Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008111.1 Hibiscus syriacus cultivar Beakdansim tig00110647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1666726
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 64 characters in sequence are not A, C, G, or T
File 7 of 9
Found at i:1237909 original size:180 final size:187
Alignment explanation
Indices: 1237588--1237943 Score: 491
Period size: 187 Copynumber: 1.9 Consensus size: 187
1237578 ATATATATAT
*
1237588 ATATATATATATATATATATATATATATATATATAGTATATATATAGTTTTTATAAAATTTTGAA
1 ATATATATATATATATATATATATATAAATATATAGTATATATATAGTTTTTATAAAATTTTGAA
*
1237653 AACATATATAATATATAGTTCTATAAAATAACGTTTTGAAAACATATATATATATATAATATAGT
66 AACATATATAATATATAATTCTATAAAATAAC-TTTTGAAAACATATATATATATATAATATAGT
*
1237718 TTTTAAAAATATTTTGAAAATATATACAATATATAGTTTTTGAAAAGATTTTAAAAAC
130 TTTTAAAAATATTTTGAAAAAATATACAATATATAGTTTTTGAAAAGATTTTAAAAAC
* *
1237776 ATATATATATATATATATAGTTTTTGA-AAATATATA-TA-ATATATAGTTTTTA-AAATATTTT
1 ATATATATATATATATATA-TATAT-ATAAATATATAGTATATATATAGTTTTTATAAA-ATTTT
* *
1237837 GAAAATATATATAATATATAATT-TTTGAAAAT-A-TTTTGAAAACATATATATA-ATAT-ATA-
63 GAAAACATATATAATATATAATTCTAT-AAAATAACTTTTGAAAACATATATATATATATAATAT
* * * *
1237896 A-TTTTTGAAAATATTTTGAAAAAATATATATTATATAGTTTTTTAAAA
127 AGTTTTTAAAAATATTTTGAAAAAATATACAATATATAGTTTTTGAAAA
1237944 AAAAACTATA
Statistics
Matches: 153, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
180 42 0.27
181 1 0.01
182 3 0.02
183 4 0.03
184 19 0.12
186 6 0.04
187 45 0.29
188 21 0.14
189 11 0.07
190 1 0.01
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.45
Consensus pattern (187 bp):
ATATATATATATATATATATATATATAAATATATAGTATATATATAGTTTTTATAAAATTTTGAA
AACATATATAATATATAATTCTATAAAATAACTTTTGAAAACATATATATATATATAATATAGTT
TTTAAAAATATTTTGAAAAAATATACAATATATAGTTTTTGAAAAGATTTTAAAAAC
Found at i:1246099 original size:35 final size:35
Alignment explanation
Indices: 1246048--1246119 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
1246038 ATTTTTCTTA
*
1246048 TTTCTTTTGAACTCAATTTTCATTCATTCAGTACT
1 TTTCTTTTGAACTCAATTTTCATTCATTCAATACT
* *
1246083 TTTCTTTTGAATTCAATTTTCTTTCATTCAATACT
1 TTTCTTTTGAACTCAATTTTCATTCATTCAATACT
1246118 TT
1 TT
1246120 GTTATATCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (35 bp):
TTTCTTTTGAACTCAATTTTCATTCATTCAATACT
Found at i:1251329 original size:37 final size:37
Alignment explanation
Indices: 1251194--1251513 Score: 334
Period size: 37 Copynumber: 8.6 Consensus size: 37
1251184 ATATATATAG
* *
1251194 TATATAATATATAGTTTTTATAAA-ATTTTGAAAACA
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
*
1251230 TATATAATATATAGTTTTCTAAAATATAACGTTTTGAAAACATG
1 TATATAATATATAGTTTT-TAAAA-AT-A--TTTTG-AAA-ATA
1251274 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
* * * *
1251311 TACACAATATATAGTTTTTGAAAACATTTT-AAAA-A
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
* * * * *
1251346 CATAT-ATATATA---TAT-ATAGT-TTTTAAAAATA
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
1251377 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
* *
1251414 TATATAATATATAATTTTTGAAAATATTTTGAAAACATA
1 TATATAATATATAGTTTTTAAAAATATTTTG-AAA-ATA
* * *
1251453 TATATAATATTTAGTTTTTGAAAATATTTTGAAAAAA
1 TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
*
1251490 TATATATTATATAGTTTTTAAAAA
1 TATATAATATATAGTTTTTAAAAA
1251514 ACTATATATT
Statistics
Matches: 238, Mismatches: 28, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
29 4 0.02
30 6 0.03
31 7 0.03
32 7 0.03
34 7 0.03
35 5 0.02
36 25 0.11
37 94 0.39
38 10 0.04
39 37 0.16
40 1 0.00
41 1 0.00
42 7 0.03
43 8 0.03
44 19 0.08
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (37 bp):
TATATAATATATAGTTTTTAAAAATATTTTGAAAATA
Found at i:1251388 original size:103 final size:102
Alignment explanation
Indices: 1251252--1251479 Score: 341
Period size: 103 Copynumber: 2.2 Consensus size: 102
1251242 AGTTTTCTAA
* *
