Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008111.1 Hibiscus syriacus cultivar Beakdansim tig00110647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1666726
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 64 characters in sequence are not A, C, G, or T
File 4 of 9
Found at i:644884 original size:36 final size:36
Alignment explanation
Indices: 644832--644998 Score: 124
Period size: 36 Copynumber: 4.6 Consensus size: 36
644822 TCAAAATGGT
* * * * *
644832 TTTTAAAAATTATATATTATATAAATGTTTTCATAACG
1 TTTTCAAAAGTATATA-T-TATAAATATTTTAAAAACG
*
644870 TTTTCAAAAGTATATATTATATATATTTTAAAAACG
1 TTTTCAAAAGTATATATTATAAATATTTTAAAAACG
* * **
644906 TTTTCAAAAACTATATATTATATAAT-TTTCAAAAATA
1 TTTTC-AAAAGTATATATTATA-AATATTTTAAAAACG
* * * * *
644943 TTTTAAAAACTATATAATATACATATTTTCAAAAATG
1 TTTTCAAAAGTATATATTATAAATATTTT-AAAAACG
*
644980 TTTT--AAACTATATATTATA
1 TTTTCAAAAGTATATATTATA
644999 TATGTATTTT
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
35 16 0.15
36 38 0.35
37 38 0.35
38 16 0.15
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.45
Consensus pattern (36 bp):
TTTTCAAAAGTATATATTATAAATATTTTAAAAACG
Found at i:644929 original size:37 final size:37
Alignment explanation
Indices: 644814--645015 Score: 207
Period size: 37 Copynumber: 5.4 Consensus size: 37
644804 TTTTCAAAAA
** *
644814 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTAT
1 ATATATTTTCAAAAACG-TTTTAAAAACTATATATTAT
* * * *
644852 ATAAATGTTTTC-ATAACGTTTTCAAAAGTATATATTAT
1 AT--ATATTTTCAAAAACGTTTTAAAAACTATATATTAT
644890 ATATATTTT-AAAAACGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTT-AAAAACTATATATTAT
** *
644927 ATA-ATTTTCAAAAATATTTTAAAAACTATATAATAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
* *
644963 ACATATTTTCAAAAATGTTTT--AAACTATATATTAT
1 ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
644998 ATATGTATTTTCAAAAAC
1 ATA--TATTTTCAAAAAC
645016 AATTTGCAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
35 15 0.11
36 37 0.27
37 54 0.39
38 22 0.16
39 3 0.02
40 7 0.05
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (37 bp):
ATATATTTTCAAAAACGTTTTAAAAACTATATATTAT
Found at i:645027 original size:74 final size:71
Alignment explanation
Indices: 644875--645037 Score: 184
Period size: 74 Copynumber: 2.2 Consensus size: 71
644865 TAACGTTTTC
* * *
644875 AAAAGTATATATTATATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
1 AAAACTATATAATATACATATTTTAAAAACGTTTT--AAAACTATATATTATATAATTTTCAAAA
* *
644940 ATATTTTA
64 ACAATTTA
*
644948 AAAACTATATAATATACATATTTTCAAAAATGTTTT-AAACTATATATTATATATGTATTTTCAA
1 AAAACTATATAATATACATATTTT-AAAAACGTTTTAAAACTATATATTATATA---ATTTTCAA
*
645012 AAACAATTTG
62 AAACAATTTA
* *
645022 CAAACTGTATAATATA
1 AAAACTATATAATATA
645038 TATGTGTATA
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
71 17 0.22
73 21 0.27
74 39 0.51
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (71 bp):
AAAACTATATAATATACATATTTTAAAAACGTTTTAAAACTATATATTATATAATTTTCAAAAAC
AATTTA
Found at i:645037 original size:37 final size:34
Alignment explanation
Indices: 644912--645038 Score: 101
Period size: 37 Copynumber: 3.5 Consensus size: 34
644902 AACGTTTTCA
* * *
644912 AAAACTATATATTATATAATTTTCAAAAATATTTT
1 AAAACTATATAATATATTATTTTCAAAAA-AATTT
* **
644947 AAAAACTATATAATATACATATTTTCAAAAATGTTT
1 -AAAACTATATAATATA-TTATTTTCAAAAAAATTT
*
644983 TAAACTATATATTATATATGTATTTTCAAAAACAATTT
1 AAAACTATATA--ATATAT-TATTTTCAAAAA-AATTT
* *
645021 GCAAACTGTATAATATAT
1 -AAAACTATATAATATAT
645039 ATGTGTATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
35 10 0.14
36 18 0.24
37 34 0.46
38 3 0.04
39 9 0.12
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (34 bp):
AAAACTATATAATATATTATTTTCAAAAAAATTT
Found at i:651173 original size:6 final size:6
Alignment explanation
Indices: 651164--651234 Score: 83
Period size: 6 Copynumber: 11.5 Consensus size: 6
651154 ATTATTATTT
651164 TAATAA TAAT-A TAATATA TATATATA TAAT-A TATATAA TAATAA TAATAA
1 TAATAA TAATAA TAATA-A TA-ATA-A TAATAA TA-ATAA TAATAA TAATAA
*
651214 TTATAA TAATAA TAATAA TAA
1 TAATAA TAATAA TAATAA TAA
651235 ATAAATAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
5 8 0.14
6 35 0.60
7 8 0.14
8 7 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (6 bp):
TAATAA
Found at i:651195 original size:9 final size:8
Alignment explanation
Indices: 651166--651242 Score: 81
Period size: 9 Copynumber: 9.5 Consensus size: 8
651156 TATTATTTTA
651166 ATAATAAT
1 ATAATAAT
651174 ATAAT-AT
1 ATAATAAT
651181 AT-ATATAT
1 ATAATA-AT
651189 ATAATATAT
1 ATAATA-AT
651198 ATAATAAT
1 ATAATAAT
651206 AATAATAATT
1 -ATAATAA-T
651216 ATAATAAT
1 ATAATAAT
651224 AATAATAAT
1 -ATAATAAT
651233 A-AATAA-
1 ATAATAAT
651239 ATAA
1 ATAA
651243 AATGGGTAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 15
0.81 0.00 0.19
Matches are distributed among these distances:
6 3 0.05
7 11 0.18
8 13 0.21
9 34 0.55
10 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATAAT
Found at i:651718 original size:113 final size:111
Alignment explanation
Indices: 651574--651948 Score: 450
Period size: 113 Copynumber: 3.3 Consensus size: 111
651564 ATAGAGTCAT
* *
651574 GCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
* * * * *
651639 ATGATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATAAATTCGA
65 ATTATGAACTCTC-CTGGAAATGTTGATCCATCGAATGATGAATTCAA
* *
651687 GCGAAAAGTTGAACAAGTTCTTCTTATTATGAA---CTTCTTCTTTCTTTAGATGACGAGTTCTT
1 GC-AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGAT---GAGTTCTT
* * *
651749 CTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTTAA
62 CTCATTATGAACTCT-CCTGGAAATGTTGATCCATCGAATGATGAATTCAA
* * *
651800 ACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTT
1 GCAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
** * * *
651865 ATTATGAACTCGAACTGGTAATGCTGATCCATTGAATGATGAATTCAA
65 ATTATGAACTC-TCCTGGAAATGTTGATCCATCGAATGATGAATTCAA
*
651913 GAAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
1 G-CAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
651949 TCTCTGGAAA
Statistics
Matches: 224, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
110 17 0.08
112 4 0.02
113 177 0.79
114 9 0.04
116 17 0.08
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (111 bp):
GCAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTCCTGGAAATGTTGATCCATCGAATGATGAATTCAA
Found at i:651943 original size:73 final size:73
Alignment explanation
Indices: 651855--652018 Score: 193
Period size: 73 Copynumber: 2.2 Consensus size: 73
651845 TCTTCAGATG
* * * **
651855 AGTTCTTCTTATTATGAACTCGAACTGGTAATGCTGATCCATTGAATGATGAATTCAAGAAAAAA
1 AGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAA
651920 GTTGAACA
66 GTTGAACA
**** * ** * *
651928 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAA
651993 GTTGAACA
66 GTTGAACA
*
652001 AATTCTTCTCATTATGAA
1 AGTTCTTCTCATTATGAA
652019 TTCTTCTTCC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (73 bp):
AGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAA
GTTGAACA
Found at i:652122 original size:185 final size:186
Alignment explanation
Indices: 651744--652135 Score: 520
Period size: 185 Copynumber: 2.1 Consensus size: 186
651734 AGATGACGAG
* * * *
651744 TTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGG
1 TTCTTCTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGG
* *
651808 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTTATTATGAA
65 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * ** *
651873 CTCGAACTGGTAATGCTGATCCATTGAATGATGAATTCAAGAAAAAAGTTGAACAAG
130 CTCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACAAA
* * *
651930 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGGT
*
651995 TGAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAT
66 TGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
***** * * ** * *
652059 TTTTTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
131 TCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACAAA
652115 TTCTTCTCATTATGAA-TTTCT
1 TTCTTCTCATTATGAACTTTCT
652136 TCTTCCTTCT
Statistics
Matches: 179, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 5 0.03
185 95 0.53
186 79 0.44
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (186 bp):
TTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGGT
TGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
TCGAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACAAA
Found at i:652168 original size:411 final size:412
Alignment explanation
Indices: 651574--652362 Score: 1091
Period size: 411 Copynumber: 1.9 Consensus size: 412
651564 ATAGAGTCAT
* *
651574 GCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
651639 ATGATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATAAATTCGAGCGAAAAGTTGAACAAG
66 ATGATGAACTCTCTCTGGAAAAGTTGATCCATCAAATGATAAATTCGAGCGAAAAGTTGAACAAA
* * *
651704 TTCTTCTTATTATGAACTTCTTCTTTCTTTAGATGACGAGTTCTTCTCATTATGAACTCTACCTG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTTACATGACGAGTTCTTCTCATTATGAACTCTACCTG
* * *
651769 GCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
196 GAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * * * *
651834 TTCTTCTTCTTTCTTCAGATGAGTTCTTCTTATTATGAAC-TCGAACTGGTAATGCTGATCCATT
261 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCGAACTGGAAAAGCTGATCCATC
* *
651898 GAATGATGAATTCAAGAAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCT
326 AAATGATGAATTCAAGAAAAAAGTTGAACAAATTCTTCTCATTATGAA-TTTCTCTGGAAAAGCT
651963 GATCCATCAAATGATGGATTTGA
390 GATCCATCAAATGATGGATTTGA
* *
651986 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * * ** *
652050 ATTATGAATTTTTTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGC-AAAAGGTTGAACAA
66 ATGATGAACTCTCTCTGGAAAAGTTGATCCATCAAATGATAAATTCGAGCGAAAA-GTTGAACAA
* * * * **
652114 ATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCA-GATGAGTTCTTCTCATTATGAACTTTTTC
130 ATTCTTCTCATTATGAACTTCTTCTTCCTT-TACATGACGAGTTCTTCTCATTATGAACTCTACC
* * *
652178 TGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
194 TGGAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGA
* *****
652243 ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTTTTGGAAAAGCTGATCCA
259 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCGAACTGGAAAAGCTGATCCA
* ** * *
652308 TCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCT
324 TCAAATGATGAATTCAAGAAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCT
652363 TCTTCCTTCT
Statistics
Matches: 326, Mismatches: 48, Indels: 7
0.86 0.13 0.02
Matches are distributed among these distances:
410 4 0.01
411 233 0.71
412 89 0.27
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (412 bp):
GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATGATGAACTCTCTCTGGAAAAGTTGATCCATCAAATGATAAATTCGAGCGAAAAGTTGAACAAA
