Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008107.1 Hibiscus syriacus cultivar Beakdansim tig00110643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93494

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5714--5762
16
2.9
18
84
9
59
67
0
18
14
1.23
5708--5767
17
3.7
15
74
23
59
66
0
18
15
1.25
7236--7279
11
3.6
12
85
14
63
84
9
6
0
0.79
7236--7286
23
2.1
25
85
7
70
80
11
7
0
0.90
12086--12128
18
2.4
18
100
0
86
25
9
27
37
1.87
14730--14761
13
2.5
13
95
5
57
68
0
15
15
1.21
19289--19351
21
3.1
20
72
17
58
0
9
12
77
0.98
19289--19352
30
2.2
30
85
2
85
0
9
14
76
1.01
19315--19348
13
2.5
13
95
4
59
0
11
8
79
0.94
24541--24573
14
2.4
14
90
10
50
78
0
21
0
0.75
27308--27337
13
2.4
13
94
5
53
43
0
30
26
1.55
31656--31740
11
7.2
11
72
22
66
31
36
3
28
1.74
31653--31757
36
2.9
36
95
1
185
30
36
4
28
1.78
40027--40080
6
9.0
6
76
15
58
1
16
1
79
0.91
48696--48749
24
2.3
23
81
9
65
61
14
16
7
1.55
53056--53095
19
2.0
20
86
13
57
22
10
0
67
1.20
61661--61707
19
2.6
18
87
12
62
4
17
6
72
1.22
61653--61702
19
2.5
22
72
27
56
4
18
4
74
1.14
61658--61707
17
2.9
17
83
16
59
4
16
6
74
1.17
63416--63475
30
2.0
31
83
3
77
51
10
10
28
1.67
69782--69833
19
2.6
21
90
6
81
46
5
13
34
1.67
74802--74853
11
4.7
11
81
6
61
1
9
7
80
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74812--74856
10
4.3
10
81
10
54
0
8
6
84
0.78
74802--74853
22
2.4
22
86
0
68
1
9
7
80
0.97
80107--80138
16
1.9
17
93
6
57
0
18
3
78
0.89
86157--86209
22
2.6
19
82
8
61
35
13
5
45
1.67
87154--87201
24
2.0
25
83
4
62
50
12
25
12
1.75

Tables:   1

The End!