ATAAAG-TTTGATACTTTTTGTATATGTATTGATACTTTTAGTCCAGTATGCTTCCCAAACGAGA
4578451 TGCAC
194 TGCAC
* * * * * * *
4578456 GTATAAAGTATTGATACATGCATCACAAGTATTGATTCTTATAACTTCGAACCCGATTACTTTAA
1 GCAGAAAGTATCGATACATGTATCACAAGTATCGATTCTTATAACTTCGAAACAGATTACTTTAA
* ** * * ** * * *
4578521 AGTAATAAGTAAATTTACAATGTAAGCGGTAAAAATCTATCGTTTAATGATAGTAGGCGTTAGCA
66 AGTAATAGGTAAATTTACAATGTAAGCAATAAAAATATATCGTTTAATGAAAAAATGCGTAAAC-
* * *
4578586 AAAAAGTATTGATACTTCTTGTATAGGTATTGATA-TTTT
130 ATAAAGT-TTGATACTTTTTGTATATGTATTGATACTTTT
4578625 CGATGTAAAC
Statistics
Matches: 313, Mismatches: 50, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
198 72 0.23
199 79 0.25
200 162 0.52
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (198 bp):
GCAGAAAGTATCGATACATGTATCACAAGTATCGATTCTTATAACTTCGAAACAGATTACTTTAA
AGTAATAGGTAAATTTACAATGTAAGCAATAAAAATATATCGTTTAATGAAAAAATGCGTAAACA
TAAAGTTTGATACTTTTTGTATATGTATTGATACTTTTAGTCCAGTATGCTTCCCAAACGAGATG
CAC
Found at i:4583279 original size:20 final size:20
Alignment explanation
Indices: 4583256--4583293 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4583246 TTGGAAATTG
4583256 ACAAAACC-GATTAAAATTCT
1 ACAAAACCTG-TTAAAATTCT
4583276 ACAAAACCTGTTAAAATT
1 ACAAAACCTGTTAAAATT
4583294 TGATAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.26
Consensus pattern (20 bp):
ACAAAACCTGTTAAAATTCT
Found at i:4586141 original size:108 final size:107
Alignment explanation
Indices: 4585971--4586367 Score: 418
Period size: 108 Copynumber: 3.6 Consensus size: 107
4585961 TTATTATGGT
* * * * *
4585971 TGATAACTAATTAAATAATTAACCAATTATGTTATTGTCGGATTTCTAAGGCTACATCAGCTTAA
1 TGATAACAAATTAAGTAATTAACCTATTATGTTATCGTCGGATTTCTAAGGC-CCATCAGCTTAA
* *
4586036 ACTTTGGTAACGTTTTAGGCGTTACCTAATATGTTGATAATAC
65 ACTTTGATAACATTTTAGGCGTTACCTAATATGTTGATAATAC
* * * *
4586079 TGATAATAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTATGGACCTATCAGCTTTA
1 TGATAACAAATTAAGTAATTAACCTATTATGTTATCGTCGGATTTCTAAGG-CCCATCAGC-TT-
*** * *** * **
4586144 AAAAGGTGATACCTATTATCTTACATAAGATCTACCTAATATGTT-ATTATGGT
63 AAACTTTGATAAC-A-T-T-TT--AGGCG-T-TACCTAATATGTTGATAAT-AC
* ** *
4586197 TGATAACAAATCAAGTAATTAACCGGTTATGTTATTGTCGGATTTCTAAGGCTCCATCAGCTTAA
1 TGATAACAAATTAAGTAATTAACCTATTATGTTATCGTCGGATTTCTAAGGC-CCATCAGCTTAA
4586262 ACTTTGATAACATTTTAGGCGTTACCTAATATGTTGATAATAC
65 ACTTTGATAACATTTTAGGCGTTACCTAATATGTTGATAATAC
*
4586305 TGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTT
1 TGATAACAAATTAAGTAATTAACCTATTATGTTATCGTCGGATTTCTAAGG-CCCATCAGCTT
4586368 TAAAAGGAGC
Statistics
Matches: 230, Mismatches: 44, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
108 119 0.52
109 9 0.04
110 10 0.04
112 3 0.01
113 2 0.01
114 3 0.01
115 1 0.00
116 11 0.05
117 8 0.03
118 64 0.28
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (107 bp):
TGATAACAAATTAAGTAATTAACCTATTATGTTATCGTCGGATTTCTAAGGCCCATCAGCTTAAA
CTTTGATAACATTTTAGGCGTTACCTAATATGTTGATAATAC
Found at i:4586237 original size:226 final size:226
Alignment explanation
Indices: 4585728--4586372 Score: 963
Period size: 226 Copynumber: 2.9 Consensus size: 226
4585718 ATGTACACGG
* * * * *
4585728 TAATATGTTGATAAAGGTTGATACCAAATCAAGTAATTAACCTATTATGTTATCT-TCGAATTTC
1 TAATATGTT-ATTATGGTTGATAACAAATCAAGTAATTAACCAATTATGTTAT-TGTCGGATTTC
* * * * * *
4585792 TAAGGCCCCATCAACTTAAATTTTGGAAACATTTTAGGTGTTACCTAATATGTTGATAATATTGA
64 TAAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGA
* * *
4585857 TAACAAGTTAAGTAATTAACCTATTTTGTTATCTTCGGATTTCTAAGGCCCCATTAGC-TTAAAA
129 TAACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAA
* * *
4585921 AGGCGCTACCTATTACATTACATAAGCGCTTCC
194 AGGCGATACCTATTACATTACATAAGAGCTACC
* * *
4585954 TAATATGTTATTATGGTTGATAACTAATTAAATAATTAACCAATTATGTTATTGTCGGATTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCAATTATGTTATTGTCGGATTTCTA
* *
4586019 AGGCTACATCAGCTTAAACTTTGGTAACGTTTTAGGCGTTACCTAATATGTTGATAATACTGATA
66 AGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATA
* * * *
4586084 ATAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTATGGACCTATCAGCTTTAAAAAG
131 ACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAG
* *
4586149 GTGATACCTATTATC-TTACATAAGATCTACC
196 GCGATACCTATTA-CATTACATAAGAGCTACC
**
4586180 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATTGTCGGATTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCAATTATGTTATTGTCGGATTTCTA
*
4586245 AGGCTCCATCAGCTTAAACTTTGATAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATA
66 AGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATA
4586310 ACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAA
131 ACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAA
4586373 GGAGCTACCA
Statistics
Matches: 376, Mismatches: 40, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
224 1 0.00
225 152 0.40
226 222 0.59
227 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (226 bp):
TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCAATTATGTTATTGTCGGATTTCTA
AGGCTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTGATAATACTGATA
ACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAG
GCGATACCTATTACATTACATAAGAGCTACC
Found at i:4589036 original size:13 final size:14
Alignment explanation
Indices: 4589013--4589044 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
4589003 TTTAAACTAA
4589013 ACTTTTCAAAAAAT
1 ACTTTTCAAAAAAT
4589027 ACTTTT-AAAAAAT
1 ACTTTTCAAAAAAT
4589040 A-TTTT
1 ACTTTT
4589045 TTACAGCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.22
13 8 0.44
14 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (14 bp):
ACTTTTCAAAAAAT
Found at i:4590204 original size:60 final size:60
Alignment explanation
Indices: 4590136--4590248 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
4590126 TTGAAATATT
** * * *
4590136 TAAAAGTTT-AGGGACTAAATTAGAAAGAGGGTCCTAGTTTTGGGATGGAATTATAATGTG
1 TAAAAGTTTGA-GGACTAAATTAGAAAGAGAATCATAGTGTTGGGATGAAATTATAATGTG
* *
4590196 TAAAAGTTTGAGGACTAATTTAGAATGAGAATCATAGTGTTGGGATGAAATTA
1 TAAAAGTTTGAGGACTAAATTAGAAAGAGAATCATAGTGTTGGGATGAAATTA
4590249 GAATATTCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 44 0.98
61 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.32
Consensus pattern (60 bp):
TAAAAGTTTGAGGACTAAATTAGAAAGAGAATCATAGTGTTGGGATGAAATTATAATGTG
Found at i:4590261 original size:60 final size:59
Alignment explanation
Indices: 4590120--4590261 Score: 144
Period size: 60 Copynumber: 2.4 Consensus size: 59
4590110 GAATTTGAGA
** * *
4590120 ATGAAATT-GAAATATTTAAAAGTTTAGGGACTAAATTAGAAAGAGGGTCCTAGTTTTGGG
1 ATGAAATTAG-AATA-TTAAAAGTTTAGGGACTAAATTAGAAAGAGAATCATAGTGTTGGG
* * * * *
4590180 ATGGAATTATAATGTGTAAAAGTTT-GAGGACTAATTTAGAATGAGAATCATAGTGTTGGG
1 ATGAAATTAGAATAT-TAAAAGTTTAG-GGACTAAATTAGAAAGAGAATCATAGTGTTGGG
4590240 ATGAAATTAGAATATTCAAAAG
1 ATGAAATTAGAATATT-AAAAG
4590262 ATAAAGGATC
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
59 3 0.05
60 63 0.95
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (59 bp):
ATGAAATTAGAATATTAAAAGTTTAGGGACTAAATTAGAAAGAGAATCATAGTGTTGGG
Found at i:4599343 original size:9 final size:9
Alignment explanation
Indices: 4599331--4599356 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4599321 AATTAACTAA
4599331 AAGATAAAT
1 AAGATAAAT
4599340 AAGATAAAT
1 AAGATAAAT
4599349 AAGATAAA
1 AAGATAAA