TTCTTCTCATTATGAACTTCTTCTTCCTTTACATGACGAGTTCTTCTCATTATGAACTCTACCTG
GAAAAGCTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCGAACTGGAAAAGCTGATCCATC
AAATGATGAATTCAAGAAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTCTGGAAAAGCTG
ATCCATCAAATGATGGATTTGA
Found at i:652169 original size:298 final size:297
Alignment explanation
Indices: 651629--652248 Score: 823
Period size: 298 Copynumber: 2.1 Consensus size: 297
651619 TCTTCAGATG
* * * * *
651629 AGTTCTTCTCATGATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATAAATTCGAGCGAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATAAATTCGAGCGAAAA
* * * *
651694 GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTTAGATGACGAGTTCTTCTCATTATGA
66 GTTGAACAAATTCTTCTCATTATGAACTTCTTCCTTCTTCAGAT-A-GAGTTCTTCTCATTATGA
* *
651759 ACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCT
129 ACTCTACCTGGAAAAGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCT
* * * *
651824 CATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTTATTATGAACTCGAACTGGTAATGC
194 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGC
**
651889 TGATCCATTGAATGATGAATTCAAGAAAAAAGTTGAACA
259 TGATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACA
** *
651928 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGC-AAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATAAATTCGAGCGAAAA
651992 GGTTGAACAAATTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGAT-GAGTTCTTCTCATTATG
66 -GTTGAACAAATTCTTCTCATTATGAA--CTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTATG
* * *** * * *
652056 AATTTTTTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
128 AACTCTACCTGGAAAAGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTC
* ****
652121 TCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAG
193 TCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAG
* ** * *
652186 CTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACA
258 CTGATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACA
*
652226 AATTCTTCTCATTATGAA-TTTCT
1 AGTTCTTCTCATTATGAACTTTCT
652249 TCTTCCTTCT
Statistics
Matches: 279, Mismatches: 39, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
297 5 0.02
298 182 0.65
299 76 0.27
301 16 0.06
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (297 bp):
AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATAAATTCGAGCGAAAA
GTTGAACAAATTCTTCTCATTATGAACTTCTTCCTTCTTCAGATAGAGTTCTTCTCATTATGAAC
TCTACCTGGAAAAGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCA
TTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTG
ATCCATCAAATGATGAATTCAAGAAAAAAGTTGAACA
Found at i:652377 original size:227 final size:227
Alignment explanation
Indices: 651928--652513 Score: 1131
Period size: 227 Copynumber: 2.6 Consensus size: 227
651918 AAGTTGAACA
*
651928 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
651993 GTTGAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
*
652057 A-TTTTTTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
131 ACTTTTTTTTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
652121 TCATTATGAATTTCTTCTTCCTTCTTCAGATG
196 TCATTATGAATTTCTTCTTCCTTCTTCAGATG
652153 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
652218 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
652283 ACTTTTTTTTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
131 ACTTTTTTTTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
652348 TCATTATGAATTTCTTCTTCCTTCTTCAGATG
196 TCATTATGAATTTCTTCTTCCTTCTTCAGATG
652380 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
*
652445 GTTGAACAAATTATTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
652510 ACTT
131 ACTT
652514 CAACTGACAC
Statistics
Matches: 356, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
225 90 0.25
226 39 0.11
227 227 0.64
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (227 bp):
AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
ACTTTTTTTTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTC
TCATTATGAATTTCTTCTTCCTTCTTCAGATG
Found at i:652543 original size:113 final size:113
Alignment explanation
Indices: 651928--652513 Score: 1102
Period size: 113 Copynumber: 5.2 Consensus size: 113
651918 AAGTTGAACA
*
651928 AGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
651993 GTTGAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
* * *
652040 AGTTCTTCTCATTATGAATTTTTTTTGGAAAAGTTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
652105 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
652153 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
652218 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
*
652266 AGTTCTTCTCATTATGAACTTTTTTTTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAA
1 AGTTCTTCTCATTATGAAC-TTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAA
652331 GGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
65 GGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
652380 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
1 AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
*
652445 GTTGAACAAATTATTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
652493 AGTTCTTCTCATTATGAACTT
1 AGTTCTTCTCATTATGAACTT
652514 CAACTGACAC
Statistics
Matches: 462, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
112 87 0.19
113 263 0.57
114 112 0.24
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAG
GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATG
Found at i:653027 original size:22 final size:22
Alignment explanation
Indices: 652948--653024 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
652938 TCTAAAGCTT
652948 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
652970 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTGAAAAGAGAATCTA
*
652992 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
653014 TCATCTTTGAA
1 TCATCTTTGAA
653025 GAGTGTAGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:653473 original size:54 final size:54
Alignment explanation
Indices: 653384--653549 Score: 287
Period size: 54 Copynumber: 3.1 Consensus size: 54
653374 AGAATAGCAG
*
653384 GTTCGTAAAACATTTGACAACACATTCATCTTTTCCTGTAGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCATTTCCTGTAGTTTCTGCTCAGAT
* * *
653438 GTTTGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCATTTCCTGTAGTTTCTGCTCAGAT
*
653492 GTTCATAAAACATTTGACAACACATTCATCATTTCCTGTAGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCATTTCCTGTAGTTTCTGCTCAGAT
653546 GTTC
1 GTTC
653550 TCAATCATTG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCATTTCCTGTAGTTTCTGCTCAGAT
Found at i:655874 original size:91 final size:91
Alignment explanation
Indices: 655611--655878 Score: 385
Period size: 92 Copynumber: 2.9 Consensus size: 91
655601 GATCATGCAG
* * *
655611 TTCATCTTTT-AATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTTAAATT-CAATGATT-GTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAG
* *
655675 AACACTTCCAGAAGATGCTATTAGCACA
64 AACACTTCCAGAAGATACTATGAGCACA
* ** * *
655703 TTCCTCTTCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTTAAATTCAATGA-TTGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGA
655768 ACACTTCCAGAAGATACTATGAGCACA
65 ACACTTCCAGAAGATACTATGAGCACA
* * *
655795 TTTATCTTTTAAATTCAATGATTGATATGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAA
1 TTCATCTTTTAAATTCAATGATTGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAA
655860 CACTTCCAGAAGATACTAT
66 CACTTCCAGAAGATACTAT
655879 TGGGTCTTCT
Statistics
Matches: 156, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
91 60 0.38
92 91 0.58
93 5 0.03
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (91 bp):
TTCATCTTTTAAATTCAATGATTGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATACTATGAGCACA
Found at i:658184 original size:11 final size:11
Alignment explanation
Indices: 658165--658200 Score: 58
Period size: 10 Copynumber: 3.5 Consensus size: 11
658155 TCAATTTTCC
658165 TTTTT-CTTTT
1 TTTTTCCTTTT
658175 TTTTTCC-TTT
1 TTTTTCCTTTT
658185 TTTTTCCTTTT
1 TTTTTCCTTTT
658196 TTTTT
1 TTTTT
658201 TCTTCTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCCTTTT
Found at i:658195 original size:17 final size:17
Alignment explanation
Indices: 658159--658212 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
658149 CTTGATTCAA
*
658159 TTTTCCTTTTTCTTTTT
1 TTTTCCTTTTTCTTTCT
658176 TTTTCCTTTTT-TTTCCT
1 TTTTCCTTTTTCTTT-CT
**
658193 TTTTTTTTTCTTCTTTCT
1 TTTTCCTTT-TTCTTTCT
658211 TT
1 TT
658213 GCTGGATGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 3 0.10
17 19 0.61
18 6 0.19
19 3 0.10
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTCCTTTTTCTTTCT
Found at i:661529 original size:14 final size:14
Alignment explanation
Indices: 661491--661544 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
661481 CATAAAAATA
* *
661491 CAAATGCAAAGATG
1 CAAATGTAAATATG
661505 CCAAATGTAAATATG
1 -CAAATGTAAATATG
* *
661520 CAATTGTAAAAATG
1 CAAATGTAAATATG
*
661534 TAAATGTAAAT
1 CAAATGTAAAT
661545 TATTTAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:665148 original size:3 final size:3
Alignment explanation
Indices: 665142--665216 Score: 109
Period size: 3 Copynumber: 25.0 Consensus size: 3
665132 ATTATTTTTT
*
665142 TAA TAA TAA TAA TAA T-A TATA TAA TAA T-A TATA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
665187 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
665217 ATAAATAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
2 4 0.06
3 56 0.85
4 6 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:665231 original size:9 final size:10
Alignment explanation
Indices: 665142--665228 Score: 82
Period size: 9 Copynumber: 9.3 Consensus size: 10
665132 ATTATTTTTT
665142 TAATAAT-AA
1 TAATAATAAA
*
665151 TAATAATATA
1 TAATAATAAA
665161 T-ATAATAATA
1 TAATAATAA-A
665171 TATATAAT-AA
1 TA-ATAATAAA
*
665181 TTATAAT-AA
1 TAATAATAAA
665190 TAATAAT-AA
1 TAATAATAAA
665199 TAATAAT-AA
1 TAATAATAAA
665208 TAATAATAAA
1 TAATAATAAA
665218 T-A-AATAAA
1 TAATAATAAA
665226 TAA
1 TAA
665229 AATGGGTAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
8 7 0.10
9 46 0.68
10 9 0.13
11 1 0.01
12 5 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAATAATAAA
Found at i:667806 original size:3 final size:3
Alignment explanation
Indices: 667798--667825 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
667788 TAGATTATAG
667798 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
667826 AAAAGACATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:668498 original size:80 final size:80
Alignment explanation
Indices: 668204--668549 Score: 324
Period size: 80 Copynumber: 4.2 Consensus size: 80
668194 CTATAATGGC
* * * * * *