1251252 AATATA-ACGTTTTGAAAACATGTATATAATATATAGTTTTTAAAAATATTTTGAAAATATACAC
1 AATATATA-GTTTTTAAAA-ATATATATAATATATAGTTTTTAAAAATATTTTGAAAATATACAC
*
1251316 AATATATAGTTTTTGAAAACATTTTAAAAACATATATAT
64 AATATATAATTTTTGAAAACATTTTAAAAACATATATAT
* *
1251355 ATATATATAGTTTTTAAAAATATATATAATATATAGTTTTTAAAAATATTTTGAAAATATATATA
1 A-ATATATAGTTTTTAAAAATATATATAATATATAGTTTTTAAAAATATTTTGAAAATATACACA
* *
1251420 ATATATAATTTTTGAAAATATTTTGAAAACATATATAT
65 ATATATAATTTTTGAAAACATTTTAAAAACATATATAT
* *
1251458 AATATTTAGTTTTTGAAAATAT
1 AATATATAGTTTTTAAAAATAT
1251480 TTTGAAAAAA
Statistics
Matches: 114, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
102 19 0.17
103 80 0.70
104 14 0.12
105 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.43
Consensus pattern (102 bp):
AATATATAGTTTTTAAAAATATATATAATATATAGTTTTTAAAAATATTTTGAAAATATACACAA
TATATAATTTTTGAAAACATTTTAAAAACATATATAT
Found at i:1251395 original size:27 final size:27
Alignment explanation
Indices: 1251337--1251403 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
1251327 TTTGAAAACA
*
1251337 TTTTAAAAACATATATATATATATATAG
1 TTTTTAAAA-ATATATATATATATATAG
1251365 TTTTTAAAAATATATATA-ATATATAG
1 TTTTTAAAAATATATATATATATATAG
1251391 TTTTTAAAAATAT
1 TTTTTAAAAATAT
1251404 TTTGAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 21 0.55
27 9 0.24
28 8 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (27 bp):
TTTTTAAAAATATATATATATATATAG
Found at i:1251413 original size:28 final size:26
Alignment explanation
Indices: 1251337--1251417 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
1251327 TTTGAAAACA
* *
1251337 TTTTAAAAACATATATATATATATATAG
1 TTTTTAAAA-ATATATA-AAATATATAG
*
1251365 TTTTTAAAAATATATATAATATATAG
1 TTTTTAAAAATATATAAAATATATAG
*
1251391 TTTTTAAAAATATTTTGAAAATATATA
1 TTTTTAAAAATA-TAT-AAAATATATA
1251418 TAATATATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 20 0.43
27 9 0.20
28 17 0.37
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (26 bp):
TTTTTAAAAATATATAAAATATATAG
Found at i:1252764 original size:9 final size:9
Alignment explanation
Indices: 1252750--1252783 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
1252740 ATAATTGTTC
1252750 TTTTATTTT
1 TTTTATTTT
1252759 TTTTA--TT
1 TTTTATTTT
1252766 TTTTATTTT
1 TTTTATTTT
1252775 TTTTATTTT
1 TTTTATTTT
1252784 AATTTTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
9 16 0.70
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTATTTT
Found at i:1252771 original size:16 final size:16
Alignment explanation
Indices: 1252750--1252783 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1252740 ATAATTGTTC
1252750 TTTTATTTTTTTTATT
1 TTTTATTTTTTTTATT
1252766 TTTTATTTTTTTTATT
1 TTTTATTTTTTTTATT
1252782 TT
1 TT
1252784 AATTTTAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTATTTTTTTTATT
Found at i:1252788 original size:15 final size:15
Alignment explanation
Indices: 1252750--1252789 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
1252740 ATAATTGTTC
1252750 TTTTATTTTTTTTATT
1 TTTTATTTTTTTTA-T
1252766 TTTTATTTTTTTTAT
1 TTTTATTTTTTTTAT
*
1252781 TTTAATTTT
1 TTTTATTTT
1252790 AGTAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTATTTTTTTTAT
Found at i:1264656 original size:34 final size:34
Alignment explanation
Indices: 1264597--1264663 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
1264587 TTATTGAGAG
*
1264597 TTGTTTTCTCCTTTTTATCAAGAGAGAA-TTGTTA
1 TTGTTTTCTCCTTTTGATC-AGAGAGAAGTTGTTA
1264631 TTGTTTTCTCCTTGTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTT-TT-GATCAGAGAGAAGTTGT
1264664 AATTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (34 bp):
TTGTTTTCTCCTTTTGATCAGAGAGAAGTTGTTA
Found at i:1265611 original size:22 final size:23
Alignment explanation
Indices: 1265559--1265611 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
1265549 AATAACGGTC
1265559 AAACAAACAAAAACATGTCATACA
1 AAACAAA-AAAAACATGTCATACA
* *
1265583 GAA-AAAAAAAATATGTCATA-A