4599357 AATATTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (9 bp):
AAGATAAAT
Found at i:4600939 original size:2 final size:2
Alignment explanation
Indices: 4600932--4600995 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
4600922 TAAAATTTCA
4600932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4600974 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
4600996 TTAAAATACA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4608411 original size:2 final size:2
Alignment explanation
Indices: 4608404--4608429 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4608394 GGGATAATTA
4608404 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4608430 TAATTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4618437 original size:45 final size:45
Alignment explanation
Indices: 4618342--4618440 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
4618332 CGATGTTTTG
* *
4618342 AAAAAGCATGAGTGCATCGATGCATGGTCTTGTGCATCAATGCAT
1 AAAATGCATGAGTGCATCGATGCATGGTCATGTGCATCAATGCAT
* **
4618387 CAAATGCACTGAGTGCATCGATGCATGGT-ATGTGCATGGATGCAT
1 AAAATGCA-TGAGTGCATCGATGCATGGTCATGTGCATCAATGCAT
4618432 AAAATGCAT
1 AAAATGCAT
4618441 TCGATGTTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 26 0.55
46 20 0.43
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (45 bp):
AAAATGCATGAGTGCATCGATGCATGGTCATGTGCATCAATGCAT
Found at i:4618485 original size:20 final size:20
Alignment explanation
Indices: 4618460--4618497 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4618450 GAAAACAATA
4618460 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
4618480 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
4618498 CACTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:4628206 original size:25 final size:26
Alignment explanation
Indices: 4628155--4628211 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
4628145 ATAAAAATAT
*
4628155 TTTTAATTTTTTAAGACTCAAATTTAA
1 TTTT-ATTTTTTAAGACTCAAAGTTAA
4628182 TTTTATTTTTTAA-ACT-AAAGGTTAA
1 TTTTATTTTTTAAGACTCAAA-GTTAA
*
4628207 ATTTA
1 TTTTA
4628212 ACTAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.11
25 11 0.41
26 9 0.33
27 4 0.15
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (26 bp):
TTTTATTTTTTAAGACTCAAAGTTAA
Found at i:4628209 original size:26 final size:27
Alignment explanation
Indices: 4628155--4628210 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
4628145 ATAAAAATAT
*
4628155 TTTTAATTTTTTAAGACTCAAATTTAA
1 TTTTAATTTTTTAAGACTCAAATTAAA
4628182 TTTT-ATTTTTTAA-ACT-AAAGGTTAAA
1 TTTTAATTTTTTAAGACTCAAA--TTAAA
4628208 TTT
1 TTT
4628211 AACTAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 3 0.12
25 3 0.12
26 16 0.62
27 4 0.15
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (27 bp):
TTTTAATTTTTTAAGACTCAAATTAAA
Found at i:4642324 original size:18 final size:18
Alignment explanation
Indices: 4642301--4642343 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
4642291 GTAGCTAAAA
*
4642301 TTGGTATTGGTACTCAAT
1 TTGGTATTGGTACCCAAT
4642319 TTGGTATTGGTACCCAAT
1 TTGGTATTGGTACCCAAT
*
4642337 ATGGTAT
1 TTGGTAT
4642344 CGATACCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (18 bp):
TTGGTATTGGTACCCAAT
Found at i:4652824 original size:26 final size:26
Alignment explanation
Indices: 4652793--4652843 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4652783 AAAAGGTGCA
* *
4652793 CTGACTAGATCTTCTAGAAACTGCCG
1 CTGACTAGACCTTCTAAAAACTGCCG
*
4652819 CTGACTGGACCTTCTAAAAACTGCC
1 CTGACTAGACCTTCTAAAAACTGCC
4652844 ACGTCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
CTGACTAGACCTTCTAAAAACTGCCG
Found at i:4654341 original size:258 final size:255
Alignment explanation
Indices: 4653867--4654615 Score: 975
Period size: 258 Copynumber: 2.9 Consensus size: 255
4653857 TACCACTAAA
* * * *
4653867 CCATAGAAGGGTTTTTTTGCCCCAAAATGAAACGTTGAGTGTTAAAATGTTTCAAAAAAACAATA
1 CCATAGAAAGGTTTTTTTGTCCCAAAATGAAAAG-TGAGTGGTAAAATG-TTCAAAAAAACAATA
* * ** *
4653932 CGGACAAATTTAACAATATTGTCAAACGTTAGGGTTATTTTGTCACATTATGCC-AAATAAAACA
64 AGG-CAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
* **
4653996 TTAACTATTTTGACACTTTTGCTCATGTAACAATAA-TCACTTTTGCACGAATTTTAATAGCATT
128 TTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTA-TTTTATACGAATTTTAATAGCATT
* * * * *
4654060 GGTTTCTATCATAAATATTTATACACCAAATACACGTGGACTATGAGTTGACCAATGGTTTCTAT
192 GGCTTCAATCAT-AATTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
* *
4654125 CCATAGAAAGG-TTTTTTGTCCCAAAATGAAATAGTCAATGGTAAAATGTTCCAAAAAAACAATA
1 CCATAGAAAGGTTTTTTTGTCCCAAAATGAAA-AGTGAGTGGTAAAATGTT-CAAAAAAACAATA
*
4654189 TATGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
64 -AGGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
* * *
4654254 CTAACTATTTCGACACTTTTGCTCATGTAACAATAATTTATTTTATACAAATTTTAATAGCATTG
128 TTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATTG
* * * *
4654319 GCTTCGATCATAATTTTTTATACACCAAAGACACGTCGACTGTGAGTTTACCAATGGTTTCCAT
193 GCTTCAATCATAA-TTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
* * * *
4654383 CCATAG-AAGGATTTTTTTGTCCCAAAAATTAAACATTGAGTGGTACAATGTTCTAAAAAACAAT
1 CCATAGAAAGG-TTTTTTTGTCCC-AAAATGAAA-AGTGAGTGGTAAAATGTTCAAAAAAACAAT
* ** * * *
4654447 ACGGGCAAATTTAACAATACTGTCAAATATTAGGATTATTTTTTTGCGTTATGCCAAAAGAAAAC
63 A-AGGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAAC
* * *
4654512 ATTAAATATTTTAACACTTTTGCTCATGTAACAATAATTTCTTTTATACGAATTTTAATAGCATT
127 ATTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATT
* *
4654577 GGCTTCAATCATAAATTTTATACACCAAATAGACGTCGA
192 GGCTTCAATCATAATTTTTATACACCAAATACACGTCGA
4654616 AAAAATTGTG
Statistics
Matches: 431, Mismatches: 51, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
256 2 0.00
257 96 0.22
258 158 0.37
259 153 0.35
260 22 0.05
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (255 bp):
CCATAGAAAGGTTTTTTTGTCCCAAAATGAAAAGTGAGTGGTAAAATGTTCAAAAAAACAATAAG
GCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACATTA
ACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATTGGCT
TCAATCATAATTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
Found at i:4654535 original size:259 final size:256
Alignment explanation
Indices: 4653867--4654615 Score: 1009
Period size: 259 Copynumber: 2.9 Consensus size: 256
4653857 TACCACTAAA
* * *
4653867 CCATAGAAGGGTTTTTTTGCCCCAAAATGAAACGTTGAGTGTTAAAATGTTTCAAAAAAACAATA
1 CCATAGAA-GGTTTTTTTGTCCCAAAATGAAACATTGAGTGGTAAAATG-TTCAAAAAAACAATA
* * ** *
4653932 CGGACAAATTTAACAATATTGTCAAACGTTAGGGTTATTTTGTCACATTATGCC-AAATAAAACA
64 CGGGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
* **
4653996 TTAACTATTTTGACACTTTTGCTCATGTAACAATAA-TCACTTTTGCACGAATTTTAATAGCATT
129 TTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTA-TTTTATACGAATTTTAATAGCATT
* * * * *
4654060 GGTTTCTATCATAAATATTTATACACCAAATACACGTGGACTATGAGTTGACCAATGGTTTCTAT
193 GGCTTCAATCAT-AATTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
* * * *
4654125 CCATAGAAAGG-TTTTTTGTCCCAAAATGAAATAGTCAATGGTAAAATGTTCCAAAAAAACAATA
1 CCATAG-AAGGTTTTTTTGTCCCAAAATGAAACATTGAGTGGTAAAATGTT-CAAAAAAACAATA
***
4654189 TATGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
64 CGGGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
* * *
4654254 CTAACTATTTCGACACTTTTGCTCATGTAACAATAATTTATTTTATACAAATTTTAATAGCATTG
129 TTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATTG
* * * *
4654319 GCTTCGATCATAATTTTTTATACACCAAAGACACGTCGACTGTGAGTTTACCAATGGTTTCCAT
194 GCTTCAATCATAA-TTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
* * *
4654383 CCATAGAAGGATTTTTTTGTCCCAAAAATTAAACATTGAGTGGTACAATGTTCTAAAAAACAATA
1 CCATAGAAGG-TTTTTTTGTCCC-AAAATGAAACATTGAGTGGTAAAATGTTCAAAAAAACAATA
** * * *
4654448 CGGGCAAATTTAACAATACTGTCAAATATTAGGATTATTTTTTTGCGTTATGCCAAAAGAAAACA
64 CGGGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACA
* * *
4654513 TTAAATATTTTAACACTTTTGCTCATGTAACAATAATTTCTTTTATACGAATTTTAATAGCATTG
129 TTAACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATTG
* *
4654578 GCTTCAATCATAAATTTTATACACCAAATAGACGTCGA
194 GCTTCAATCATAATTTTTATACACCAAATACACGTCGA
4654616 AAAAATTGTG
Statistics
Matches: 429, Mismatches: 54, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
256 2 0.00
257 96 0.22
258 154 0.36
259 155 0.36
260 22 0.05
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (256 bp):
CCATAGAAGGTTTTTTTGTCCCAAAATGAAACATTGAGTGGTAAAATGTTCAAAAAAACAATACG
GGCAAATTTAACAATACTGTCAAACGTTAGGGTTATTTTGTTGCATTATGCCAAAAGAAAACATT
AACTATTTTGACACTTTTGCTCATGTAACAATAATTTATTTTATACGAATTTTAATAGCATTGGC
TTCAATCATAATTTTTATACACCAAATACACGTCGACTATGAGTTGACCAATGGTTTCCAT
Found at i:4655830 original size:10 final size:11
Alignment explanation
Indices: 4655804--4655829 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4655794 AAGAAAATTA
4655804 TTTTTGATTTG
1 TTTTTGATTTG
4655815 TTTTTGATTTG
1 TTTTTGATTTG
4655826 TTTT
1 TTTT
4655830 GTATTGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.15, T:0.77
Consensus pattern (11 bp):
TTTTTGATTTG
Found at i:4668076 original size:41 final size:41
Alignment explanation
Indices: 4667987--4668080 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 41
4667977 TTCGATATGG
**
4667987 AGTATACGATACCAAGGGGTCAATATTGATACTACAACCATC
1 AGTAT-CGATACCAAGGGGTCAATATCAATACTACAACCATC
* * ** * *
4668029 ATTATCGATACCATGGGGTCAATATCAATACTACTTCCCTT
1 AGTATCGATACCAAGGGGTCAATATCAATACTACAACCATC
4668070 AGTATCGATAC
1 AGTATCGATAC
4668081 TTCCTGCTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 39 0.91
42 4 0.09
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (41 bp):
AGTATCGATACCAAGGGGTCAATATCAATACTACAACCATC
Found at i:4669801 original size:19 final size:17
Alignment explanation
Indices: 4669752--4669802 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
4669742 TTGTTTAATG
4669752 AAATATAATGAGAT-AAA
1 AAATA-AATGAGATAAAA
*
4669769 AAATAAAT-AAATAAATA
1 AAATAAATGAGATAAA-A
4669786 AAATAAATTGAGATAAA
1 AAATAAA-TGAGATAAA
4669803 GAAGACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 3 0.11
16 5 0.18
17 13 0.46
18 1 0.04
19 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.24
Consensus pattern (17 bp):
AAATAAATGAGATAAAA
Found at i:4670634 original size:75 final size:71
Alignment explanation
Indices: 4670549--4670692 Score: 234
Period size: 75 Copynumber: 2.0 Consensus size: 71
4670539 ATAAATAAAA
4670549 TAAATCCTAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAA
1 TAAATCCTAATTAAAATACTTAAAACTATTTAAACTAAAATACCT---A-AAAGATAAGATAAAA
4670614 AATAATATCC
62 AATAATATCC
* *
4670624 TAAATCCTAATTAAAATACTTAAAACTATTTAAACTAAAATTCCTAAAAGATAAGATAAAATATA
1 TAAATCCTAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAAGATAAGATAAAAAATA
4670689 ATAT
66 ATAT
4670693 TTAAAATAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
71 22 0.33
72 1 0.01
75 44 0.66
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (71 bp):
TAAATCCTAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAAGATAAGATAAAAAATA
ATATCC
Found at i:4674165 original size:194 final size:194
Alignment explanation
Indices: 4673808--4674196 Score: 562
Period size: 194 Copynumber: 2.0 Consensus size: 194
4673798 CTTGTATCAC
* * *
4673808 ATAGTATCAGATACAATAATAAGGTCATATGAATACACATACACAGTAAAGTTGTAGTATTTTAC
1 ATAGTATCAGATACAATAATAAGGTCATATGAATACACATACACACTAAAGCTGTAGTATTATAC
* ** * *
4673873 TCTGAAGGGGGATGTTGAAAGTCCTACCATGACGATGCTCTTCAAACTGCCCAATCTATAGACCT
66 TCTAAAGGGGGATGTTGAAAGTCCTACCACCACAATGCTCCTCAAACTGCCCAATCTATAGACCT
* * * * * * *
4673938 GCCAAGGAAAAACATCTGAATGCTGAGCTTACAAAGCCCATCAGTATAATCTCTAATCTAGAGA
131 ACCAACGAAAAACATCCGAAGGCTAAGCTTACAAAGCCCAACAGTATAATCTCTAATCTAAAGA
* * *
4674002 ATAGTATCAGATACAATAATAAGGTCCTATGAATACATATGCACACTAAAGCTGTAGTATTATAC
1 ATAGTATCAGATACAATAATAAGGTCATATGAATACACATACACACTAAAGCTGTAGTATTATAC
* * *
4674067 TCTAAAGGGGGATGTTGGAAGTTCTACCACCACAATGCTCCTCAAACTGCCCAATTTATAGACCT
66 TCTAAAGGGGGATGTTGAAAGTCCTACCACCACAATGCTCCTCAAACTGCCCAATCTATAGACCT
* * *
4674132 ACCATCGAAAAATATCCGAAGGCTAATCTTACAAAGCCCAACAGTATAATCTCTAATCTAAAGA
131 ACCAACGAAAAACATCCGAAGGCTAAGCTTACAAAGCCCAACAGTATAATCTCTAATCTAAAGA
4674196 A
1 A
4674197 GTGTAAGAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
194 171 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (194 bp):
ATAGTATCAGATACAATAATAAGGTCATATGAATACACATACACACTAAAGCTGTAGTATTATAC
TCTAAAGGGGGATGTTGAAAGTCCTACCACCACAATGCTCCTCAAACTGCCCAATCTATAGACCT
ACCAACGAAAAACATCCGAAGGCTAAGCTTACAAAGCCCAACAGTATAATCTCTAATCTAAAGA
Found at i:4674466 original size:32 final size:31
Alignment explanation
Indices: 4674372--4674467 Score: 88
Period size: 32 Copynumber: 3.0 Consensus size: 31
4674362 TAATTTCTAC
* *
4674372 TCATTATCTAAATGCGACACTGAGATTCTTG-
1 TCATTATCTAAATGCAACACTGA-ATTATTGT
* *
4674403 TCTATTATCTGAATGCAA-ACCTGATTGTATTGT
1 TC-ATTATCTAAATGCAACA-CTGAAT-TATTGT
*
4674436 TCATTATCTAAATGCAACACTGACTCTATTGT
1 TCATTATCTAAATGCAACACTGAAT-TATTGT
4674468 GGTAATATCT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
31 4 0.08
32 46 0.87
33 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (31 bp):
TCATTATCTAAATGCAACACTGAATTATTGT
Found at i:4678109 original size:3 final size:3
Alignment explanation
Indices: 4678101--4678180 Score: 108
Period size: 3 Copynumber: 27.0 Consensus size: 3
4678091 ATTAATTTAT
* * * * *
4678101 TTA TTA TTA TTA TAA TTA TAA TTA TTA TTA TAA TTA TTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4678149 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4678181 AATATATATA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
2 2 0.03
3 64 0.97
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:4678596 original size:20 final size:20
Alignment explanation
Indices: 4678571--4678615 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4678561 TCTGCGAACA
*
4678571 AGAGAAGAAAACAGAGAGAC
1 AGAGAACAAAACAGAGAGAC
* *
4678591 AGAGAACAACAGAGAGAGAC
1 AGAGAACAAAACAGAGAGAC
*
4678611 GGAGA
1 AGAGA
4678616 CCACACAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.11, G:0.33, T:0.00
Consensus pattern (20 bp):
AGAGAACAAAACAGAGAGAC
Found at i:4678703 original size:15 final size:15
Alignment explanation
Indices: 4678683--4678724 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
4678673 ACAACACAGC
4678683 AAAGAAACAG-AAAAG
1 AAAGAAA-AGAAAAAG
4678698 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAG
*
4678713 AAAGAAGAGAAA
1 AAAGAAAAGAAA
4678725 CTTACTCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 2 0.08
15 23 0.92
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAG
Found at i:4678708 original size:20 final size:20
Alignment explanation
Indices: 4678683--4678724 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4678673 ACAACACAGC