668204 GTGTATTTTCAACAAATGGCTTAACAGAGTAGTACTTTAGCGGCATTTTTATACAAAAACCGCAA
1 GTGTTTTTTCAACAAATGCCATAACAAAGTAGTACTTTAGCGGTATTTTTATACAAACACCGCAA
*
668269 TA-GGTTTATCTATA
66 TAGGGTTCATCTATA
* * ** * *
668283 GTGGCGTTTTTTCAATAAACGCCGCAACATAA-TAGTACTTTAGCGGTGTTTTTATAC-AACACT
1 GT---GTTTTTTCAACAAATGCCATAACA-AAGTAGTACTTTAGCGGTATTTTTATACAAACACC
*
668346 GCAATAGGGTCCATCTATA
62 GCAATAGGGTTCATCTATA
* * *
668365 GTGGTATTGTTTTCAACAAACGTCATAACAGAGTA-TAACTTTAGCGG-AGTTTTTATACAAACA
1 GT-G--TT-TTTTCAACAAATGCCATAACAAAGTAGT-ACTTTAGCGGTA-TTTTTATACAAACA
668428 CCGCAATAGGGTTCATCTATA
60 CCGCAATAGGGTTCATCTATA
* * ****
668449 GTGTTTTTTCAATAAATGCCATAATAAAGTAGTACTTTAGCGGTATTTTTATACAAATGTTGCAA
1 GTGTTTTTTCAACAAATGCCATAACAAAGTAGTACTTTAGCGGTATTTTTATACAAACACCGCAA
*
668514 CAGGGTTCATCTATA
66 TAGGGTTCATCTATA
668529 GTGACATTTTTTCAACAAATG
1 GTG---TTTTTTCAACAAATG
668550 TGCAACATAG
Statistics
Matches: 217, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
79 2 0.01
80 65 0.30
81 14 0.06
82 57 0.26
83 54 0.25
84 25 0.12
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (80 bp):
GTGTTTTTTCAACAAATGCCATAACAAAGTAGTACTTTAGCGGTATTTTTATACAAACACCGCAA
TAGGGTTCATCTATA
Found at i:669711 original size:31 final size:31
Alignment explanation
Indices: 669670--669729 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
669660 TTTATCTATA
* *
669670 TAAAATTTTCTATTAAGGTCTTTTTCATTAT
1 TAAAATTTTCTATTAAAGTATTTTTCATTAT
*
669701 TAAAGTTTTCTATTAAAGTATTTTTCATT
1 TAAAATTTTCTATTAAAGTATTTTTCATT
669730 TATTTCTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (31 bp):
TAAAATTTTCTATTAAAGTATTTTTCATTAT
Found at i:670587 original size:42 final size:41
Alignment explanation
Indices: 670485--670623 Score: 99
Period size: 42 Copynumber: 3.4 Consensus size: 41
670475 TCATTAACGG
* * *
670485 CGTTTTTCAA-AAAATGCCACTAAAACTCGTACTTTAGTGG
1 CGTTTTTTAAGAAAATGCCACTAAAACTAGTACTTTAGTGA
* **
670525 CGTTTATTT--GACAAACGCCACTAAAGTTAAGTACTTTAGTGA
1 CGTTT-TTTAAGA-AAATGCCACTAAAACT-AGTACTTTAGTGA
* * * *
670567 TGTTTTTTAAGAAAATGCCACGAAAAAC-ATGTACTTTAGCGT
1 CGTTTTTTAAGAAAATGCCAC-TAAAACTA-GTACTTTAGTGA
670609 CG-TTTTTATAGAAAA
1 CGTTTTTTA-AGAAAA
670624 CGCTACTATA
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
40 6 0.08
41 25 0.33
42 40 0.53
43 5 0.07
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (41 bp):
CGTTTTTTAAGAAAATGCCACTAAAACTAGTACTTTAGTGA
Found at i:673201 original size:23 final size:23
Alignment explanation
Indices: 673167--673227 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
673157 ACATCTTATA
*
673167 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
673190 CT-GCACTTCGGTGCAATTCTATG
1 -TGGCACTTCGGTGCAATTCTACG
673213 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
673228 TTTATACGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 1 0.03
23 32 0.94
24 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:678917 original size:23 final size:24
Alignment explanation
Indices: 678857--678927 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 24
678847 GACATCTTAT
*
678857 ATGGCACTACGGTGCAATTCTACG
1 ATGGCACTTCGGTGCAATTCTACG
*
678881 AT-GCACTTTGGTGCAATTCTACG
1 ATGGCACTTCGGTGCAATTCTACG
* * *
678904 -TGGCACTTCAGTGCATTTATACG
1 ATGGCACTTCGGTGCAATTCTACG
678927 A
1 A
678928 GCTGTGGTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 1 0.03
23 36 0.92
24 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (24 bp):
ATGGCACTTCGGTGCAATTCTACG
Found at i:682200 original size:21 final size:21
Alignment explanation
Indices: 682167--682235 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
682157 TAAACTTTGA
*
682167 TTTATTATTATGGAGTTCAAG
1 TTTATTGTTATGGAGTTCAAG
* *
682188 TTTGTTGTTATGGATTTCAAG
1 TTTATTGTTATGGAGTTCAAG
682209 TTTATTGTTATGG-GTGTCAAG
1 TTTATTGTTATGGAGT-TCAAG
682230 TTTATT
1 TTTATT
682236 AGATAATGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 1 0.02
21 41 0.98
ACGTcount: A:0.22, C:0.04, G:0.22, T:0.52
Consensus pattern (21 bp):
TTTATTGTTATGGAGTTCAAG
Found at i:685121 original size:115 final size:111
Alignment explanation
Indices: 684955--685173 Score: 314
Period size: 115 Copynumber: 1.9 Consensus size: 111
684945 ATCCCTTGGT
* * * *
684955 TTTGAATCAATTCTGGAAAGGGGATGGGGGTTATCTTGTTAATGGGTTCGCTATTGTCATTATCC
1 TTTGAATCAATTCTAGAAAGAGGATGGGGGCTATCTGGTTAATGGGTTCGCTATTGTCATTATCC
*
685020 TTAAGTTTAT-TTTAGAAGTATTCAACAAGTATACTTATCCATTAGG
66 TTAA-TTTATATTTAGAAGTATTCAACAAGGATACTTATCCATTAGG
685066 TTTGAATCAATTCTTAGAAAGAGGATTGGGGGCCTATCTAGGTTAATGGGTTCGCTATTGTCATT
1 TTTGAATCAATTC-TAGAAAGAGGA-TGGGGG-CTATCT-GGTTAATGGGTTCGCTATTGTCATT
* *
685131 ATCCTTCATTTATAGTTTAGAAGTATTCAATAAGGATACTTAT
62 ATCCTTAATTTATA-TTTAGAAGTATTCAACAAGGATACTTAT
685174 AATTTTGCTT
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
111 13 0.14
112 9 0.09
113 6 0.06
114 10 0.11
115 31 0.33
116 26 0.27
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (111 bp):
TTTGAATCAATTCTAGAAAGAGGATGGGGGCTATCTGGTTAATGGGTTCGCTATTGTCATTATCC
TTAATTTATATTTAGAAGTATTCAACAAGGATACTTATCCATTAGG
Found at i:692665 original size:18 final size:18
Alignment explanation
Indices: 692644--692680 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
692634 TTCTTCTGAC
692644 TACAAGTTTTATTGCATG
1 TACAAGTTTTATTGCATG
692662 TACAAGTTTTATTGCATG
1 TACAAGTTTTATTGCATG
692680 T
1 T
692681 TTGCCCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (18 bp):
TACAAGTTTTATTGCATG
Found at i:696787 original size:37 final size:36
Alignment explanation
Indices: 696741--696843 Score: 93
Period size: 38 Copynumber: 2.8 Consensus size: 36
696731 TTTTACTTAC
* * *
696741 ATTTCGAAAATATGTATAATATATAGTTTTTGAAAGT
1 ATTTTGAAAAAAT-TATAATAAATAGTTTTTGAAAGT
* * *
696778 ATTTTGAAAAAAATATATAATAAATAATTTTAGAACGT
1 ATTTTG-AAAAAAT-TATAATAAATAGTTTTTGAAAGT
* *
696816 -TTTTGAAAACA-TATAATACATAGTTTTT
1 ATTTTGAAAAAATTATAATAAATAGTTTTT
696844 TAAAATTTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
34 14 0.26
36 5 0.09
37 10 0.19
38 25 0.46
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.42
Consensus pattern (36 bp):
ATTTTGAAAAAATTATAATAAATAGTTTTTGAAAGT
Found at i:696958 original size:37 final size:38
Alignment explanation
Indices: 696815--696958 Score: 155
Period size: 38 Copynumber: 3.8 Consensus size: 38
696805 TTTTAGAACG
* * ** *
696815 TTTTTGAAAACATATAATACATAGTTTTTTAAAATTTC
1 TTTTTGAAAACATATAATATATAATTTTTTAAAACATA
* * *
696853 TTTTTGAAAACATATATATAATTTAATTTTTGAAAACGTA
1 TTTTTGAAAACATATA-AT-ATATAATTTTTTAAAACATA
* *
696893 TTTTTGAAAACATATAATATGTAGTTTTTTAAAA-ATA
1 TTTTTGAAAACATATAATATATAATTTTTTAAAACATA
**
696930 TTTTTGAAAACATATAGCATATAATTTTT
1 TTTTTGAAAACATATAATATATAATTTTT
696959 ACAAATGTTT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
37 27 0.30
38 29 0.33
39 4 0.04
40 29 0.33
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.47
Consensus pattern (38 bp):
TTTTTGAAAACATATAATATATAATTTTTTAAAACATA
Found at i:697022 original size:8 final size:9
Alignment explanation
Indices: 697009--697040 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
696999 TCCATTTTCC
697009 ATTTTTTTT
1 ATTTTTTTT
697018 ATTTTTTTT
1 ATTTTTTTT
697027 ATTTTTTCTT
1 ATTTTTT-TT
697037 ATTT
1 ATTT
697041 CAGGTCCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:697025 original size:19 final size:19
Alignment explanation
Indices: 697003--697040 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
696993 TTATTTTCCA
*
697003 TTTTCCATTTTTT-TTATT
1 TTTTTCATTTTTTCTTATT
*
697021 TTTTTTATTTTTTCTTATT
1 TTTTTCATTTTTTCTTATT
697040 T
1 T
697041 CAGGTCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTCATTTTTTCTTATT
Found at i:697063 original size:18 final size:18
Alignment explanation
Indices: 697037--697089 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
697027 ATTTTTTCTT
*
697037 ATTTCAGGTCCAACTCCA
1 ATTTTAGGTCCAACTCCA
*
697055 ATTTTAGGTCAAACTCCA
1 ATTTTAGGTCCAACTCCA
697073 ATTTTAGGTCC-ACTCCA
1 ATTTTAGGTCCAACTCCA
697090 GCCCAAAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.32
Consensus pattern (18 bp):
ATTTTAGGTCCAACTCCA
Found at i:700928 original size:21 final size:21
Alignment explanation
Indices: 700878--700929 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
700868 ATAAACACTG
*
700878 GACATACCACCCCAAGCATTT
1 GACATACCTCCCCAAGCATTT
700899 GACATACCTCCCCAAGCATTT
1 GACATACCTCCCCAAGCATTT
*
700920 GGCATACCTC
1 GACATACCTC
700930 ATCCACATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.21
Consensus pattern (21 bp):
GACATACCTCCCCAAGCATTT
Found at i:706733 original size:199 final size:201
Alignment explanation
Indices: 706371--706863 Score: 559
Period size: 199 Copynumber: 2.5 Consensus size: 201
706361 TGTAGTATAA
* * * *
706371 CTCAAGGCGAGAAGGGCTATCTGTCCACAGAGACTTTCGAGTTCGAT-TTCATTCAGCTCGATGA
1 CTCAAGGCGAGAAGGGCTATCTGTCAACAAAAACTTTCGAGTTCGATCCT-ATTCAGCTCGATGA
* * * * *
706435 CATATCAACCGTATGGTAGCAACGAAGAACTATTTTTCGGTTAAAGCTTAAACTGAGGTCTTTAA
65 CAGATCAACCGCATGGTAGCAACGAAGAAATATTTCTCGGTTAAAGCTTAAACTGAAGTCTTTAA
* * *
706500 GTCAAGAAGAAGACCTAGGCAGGCTGCGATTTAGCAACAAGGAACTATCTCTCAGTTAAAATTAC
130 GTCAAGAAGAAGACCTAGGCAGGCTGCGATTTAGCAACAAGGAACTATATCCCAGTCAAAATTAC
706565 AGCATAG
195 AGCATAG
* * *
706572 CTCCAGGCGAGAAGGGTTATCTGTCAACAAAAAATTTCGAGTTCGATCCTATTCAGCTCGA-GA-
1 CTCAAGGCGAGAAGGGCTATCTGTCAACAAAAACTTTCGAGTTCGATCCTATTCAGCTCGATGAC
* * * * *
706635 AGGGTTAACCGCATGGTAGCAGCGAGGAAATACTTTCT-GGTT-AAGTTTAAACTGAAGTCTTTA
66 A-GATCAACCGCATGGTAGCAACGAAGAAATA-TTTCTCGGTTAAAGCTTAAACTGAAGTCTTTA
* * *** *
706698 AGTCAAGAAGAAGACTTGGGTTTGCTGCGATTTAGCAACAAGGAACTATATCCCAGTCAAATTTA
129 AGTCAAGAAGAAGACCTAGGCAGGCTGCGATTTAGCAACAAGGAACTATATCCCAGTCAAAATTA
706763 CAGCATAG
194 CAGCATAG
* * * * * * * *
706771 CTCAAGGTGAAAAGGGCTATCTATCAACAAAAACCTTCGAGTTCTATTCC-ATTCAGCTTGAGGG
1 CTCAAGGCGAGAAGGGCTATCTGTCAACAAAAACTTTCGAGTTCGA-TCCTATTCAGCTCGATGA
* * * *
706835 CATATCAGCCACATGGTAGCATCG-AGAAA
65 CAGATCAACCGCATGGTAGCAACGAAGAAA
706864 CTACTTTCCG
Statistics
Matches: 243, Mismatches: 43, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
199 136 0.56
200 49 0.20
201 57 0.23
202 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (201 bp):
CTCAAGGCGAGAAGGGCTATCTGTCAACAAAAACTTTCGAGTTCGATCCTATTCAGCTCGATGAC
AGATCAACCGCATGGTAGCAACGAAGAAATATTTCTCGGTTAAAGCTTAAACTGAAGTCTTTAAG
TCAAGAAGAAGACCTAGGCAGGCTGCGATTTAGCAACAAGGAACTATATCCCAGTCAAAATTACA
GCATAG
Found at i:707339 original size:39 final size:37
Alignment explanation
Indices: 707239--707487 Score: 346
Period size: 37 Copynumber: 6.7 Consensus size: 37
707229 GGTTTTACTT
*
707239 ACATTTCGAAAATATATATAATATATAGTTTTTGAAA
1 ACATTTTGAAAATATATATAATATATAGTTTTTGAAA
*
707276 ACATTTTGAAAATACATATAATATATAGTTTTTGAAA
1 ACATTTTGAAAATATATATAATATATAGTTTTTGAAA
*
707313 ACATTTTGAAAATACATATAATATATAG-TTTTGAAA
1 ACATTTTGAAAATATATATAATATATAGTTTTTGAAA