1 AAACAAAAAAAACATGTCATACA
1265604 AAACAAAA
1 AAACAAAA
1265612 TTATTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 17 0.68
23 3 0.12
24 2 0.08
ACGTcount: A:0.68, C:0.13, G:0.06, T:0.13
Consensus pattern (23 bp):
AAACAAAAAAAACATGTCATACA
Found at i:1273457 original size:24 final size:24
Alignment explanation
Indices: 1273393--1273460 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
1273383 AAGTCGAGGG
* *
1273393 TTCTAAGCGGTCCTTCCGGACAAA
1 TTCTAAGCGGTCCTTCGGGAAAAA
* *
1273417 TTCTACGTGGTCCTTCGGGAAAAA
1 TTCTAAGCGGTCCTTCGGGAAAAA
*
1273441 TTCTATGCGGTCCTTCGGGA
1 TTCTAAGCGGTCCTTCGGGA
1273461 TATATCTATG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (24 bp):
TTCTAAGCGGTCCTTCGGGAAAAA
Found at i:1273500 original size:24 final size:24
Alignment explanation
Indices: 1273473--1273533 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
1273463 TATCTATGTG
1273473 GCACTTCGGTGCATATTCTACATA
1 GCACTTCGGTGCATATTCTACATA
* *
1273497 GCACTTCGGTGCATATTCTACGTG
1 GCACTTCGGTGCATATTCTACATA
*
1273521 GTACTTCGGTGCA
1 GCACTTCGGTGCA
1273534 AATTATATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (24 bp):
GCACTTCGGTGCATATTCTACATA
Found at i:1276495 original size:29 final size:31
Alignment explanation
Indices: 1276463--1276535 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
1276453 TAGGTACTTG
1276463 TTTTGATAAAAAT-AT-A-TTCTAGATACATA
1 TTTTGATAAAAATGATAACTT-TAGATACATA
* * *
1276492 TTTTGATCAAAATGATAACTTTAGGTACTTA
1 TTTTGATAAAAATGATAACTTTAGATACATA
1276523 TTTTGATCAAAAA
1 TTTTGAT-AAAAA
1276536 ATACTTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 12 0.33
30 2 0.06
31 16 0.44
32 6 0.17
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (31 bp):
TTTTGATAAAAATGATAACTTTAGATACATA
Found at i:1276527 original size:31 final size:28
Alignment explanation
Indices: 1276451--1276543 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 28
1276441 AATTGATTAT
* *
1276451 TTTAGGTACTTGTTTTGATAAAAATATA
1 TTTAGGTACTTATTTTGATCAAAATATA
* *
1276479 TTCTAGATACATATTTTGATCAAAATGATAA
1 TT-TAGGTACTTATTTTGATCAAAAT-AT-A
*
1276510 CTTTAGGTACTTATTTTGATCAAAAAATA
1 -TTTAGGTACTTATTTTGATCAAAATATA
1276539 CTTTA
1 -TTTA
1276544 AAATTTAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
28 2 0.04
29 25 0.46
30 4 0.07
31 21 0.39
32 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (28 bp):
TTTAGGTACTTATTTTGATCAAAATATA
Found at i:1277370 original size:23 final size:23
Alignment explanation
Indices: 1277327--1277370 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
1277317 TAATTGAATT
*
1277327 TTAAAATATTAATGTGTTTAAGG
1 TTAAAATATTAATATGTTTAAGG
*
1277350 TTAAAAT-TTATTATGTCTTAA
1 TTAAAATATTAATATGT-TTAA
1277371 TATTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (23 bp):
TTAAAATATTAATATGTTTAAGG
Found at i:1280446 original size:26 final size:24
Alignment explanation
Indices: 1280375--1280446 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
1280365 TTATATTTTT
1280375 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
1280400 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
1280422 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
1280447 GTTGGATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:1282560 original size:16 final size:16
Alignment explanation
Indices: 1282539--1282571 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1282529 TTACTTTTAA
1282539 ATTTATTT-TAAATATT
1 ATTTATTTAT-AATATT
1282555 ATTTATTTATAATATT
1 ATTTATTTATAATATT
1282571 A
1 A
1282572 ATTTGTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTATTTATAATATT
Found at i:1282599 original size:17 final size:17
Alignment explanation
Indices: 1282577--1282610 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
1282567 TATTAATTTG
1282577 TTATTACTTTT-ATATTA
1 TTATTA-TTTTCATATTA
1282594 TTATTATTTTCATATTA
1 TTATTATTTTCATATTA
1282611 ATCACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTTTCATATTA
Found at i:1282623 original size:2 final size:2
Alignment explanation
Indices: 1282616--1282657 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
1282606 TATTAATCAC
*
1282616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1282658 TTTAAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1282763 original size:18 final size:19
Alignment explanation
Indices: 1282740--1282775 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1282730 CTGGTATTTT
1282740 AAAA-TTAAATATTATAAA
1 AAAATTTAAATATTATAAA
*
1282758 AAAATTTAATTATTATAA
1 AAAATTTAAATATTATAA
1282776 TATATATCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTTAAATATTATAAA
Found at i:1282891 original size:26 final size:27
Alignment explanation
Indices: 1282838--1282891 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
1282828 ATATTTTTAA
1282838 ATAAATAAATATTTTATTTATAAATAT
1 ATAAATAAATATTTTATTTATAAATAT
* *
1282865 ATAAATTAATATTTT-TTTATAATTAT
1 ATAAATAAATATTTTATTTATAAATAT
1282891 A
1 A
1282892 ATTTCGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
ATAAATAAATATTTTATTTATAAATAT
Found at i:1283397 original size:23 final size:23
Alignment explanation
Indices: 1283369--1283416 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
1283359 TTCAAATTCT
1283369 TTATTACTTATTATTTT-TATATA
1 TTATTACTTATTATTTTAT-TATA
* *
1283392 TTATTATTTTTTATTTTATTATA
1 TTATTACTTATTATTTTATTATA
1283415 TT
1 TT
1283417 CAAGAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (23 bp):
TTATTACTTATTATTTTATTATA
Found at i:1290229 original size:114 final size:114
Alignment explanation
Indices: 1290029--1290248 Score: 350
Period size: 114 Copynumber: 1.9 Consensus size: 114
1290019 CACGTTCTCG
* * *
1290029 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGATTT
1 TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGATTC
* * *
1290094 GGTATGAACCCCAAAATCAATCATTGGATTTGAAAGATGAATTCGCTCA
66 GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTCGCTCA
* * *
1290143 TAGTAGAAATAAGGAAACCCAATAGCATTTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTC
1 TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGATTC
*
1290208 GGTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAA
1290249 CTGCATGATC
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 96 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30
Consensus pattern (114 bp):
TAGTAGAAATAAGGAAACCCAATAGCATCTTCTGGAAGTATTCTTTAAGTTATCTGATCTGATTC
GGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTCGCTCA
Found at i:1292792 original size:22 final size:22
Alignment explanation
Indices: 1292764--1292886 Score: 210
Period size: 22 Copynumber: 5.6 Consensus size: 22
1292754 ACATCTACAT
1292764 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
1292786 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
1292808 TTTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
1292830 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* *
1292852 TTTTTAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
1292874 TTTTCAAAGATGA
1 TCTTCAAAGATGA
1292887 AAGCTTTATT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 96 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:1293600 original size:113 final size:113
Alignment explanation
Indices: 1293289--1293984 Score: 654
Period size: 123 Copynumber: 5.9 Consensus size: 113
1293279 GATTCAAATC
* * *
1293289 CATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAAAACTCATCTGAAGAAGGA
1 CATCACTAGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
** *
1293354 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTCAAATC
66 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
* * * *
1293402 CATCACTCGATGGATAAACATTTCCAGA-AGAGTTCATAATAAGAAGAACTCATCTGAAGAAGGA
1 CATCACTAGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
1293466 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
* * * *