*
4678683 AAAGAAACAGAAAAGAA-AGA
1 AAAGAAAAAG-AAAGAAGAGA
4678703 AAAGAAAAAGAAAGAAGAGA
1 AAAGAAAAAGAAAGAAGAGA
4678723 AA
1 AA
4678725 CTTACTCTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAGAAAGAAGAGA
Found at i:4680329 original size:24 final size:25
Alignment explanation
Indices: 4680288--4680338 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
4680278 AATTTATAAT
4680288 TTTTTATATATATATATACATATTA
1 TTTTTATATATATATATACATATTA
*
4680313 TTTTTATAGTAT-T-TATATATATTA
1 TTTTTATA-TATATATATACATATTA
4680337 TT
1 TT
4680339 AATATTACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 12 0.50
25 9 0.38
26 3 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTTATATATATATATACATATTA
Found at i:4690992 original size:19 final size:19
Alignment explanation
Indices: 4690968--4691004 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4690958 TTATGCTTGA
4690968 AGAAAAA-AAAAGAGAAAAG
1 AGAAAAAGAAAA-AGAAAAG
4690987 AGAAAAAGAAAAAGAAAA
1 AGAAAAAGAAAAAGAAAA
4691005 AGGGGGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
AGAAAAAGAAAAAGAAAAG
Found at i:4690998 original size:6 final size:6
Alignment explanation
Indices: 4690967--4691006 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
4690957 ATTATGCTTG
4690967 AAGAAA AA-AAA AGAGAAA AGAGAAA AAGAAA AAGAAA AAG
1 AAGAAA AAGAAA A-AGAAA A-AGAAA AAGAAA AAGAAA AAG
4691007 GGGGTCAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 4 0.12
6 17 0.53
7 11 0.34
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:4692285 original size:83 final size:83
Alignment explanation
Indices: 4692146--4692493 Score: 599
Period size: 83 Copynumber: 4.2 Consensus size: 83
4692136 ATTGGAACAA
*
4692146 ATGAATGTACTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
4692211 AATCATTGAATTTGAAAG
66 AATCATTGAATTTGAAAG
*
4692229 ATGAATGTGCTCATAGTATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
* *
4692294 AGTTATTGAATTTGAAAG
66 AATCATTGAATTTGAAAG
* *
4692312 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
*
4692377 AATCATTGAAATTGAAAG
66 AATCATTGAATTTGAAAG
4692395 ATGAATGTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAAC
1 ATGAATGTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAAC
*
4692459 CAATCATTGAATTTAAAAG
65 CAATCATTGAATTTGAAAG
*
4692478 ATGAATTTGCTCATAG
1 ATGAATGTGCTCATAG
4692494 TAAAAATAAG
Statistics
Matches: 248, Mismatches: 15, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
82 1 0.00
83 246 0.99
84 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (83 bp):
ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
AATCATTGAATTTGAAAG
Found at i:4693661 original size:113 final size:113
Alignment explanation
Indices: 4693284--4694052 Score: 1012
Period size: 113 Copynumber: 6.8 Consensus size: 113
4693274 GCAAAAATTT
* * ****
4693284 AAATTCATCACTTGATAGATTAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
4693349 AAGGATGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * **** *
4693397 AAATCTATCACTTGATAGATTAGCTTTTCCAGTTCGAGCTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
4693462 AAGGATG-A-AAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * ****
4693508 AAATCTATCACTTGATAGATTAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
4693573 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTATTCAACCTTTTGCCC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* *
4693621 AAATCCATCACTTGAT-GAATCAGCTTTTCTAGAGAAAGTTCATAATAAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATAG-ATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
** * * *
4693685 GAATAAAGAAGAAGTTCATAATGAGAATAATTTATTCAATCTTTTGCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * *
4693734 AAATACATCACTTGATGGATCCGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* * *
4693799 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGTTT
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * * * * * * * *
4693847 GAATTCATCATTTGATGGATCAACATTCCCAGATAGAGTTCACAATGAGAAGAACTCATCATCTG
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAA--C-TCATCTG
*
4693912 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTC
63 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
4693963 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---G
1 AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
4694025 AA-GAAGAAGAAGTTCATAATGAGAAGAA
66 AAGGAAGAAGAAGTTCATAATGAGAAGAA
4694053 CTAATCTGAA
Statistics
Matches: 592, Mismatches: 57, Indels: 18
0.89 0.09 0.03
Matches are distributed among these distances:
109 26 0.04
110 3 0.01
111 106 0.18
112 3 0.01
113 351 0.59
114 2 0.00
115 1 0.00
116 100 0.17
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (113 bp):
AAATCCATCACTTGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:4694045 original size:36 final size:36
Alignment explanation
Indices: 4693998--4694087 Score: 144
Period size: 36 Copynumber: 2.5 Consensus size: 36
4693988 TTTCCAGAGA
* *
4693998 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
4694034 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
1 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
* *
4694070 AAGTTCACAATGAAAAGA
1 AAGTTCATAATGAGAAGA
4694088 GCTTGTTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.19
Consensus pattern (36 bp):
AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
Found at i:4694347 original size:3 final size:3
Alignment explanation
Indices: 4694339--4694417 Score: 122
Period size: 3 Copynumber: 26.3 Consensus size: 3
4694329 ATTAATTTAT
* *
4694339 TTA TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
4694387 TAA ATA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
4694418 ATGAAATATA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:4694836 original size:20 final size:20
Alignment explanation
Indices: 4694811--4694855 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4694801 TCTGCGAACA
*
4694811 AGAGAAGAAAACAGAGAGAC
1 AGAGAACAAAACAGAGAGAC
* *
4694831 AGAGAACAACAGAGAGAGAC
1 AGAGAACAAAACAGAGAGAC
*
4694851 GGAGA
1 AGAGA
4694856 CCACACAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.11, G:0.33, T:0.00
Consensus pattern (20 bp):
AGAGAACAAAACAGAGAGAC
Found at i:4694943 original size:15 final size:15
Alignment explanation
Indices: 4694923--4694964 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
4694913 ACAACACAGC
4694923 AAAGAAACA-AAAAAG
1 AAAGAAA-AGAAAAAG
4694938 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAG
*
4694953 AAAGAATAGAAA
1 AAAGAAAAGAAA
4694965 CTTACTCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 1 0.04
15 24 0.96
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (15 bp):
AAAGAAAAGAAAAAG
Found at i:4694948 original size:20 final size:20
Alignment explanation
Indices: 4694923--4694964 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
4694913 ACAACACAGC
4694923 AAAGAAACAAAAAAGAA-AGA
1 AAAGAAA-AAAAAAGAATAGA
*
4694943 AAAGAAAAAGAAAGAATAGA
1 AAAGAAAAAAAAAGAATAGA
4694963 AA
1 AA
4694965 CTTACTCTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (20 bp):
AAAGAAAAAAAAAGAATAGA
Found at i:4699621 original size:21 final size:21
Alignment explanation
Indices: 4699595--4699639 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
4699585 TCTTGTAACT
4699595 TAGGTGACAATGACATATTGC
1 TAGGTGACAATGACATATTGC