* * *
707349 ACATTTT-TAAA-ATATATAATATA-CGGTTTTGAAA
1 ACATTTTGAAAATATATATAATATATAGTTTTTGAAA
*
707383 ATATTTTGACAAATATATATAATATATAG-TTTTGAAA
1 ACATTTTGA-AAATATATATAATATATAGTTTTTGAAA
707420 ACATTTTGAAAAAATATATATAATATATAGTTTTTGAAA
1 ACATTTTG--AAAATATATATAATATATAGTTTTTGAAA
*
707459 ACATTTTTAAAATATATATATAATATATA
1 ACA-TTTTGAAA-ATATATATAATATATA
707488 ATATATAATT
Statistics
Matches: 192, Mismatches: 10, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
33 1 0.01
34 25 0.13
35 3 0.02
36 18 0.09
37 90 0.47
38 23 0.12
39 28 0.15
40 4 0.02
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.41
Consensus pattern (37 bp):
ACATTTTGAAAATATATATAATATATAGTTTTTGAAA
Found at i:707472 original size:28 final size:28
Alignment explanation
Indices: 707423--707476 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
707413 TTTGAAAACA
*
707423 TTTTGAAAAAATATATATAATATATAGT
1 TTTTGAAAAAATATATAAAATATATAGT
* * *
707451 TTTTGAAAACATTTTTAAAATATATA
1 TTTTGAAAAAATATATAAAATATATA
707477 TATAATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (28 bp):
TTTTGAAAAAATATATAAAATATATAGT
Found at i:707526 original size:46 final size:46
Alignment explanation
Indices: 707435--707526 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 46
707425 TTGAAAAAAT
* *
707435 ATATATAATATATAGTTTTTGAAAACATTTTTAAAATATATATATA
1 ATATATAATATATAGATTTTGAAAACATTTTTAAAACATATATATA
* **
707481 ATATATAATATATA-ATTTT-AGAATGTTTTTGAAAACATATAATATA
1 ATATATAATATATAGATTTTGAAAACATTTTT-AAAACATAT-ATATA
707527 TAGTTTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
44 8 0.21
45 12 0.31
46 19 0.49
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (46 bp):
ATATATAATATATAGATTTTGAAAACATTTTTAAAACATATATATA
Found at i:707589 original size:14 final size:14
Alignment explanation
Indices: 707570--707598 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
707560 TATAATATAG
707570 TTTTTGAAAACATA
1 TTTTTGAAAACATA
707584 TTTTTGAAAACATA
1 TTTTTGAAAACATA
707598 T
1 T
707599 AATGTATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (14 bp):
TTTTTGAAAACATA
Found at i:707608 original size:38 final size:37
Alignment explanation
Indices: 707506--707666 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 37
707496 TTTTAGAATG
* *
707506 TTTTTGAAAACATATAATATATAGTTTTTTAAAATTTC
1 TTTTTGAAAACATATAATATATAGTTTTTTAAAA-ATA
* *
707544 TTTTTGAAAACGTATATATAATATAGTTTTTGAAAACATA
1 TTTTTGAAAACATATA-AT-ATATAGTTTTTTAAAA-ATA
*
707584 TTTTTGAAAACATATAATGTATAGTTTTTTAAAAATA
1 TTTTTGAAAACATATAATATATAGTTTTTTAAAAATA
* * ** * *
707621 ATTTTGAAAACAAATAGCATATA-ATTTTTAAAAATGT
1 TTTTTGAAAACATATAATATATAGTTTTTTAAAAAT-A
707658 TTTTTGAAA
1 TTTTTGAAA
707667 TATATACATT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
36 11 0.11
37 29 0.28
38 29 0.28
39 4 0.04
40 31 0.30
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAACATATAATATATAGTTTTTTAAAAATA
Found at i:707663 original size:37 final size:36
Alignment explanation
Indices: 707483--707666 Score: 156
Period size: 37 Copynumber: 4.9 Consensus size: 36
707473 TATATATAAT
* *
707483 ATATAATATATAA-TTTT-AGAATGTTTTTGAAAAC
1 ATATAATATATAATTTTTAAAAATATTTTTGAAAAC
* * *
707517 ATATAATATATAGTTTTTTAAAATTTCTTTTTGAAAAC
1 ATATAATATATA-ATTTTTAAAA-ATATTTTTGAAAAC
* *
707555 GTATATATAATATAGTTTTTGAAAACATATTTTTGAAAAC
1 ATATA-AT-ATATAATTTTT-AAAA-ATATTTTTGAAAAC
* * *
707595 ATATAATGTATAGTTTTTTAAAAATAATTTTGAAAAC
1 ATATAATATATA-ATTTTTAAAAATATTTTTGAAAAC
* ** *
707632 AAATAGCATATAATTTTTAAAAATGTTTTTTGAAA
1 ATATAATATATAATTTTTAAAAAT-ATTTTTGAAA
707667 TATATACATT
Statistics
Matches: 121, Mismatches: 20, Indels: 15
0.78 0.13 0.10
Matches are distributed among these distances:
34 12 0.10
36 15 0.12
37 31 0.26
38 24 0.20
39 14 0.12
40 25 0.21
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (36 bp):
ATATAATATATAATTTTTAAAAATATTTTTGAAAAC
Found at i:724727 original size:13 final size:13
Alignment explanation
Indices: 724709--724744 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
724699 TTTTAAGATT
724709 TTGAAATCAAGTG
1 TTGAAATCAAGTG
*
724722 TTGAAATCAAGTT
1 TTGAAATCAAGTG
724735 TTGAAATCAA
1 TTGAAATCAA
724745 AAAGACATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (13 bp):
TTGAAATCAAGTG
Found at i:727024 original size:21 final size:21
Alignment explanation
Indices: 726998--727037 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
726988 TAGTACCCCA
*
726998 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
727019 GGGGGGAATCGATTCCCCT
1 GGGGGGAATCGATTCCCCT
727038 TCAAAGGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.25, G:0.38, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:730923 original size:22 final size:21
Alignment explanation
Indices: 730881--730920 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
730871 GAGCTTATTT
*
730881 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
730902 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
730921 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:736518 original size:8 final size:8
Alignment explanation
Indices: 736502--736566 Score: 69
Period size: 8 Copynumber: 8.1 Consensus size: 8
736492 TTTTAACTTC
736502 AAAATTTT
1 AAAATTTT
*
736510 AAAAATTT
1 AAAATTTT
*
736518 ACATATTTT
1 A-AAATTTT
* * *
736527 -TAACTTC
1 AAAATTTT
736534 AAAATTTT
1 AAAATTTT
736542 AAAATTTT
1 AAAATTTT
736550 AAAATTTT
1 AAAATTTT
736558 AAAATTTT
1 AAAATTTT
736566 A
1 A
736567 TTTACATATT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
7 3 0.07
8 37 0.82
9 5 0.11
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (8 bp):
AAAATTTT
Found at i:736530 original size:32 final size:32
Alignment explanation
Indices: 736489--736550 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
736479 AGTTTGATAT
736489 TATTTTTAACTTCAAAATTTTAAAAATTTACA
1 TATTTTTAACTTCAAAATTTTAAAAATTTACA
*
736521 TATTTTTAACTTCAAAATTTTAAAATTTTA
1 TATTTTTAACTTCAAAATTTTAAAAATTTA
736551 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (32 bp):
TATTTTTAACTTCAAAATTTTAAAAATTTACA
Found at i:741938 original size:30 final size:30
Alignment explanation
Indices: 741904--741986 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
741894 TTGCCACCTG
*
741904 TTTCTGACCCAGCACCTGTGTTTGCGCCCA
1 TTTCTGACCCAGCACCTGTGTTTGAGCCCA
** * * *
741934 TTTCTGACCCAATACCTGAGTCTGAGTCCA
1 TTTCTGACCCAGCACCTGTGTTTGAGCCCA
*
741964 TTTCTGAACCAGCACCTGCTGTT
1 TTTCTGACCCAGCACCTG-TGTT
741987 GTACCACAAC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
30 39 0.95
31 2 0.05
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (30 bp):
TTTCTGACCCAGCACCTGTGTTTGAGCCCA
Found at i:743424 original size:24 final size:24
Alignment explanation
Indices: 743397--743444 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
743387 CTCTGCTGAA
743397 GCAGAGTATAGAAGTATGGTAGTG
1 GCAGAGTATAGAAGTATGGTAGTG
743421 GCAGAGTATAGAAGTATGGTAGTG
1 GCAGAGTATAGAAGTATGGTAGTG
743445 ACTGTGTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.38, T:0.25
Consensus pattern (24 bp):
GCAGAGTATAGAAGTATGGTAGTG
Found at i:744971 original size:3 final size:3
Alignment explanation
Indices: 744963--745000 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
744953 TATCAATTAA
744963 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
745001 CTTTCTGGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:747205 original size:24 final size:24
Alignment explanation
Indices: 747127--747215 Score: 96
Period size: 23 Copynumber: 3.8 Consensus size: 24
747117 ACATATTATA
*
747127 TGGCACTACGGTGC-AATTCTACG
1 TGGCACTTCGGTGCAAATTCTACG
* *
747150 TGGAACTTCGGTGC-ATTTCTACG
1 TGGCACTTCGGTGCAAATTCTACG
*
747173 CGGTC-CTTCGG-GACAAATTCTACG
1 TGG-CACTTCGGTG-CAAATTCTACG
747197 TGGCACTTCGGTGCAAATT
1 TGGCACTTCGGTGCAAATT
747216 TATATGAGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
22 1 0.02
23 30 0.56
24 22 0.41
25 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (24 bp):
TGGCACTTCGGTGCAAATTCTACG
Found at i:752063 original size:31 final size:32
Alignment explanation
Indices: 752011--752072 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
752001 ATATGCATGA
* * *
752011 AAAATTATATGTGTTATGTGATAAAGGTATGG
1 AAAATGATATGTGCTATGTGATAAAGATATGG
752043 AAAATGATATGT-CTATGTGATAAAGATATG
1 AAAATGATATGTGCTATGTGATAAAGATATG
752073 TGAATTGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (32 bp):
AAAATGATATGTGCTATGTGATAAAGATATGG
Found at i:752867 original size:11 final size:11
Alignment explanation
Indices: 752853--752886 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
752843 GTTTTATGGA
*
752853 AATACTGTAGC
1 AATATTGTAGC
752864 AATATTGTAGC
1 AATATTGTAGC
*
752875 AGTATTGTAGC
1 AATATTGTAGC
752886 A
1 A
752887 GGGCTATCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (11 bp):
AATATTGTAGC
Found at i:752887 original size:11 final size:11
Alignment explanation
Indices: 752858--752887 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
752848 ATGGAAATAC
*
752858 TGTAGCAATAT
1 TGTAGCAGTAT
752869 TGTAGCAGTAT
1 TGTAGCAGTAT
752880 TGTAGCAG
1 TGTAGCAG
752888 GGCTATCGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (11 bp):
TGTAGCAGTAT
Found at i:752921 original size:21 final size:22
Alignment explanation
Indices: 752880--752923 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
752870 GTAGCAGTAT
*
752880 TGTAGCAGGGCTATCGGTACCC
1 TGTAGCAGGGCTATCGATACCC
*
752902 TGTAGCATGG-TATCGATACCC
1 TGTAGCAGGGCTATCGATACCC
752923 T
1 T
752924 ATTTGTAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.27
Consensus pattern (22 bp):
TGTAGCAGGGCTATCGATACCC
Found at i:755602 original size:19 final size:18
Alignment explanation
Indices: 755542--755629 Score: 55
Period size: 17 Copynumber: 5.1 Consensus size: 18
755532 TTTATGTTAG
755542 TATTTTT-TTAAATAGTTA
1 TATTTTTATTAAATA-TTA
755560 T-TATTTT-TT--ATATTAA
1 TAT-TTTTATTAAATATT-A
*
755576 TATATTTATGTAAATATTA
1 TATTTTTAT-TAAATATTA
*
755595 TATTTTTATTAAA-ATAA
1 TATTTTTATTAAATATTA
* *
755612 TATTTATA-TAATTATTA
1 TATTTTTATTAAATATTA
755629 T
1 T
755630 TTATTTAGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
15 2 0.04
16 11 0.20
17 17 0.30
18 12 0.21
19 9 0.16
20 5 0.09
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TATTTTTATTAAATATTA
Found at i:755635 original size:36 final size:33
Alignment explanation
Indices: 755548--755636 Score: 85
Period size: 34 Copynumber: 2.7 Consensus size: 33
755538 TTAGTATTTT
* *
755548 TTTAAATAGTTATTATTT-TTTATATTAATATA
1 TTTATATAATTATTATTTATTTATATTAATATA
* * *
755580 TTTATGTAAATATTATATT-TTTAT-TAAAATAATA
1 TTTATATAATTATTAT-TTATTTATAT-TAAT-ATA
755614 TTTATATAATTATTATTTATTTA
1 TTTATATAATTATTATTTATTTA
755637 GAATTATTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
32 13 0.28
33 12 0.26
34 21 0.46