1293514 CATCACTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAATG
1 CATCACTAGATGGATCAACATTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * *
1293578 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTTCATG-ATT
65 AAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
* *
1293626 CTATCACAGAAAGAGATAGATCAACATTAATTTGTCCAGAGAAAGTTCATAATGAGAAGAACTCA
1 C-ATCAC-----TAGATGGATCAAC----A-TT-TCCAGAGAAAGTTCATAATGAGAAGAACTCA
* *
1293691 TCTTG-AG-AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATG-ACT
54 TC-TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
* * * *
1293749 CTATCACAGAAGGAGATAGATCAATATCAATTTTTCTAGAGAAAGTTCATAATGAGAAGAACTTA
1 C-ATCAC-----TAGATGGATC-A-A-C-A--TTTCCAGAGAAAGTTCATAATGAGAAGAACTCA
* *
1293814 TCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTTTGACTT
54 TCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
* * *
1293874 TATCA-TAGAAGGAGATAGATCACCATCAACATTTCCAGA-AATGTTCATAATGAGAAGAACTCA
1 CATCACT------AGAT-G-----GATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCA
* * **
1293937 TCAGAAGAAGG-AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTT
54 TCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTT
1293985 GCCTTAATTT
Statistics
Matches: 500, Mismatches: 48, Indels: 61
0.82 0.08 0.10
Matches are distributed among these distances:
112 104 0.21
113 104 0.21
118 10 0.02
122 37 0.07
123 136 0.27
124 96 0.19
125 5 0.01
126 2 0.00
127 1 0.00
128 1 0.00
129 1 0.00
130 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (113 bp):
CATCACTAGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTTGAATT
Found at i:1294245 original size:39 final size:39
Alignment explanation
Indices: 1294165--1294306 Score: 196
Period size: 39 Copynumber: 3.6 Consensus size: 39
1294155 ATCCCTAGTG
* *
1294165 GAAG-AGTTCATAATGAGAATAACTCATCTGAAGAAGGAA
1 GAAGAAGTTCATAATGAGAAGAACTCATCTAAAGAA-GAA
* *
1294204 GAAGAAATTCATAATGAGAAGAACTCATCTAAAGAATAA
1 GAAGAAGTTCATAATGAGAAGAACTCATCTAAAGAAGAA
* ** *
1294243 GAATAAGTTCATAATGAGAAGAACTCATCTTGAGAGGAA
1 GAAGAAGTTCATAATGAGAAGAACTCATCTAAAGAAGAA
1294282 GAAGAAGTTCATAATGAGAAGAACT
1 GAAGAAGTTCATAATGAGAAGAACT
1294307 TGTTCGACCT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
39 63 0.69
40 28 0.31
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (39 bp):
GAAGAAGTTCATAATGAGAAGAACTCATCTAAAGAAGAA
Found at i:1296478 original size:2 final size:2
Alignment explanation
Indices: 1296471--1296513 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
1296461 TAATAATAAA
* *
1296471 AT AT AT AT AT AT TT AT AT AT -T AT AG AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1296512 AT
1 AT
1296514 TTTAAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1296481 original size:27 final size:27
Alignment explanation
Indices: 1296451--1296509 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
1296441 TTATTATTTT
1296451 TATATTCACATAATAATA-AAATATATA
1 TATATTCACAT-ATAATAGAAATATATA
* * * *
1296478 TATATTTATATATTATAGATATATATA
1 TATATTCACATATAATAGAAATATATA
1296505 TATAT
1 TATAT
1296510 ATATTTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (27 bp):
TATATTCACATATAATAGAAATATATA
Found at i:1296723 original size:21 final size:21
Alignment explanation
Indices: 1296675--1296716 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1296665 AGTCCTTTTG
*
1296675 ATATATTTTAAATAAATAAAT
1 ATATATTATAAATAAATAAAT
* *
1296696 ATTTATTATAAATATATAAAT
1 ATATATTATAAATAAATAAAT
1296717 TAATATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATATTATAAATAAATAAAT
Found at i:1298467 original size:80 final size:80
Alignment explanation
Indices: 1298334--1298495 Score: 324
Period size: 80 Copynumber: 2.0 Consensus size: 80
1298324 TCCGTTTTGG
1298334 GAGGTGGCCGTGGCATCTATTCGAAGAGTAGGAGATCCCTTGATTTGGAGTCCCAATTCTATGTT
1 GAGGTGGCCGTGGCATCTATTCGAAGAGTAGGAGATCCCTTGATTTGGAGTCCCAATTCTATGTT
1298399 TGTCAGAAATGCAGC
66 TGTCAGAAATGCAGC