*
4699616 TAGGTGACAATGATATATTGC
1 TAGGTGACAATGACATATTGC
4699637 TAG
1 TAG
4699640 ATGTCACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.31
Consensus pattern (21 bp):
TAGGTGACAATGACATATTGC
Found at i:4700506 original size:16 final size:15
Alignment explanation
Indices: 4700481--4700512 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
4700471 AACAATCAAA
4700481 TTTTTTTCTTTTTCT
1 TTTTTTTCTTTTTCT
4700496 TTTTCTTTCTTTTTCT
1 TTTT-TTTCTTTTTCT
4700512 T
1 T
4700513 GCCATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTTTCT
Found at i:4705025 original size:45 final size:45
Alignment explanation
Indices: 4704975--4705236 Score: 380
Period size: 45 Copynumber: 5.8 Consensus size: 45
4704965 ATTCTAACAT
* * *
4704975 CTTTTCTATTGATAATGCACCCATATGCATTTCAACTATAGTATA
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
* *
4705020 CTTTTCTGTTGATAATGTATCCATATACATTTCAACCATAGTATA
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
* * *
4705065 CTTTCCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATA
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
* * * * *
4705110 CATTTCTGTTGATAATGTACCCATATGCATTTTAACTCTAGCATA
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
*
4705155 CTTTTCTGTTGATAATGTACCCATATACATTTCAACCATAGTATA
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
* *
4705200 CTTTTTTGTTGATAATGTACCCATATACATTTTAACT
1 CTTTTCTGTTGATAATGTACCCATATACATTTCAACT
4705237 GTGGCATCAT
Statistics
Matches: 194, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 194 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (45 bp):
CTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAGTATA
Found at i:4705169 original size:135 final size:134
Alignment explanation
Indices: 4704967--4705275 Score: 456
Period size: 135 Copynumber: 2.3 Consensus size: 134
4704957 CACTTTAAAT
* * * *
4704967 TCTAACATCTTTTCTATTGATAATGCACCCATATGCATTTCAACTATAGTATACTTTTCTGTTGA
1 TCTAGCATCATTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTGTTGA
*
4705032 TAATGTATCCATATACATTTCAACCATAGTATACTTTCCTGTTGATAATGTACCCATATACATTT
66 TAATGTACCCATATACATTTCAACCATAGTATACTTTCCTGTTGATAATGTACCCATATACATTT
4705097 CAAC
131 CAAC
* * *
4705101 TCTAGCATACATTTCTGTTGATAATGTACCCATATGCATTTTAACTCTAGCATACTTTTCTGTTG
1 TCTAGCAT-CATTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTGTTG
**
4705166 ATAATGTACCCATATACATTTCAACCATAGTATACTTTTTTGTTGATAATGTACCCATATACATT
65 ATAATGTACCCATATACATTTCAACCATAGTATACTTTCCTGTTGATAATGTACCCATATACATT
*
4705231 TTAAC
130 TCAAC
* * ***
4705236 TGTGGCATCATTTCATGCCAATAATGCACCCATATGCATT
1 TCTAGCATCATTTC-TGTTGATAATGCACCCATATGCATT
4705276 AGTATTTTCA
Statistics
Matches: 156, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
134 13 0.08
135 143 0.92
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (134 bp):
TCTAGCATCATTTCTGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTGTTGA
TAATGTACCCATATACATTTCAACCATAGTATACTTTCCTGTTGATAATGTACCCATATACATTT
CAAC
Found at i:4705260 original size:90 final size:89
Alignment explanation
Indices: 4704972--4705275 Score: 351
Period size: 90 Copynumber: 3.4 Consensus size: 89
4704962 TAAATTCTAA
* * * *
4704972 CATCTTTTCTATTGATAATGCACCCATATGCATTTCAACTATAGTATACTTTTCTGTTGATAATG
1 CATCATTTCTGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAATG
* * *
4705037 TATCCATATACATTTCAACCATAG
66 TACCCATATACATTTTAACTATAG
* * * *
4705061 TAT-ACTTTCCTGTTGATAATGTACCCATATACATTTCAACTC-TAGCATACATTTCTGTTGATA
1 CATCA-TTT-CTGTTGATAATGCACCCATATACATTTCAAC-CATAGTATACTTTTCTGTTGATA
* *
4705124 ATGTACCCATATGCATTTTAACTCTAG
63 ATGTACCCATATACATTTTAACTATAG
* * *
4705151 CATACTTTTCTGTTGATAATGTACCCATATACATTTCAACCATAGTATACTTTTTTGTTGATAAT
1 CAT-CATTTCTGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAAT
* *
4705216 GTACCCATATACATTTTAACTGTGG
65 GTACCCATATACATTTTAACTATAG
*** *
4705241 CATCATTTCATGCCAATAATGCACCCATATGCATT
1 CATCATTTC-TGTTGATAATGCACCCATATACATT
4705276 AGTATTTTCA
Statistics
Matches: 181, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
89 11 0.06
90 167 0.92
91 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (89 bp):
CATCATTTCTGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAATG
TACCCATATACATTTTAACTATAG
Found at i:4705870 original size:97 final size:95
Alignment explanation
Indices: 4705689--4705875 Score: 230
Period size: 97 Copynumber: 1.9 Consensus size: 95
4705679 TATTACCCTA
* * *
4705689 CTATGGTATTGATACCCCCTTCCAGTATCAATGCCAAAATTAGCTTCGATGTAGCCAGGTATAGA
1 CTATGGTATTGATACCCCCTTCCAGCATCAATACCAAAAATAGCTTCGATGTAGCCAGGTATAGA
4705754 TACCCTCACTATGGTATCGATACTAATATG
66 TACCCTCACTATGGTATCGATACTAATATG
* * * * ** ** *
4705784 CTATGGTATTGATACCCCCTTTCGGCATCGATACCAAAAATAGGTTTTCGATGTTTCCTTGTATT
1 CTATGGTATTGATACCCCCTTCCAGCATCAATACCAAAAATA-G-CTTCGATGTAGCCAGGTATA
* *
4705849 GATACCCTTATTATGGTATCGATACTA
64 GATACCCTCACTATGGTATCGATACTA
4705876 CATCGATTGG
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 36 0.47
96 1 0.01
97 39 0.51
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (95 bp):
CTATGGTATTGATACCCCCTTCCAGCATCAATACCAAAAATAGCTTCGATGTAGCCAGGTATAGA
TACCCTCACTATGGTATCGATACTAATATG
Found at i:4711974 original size:45 final size:45
Alignment explanation
Indices: 4711914--4712179 Score: 372
Period size: 45 Copynumber: 5.9 Consensus size: 45
4711904 TAAATTCTAA
* * * *
4711914 TATA-TTTTATGTTGATAATGCACCTATATGCATTTCAACTATAG
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
* *
4711958 TATACTTTTCTATTGATAATGTACCCATATACATTTCAACCATAG
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
* * *
4712003 TATACTTTCCTGTTGATTATGTACCCATATACATTTCAACTCTAG
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
* * * *
4712048 CATACATTTCTGTTGATAATGTACCCATATGCATTTCAACTCTAG
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
* * *
4712093 CATACTTTTCTGTTGATAATGTACCCATATACATTTCAACCATAA
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
*
4712138 TATACTTTTCTGTTGATAATGTACCCATATGCATTTCAACTA
1 TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTA
4712180 CGGTATCCTT
Statistics
Matches: 197, Mismatches: 24, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
44 4 0.02
45 193 0.98
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (45 bp):
TATACTTTTCTGTTGATAATGTACCCATATACATTTCAACTATAG
Found at i:4712114 original size:135 final size:135
Alignment explanation
Indices: 4711923--4712178 Score: 431
Period size: 135 Copynumber: 1.9 Consensus size: 135
4711913 ATATATTTTA
* *
4711923 TGTTGATAATGCACCTATATGCATTTCAACTATAGTATACTTTTCTATTGATAATGTACCCATAT
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATAT
* *
4711988 ACATTTCAACCATAGTATACTTTCCTGTTGATTATGTACCCATATACATTTCAACTCTAGCATAC
66 ACATTTCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATAC
4712053 ATTTC
131 ATTTC
* * *
4712058 TGTTGATAATGTACCCATATGCATTTCAACTCTAGCATACTTTTCTGTTGATAATGTACCCATAT
1 TGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATAT
* *
4712123 ACATTTCAACCATAATATACTTTTCTGTTGATAATGTACCCATATGCATTTCAACT
66 ACATTTCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACT
4712179 ACGGTATCCT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
135 112 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (135 bp):
TGTTGATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATAT
ACATTTCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATAC
ATTTC
Found at i:4712202 original size:90 final size:89
Alignment explanation
Indices: 4711923--4712217 Score: 333
Period size: 90 Copynumber: 3.3 Consensus size: 89
4711913 ATATATTTTA
* * * *
4711923 TGTTGATAATGCACCTATATGCATTTCAACTATAGTATACTTTTCTATTGATAATGTACCCATAT
1 TGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAATGTACCCATAT
* * * *
4711988 ACATTTCAACCATAGTATACTTTCC
66 GCATTTCAACTACAGTATCCTTT-C
* * * *
4712013 TGTTGATTATGTACCCATATACATTTCAACTC-TAGCATACATTTCTGTTGATAATGTACCCATA
1 TGTTGATAATGCACCCATATACATTTCAAC-CATAGTATACTTTTCTGTTGATAATGTACCCATA
* *
4712077 TGCATTTCAACT-CTAGCATACTTTTC
65 TGCATTTCAACTAC-AGTAT-CCTTTC
* *
4712103 TGTTGATAATGTACCCATATACATTTCAACCATAATATACTTTTCTGTTGATAATGTACCCATAT
1 TGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAATGTACCCATAT
* *
4712168 GCATTTCAACTACGGTATCCTTGC
66 GCATTTCAACTACAGTATCCTTTC
*** *
4712192 ATGCCAATAATGCACCCATATGCATT
1 -TGTTGATAATGCACCCATATACATT
4712218 AGTATTTTCA
Statistics
Matches: 172, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
89 5 0.03
90 163 0.95
91 4 0.02
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (89 bp):
TGTTGATAATGCACCCATATACATTTCAACCATAGTATACTTTTCTGTTGATAATGTACCCATAT
GCATTTCAACTACAGTATCCTTTC
Found at i:4712202 original size:135 final size:135
Alignment explanation
Indices: 4711928--4712217 Score: 404
Period size: 135 Copynumber: 2.1 Consensus size: 135
4711918 TTTTATGTTG
* *
4711928 ATAATGCACCTATATGCATTTCAACTATAGTATACTTTTCTATTGATAATGTACCCATATACATT
1 ATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATATACATT
* * *
4711993 TCAACCATAGTATACTTTCCTGTTGATTATGTACCCATATACATTTCAACTCTAGCATACATTTC
66 TCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATACATTGC
***
4712058 TGTTG
131 TGCCA
* * *
4712063 ATAATGTACCCATATGCATTTCAACTCTAGCATACTTTTCTGTTGATAATGTACCCATATACATT
1 ATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATATACATT
* * * * *
4712128 TCAACCATAATATACTTTTCTGTTGATAATGTACCCATATGCATTTCAACTAC-GGTAT-CCTTG
66 TCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACT-CTAGCATACATTG
4712191 CATGCCA
130 C-TGCCA
4712198 ATAATGCACCCATATGCATT
1 ATAATGCACCCATATGCATT
4712218 AGTATTTTCA
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
134 4 0.03
135 131 0.96
136 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (135 bp):
ATAATGCACCCATATGCATTTCAACTATAGCATACTTTTCTATTGATAATGTACCCATATACATT
TCAACCATAATATACTTTCCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATACATTGC
TGCCA
Found at i:4712633 original size:20 final size:21
Alignment explanation
Indices: 4712608--4712664 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
4712598 TGGCTCTTCA
4712608 GTATCGATACA-CCTACTATG
1 GTATCGATACACCCTACTATG
*
4712628 GTATCGATATTACCCTACTATG
1 GTATCGATA-CACCCTACTATG
*
4712650 GTATCGATACTCCCT
1 GTATCGATACACCCT
4712665 TCCAGTATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.28
21 5 0.16
22 18 0.56
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (21 bp):
GTATCGATACACCCTACTATG
Found at i:4712754 original size:95 final size:95
Alignment explanation
Indices: 4712608--4712807 Score: 251
Period size: 95 Copynumber: 2.1 Consensus size: 95
4712598 TGGCTCTTCA
* * *
4712608 GTATCGATACACCTACTATGGTATCGATATTACCCTACTATGGTATCGATACTCCCTTCCAGTAT
1 GTATCGATACACCTACTATGGTATCGATACTACCATACTATGGTATCGATACCCCCTTCCAGTAT
*
4712673 CAATACCAAAATTAGCTTCGATGTAGCCTG
66 CAATACCAAAATCAGCTTCGATGTAGCCTG
* ** * *
4712703 GTATCGATAC-CCTCACTATGGTATCGATACTACTATGTTATGGTA-CTGATACCCCCTTTCGGT
1 GTATCGATACACCT-ACTATGGTATCGATACTACCATACTATGGTATC-GATACCCCCTTCCAGT
* * **
4712766 ATCGATACCAAAATCAGGTTCGATGTTTCCTG
64 ATCAATACCAAAATCAGCTTCGATGTAGCCTG
4712798 GTATCGATAC
1 GTATCGATAC
4712808 TACATTGCTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
94 4 0.04
95 86 0.96
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (95 bp):
GTATCGATACACCTACTATGGTATCGATACTACCATACTATGGTATCGATACCCCCTTCCAGTAT
CAATACCAAAATCAGCTTCGATGTAGCCTG
Found at i:4716460 original size:12 final size:12
Alignment explanation
Indices: 4716443--4716478 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
4716433 AAGTGTTCTG
4716443 TAGCGGCATTTT
1 TAGCGGCATTTT
*
4716455 TAGCGGCGTTTT
1 TAGCGGCATTTT
4716467 TAGCGGCATTTT
1 TAGCGGCATTTT
4716479 AAGGACAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.17, G:0.28, T:0.42
Consensus pattern (12 bp):
TAGCGGCATTTT
Found at i:4716684 original size:41 final size:41
Alignment explanation
Indices: 4716545--4716764 Score: 139
Period size: 41 Copynumber: 5.3 Consensus size: 41
4716535 AAAATGATAC
* *
4716545 TTTAGCGGCGTTTTTTAAACAAACGCCACAATAGAGTGATAA
1 TTTAGCGGCGTTTTTT-AACAAACGCCGCAATAGAGTTATAA
* * * **
4716587 TTTCGCGGCG-TTTATAGCTAAAACGCCGCAATAGA--TATGT
1 TTTAGCGGCGTTTTTTAAC--AAACGCCGCAATAGAGTTATAA
* * *
4716627 TTATAGTGGTGTTTTTTCAACAAACGCCGTAATAGAGTTATAA
1 TT-TAGCGGCGTTTTTT-AACAAACGCCGCAATAGAGTTATAA
* * *
4716670 TTTAGCGGCG-TTTTTACACAAACGCCGCGATAGTGTTGT--
1 TTTAGCGGCGTTTTTTA-ACAAACGCCGCAATAGAGTTATAA
* * * * * *
4716709 TTATAGTGGCATTTGTTTAATAAACGACGCTATAGAG-AAGTAA
1 TT-TAGCGGCGTTT-TTTAACAAACGCCGCAATAGAGTTA-TAA
4716752 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
4716765 ATCAAATAAA
Statistics
Matches: 133, Mismatches: 31, Indels: 28
0.69 0.16 0.15
Matches are distributed among these distances:
39 2 0.02
40 13 0.10
41 63 0.47
42 46 0.35
43 9 0.07
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAACAAACGCCGCAATAGAGTTATAA
Found at i:4716744 original size:82 final size:81
Alignment explanation
Indices: 4716551--4716807 Score: 227
Period size: 83 Copynumber: 3.1 Consensus size: 81
4716541 ATACTTTAGC
* * ** * * *
4716551 GGCGTTT-TTTAAACAAACGCCACAATAGAGTGATAATTTCGCGGCGTTTATAGCTAAAACGCCG
1 GGCGTTTGTTTCAACAAACGACGTAATAGAGTAATAATTTAGCGGCGTTTTTA-C-AAAACGCCG
*
4716615 CAATAGATATGTTTATAGT
64 CAATAG-TTTGTTTATAGT
* * *
4716634 GGTGTTT-TTTCAACAAACGCCGTAATAGAGTTATAATTTAGCGGCGTTTTTACACAAACGCCGC
1 GGCGTTTGTTTCAACAAACGACGTAATAGAGTAATAATTTAGCGGCGTTTTTACA-AAACGCCGC
*
4716698 GATAGTGTTGTTTATAGT
65 AATAGT-TTGTTTATAGT
* * * * *
4716716 GGCATTTGTTT-AATAAACGACGCT-ATAGAG-AAGTAATTTAGCGGCGTTTATCAAATAAACAC
1 GGCGTTTGTTTCAACAAACGACG-TAATAGAGTAA-TAATTTAGCGGCGTTT-TTACA-AAACGC
*
4716778 CGCAATATTATTGTTTATAGT
62 CGCAATAGT-TTGTTTATAGT
4716799 GGCGTTTGT
1 GGCGTTTGT
4716808 GTAAAAAATA
Statistics
Matches: 146, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
81 3 0.02
82 60 0.41
83 83 0.57
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (81 bp):
GGCGTTTGTTTCAACAAACGACGTAATAGAGTAATAATTTAGCGGCGTTTTTACAAAACGCCGCA
ATAGTTTGTTTATAGT
Found at i:4716827 original size:83 final size:82
Alignment explanation
Indices: 4716667--4716828 Score: 191
Period size: 83 Copynumber: 2.0 Consensus size: 82
4716657 AATAGAGTTA
* * * * * *
4716667 TAATTTAGCGGCGTTTTTACACAAACGCCGCGATAGTGTTGTTTATAGTGGCATTTGTTTAATAA
1 TAATTTAGCGGCGTTTTCAAACAAACACCGCAATAGTATTGTTTATAGTGGCATTTGTGTAATAA
* *
4716732 ACGACGCTATAGAGAAG
66 AAGACGCAATAGAGAAG
* * *
4716749 TAATTTAGCGGCGTTTATCAAATAAACACCGCAATATTATTGTTTATAGTGGCGTTTGTGTAA-A
1 TAATTTAGCGGCGTTT-TCAAACAAACACCGCAATAGTATTGTTTATAGTGGCATTTGTGTAATA
*
4716813 AAATATCGCAATAGAG
65 AAAGA-CGCAATAGAG
4716829 TAATAATATA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
82 20 0.30
83 46 0.70
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (82 bp):