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (33 bp):
TTTATATAATTATTATTTATTTATATTAATATA
Found at i:755801 original size:17 final size:17
Alignment explanation
Indices: 755779--755832 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
755769 AATGTTAATA
755779 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
755796 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
755813 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
755830 TTT
1 TTT
755833 TTATAATGTA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:757396 original size:20 final size:21
Alignment explanation
Indices: 757352--757398 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
757342 GCAGGGGTAC
* *
757352 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
*
757373 ATGCCAAGCCCACCAGTT-AT
1 ATGCCAAGCCCACCACTTCAT
757393 ATGCCA
1 ATGCCA
757399 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.26, C:0.40, G:0.13, T:0.21
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:757426 original size:21 final size:21
Alignment explanation
Indices: 757402--757474 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
757392 TATGCCATCT
*
757402 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCAAGC
757423 CCGCAGGGTTACATTCCAAGC
1 CCGCAGGGTTACATTCCAAGC
* *
757444 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATTCCAAGC
*
757465 CCGTAGGGTT
1 CCGCAGGGTT
757475 TTATACCATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.02
21 43 0.93
22 2 0.04
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCAAGC
Found at i:758040 original size:33 final size:32
Alignment explanation
Indices: 757990--758085 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 32
757980 ATAAATGTTT
*
757990 TAAAATACAAATTATATTATTCAAAATTTAAAA
1 TAAAATAAAAATTATATTATTC-AAATTTAAAA
* *
758023 TAAAATAAAAATAATATTATTCAAATTTAAAT
1 TAAAATAAAAATTATATTATTCAAATTTAAAA
* * *
758055 TTAAATATAAATTATAGTATTCGAAATTTAA
1 TAAAATAAAAATTATATTATTC-AAATTTAA
758086 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 27 0.49
33 28 0.51
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (32 bp):
TAAAATAAAAATTATATTATTCAAATTTAAAA
Found at i:758792 original size:126 final size:127
Alignment explanation
Indices: 758485--759737 Score: 2104
Period size: 126 Copynumber: 9.9 Consensus size: 127
758475 TTACCTGATT
*
758485 TACTGATATA--TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTA
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
** * *** *
758548 TGATAAAATAATGGAAGGCGCGCCCCCAGGAACGCGCCTTCATGTCCCCT-GAGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGT-GAATAGTGAAATAATAGG
* *
758611 TATTGATATATCTAGTATCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
758676 TGATGAAATAATGGAAGGCGCGCCCCCGGGAA-CGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAAGCGCCTTCATGTGAATAGTGAAATAATAGG
758737 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
* *
758802 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACACGCCTTCATATGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
758865 TACTGATATATCTAGTGTCCCCGAGGGACA-GAGTGACATAATAGGGC-ATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
758928 TGACGAAATAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
*
758991 TACTGATATATCTAGTGTCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759056 TGACGAAAT-ATGGAAGGAAGCGCCCCC-GGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGG-CGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
*
759118 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATATGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
759183 TGACGAAATAATGGAAGGCGCGCCCCCGGGAATGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
759246 TACTG--ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
759309 TGACGAAATAATGGAA-G-GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
759370 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759435 TGACGAAATAATGGAAGGCGCGCCCCC-GGAACACGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
*
759497 TACTGATATATCTAGTGTCTCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATA-TCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759561 TGACGAAATAATGGAAGGCGCGCCCCC-GGAACGCGCCTTCATGTGAATAGTAAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATAGTGAAATAATAGG
*
759623 TATTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759688 TGACGAAATAATGGAAGGCGCGCCCCTGGGAACGCGCCTTCATGTGAATA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAA-GCGCCTTCATGTGAATA
759738 ATACTCCGAT
Statistics
Matches: 1079, Mismatches: 32, Indels: 30
0.95 0.03 0.03
Matches are distributed among these distances:
124 48 0.04
125 2 0.00
126 501 0.46
127 279 0.26
128 249 0.23
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (127 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAAGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:759141 original size:253 final size:256
Alignment explanation
Indices: 758485--759737 Score: 2169
Period size: 253 Copynumber: 4.9 Consensus size: 256
758475 TTACCTGATT
*
758485 TACTGATATA--TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTA
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
** * *** *
758548 TGATAAAATAATGGAAGGCGCGCCCCCAGGAACGCGCCTTCATGTCCCCT-GAGAAATAATAGGT
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGT-GAATAGTGAAATAATAGGT
* *
758612 ATTGATATATCTAGTATCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
130 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
*
758677 GATGAAATAATGGAAGGCGCGCCCCCGGGAA--CGCCTTCATGTGAATAGTGAAATAATAGG
195 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
758737 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
* *
758802 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACACGCCTTCATATGAATAGTGAAATAATAGGTA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
758867 CTGATATATCTAGTGTCCCCGAGGGACA-GAGTGACATAATAGGGC-ATGATAACATATTCTCTG
131 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
*
758930 ACGAAATAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
196 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
758991 TACTGATATATCTAGTGTCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759056 TGACGAAAT-ATGGAAGGAAGCGCCCCC-GGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
66 TGACGAAATAATGGAAGG-CGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
*
759119 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATATGGCAATGATAACATATTCTCT
130 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
*
759184 GACGAAATAATGGAAGGCGCGCCCCCGGGAATGCGCCTTCATGTGAATAGTGAAATAATAGG
195 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
759246 TACTG--ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
759309 TGACGAAATAATGGAA-G-GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
759372 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
131 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
*
759437 ACGAAATAATGGAAGGCGCGCCCCC-GGAACACGCCTTCATGTGAATAGTGAAATAATAGG
196 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
759497 TACTGATATATCTAGTGTCTCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATA-TCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759561 TGACGAAATAATGGAAGGCGCGCCCCC-GGAACGCGCCTTCATGTGAATAGTAAAATAATAGGTA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
*
759625 TTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
131 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
*
759690 ACGAAATAATGGAAGGCGCGCCCCTGGGAACGCGCCTTCATGTGAATA
196 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
759738 ATACTCCGAT
Statistics
Matches: 956, Mismatches: 30, Indels: 28
0.94 0.03 0.03
Matches are distributed among these distances:
251 46 0.05
252 202 0.21
253 333 0.35
254 293 0.31
255 82 0.09
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (256 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:759416 original size:379 final size:381
Alignment explanation
Indices: 758485--759737 Score: 2159
Period size: 379 Copynumber: 3.3 Consensus size: 381
758475 TTACCTGATT
* *
758485 TACTG-ATATATAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTAT
1 TACTGAATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
** * *** *
758549 GATAAAATAATGGAAGGCGCGCCCCCAGGAACGCGCCTTCATGTCCCCT-GAGAAATAATAGGTA
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGT-GAATAGTGAAATAATAGGTA
* *
758613 TTGATATATCTAGTATCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
130 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
*
758678 ATGAAATAATGGAAGGCGCGCCCCCGGGAA-CGCCTTCATGTGAATAGTGAAATAATAGGTACTG
195 ACGAAATAATGGAAGGCGCGCCCCC-GGAACCGCCTTCATGTGAATAGTGAAATAATAGGTACTG
758742 ATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACG
259 ATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACG
* *
758807 AAATAATGGAAGGCGCGCCCCCGGGAACACGCCTTCATATGAATAGTGAAATAATAGG
324 AAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
758865 TACTGATATATCTAGTGTCCCCGAGGGACA-GAGTGACATAATAGGGC-ATGATAACATATTCTC
1 TACTGA-ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
758928 TGACGAAATAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
65 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
*
758993 CTGATATATCTAGTGTCCCCGAGGGACATAAGTGACATAATAGGGCAATGATAACATATTCTCTG
130 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
*
759058 ACGAAAT-ATGGAAGGAAGCGCCCCCGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACT
195 ACGAAATAATGGAAGG-CGCGCCCCCGGAAC-CGCCTTCATGTGAATAGTGAAATAATAGGTACT
*
759122 GATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATATGGCAATGATAACATATTCTCTGAC
258 GATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGAC
*
759187 GAAATAATGGAAGGCGCGCCCCCGGGAATGCGCCTTCATGTGAATAGTGAAATAATAGG
323 GAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
759246 TACTG-ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
1 TACTGAATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
759310 GACGAAATAATGGAA-G-GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
759373 TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGA
131 TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGA
759438 CGAAATAATGGAAGGCGCGCCCCCGGAACACGCCTTCATGTGAATAGTGAAATAATAGGTACTGA
196 CGAAATAATGGAAGGCGCGCCCCCGGAAC-CGCCTTCATGTGAATAGTGAAATAATAGGTACTGA
*
759503 TATATCTAGTGTCTCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATA-TCTCTGACGA
260 TATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACGA
*
759567 AATAATGGAAGGCGCGCCCCC-GGAACGCGCCTTCATGTGAATAGTAAAATAATAGG
325 AATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
759623 TATTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGA-ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
759688 TGACGAAATAATGGAAGGCGCGCCCCTGGGAACGCGCCTTCATGTGAATA