1298414 GAGGTGGCCGTGGCATCTATTCGAAGAGTAGGAGATCCCTTGATTTGGAGTCCCAATTCTATGTT
1 GAGGTGGCCGTGGCATCTATTCGAAGAGTAGGAGATCCCTTGATTTGGAGTCCCAATTCTATGTT
1298479 TGTCAGAAATGCAGC
66 TGTCAGAAATGCAGC
1298494 GA
1 GA
1298496 AAGTTTTGAA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (80 bp):
GAGGTGGCCGTGGCATCTATTCGAAGAGTAGGAGATCCCTTGATTTGGAGTCCCAATTCTATGTT
TGTCAGAAATGCAGC
Found at i:1300212 original size:2 final size:2
Alignment explanation
Indices: 1300205--1300238 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1300195 AAATGTTTTA
1300205 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1300239 TAAGAATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1306877 original size:20 final size:19
Alignment explanation
Indices: 1306829--1306878 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
1306819 ATAATCACCA
1306829 TATATTAA-TAA-AAAAAT
1 TATATTAATTAATAAAAAT
*
1306846 TAT-TGAATTTAATGAAAAAT
1 TATATTAA-TTAAT-AAAAAT
1306866 TATATTAATTAAT
1 TATATTAATTAAT
1306879 TTAATTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 3 0.12
17 3 0.12
18 3 0.12
20 14 0.54
21 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
TATATTAATTAATAAAAAT
Found at i:1306913 original size:18 final size:20
Alignment explanation
Indices: 1306867--1306920 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 20
1306857 ATGAAAAATT
1306867 ATATTAATTAATTTAATTCAG
1 ATATTAATTAATTTAA-TCAG
*
1306888 ATTGTTAATTAATTTAA-CAG
1 A-TATTAATTAATTTAATCAG
*
1306908 A-ATTAATTTATTT
1 ATATTAATTAATTT
1306921 GGGTTTGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 10 0.34
20 4 0.14
21 1 0.03
22 14 0.48
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (20 bp):
ATATTAATTAATTTAATCAG
Found at i:1308348 original size:9 final size:8
Alignment explanation
Indices: 1308333--1308432 Score: 64
Period size: 9 Copynumber: 12.0 Consensus size: 8
1308323 TACATTTGGT
1308333 TTTTATTA
1 TTTTATTA
1308341 TATTTATTA
1 T-TTTATTA
1308350 -TTT-TTA
1 TTTTATTA
1308356 -TTT-TTA
1 TTTTATTA
1308362 TTTTTATTA
1 -TTTTATTA
*
1308371 CTATTATTA
1 -TTTTATTA
*
1308380 TTATTATTT
1 TT-TTATTA
1308389 TTATTATTAA
1 TT-TTATT-A
*
1308399 TATTATTA
1 TTTTATTA
1308407 TTATTATTAA
1 TT-TTATT-A
*
1308417 TATTATTA
1 TTTTATTA
1308425 TTTTATTA
1 TTTTATTA
1308433 CAGATACAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
6 9 0.12
7 3 0.04
8 15 0.20
9 45 0.60
10 3 0.04
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTATTA
Found at i:1308402 original size:6 final size:6
Alignment explanation
Indices: 1308335--1308432 Score: 110
Period size: 6 Copynumber: 16.5 Consensus size: 6
1308325 CATTTGGTTT
* * * *
1308335 TTATTA -TATTTA TTATTT TTATTT TTATTT TTATTA CTATTA TTATTA
1 TTATTA TTA-TTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA
* * *
1308383 TTATTT TTATTA TTAATA TTATTA TTATTA TTAATA TTATTA TT-TTA
1 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA
1308430 TTA
1 TTA
1308433 CAGATACAAC
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
5 7 0.09
6 70 0.89
7 2 0.03
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATTA
Found at i:1310198 original size:15 final size:16
Alignment explanation
Indices: 1310158--1310198 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
1310148 TTCTTAAGAT
*
1310158 TATTTGAAATAACATA
1 TATTTGAATTAACATA
1310174 -ATTATGAATTAA-ATA
1 TATT-TGAATTAACATA
1310189 TATTTGAATT
1 TATTTGAATT
1310199 CTTAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (16 bp):
TATTTGAATTAACATA
Found at i:1312333 original size:14 final size:14
Alignment explanation
Indices: 1312295--1312348 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
1312285 ATTTTAAATA
*
1312295 ATTTACATTTACAT
1 ATTTACATTTGCAT
*
1312309 TTTTACATTTGCAT
1 ATTTACATTTGCAT
1312323 ATTTACATTTGGCAT
1 ATTTACATTT-GCAT
* *
1312338 CTTTGCATTTG
1 ATTTACATTTG
1312349 TATTTTTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (14 bp):
ATTTACATTTGCAT
Found at i:1315379 original size:23 final size:23