TAATTTAGCGGCGTTTTCAAACAAACACCGCAATAGTATTGTTTATAGTGGCATTTGTGTAATAA
AAGACGCAATAGAGAAG
Found at i:4718389 original size:42 final size:41
Alignment explanation
Indices: 4718287--4718388 Score: 150
Period size: 42 Copynumber: 2.5 Consensus size: 41
4718277 AAGGTAATTA
*
4718287 GCGGCGTTTGTATCAAAAACGCCGCCATAGACCTAACTTTT
1 GCGGCGTTTGTATCAAAAACGCCGCCATAGACATAACTTTT
* * *
4718328 GCTGCATTTGTATCCAAAAACGCCGCTATAGACATAACTTTT
1 GCGGCGTTTGTAT-CAAAAACGCCGCCATAGACATAACTTTT
*
4718370 GCGGCGTTTGTATAAAAAA
1 GCGGCGTTTGTATCAAAAA
4718389 AAACGCCACA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
41 16 0.30
42 37 0.70
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
GCGGCGTTTGTATCAAAAACGCCGCCATAGACATAACTTTT
Found at i:4721097 original size:2 final size:2
Alignment explanation
Indices: 4721090--4721127 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4721080 GAGTTATTCA
4721090 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4721128 TTACAATTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4727120 original size:43 final size:44
Alignment explanation
Indices: 4727038--4727177 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
4727028 ATATTAAAAT
* * * *
4727038 CTATTGCGGCGTTTGTAT-C-ACAAAATGCCGCTATGTACCAA-C
1 CTATAGCGGCATTTGTATCCTA-AAAACGCCGCTATATACCAAGC
* * ** *
4727080 TTTTAGCGGTGTTTGTATCCTAAAAACGTCGCTATATACCAAGC
1 CTATAGCGGCATTTGTATCCTAAAAACGCCGCTATATACCAAGC
* *
4727124 CTATCGCGGCATTTGTATCCTAAAAACGCCGCTAAATACCATA-C
1 CTATAGCGGCATTTGTATCCTAAAAACGCCGCTATATACCA-AGC
*
4727168 CTATTGCGGC
1 CTATAGCGGC
4727178 GTTTTCATAA
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 14 0.18
43 18 0.23
44 46 0.58
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (44 bp):
CTATAGCGGCATTTGTATCCTAAAAACGCCGCTATATACCAAGC
Found at i:4727146 original size:44 final size:44
Alignment explanation
Indices: 4727091--4727177 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
4727081 TTTAGCGGTG
* *
4727091 TTTGTATCCTAAAAACGTCGCTATATACCA-AGCCTATCGCGGCA
1 TTTGTATCCTAAAAACGCCGCTAAATACCATA-CCTATCGCGGCA
*
4727135 TTTGTATCCTAAAAACGCCGCTAAATACCATACCTATTGCGGC
1 TTTGTATCCTAAAAACGCCGCTAAATACCATACCTATCGCGGC
4727178 GTTTTCATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 38 0.97
45 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (44 bp):
TTTGTATCCTAAAAACGCCGCTAAATACCATACCTATCGCGGCA
Found at i:4727301 original size:43 final size:43
Alignment explanation
Indices: 4727145--4727302 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
4727135 TTTGTATCCT
* *
4727145 AAAAACGCCGCTAAATACCA-TACCTATTGCGGCGTTTTCATAAA
1 AAAAACGCCGCTAAATATCAGCACCTATTGCGGCGTTTT--TAAA
* * * * * * * *
4727189 AAAAATGCCACGAAATATCAACACTTATTGCGGCGTTTGTGAT
1 AAAAACGCCGCTAAATATCAGCACCTATTGCGGCGTTTTTAAA
* * * *
4727232 AAAAACGCCTCTAAATAT-TGACACCTATTACGGCGTTTTTAAG
1 AAAAACGCCGCTAAATATCAG-CACCTATTGCGGCGTTTTTAAA
* *
4727275 ACAAACGCCGCTAAATATCAGTACCTAT
1 AAAAACGCCGCTAAATATCAGCACCTAT
4727303 ATATCGTTAC
Statistics
Matches: 88, Mismatches: 23, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
43 56 0.64
44 17 0.19
45 15 0.17
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
AAAAACGCCGCTAAATATCAGCACCTATTGCGGCGTTTTTAAA
Found at i:4729060 original size:15 final size:15
Alignment explanation
Indices: 4729042--4729099 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
4729032 TTTTTATTCG
4729042 ATTTACATTTATGTT
1 ATTTACATTTATGTT
* *
4729057 ATTTACATTAATG-C
1 ATTTACATTTATGTT
** *
4729071 ACTTTATTTTTCTGTT
1 A-TTTACATTTATGTT
4729087 ATTTACATTTATG
1 ATTTACATTTATG
4729100 CCCTTTAAGT
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
14 1 0.03
15 29 0.94
16 1 0.03
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (15 bp):
ATTTACATTTATGTT
Found at i:4729113 original size:30 final size:30
Alignment explanation
Indices: 4729053--4729113 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
4729043 TTTACATTTA
**
4729053 TGTTATTTACATTAATGCACTTTATTTTTC
1 TGTTATTTACATTAATGCACTTTAAGTTTC
* *
4729083 TGTTATTTACATTTATGCCCTTTAAGTTTC
1 TGTTATTTACATTAATGCACTTTAAGTTTC
4729113 T
1 T
4729114 ATCATTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (30 bp):
TGTTATTTACATTAATGCACTTTAAGTTTC
Found at i:4729121 original size:30 final size:30
Alignment explanation
Indices: 4729057--4729126 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
4729047 CATTTATGTT
* ** * *
4729057 ATTTACATTAATGCACTTTATTTTTCTGTT
1 ATTTACATTTATGCACTTTAAGTTTCTATC
*
4729087 ATTTACATTTATGCCCTTTAAGTTTCTATC
1 ATTTACATTTATGCACTTTAAGTTTCTATC
*
4729117 ATTTAAATTT
1 ATTTACATTT
4729127 CAGTTCTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (30 bp):
ATTTACATTTATGCACTTTAAGTTTCTATC
Found at i:4739720 original size:22 final size:23
Alignment explanation
Indices: 4739695--4739743 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
4739685 TTAATCACGG
* *
4739695 AAGTGT-CTTAGCACTAATACTA
1 AAGTGTCCTTAACACTAATACAA
*
4739717 AAGT-TCCTTAACACTAGTACAA
1 AAGTGTCCTTAACACTAATACAA
4739739 AAGTG
1 AAGTG
4739744 CATACTCACC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (23 bp):
AAGTGTCCTTAACACTAATACAA
Found at i:4740298 original size:18 final size:20
Alignment explanation
Indices: 4740254--4740302 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
4740244 ACTATATTAG
*
4740254 GAGTATCGATACTCTACCTT
1 GAGTATCGATAATCTACCTT
*
4740274 TAGTATCGATAATC-ACC-T
1 GAGTATCGATAATCTACCTT
4740292 GAGTATCGATA
1 GAGTATCGATA
4740303 CCTAAAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 11 0.42
19 3 0.12
20 12 0.46
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (20 bp):
GAGTATCGATAATCTACCTT
Found at i:4740398 original size:18 final size:19
Alignment explanation
Indices: 4740359--4740399 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
4740349 TGCCCTTGTG
4740359 ATTATCGATACCCACTATGA
1 ATTATCGATACCCAC-ATGA
*
4740379 ATTATTGATACCCA-ATGA
1 ATTATCGATACCCACATGA
4740397 ATT
1 ATT
4740400 CAATATCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
20 13 0.65
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (19 bp):
ATTATCGATACCCACATGA
Found at i:4740911 original size:15 final size:15
Alignment explanation
Indices: 4740888--4740921 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4740878 TTTGAAGAGG
*
4740888 AAGAAGAAGGAGGAA
1 AAGAAGAAGGAGAAA
*
4740903 AAGATGAAGGAGAAA
1 AAGAAGAAGGAGAAA
4740918 AAGA
1 AAGA
4740922 CAAAGAGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (15 bp):
AAGAAGAAGGAGAAA
Found at i:4741850 original size:23 final size:24
Alignment explanation
Indices: 4741811--4741861 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
4741801 TAGCCGCAAT
* *
4741811 GTAATTTTTTAATTTTATATTTTA
1 GTAATTTTTTAAATTTATATTTGA
4741835 GTAA-TTTTTAAATTTATATTTGA
1 GTAATTTTTTAAATTTATATTTGA
4741858 GTAA
1 GTAA
4741862 ATTTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (24 bp):
GTAATTTTTTAAATTTATATTTGA
Found at i:4744014 original size:20 final size:20
Alignment explanation
Indices: 4743965--4744017 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
4743955 AAAATAACTG
*
4743965 GTTTGACCGATTTTGAACCT
1 GTTTGACCGGTTTTGAACCT
4743985 GTTTGACCGGTTTTGAACCT
1 GTTTGACCGGTTTTGAACCT
4744005 GTTTGACCGGTTT
1 GTTTGACCGGTTT
4744018 CCGACCTGAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.42