65 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
759738 ATACTCCGAT
Statistics
Matches: 831, Mismatches: 29, Indels: 25
0.94 0.03 0.03
Matches are distributed among these distances:
377 37 0.04
378 31 0.04
379 327 0.39
380 178 0.21
381 236 0.28
382 22 0.03
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (381 bp):
TACTGAATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGA
CGAAATAATGGAAGGCGCGCCCCCGGAACCGCCTTCATGTGAATAGTGAAATAATAGGTACTGAT
ATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACGAA
ATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:759820 original size:8 final size:8
Alignment explanation
Indices: 759807--759846 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
759797 TCACAATCTT
759807 TCAAATTC
1 TCAAATTC
759815 TCAAATTC
1 TCAAATTC
* *
759823 CCAAACTC
1 TCAAATTC
759831 T-AAATTC
1 TCAAATTC
759838 TCAAATTC
1 TCAAATTC
759846 T
1 T
759847 TTGAAAATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (8 bp):
TCAAATTC
Found at i:761708 original size:400 final size:390
Alignment explanation
Indices: 760937--761726 Score: 1331
Period size: 400 Copynumber: 2.0 Consensus size: 390
760927 TGCGTCCAAG
*
760937 TGACAACGATGTCATGGATGGTCTGTGTATCAAAGAGGAAGAGAAGAACAACTTATGGGAACTAA
1 TGACAACGATGTCATGGATGGTCCGTGTATCAAAGAGGAAGAGAAGAACAACTTATGGGAACTAA
761002 CCAGATACACAGTCCATACATGTTGTGCAACAAGTATAAACCAGGATCATCCCAACTTGGACTCC
66 CCAGATACACAGTCCATACATGTTGTGCAACAAGTATAAACCAGGATCATCCCAACTTGGACTCC
761067 AACATTTGTCAGCAATCATGCCCATGTGAAGCAAAGCTCTCATATAGCTGTTGCAGTGTTTGATT
131 AACATTTGTCAGCAATCATGCCCATGTGAAGCAAAGCTCTCATATAGCTGTTGCAGTGTTTGATT
761132 TCTGCTATACAGTCACAATAGGGTACCTGTCTCATATAAAAAAGCGTGTTGGCAAACAGAATGCC
196 TCTGCTATACAGTCACAATAGGGTACCTGTCTCATATAAAAAAGCGTGTTGGCAAACAGAATGCC
761197 ATTTGCAAACTTCATGGCGAATGAGATTCCTCTTACAACGAGCTGCCAGTTGGTTTCATGTTGTG
261 ATTTGCAAACTTCATGGCGAATGAGATTCCTCTTACAACGAGCTGCCAGTTGGTTTCATGTTGTG
* *
761262 CAAAGACTTAATCTCGGGACAATTGTTGAGTTTGAAACTAAACATCATTACGTGAATGATCGAAT
326 CAAAGACTTAATCCCGGGACAATTGTTGAGTTCGAAACTAAACATCATTACGTGAATGATCGAAT
761327 TGACAACGGATGTCAATGGATGGTCCGTGTATCAAAGAGGAAGAGGAAGAACAACTTATGGGAAC
1 TGACAAC-GATGTC-ATGGATGGTCCGTGTATCAAAGAGGAAGA-GAAGAACAACTTATGGGAAC
* *
761392 TAACCA-ATACAACGGTCCTCATACATGTTGTGCAACAGGTATAAACCAGGATCATCCCAACTTG
63 TAACCAGATAC-ACAGT-C-CATACATGTTGTGCAACAAGTATAAACCAGGATCATCCCAACTTG
761456 GACTCCAACATTATTTGTCAAGCAATCATGCCCATTGTGAAGC-AAGCTCTCATATAGCTGTTGC
125 GACTCCAAC---ATTTGTC-AGCAATCATGCCCA-TGTGAAGCAAAGCTCTCATATAGCTGTTGC
761520 AGTG-TTGATTTCTGCTATACAGTCAC-ATATGGGTACACTGTCTCATAT-AAAAAGCGTGGTTG
185 AGTGTTTGATTTCTGCTATACAGTCACAATA-GGGTAC-CTGTCTCATATAAAAAAGCGT-GTTG
*
761582 GCAAAACAGAATGCCATTTGCAAACTTCATGGCGAATGGGATTCCTCTTACAACGA-CTGCCCAG
247 GC-AAACAGAATGCCATTTGCAAACTTCATGGCGAATGAGATTCCTCTTACAACGAGCTG-CCAG
*
761646 TTGGTTTCATGTTGTGCAAAGACTTAATCCCGGGACAATTGTTGAGTTCGAAACTCAACATCATT
310 TTGGTTTCATGTTGTGCAAAGACTTAATCCCGGGACAATTGTTGAGTTCGAAACTAAACATCATT
761711 ACGTGAATGATCGAAT
375 ACGTGAATGATCGAAT
761727 GGTTTCGCGA
Statistics
Matches: 377, Mismatches: 7, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
390 7 0.02
391 6 0.02
392 32 0.08
393 30 0.08
394 1 0.00
395 53 0.14
397 3 0.01
398 44 0.12
399 59 0.16
400 142 0.38
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (390 bp):
TGACAACGATGTCATGGATGGTCCGTGTATCAAAGAGGAAGAGAAGAACAACTTATGGGAACTAA
CCAGATACACAGTCCATACATGTTGTGCAACAAGTATAAACCAGGATCATCCCAACTTGGACTCC
AACATTTGTCAGCAATCATGCCCATGTGAAGCAAAGCTCTCATATAGCTGTTGCAGTGTTTGATT
TCTGCTATACAGTCACAATAGGGTACCTGTCTCATATAAAAAAGCGTGTTGGCAAACAGAATGCC
ATTTGCAAACTTCATGGCGAATGAGATTCCTCTTACAACGAGCTGCCAGTTGGTTTCATGTTGTG
CAAAGACTTAATCCCGGGACAATTGTTGAGTTCGAAACTAAACATCATTACGTGAATGATCGAAT
Found at i:768857 original size:105 final size:105
Alignment explanation
Indices: 768678--769459 Score: 1410
Period size: 105 Copynumber: 7.5 Consensus size: 105
768668 CTGCCAGTTG
*
768678 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-AAATTTGAGAAATGTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGA-TTGAGAAATGTT
*
768742 TGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
65 TGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
* *
768783 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGATAAATGTTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
*
768848 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
768888 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-AGGATTGAGAAATGTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA-GATTGAGAAATGTT
*
768952 TGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTA
65 TGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
*
768993 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGAGAAATGTTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
769058 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
*
769098 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGAGAAATGTTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
*
769163 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTAAACTTA
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
*
769203 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
*
769268 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
*
769308 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGAGAAATGTTT
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
769373 GTTGACAACCAGCGGTCCCTTCGTCGTGAA-TTGAACTTA
66 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
769412 CG-TGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
769460 GGTAAAACCT
Statistics
Matches: 659, Mismatches: 15, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
103 46 0.07
104 11 0.02
105 599 0.91
106 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (105 bp):
CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATGTTT
GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA
Found at i:779720 original size:10 final size:10
Alignment explanation
Indices: 779695--779728 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
779685 AGCGTTAGTA
*
779695 AAATAGAAAT
1 AAATAAAAAT
*
779705 AGATAAAAAT
1 AAATAAAAAT
779715 AAATAAAAAT
1 AAATAAAAAT
779725 AAAT
1 AAAT
779729 GGTAAATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:783310 original size:19 final size:19
Alignment explanation
Indices: 783286--783323 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
783276 AGTTTGCATC
783286 GATTACATGAAGTTGAATT
1 GATTACATGAAGTTGAATT
783305 GATTACATGAAGTTGAATT
1 GATTACATGAAGTTGAATT
783324 CACTTACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (19 bp):
GATTACATGAAGTTGAATT
Found at i:786143 original size:3 final size:3
Alignment explanation
Indices: 786135--786178 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
786125 TTCAAGCTCC
786135 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
786179 ACTCATTATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:787404 original size:4 final size:4
Alignment explanation
Indices: 787395--787424 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
787385 ACCTGAATCC
787395 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
787425 TTCTCCTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:788495 original size:30 final size:29
Alignment explanation
Indices: 788438--788497 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
788428 GATTTTATTA
788438 TTTTATTAGGAATTTAGTTTGCATAGAAT
1 TTTTATTAGGAATTTAGTTTGCATAGAAT
* *
788467 TTTTATTTAGGATTTTTAGTTTG-TTAGAAT
1 TTTTA-TTAGGA-ATTTAGTTTGCATAGAAT
788497 T
1 T
788498 AAGCGTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 5 0.19
30 13 0.48
31 9 0.33
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.55
Consensus pattern (29 bp):
TTTTATTAGGAATTTAGTTTGCATAGAAT
Found at i:801229 original size:23 final size:22
Alignment explanation
Indices: 801203--801250 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
801193 TAAGGTTCTA
* * *
801203 TTCAATTTTGTTTTTCGTTTATT
1 TTCAACTTTATTTTTCATTT-TT
801226 TTCAACTTTATTTTTCATTTTT
1 TTCAACTTTATTTTTCATTTTT
801248 TTC
1 TTC
801251 TCTTTGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.15, C:0.12, G:0.04, T:0.69
Consensus pattern (22 bp):
TTCAACTTTATTTTTCATTTTT
Found at i:802035 original size:83 final size:84
Alignment explanation
Indices: 801937--802105 Score: 322
Period size: 83 Copynumber: 2.0 Consensus size: 84
801927 TATTGTGATA
801937 TTTGTATTTATTATGTTTTAGTCACAATTTTATTTGTGATTTATTCAC-TTTTTATATATTTTAT
1 TTTGTATTTATTATGTTTTAGTCACAATTTTATTTGTGATTTATTCACTTTTTTATATATTTTAT
802001 TATGTTTTAATCCTTTAAT
66 TATGTTTTAATCCTTTAAT
*
802020 TTTGTATTTATTATGTTTTAGTCACTATTTTATTTGTGATTTATTCACTTTTTTATATATTTTAT
1 TTTGTATTTATTATGTTTTAGTCACAATTTTATTTGTGATTTATTCACTTTTTTATATATTTTAT
802085 TATGTTTTAATCCTTTAAT
66 TATGTTTTAATCCTTTAAT
802104 TT
1 TT
802106 CTAGCTTTAT
Statistics
Matches: 84, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 47 0.56
84 37 0.44
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (84 bp):
TTTGTATTTATTATGTTTTAGTCACAATTTTATTTGTGATTTATTCACTTTTTTATATATTTTAT
TATGTTTTAATCCTTTAAT
Found at i:802261 original size:21 final size:22
Alignment explanation
Indices: 802237--802277 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
802227 CTATTAATTA
*
802237 CTTTTAATTTA-TTTGATTTGC
1 CTTTTAATTTAGTTTAATTTGC
*
802258 CTTTTTATTTAGTTTAATTT
1 CTTTTAATTTAGTTTAATTT
802278 CAGTCCTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (22 bp):
CTTTTAATTTAGTTTAATTTGC
Found at i:802289 original size:14 final size:14
Alignment explanation
Indices: 802270--802305 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
802260 TTTTATTTAG
*
802270 TTTAATTTCAGTCC
1 TTTAATTTCAGTAC
*
802284 TTTAATTTCATTAC
1 TTTAATTTCAGTAC
802298 TTTAATTT
1 TTTAATTT
802306 TCTGTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.25, C:0.14, G:0.03, T:0.58
Consensus pattern (14 bp):
TTTAATTTCAGTAC
Found at i:803848 original size:13 final size:13
Alignment explanation
Indices: 803830--803854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
803820 TCGAATATAC
803830 TTAGAAAATCTTT
1 TTAGAAAATCTTT
803843 TTAGAAAATCTT
1 TTAGAAAATCTT
803855 AAAATTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
TTAGAAAATCTTT
Found at i:818088 original size:17 final size:18
Alignment explanation
Indices: 818063--818096 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
818053 CCGAAAGTTA
818063 AATTGAACTAAA-AAATC
1 AATTGAACTAAATAAATC
*
818080 AATTTAACTAAATAAAT
1 AATTGAACTAAATAAAT
818097 AAAATATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
AATTGAACTAAATAAATC
Found at i:819909 original size:27 final size:25
Alignment explanation
Indices: 819879--819942 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