Alignment explanation
Indices: 1315349--1315396 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
1315339 ACCACTGAAA
1315349 CTTACAAGGATTAGCACGAGAAG
1 CTTACAAGGATTAGCACGAGAAG
1315372 CTTACAAGGATTAGCACGAGAAG
1 CTTACAAGGATTAGCACGAGAAG
1315395 CT
1 CT
1315397 ACCTTTTGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (23 bp):
CTTACAAGGATTAGCACGAGAAG
Found at i:1315959 original size:13 final size:13
Alignment explanation
Indices: 1315925--1315973 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
1315915 TCATCCAGCA
1315925 AAGAAAGAAAAAA-
1 AAGAAA-AAAAAAG
*
1315938 AA-AAGAAAAAAG
1 AAGAAAAAAAAAG
*
1315950 ATGAAAAAAAAAG
1 AAGAAAAAAAAAG
1315963 AAGAAAAAAAA
1 AAGAAAAAAAA
1315974 GGAAAATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 6 0.20
12 3 0.10
13 21 0.70
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (13 bp):
AAGAAAAAAAAAG
Found at i:1315961 original size:25 final size:25
Alignment explanation
Indices: 1315927--1315974 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
1315917 ATCCAGCAAA
*
1315927 GAAAGAAAAAA-AAAAGAAAAAAGAT
1 GAAA-AAAAAAGAAAAAAAAAAAGAT
*
1315952 GAAAAAAAAAGAAGAAAAAAAAG
1 GAAAAAAAAAGAAAAAAAAAAAG
1315975 GAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (25 bp):
GAAAAAAAAAGAAAAAAAAAAAGAT
Found at i:1315978 original size:23 final size:22
Alignment explanation
Indices: 1315932--1315979 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
1315922 GCAAAGAAAG
* *
1315932 AAAAAAAAAAGAAAAAAGATGA
1 AAAAAAAAAAGAAAAAAAAGGA
1315954 AAAAAAAAGAAGAAAAAAAAGGA
1 AAAAAAAA-AAGAAAAAAAAGGA
1315977 AAA
1 AAA
1315980 TTAAATCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAGAAAAAAAAGGA
Found at i:1318316 original size:114 final size:114
Alignment explanation
Indices: 1318116--1318328 Score: 345
Period size: 114 Copynumber: 1.9 Consensus size: 114
1318106 GTTCTCGTAA
* * *
1318116 TAGAAATAAGGAGCCCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGT
1 TAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTCGGT
* * *
1318181 ATGAACCCTAAAACCAATCATTGGATTTAAAAGACGAATTTGCTCATAG
66 AGGAACCCCAAAACCAATCATTGGAATTAAAAGACGAATTTGCTCATAG
*
1318230 TAGAAATAAGGAGACCCAATAGCATCTTTTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTCGGT
1 TAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTCGGT
* *
1318295 AGGAACCCCAGAACCAATCATTGGAATTGAAAGA
66 AGGAACCCCAAAACCAATCATTGGAATTAAAAGA
1318329 TGAACTCCAT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 90 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (114 bp):
TAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTCGGT
AGGAACCCCAAAACCAATCATTGGAATTAAAAGACGAATTTGCTCATAG
Found at i:1320450 original size:40 final size:40
Alignment explanation
Indices: 1320395--1320474 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
1320385 TGAGCAGAAG
*
1320395 CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
1 CCACAGAAAAGGATGAATGTGTTGTCAAGTATTTTACATC
1320435 CCACAGAAAAGGATGAATGTGTTGTCAAGTATTTTACATC
1 CCACAGAAAAGGATGAATGTGTTGTCAAGTATTTTACATC
1320475 TGAGCTGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (40 bp):
CCACAGAAAAGGATGAATGTGTTGTCAAGTATTTTACATC
Found at i:1320907 original size:22 final size:22
Alignment explanation
Indices: 1320881--1320957 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
1320871 ATCTACACTC
1320881 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* * *
1320903 TTCAAAGAGGATATATTCCCTT
1 TTCAAAGATGATAGATTCTCTT
* *
1320925 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1320947 TTCAAAGATGA
1 TTCAAAGATGA
1320958 AAGCTTTATC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1321562 original size:112 final size:111
Alignment explanation
Indices: 1321393--1322706 Score: 1826
Period size: 112 Copynumber: 11.7 Consensus size: 111
1321383 TTTTCCAGAG
* *
1321393 AGAGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* *