Consensus pattern (20 bp):
GTTTGACCGGTTTTGAACCT
Found at i:4744117 original size:29 final size:28
Alignment explanation
Indices: 4744065--4744230 Score: 93
Period size: 29 Copynumber: 5.8 Consensus size: 28
4744055 GGGTGACATT
* *
4744065 TGGTAATTATTTGGGAAATGGTGCTATTC
1 TGGTAATTATTT-TGAAAAGGTGCTATTC
*
4744094 TGGTAATTATTTTGAAAAGCGTGCTATTT
1 TGGTAATTATTTTGAAAAG-GTGCTATTC
* * * * *
4744123 TTGTAATTTTTTTAAAAAAGTGATAATT-
1 TGGTAATTATTTTGAAAAGGTGCT-ATTC
* * * * *
4744151 TCGTAA-AATTTTTAAAAGAGTGATATTT
1 TGGTAATTATTTTGAAAAG-GTGCTATTC
* * * *
4744179 TAGTAATTATTTTAAAAATGATGCTATTT
1 TGGTAATTATTTTGAAAA-GGTGCTATTC
* *
4744208 TGGTAATTAATTTCAAAATGGTG
1 TGGTAATTATTTTGAAAA-GGTG
4744231 TTTTTTCGTA
Statistics
Matches: 109, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
27 11 0.10
28 24 0.22
29 73 0.67
30 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (28 bp):
TGGTAATTATTTTGAAAAGGTGCTATTC
Found at i:4744156 original size:28 final size:28
Alignment explanation
Indices: 4744125--4744196 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
4744115 TGCTATTTTT
*
4744125 GTAATTTTTTTAAAAAAGTGATAATTTC
1 GTAATTTTTTTAAAAAAGTGATAATTTA
** * *
4744153 GTAAAATTTTTAAAAGAGTGATATTTTA
1 GTAATTTTTTTAAAAAAGTGATAATTTA
*
4744181 GTAATTATTTTAAAAA
1 GTAATTTTTTTAAAAA
4744197 TGATGCTATT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.43, C:0.01, G:0.11, T:0.44
Consensus pattern (28 bp):
GTAATTTTTTTAAAAAAGTGATAATTTA
Found at i:4745362 original size:117 final size:117
Alignment explanation
Indices: 4745153--4745400 Score: 415
Period size: 117 Copynumber: 2.1 Consensus size: 117
4745143 GGAAGTATTT
*
4745153 CAGGTAGGTGTATGGTTCTGGAGAACCTACACATTGTAGTGATTGGAGTGACTGGATGGGGAAGT
1 CAGGTGGGTGTATGGTTCTGGAGAACCTACACATTGTAGTGATTGGAGTGACTGGATGGGGAAGT
* **
4745218 TATTACCGCAGGTTCCTTTGCTGTGTGCTCAGGGTAAGTCCTTACTGGTGTG
66 TATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTACTGGTGTG
* *
4745270 CAGGTGGGTGTATGGTTCTGGGGAACCTAGACATTGTAGTGATTGGAGTGACTGGATGGGGAAGT
1 CAGGTGGGTGTATGGTTCTGGAGAACCTACACATTGTAGTGATTGGAGTGACTGGATGGGGAAGT
* * *
4745335 TATTACTGCAGGATCCTCGGCTTTGTGCTTAGGGTAAGTCCTTACTGGTGTG
66 TATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTACTGGTGTG
4745387 CAGGTGGGTGTATG
1 CAGGTGGGTGTATG
4745401 TTTCGGGAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 122 1.00
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.31
Consensus pattern (117 bp):
CAGGTGGGTGTATGGTTCTGGAGAACCTACACATTGTAGTGATTGGAGTGACTGGATGGGGAAGT
TATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTACTGGTGTG
Found at i:4745435 original size:117 final size:117
Alignment explanation
Indices: 4745197--4745437 Score: 315
Period size: 117 Copynumber: 2.1 Consensus size: 117
4745187 TGTAGTGATT
* **
4745197 GGAGTGACTGGATGGGGAAGTTATTACCGCAGGTTCCTTTGCTGTGTGCTCAGGGTAAGTCCTTA
1 GGAGTGACTGGATGGGGAAGTTATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTA
* ** ** ** *
4745262 CTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTAGACATTGTAGTGATT
66 CTGGTGTGCAGGTGGGTGTATGGTTCTCGGGAAAATAGACAAAGTAGAAATC
* * *
4745314 GGAGTGACTGGATGGGGAAGTTATTACTGCAGGATCCTCGGCTTTGTGCTTAGGGTAAGTCCTTA
1 GGAGTGACTGGATGGGGAAGTTATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTA
*
4745379 CTGGTGTGCAGGTGGGTGTAT-GTT-TCGGGAAAATATACAAAAGATAGAAATC
66 CTGGTGTGCAGGTGGGTGTATGGTTCTCGGGAAAATAGAC-AAAG-TAGAAATC
4745431 GGAGTGA
1 GGAGTGA
4745438 TTGAATGGAA
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
115 10 0.09
116 5 0.05
117 92 0.86
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.30
Consensus pattern (117 bp):
GGAGTGACTGGATGGGGAAGTTATTACCGCAGGATCCTCGGCTGTGTGCTCAGGGTAAGTCCTTA
CTGGTGTGCAGGTGGGTGTATGGTTCTCGGGAAAATAGACAAAGTAGAAATC
Found at i:4746027 original size:29 final size:30
Alignment explanation
Indices: 4745989--4746063 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
4745979 ATTGTATCGT
*
4745989 TTATACCACTGAACTTTCAATTT-TTTCAA
1 TTATACCACTAAACTTTCAATTTCTTTCAA
* * *
4746018 TTATAACACTAAACTTTGATTTTCGTTTCAA
1 TTATACCACTAAACTTTCAATTTC-TTTCAA
4746049 TTATACCACTAAACT
1 TTATACCACTAAACT
4746064 ATTAAATTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 19 0.49
31 20 0.51
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (30 bp):
TTATACCACTAAACTTTCAATTTCTTTCAA
Found at i:4747828 original size:18 final size:19
Alignment explanation
Indices: 4747793--4747829 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4747783 CACGGAATGT
4747793 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
4747813 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
4747830 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:4748518 original size:38 final size:38
Alignment explanation
Indices: 4748467--4748562 Score: 147
Period size: 38 Copynumber: 2.5 Consensus size: 38
4748457 CTCGTATAAA
*
4748467 TGTCCCGAAGGACCTATCATCCCGAAGGATGTCATCTG
1 TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
* **
4748505 TGTCCCGAAGGACCTGTCATCTTGAAGGATGTAATCTG
1 TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
*
4748543 TGTCCCGTAGGACCTATCAT
1 TGTCCCGAAGGACCTATCAT
4748563 ATGTCTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (38 bp):
TGTCCCGAAGGACCTATCATCCCGAAGGATGTAATCTG
Found at i:4748768 original size:46 final size:45
Alignment explanation
Indices: 4748711--4748798 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 45
4748701 ATGTGTAACC
4748711 ATGTATTTCATATCATATCACATGTATCACGTATTACATATTCAT
1 ATGTATTTCATATCATATCACATGTATCACGTATTACATATTCAT
*
4748756 ATGTCATTTCATATCATATCACATGTATCACGTATTGCATATT
1 ATGT-ATTTCATATCATATCACATGTATCACGTATTACATATT
4748799 ATGTAACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
45 4 0.10
46 37 0.90
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (45 bp):
ATGTATTTCATATCATATCACATGTATCACGTATTACATATTCAT
Found at i:4748796 original size:23 final size:22
Alignment explanation
Indices: 4748723--4748797 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
4748713 GTATTTCATA
4748723 TCATATCACATGTATCACGTAT
1 TCATATCACATGTATCACGTAT
* ** *
4748745 TACATATTCATATGTCATTTCATA-
1 T-CATA-TCACATGT-ATCACGTAT
4748769 TCATATCACATGTATCACGTAT
1 TCATATCACATGTATCACGTAT
4748791 TGCATAT
1 T-CATAT
4748798 TATGTAACAT
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
21 5 0.12
22 9 0.22
23 13 0.32
24 8 0.20
25 5 0.12
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (22 bp):
TCATATCACATGTATCACGTAT
Found at i:4752088 original size:16 final size:15
Alignment explanation
Indices: 4752069--4752116 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
4752059 CCGAACCGAG
4752069 AGAAACTCGAACTGAA
1 AGAAA-TCGAACTGAA
*
4752085 AGAAATACGAACCGAA
1 AGAAAT-CGAACTGAA
*
4752101 AGCAATTCGAACTGAA
1 AG-AAATCGAACTGAA
4752117 TTTAACCCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 1 0.04
16 23 0.85
17 3 0.11
ACGTcount: A:0.50, C:0.19, G:0.19, T:0.12
Consensus pattern (15 bp):
AGAAATCGAACTGAA
Found at i:4769188 original size:18 final size:18
Alignment explanation
Indices: 4769167--4769201 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4769157 TAACTTCTAA
4769167 CTTAGCTAGAACTCTTAC
1 CTTAGCTAGAACTCTTAC
*
4769185 CTTAGCTAGGACTCTTA
1 CTTAGCTAGAACTCTTA
4769202 GTAATATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (18 bp):
CTTAGCTAGAACTCTTAC
Done.