819869 TTTAATTTGT
*
819879 CATTTTTTTATAAGGCACTAAAAGTGA
1 CATTTTATTAT-AGGCAC-AAAAGTGA
* *
819906 CATTTTATTATTGTCACAAAAGTGA
1 CATTTTATTATAGGCACAAAAGTGA
*
819931 CAATTTAATTAT
1 C-ATTTTATTAT
819943 TGTCATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 9 0.28
26 13 0.41
27 10 0.31
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (25 bp):
CATTTTATTATAGGCACAAAAGTGA
Found at i:819926 original size:25 final size:26
Alignment explanation
Indices: 819898--819947 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
819888 ATAAGGCACT
*
819898 AAAAGTGAC-ATTTTATTATTGTCAC
1 AAAAGTGACAATTTAATTATTGTCAC
819923 AAAAGTGACAATTTAATTATTGTCA
1 AAAAGTGACAATTTAATTATTGTCA
819948 TATATGAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
AAAAGTGACAATTTAATTATTGTCAC
Found at i:820078 original size:25 final size:25
Alignment explanation
Indices: 820042--820106 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
820032 TTTTAATAAT
820042 AAAAAAATTCTTTAATATTCAATCC
1 AAAAAAATTCTTTAATATTCAATCC
*
820067 AAAAAAACTCTTTAATATTCAATCC
1 AAAAAAATTCTTTAATATTCAATCC
820092 AAAAAAATTCTTTAA
1 AAAAAAATTCTTTAA
820107 AATATATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAAAAATTCTTTAATATTCAATCC
Found at i:820260 original size:20 final size:20
Alignment explanation
Indices: 820235--820272 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
820225 TTAATAACTA
*
820235 TTTTAAATTATTTAAATTAT
1 TTTTAAATTATCTAAATTAT
*
820255 TTTTAATTTATCTAAATT
1 TTTTAAATTATCTAAATT
820273 TTCTATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAAATTATCTAAATTAT
Found at i:820368 original size:21 final size:22
Alignment explanation
Indices: 820327--820371 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
820317 GAGGTAATTT
820327 TTTAACTTCCCTCCAAATAAAA
1 TTTAACTTCCCTCCAAATAAAA
* *
820349 TTTACCTTCCCT-CTAATAAAA
1 TTTAACTTCCCTCCAAATAAAA
820370 TT
1 TT
820372 GAATATTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAACTTCCCTCCAAATAAAA
Found at i:836163 original size:16 final size:16
Alignment explanation
Indices: 836142--836173 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
836132 ATAAATAAAC
836142 GAACATAAACAAACAA
1 GAACATAAACAAACAA
*
836158 GAACATAAACGAACAA
1 GAACATAAACAAACAA
836174 TTTTTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.19, G:0.09, T:0.06
Consensus pattern (16 bp):
GAACATAAACAAACAA
Found at i:836263 original size:13 final size:13
Alignment explanation
Indices: 836234--836273 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
836224 GTTCATTTAA
836234 ATAATAAACGAAC
1 ATAATAAACGAAC
836247 ---ATAAACGAAC
1 ATAATAAACGAAC
*
836257 ATAATAAATGAAC
1 ATAATAAACGAAC
836270 ATAA
1 ATAA
836274 AAGAACAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 10 0.43
13 13 0.57
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.17
Consensus pattern (13 bp):
ATAATAAACGAAC
Found at i:836264 original size:23 final size:23
Alignment explanation
Indices: 836234--836280 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
836224 GTTCATTTAA
*
836234 ATAATAAACGAACATAAACGAAC
1 ATAATAAACGAACATAAAAGAAC
*
836257 ATAATAAATGAACATAAAAGAAC
1 ATAATAAACGAACATAAAAGAAC
836280 A
1 A
836281 ATACAAACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.13, G:0.09, T:0.15
Consensus pattern (23 bp):
ATAATAAACGAACATAAAAGAAC
Found at i:842790 original size:25 final size:25
Alignment explanation
Indices: 842762--842842 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
842752 AATATAATAC
842762 TAACTCTTAGAAAGTTAGATAAAGA
1 TAACTCTTAGAAAGTTAGATAAAGA
* * * **
842787 TAACTAC-TACG-TAGTTTAGTTTAACT
1 TAACT-CTTA-GAAAG-TTAGATAAAGA
*
842813 TAACTCTTAGAAAGTTAGATAAGGA
1 TAACTCTTAGAAAGTTAGATAAAGA
842838 TAACT
1 TAACT
842843 ACTAAGTAGT
Statistics
Matches: 40, Mismatches: 11, Indels: 10
0.66 0.18 0.16
Matches are distributed among these distances:
25 22 0.55
26 18 0.45
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (25 bp):
TAACTCTTAGAAAGTTAGATAAAGA
Found at i:842824 original size:51 final size:51
Alignment explanation
Indices: 842762--842866 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
842752 AATATAATAC
* *
842762 TAACTCTTAGAAAGTTAGATAAAGATAACTACTACGTAGTTTAGTTTAACT
1 TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
*
842813 TAACTCTTAGAAAGTTAGATAAGGATAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
842864 TAA
1 TAA
842867 ATACTTGTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (51 bp):
TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
Found at i:847043 original size:26 final size:26
Alignment explanation
Indices: 847014--847098 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 26
847004 TAGATAAAGA
847014 TAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTACTAAGTAGTTTAGTTTAAAT
* * *
847040 TAACT-CTTAGAAAG-TTAG-ATAAGGA-
1 TAACTACTAAG-TAGTTTAGTTTAA--AT
847065 TAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTACTAAGTAGTTTAGTTTAAAT
*
847091 TAAATACT
1 TAACTACT
847099 TGTTCTCACC
Statistics
Matches: 45, Mismatches: 7, Indels: 14
0.68 0.11 0.21
Matches are distributed among these distances:
24 3 0.07
25 16 0.36
26 23 0.51
27 3 0.07
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
TAACTACTAAGTAGTTTAGTTTAAAT
Found at i:847051 original size:51 final size:51
Alignment explanation
Indices: 846989--847093 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
846979 AATATAACAC
846989 TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
*
847040 TAACTCTTAGAAAGTTAGATAAGGATAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
847091 TAA
1 TAA
847094 ATACTTGTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (51 bp):
TAACTCTTAGAAAGTTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
Found at i:847068 original size:25 final size:24
Alignment explanation
Indices: 846989--847069 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 24
846979 AATATAACAC
846989 TAACTCTTAGAAAGTTAGATAAAGA
1 TAACTCTTAGAAAGTTAGAT-AAGA
* * *
847014 TAACTACTAAG-TAGTTTAGTTTAA-A
1 TAACT-CTTAGAAAG-TTAG-ATAAGA
847039 TTAACTCTTAGAAAGTTAGATAAGGA
1 -TAACTCTTAGAAAGTTAGATAA-GA
847065 TAACT
1 TAACT
847070 ACTAAGTAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
24 3 0.07
25 21 0.49
26 18 0.42
27 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (24 bp):
TAACTCTTAGAAAGTTAGATAAGA
Found at i:847080 original size:25 final size:24
Alignment explanation
Indices: 847001--847080 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 24
846991 ACTCTTAGAA
847001 AGTTAGATAAAGATAACTACTAAGT
1 AGTTAGAT-AAGATAACTACTAAGT
* * *
847026 AGTTTAGTTTAA-ATTAACT-CTTAGAA
1 AG-TTAG-ATAAGA-TAACTACTAAG-T
847052 AGTTAGATAAGGATAACTACTAAGT
1 AGTTAGATAA-GATAACTACTAAGT
847077 AGTT
1 AGTT
847081 TAGTTTAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
24 3 0.07
25 20 0.48
26 18 0.43
27 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.34
Consensus pattern (24 bp):
AGTTAGATAAGATAACTACTAAGT
Found at i:853243 original size:24 final size:24
Alignment explanation
Indices: 853215--853265 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
853205 GATTGGGTTA
853215 AACATAAATGAAAGAACATAAACG
1 AACATAAATGAAAGAACATAAACG
* * *
853239 AACATAACTGAACGAACATAACCG
1 AACATAAATGAAAGAACATAAACG
853263 AAC
1 AAC
853266 GTTCACGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.57, C:0.20, G:0.12, T:0.12
Consensus pattern (24 bp):
AACATAAATGAAAGAACATAAACG
Found at i:853252 original size:14 final size:14
Alignment explanation
Indices: 853235--853266 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
853225 AAAGAACATA
*
853235 AACGAACATAACTG
1 AACGAACATAACCG
853249 AACGAACATAACCG
1 AACGAACATAACCG
853263 AACG
1 AACG
853267 TTCACGAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.25, G:0.16, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:853327 original size:43 final size:40
Alignment explanation
Indices: 853277--853377 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 40
853267 TTCACGAACG
* * *
853277 TAAATGAACGAACGAGACCTATGTTCATGTTTGTTCATTTAA
1 TAAATGAACG-ACAAAACCT-TGTTCATGTTCGTTCATTTAA
*
853319 TTAAATGAAC-ACAAAATCTTGTTCATGTTCGTTCATTTAA
1 -TAAATGAACGACAAAACCTTGTTCATGTTCGTTCATTTAA
*
853359 TAAATAAACGCACATAAAC
1 TAAATGAACG-ACA-AAAC
853378 GAACTTCCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
39 8 0.16
40 20 0.41
41 9 0.18
42 3 0.06
43 9 0.18
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (40 bp):
TAAATGAACGACAAAACCTTGTTCATGTTCGTTCATTTAA
Found at i:865346 original size:11 final size:11
Alignment explanation
Indices: 865330--865362 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
865320 AATTTCTTTC
865330 TATTTTTAAAA
1 TATTTTTAAAA
865341 TATTTTTAAAA
1 TATTTTTAAAA
*
865352 T-TTTTAAAAA
1 TATTTTTAAAA
865362 T
1 T
865363 TATAATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:867686 original size:29 final size:29
Alignment explanation
Indices: 867649--867812 Score: 161
Period size: 29 Copynumber: 5.7 Consensus size: 29
867639 AAGTTTTTTC
*
867649 TTTGATTGTAATTTATAAAAACAATTGGAA
1 TTTG-TTGTAATTTATAAAAACATTTGGAA
*
867679 TTTGTTGTAA-TTATAAAAACAATTGGAA
1 TTTGTTGTAATTTATAAAAACATTTGGAA
* ***** *
867707 TTTGTTGTAATTTTTAATTTTTTTTGGCA
1 TTTGTTGTAATTTATAAAAACATTTGGAA
**
867736 TTTGTTGTAATTTATAAAAAGTTTTGGAA
1 TTTGTTGTAATTTATAAAAACATTTGGAA
* ** *
867765 TTTTTTGTAATTTAT-AAAATGTTTGGCA
1 TTTGTTGTAATTTATAAAAACATTTGGAA
867793 TTTGTTTGTAATTTATAAAA
1 TTTG-TTGTAATTTATAAAA
867813 GTTTTGGTCT
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
28 41 0.37
29 64 0.57
30 7 0.06
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (29 bp):
TTTGTTGTAATTTATAAAAACATTTGGAA
Found at i:867696 original size:28 final size:28
Alignment explanation
Indices: 867649--867718 Score: 122
Period size: 28 Copynumber: 2.4 Consensus size: 28
867639 AAGTTTTTTC
867649 TTTGATTGTAATTTATAAAAACAATTGGAA
1 TTTG-TTGTAA-TTATAAAAACAATTGGAA
867679 TTTGTTGTAATTATAAAAACAATTGGAA
1 TTTGTTGTAATTATAAAAACAATTGGAA
867707 TTTGTTGTAATT
1 TTTGTTGTAATT
867719 TTTAATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 30 0.75
29 6 0.15
30 4 0.10
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (28 bp):
TTTGTTGTAATTATAAAAACAATTGGAA
Found at i:867795 original size:28 final size:29
Alignment explanation
Indices: 867701--867842 Score: 137
Period size: 29 Copynumber: 4.9 Consensus size: 29
867691 ATAAAAACAA
* * * ** *
867701 TTGGAATTTGTTGTAATTTTTAATTTTTT
1 TTGGCATTTTTTGTAATTTATAAAATGTT
* *
867730 TTGGCATTTGTTGTAATTTATAAAAAGTT
1 TTGGCATTTTTTGTAATTTATAAAATGTT
*
867759 TTGGAATTTTTTGTAATTTATAAAATG-T
1 TTGGCATTTTTTGTAATTTATAAAATGTT
867787 TTGGCATTTGTTTGTAATTTATAAAA-GTT
1 TTGGCATTT-TTTGTAATTTATAAAATGTT
* *
867816 TTGGTC-TTTATTGTAATATATCAAAAT
1 TTGG-CATTTTTTGTAATTTAT-AAAAT
867843 ATTATTTTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
28 20 0.21
29 75 0.78
30 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.54
Consensus pattern (29 bp):
TTGGCATTTTTTGTAATTTATAAAATGTT
Found at i:867817 original size:57 final size:57
Alignment explanation
Indices: 867653--867842 Score: 186
Period size: 57 Copynumber: 3.3 Consensus size: 57
867643 TTTTTCTTTG
*** * ***
867653 ATTGTAATTTATAAAAACAATTGGAATTTGTTGTAA-TTATAAAAACAATTGGAATTT
1 ATTGTAATTTAT-AAAATGTTTGGCATTTGTTGTAATTTATAAAAAGTTTTGGAATTT
* * ** *
867710 GTTGTAATTTTTAATTTTTTTTGGCATTTGTTGTAATTTATAAAAAGTTTTGGAATTT
1 ATTGTAATTTATAA-AATGTTTGGCATTTGTTGTAATTTATAAAAAGTTTTGGAATTT
* **
867768 TTTGTAATTTATAAAATGTTTGGCATTTGTTTGTAATTTAT-AAAAGTTTTGGTCTTT
1 ATTGTAATTTATAAAATGTTTGGCATTTG-TTGTAATTTATAAAAAGTTTTGGAATTT
*
867825 ATTGTAATATATCAAAAT
1 ATTGTAATTTAT-AAAAT
867843 ATTATTTTTA
Statistics
Matches: 109, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
56 2 0.02
57 61 0.56
58 46 0.42
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (57 bp):
ATTGTAATTTATAAAATGTTTGGCATTTGTTGTAATTTATAAAAAGTTTTGGAATTT
Found at i:867818 original size:86 final size:84
Alignment explanation
Indices: 867625--867841 Score: 202
Period size: 86 Copynumber: 2.5 Consensus size: 84
867615 CAAGTCATTA
* **
867625 TTGTAATTTATTAGAAGTTTTTTCTTTGATTGTAATTTATAAAAACAATTGGAATTTGTTGTAAT
1 TTGTAATTTA-TAAAAGTTTTGGCTTTG-TTGTAATTTATAAAAACAATTGGAATTTGTTGTAAT
867690 TATAAAAACAATTGGAATTTG
64 TATAAAAACAATTGGAATTTG
* *** *** *
867711 TTGTAATTTTTAATTTTTTTTGGCATTTGTTGTAATTTATAAAAAGTTTTGGAATTTTTTGTAAT
1 TTGTAATTTATAA-AAGTTTTGGC-TTTGTTGTAATTTATAAAAACAATTGGAATTTGTTGTAAT
*** *
867776 T-TATAAAATGTTTGGCATTTG
64 TATA-AAAACAATTGGAATTTG
* * *
867797 TTTGTAATTTATAAAAGTTTTGGTCTTTATTGTAATATATCAAAA
1 -TTGTAATTTATAAAAGTTTTGG-CTTTGTTGTAATTTATAAAAA
867842 TATTATTTTT
Statistics
Matches: 104, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
85 4 0.04
86 83 0.80
87 17 0.16
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (84 bp):
TTGTAATTTATAAAAGTTTTGGCTTTGTTGTAATTTATAAAAACAATTGGAATTTGTTGTAATTA
TAAAAACAATTGGAATTTG
Found at i:869044 original size:19 final size:20
Alignment explanation
Indices: 869013--869051 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
869003 TATGGAACTT
869013 AGAGAAGATGAGAAGGAAGA
1 AGAGAAGATGAGAAGGAAGA
*
869033 AGAGAA-ATGAGAATGAAGA
1 AGAGAAGATGAGAAGGAAGA
869052 CAGCGAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08
Consensus pattern (20 bp):
AGAGAAGATGAGAAGGAAGA
Found at i:872241 original size:21 final size:23
Alignment explanation
Indices: 872196--872250 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 23
872186 ATAAAAAAGG
872196 GTTTTGAAAAATCGTATATTATATA
1 GTTTTG-AAAATC-TATATTATATA
872221 GTTTTGAAAAT-TATA-TATATA
1 GTTTTGAAAATCTATATTATATA
872242 -TATTTGAAA
1 GT-TTTGAAA
872251 CAAGGGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.03
21 13 0.45
22 4 0.14
24 5 0.17
25 6 0.21
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (23 bp):
GTTTTGAAAATCTATATTATATA
Found at i:872243 original size:25 final size:25
Alignment explanation
Indices: 872196--872250 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
872186 ATAAAAAAGG
*
872196 GTTTTGAAAAATCGTATATTATATA
1 GTTTTGAAAAATCATATATTATATA
*
872221 GTTTTG-AAAATTATATA-TATATA
1 GTTTTGAAAAATCATATATTATATA
872244 --TTTGAAA
1 GTTTTGAAA
872251 CAAGGGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 4 0.15
22 2 0.07
23 6 0.22
24 9 0.33
25 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (25 bp):
GTTTTGAAAAATCATATATTATATA
Found at i:872259 original size:60 final size:61
Alignment explanation
Indices: 872188--872407 Score: 265
Period size: 60 Copynumber: 3.6 Consensus size: 61
872178 AAAATAATAT
* *
872188 AAAAAAGGGTTTTGAAAAATCGTATATTATATAGTTTTGAAAATTATATATATATA-TTTG
1 AAAAAAAGGTTTTGAAAAATCATATATTATATAGTTTTGAAAATTATATATATATAGTTTG
* * * *
872248 AAACAAGGGTTTTGAAAAA-CAATATATTATATAGTTTTGAAAATAATATAATATAAATAGTTTC
1 AAAAAAAGGTTTTGAAAAATC-ATATATTATATAGTTTTGAAAAT--TAT-ATATATATAGTTTG
*
872312 AAAAAAAGGTTTT-AAAAAT-ATAATATTATATAGTTTTGAAAATAATATATATATAGTTGTG
1 AAAAAAAGGTTTTGAAAAATCAT-ATATTATATAGTTTTGAAAATTATATATATATAGTT-TG
*
872373 AAAAAAAGGTTTTGAAAAAT-A-GTA-TATATAGTTTT
1 AAAAAAAGGTTTTGAAAAATCATATATTATATAGTTTT
872408 TTAAGTAATA
Statistics
Matches: 141, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
59 12 0.09
60 53 0.38
61 16 0.11
62 12 0.09
63 34 0.24
64 14 0.10
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (61 bp):
AAAAAAAGGTTTTGAAAAATCATATATTATATAGTTTTGAAAATTATATATATATAGTTTG
Found at i:872295 original size:24 final size:25
Alignment explanation
Indices: 872256--872302 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
872246 TGAAACAAGG
*
872256 GTTTTGAAAAACAATATATTATATA
1 GTTTTGAAAAACAATATAATATATA
*
872281 GTTTTG-AAAATAATATAATATA
1 GTTTTGAAAAACAATATAATATA
872303 AATAGTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (25 bp):
GTTTTGAAAAACAATATAATATATA
Found at i:872316 original size:26 final size:24
Alignment explanation
Indices: 872262--872316 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
872252 AAGGGTTTTG
* *
872262 AAAAACAATATATTATATAGTTTT
1 AAAAACAATATATTAAATAGTTTC
* *
872286 GAAAATAATATAATATAAATAGTTTC
1 AAAAACAATAT-AT-TAAATAGTTTC
872312 AAAAA
1 AAAAA
872317 AAGGTTTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 9 0.38
25 2 0.08
26 13 0.54
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (24 bp):
AAAAACAATATATTAAATAGTTTC
Found at i:872348 original size:24 final size:23
Alignment explanation
Indices: 872320--872369 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
872310 TCAAAAAAAG
872320 GTTTTAAAAAT-ATAATATTATATA
1 GTTTTAAAAATAAT-ATA-TATATA
*
872344 GTTTTGAAAATAATATATATATA
1 GTTTTAAAAATAATATATATATA
872367 GTT
1 GTT
872370 GTGAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 9 0.38
24 13 0.54
25 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (23 bp):
GTTTTAAAAATAATATATATATA
Found at i:872359 original size:22 final size:23
Alignment explanation
Indices: 872331--872376 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
872321 TTTTAAAAAT
*
872331 ATAATAT-TATATAGTTTTGAAA
1 ATAATATATATATAGTTGTGAAA
872353 ATAATATATATATAGTTGTGAAA
1 ATAATATATATATAGTTGTGAAA
872376 A
1 A
872377 AAAGGTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (23 bp):
ATAATATATATATAGTTGTGAAA
Found at i:872377 original size:24 final size:23
Alignment explanation
Indices: 872326--872377 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
872316 AAAGGTTTTA
*
872326 AAAATATAATATTATATAGTTTTG
1 AAAA-ATAATATTATATAGTTGTG
872350 -AAAATAATATATATATAGTTGTG
1 AAAAATAATAT-TATATAGTTGTG
872373 AAAAA
1 AAAAA
872378 AAGGTTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 7 0.28
23 14 0.56
24 4 0.16
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (23 bp):
AAAAATAATATTATATAGTTGTG
Found at i:873687 original size:18 final size:18
Alignment explanation
Indices: 873650--873694 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
873640 TCACAGAATG
873650 TAAGATTACCGGCAGTAA
1 TAAGATTACCGGCAGTAA
* *
873668 TAGGATTACCGGTGAG-AA
1 TAAGATTACCGG-CAGTAA
873686 TAAGATTAC
1 TAAGATTAC
873695 TGGGAACATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.24
Consensus pattern (18 bp):
TAAGATTACCGGCAGTAA
Found at i:873849 original size:11 final size:11
Alignment explanation
Indices: 873833--873858 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
873823 TAACAAGTTG
873833 AATTCTACTAT
1 AATTCTACTAT
873844 AATTCTACTAT
1 AATTCTACTAT
873855 AATT
1 AATT
873859 AATTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCTACTAT
Found at i:879584 original size:19 final size:20
Alignment explanation
Indices: 879540--879584 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
879530 TTCCATATGA
* *
879540 ATTTTTATTTTTTGTAATGC
1 ATTTTTATTTTTTGCAACGC
*
879560 ATTTTTATTTTTTGCACCGC
1 ATTTTTATTTTTTGCAACGC
879580 ATTTT
1 ATTTT
879585 CTTCATTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (20 bp):
ATTTTTATTTTTTGCAACGC
Found at i:885671 original size:23 final size:23
Alignment explanation
Indices: 885639--885699 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
885629 CTCATATAAA
*
885639 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTACAAT
* *
885662 TGCACTGAAGTGCCGCGTACAAT
1 TGCACCGAAGTGCCACGTACAAT
* *
885685 TGTACCGTAGTGCCA
1 TGCACCGAAGTGCCA
885700 TATAAGATGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTACAAT
Found at i:887250 original size:34 final size:34
Alignment explanation
Indices: 887212--887279 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
887202 TAAAACTCCT
887212 TTTACACCACTAAATTCAACTACAACCATTTTAA
1 TTTACACCACTAAATTCAACTACAACCATTTTAA
*
887246 TTTACACCACTAAATTCAACTACAACTATTTTAA
1 TTTACACCACTAAATTCAACTACAACCATTTTAA
887280 CTAACTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (34 bp):
TTTACACCACTAAATTCAACTACAACCATTTTAA
Found at i:889710 original size:9 final size:8
Alignment explanation
Indices: 889689--889734 Score: 58
Period size: 8 Copynumber: 5.5 Consensus size: 8
889679 AAGAATAAAT
889689 AAAAT-AA
1 AAAATGAA
889696 AGAAATGAGA
1 A-AAATGA-A
889706 AAAATGAA
1 AAAATGAA
889714 AGAAATGAA
1 A-AAATGAA
889723 AAAATGAA
1 AAAATGAA
889731 AAAA
1 AAAA
889735 AAAATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
7 1 0.03
8 17 0.49
9 15 0.43
10 2 0.06
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (8 bp):
AAAATGAA
Found at i:889723 original size:23 final size:23
Alignment explanation
Indices: 889680--889723 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
889670 TTTTTCTTGA
*
889680 AGAATAAATAAAATAAAGAAATG
1 AGAATAAATAAAAGAAAGAAATG
*
889703 AGAA-AAATGAAAGAAATGAAA
1 AGAATAAATAAAAGAAA-GAAA
889724 AAATGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (23 bp):
AGAATAAATAAAAGAAAGAAATG
Found at i:889725 original size:17 final size:18
Alignment explanation
Indices: 889689--889731 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
889679 AAGAATAAAT
889689 AAAAT-AAAGAAATGAGA
1 AAAATGAAAGAAATGAGA
889706 AAAATGAAAGAAATGA-A
1 AAAATGAAAGAAATGAGA
889723 AAAATGAAA
1 AAAATGAAA
889732 AAAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (18 bp):
AAAATGAAAGAAATGAGA
Found at i:889735 original size:9 final size:9
Alignment explanation
Indices: 889689--889735 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
889679 AAGAATAAAT
889689 AAAAT-AAA
1 AAAATGAAA
* *
889697 GAAATGAGA
1 AAAATGAAA
889706 AAAATGAAA
1 AAAATGAAA
*
889715 GAAATG-AA
1 AAAATGAAA
889723 AAAATGAAA
1 AAAATGAAA
889732 AAAA
1 AAAA
889736 AAATAAAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
8 11 0.35
9 20 0.65
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (9 bp):
AAAATGAAA
Done.