1321458 TCAACCTTTTGTTTGAATTCATCATTTGATGGATCAGCAT-CAGTGAA
66 TCAA-CTTTTGCTTGAATTCATCATTTGATGGATCAGCATCCAG-GAT
1321505 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* *
1321570 TCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATTGTCAGG-T
66 TCAACTTTT-GCTTGAATTCATCATTTGATGGATCAGCA-T-CCAGGAT
* *
1321618 CGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
*
1321683 TCAACTTTTCGCTTGAATTCATCATTTGATGGATCAACATTGCCAGG-T
66 TCAACTTTT-GCTTGAATTCATCATTTGATGGATCAGCA-T-CCAGGAT
* * *
1321731 CGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* *
1321796 TCAACTTTTCGCTTGAATTCATCATTTGATAGATCAGCAT-CAGTGAA
66 TCAACTTTT-GCTTGAATTCATCATTTGATGGATCAGCATCCAG-GAT
* * *
1321843 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * *
1321908 TCAACTTTCGCTTGAATTCATCACTTGATGGATCAGCTTTTCCAGAGAT
66 TCAACTTTTGCTTGAATTCATCATTTGATGGATCAGC--ATCCAG-GAT
* *
1321957 --AGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * *
1322020 TCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACAT-CAGTGAA
66 TCAA-CTTTTGCTTGAATTCATCATTTGATGGATCAGCATCCAG-GAT
1322067 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* *
1322132 TCAACTTTTCGCTTGAATTCATCATTCGATAGATCAGCATTGCCAGG-T
66 TCAACTTTT-GCTTGAATTCATCATTTGATGGATCAGCA-T-CCAGGAT
* * *
1322180 CGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
*
1322245 TCAACTTTTCGCTTGAATTCATCATTTGATGGATCAGCAT-CAGTGAA
66 TCAACTTTT-GCTTGAATTCATCATTTGATGGATCAGCATCCAG-GAT
1322292 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * *
1322357 TCAACTTTTTTCTTGAATTCATCACTTGATGGATCAACATTTCCAGG-T
66 TCAAC-TTTTGCTTGAATTCATCATTTGATGGATCAGCA--TCCAGGAT
* ** *
1322405 AGAGTTCATAATGAGAAGAACTCATCTGAA-AAGGAAGAAGAAATTCATAATTTGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * *
1322469 TCAACCTTTTGCCTGAATTCATCACTTGATGGATCAACATTTCCAGG-T
66 TCAA-CTTTTGCTTGAATTCATCATTTGATGGATCAGCA--TCCAGGAT
*
1322517 AGAGTTCATAATGAGAATAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * * * * *
1322582 TCAACTTTTTGCTCGAATTCATCACTCGATGGATCAACTTTTCCA-GAG
66 TCAAC-TTTTGCTTGAATTCATCATTTGATGGATCAGC--ATCCAGGAT
*
1322630 AGAGTTCATAATGAGAAGAACTCATCTGAATAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1322695 TCAATCTTTTGC
66 TCAA-CTTTTGC
1322707 ATGATTCTAT
Statistics
Matches: 1099, Mismatches: 74, Indels: 57
0.89 0.06 0.05
Matches are distributed among these distances:
110 11 0.01
111 39 0.04
112 517 0.47
113 513 0.47
114 10 0.01
115 9 0.01
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (111 bp):
AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
TCAACTTTTGCTTGAATTCATCATTTGATGGATCAGCATCCAGGAT
Found at i:1321850 original size:225 final size:227
Alignment explanation
Indices: 1321393--1322704 Score: 1964
Period size: 225 Copynumber: 5.8 Consensus size: 227
1321383 TTTTCCAGAG
* *
1321393 AGAGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * * * *
1321458 TCAACCTTTT-GTTTGAATTCATCATTTGATGGATCAGCA--T-CAGTGAAAGAGTTCATAATGA
66 TCAA-CTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAG-TAGAGTTCATAATGA
*
1321519 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCT
129 GAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCT
* *
1321583 TGAATTCATCATTCGATGGATCAGCATTGTCAG-G-T
194 TGAATTCATCATTTGATGGATCAGCA---TCAGTGAA
* *
1321618 CGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * *
1321683 TCAACTTTTCGCTTGAATTCATCATTTGATGGATCAACATTGCCAG-GTCGAGTTCATAATGAGA
66 TCAACTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAGTAGAGTTCATAATGAGA
*
1321747 AGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTCGCTTG
131 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCTTG
*
1321811 AATTCATCATTTGATAGATCAGCATCAGTGAA
196 AATTCATCATTTGATGGATCAGCATCAGTGAA
* * *
1321843 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * * *
1321908 TCAAC-TTTCGCTTGAATTCATCACTTGATGGATCAGCTTTTCCAGAG-ATAGTTTATAATGAGA
66 TCAACTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAGTAGAGTTCATAATGAGA
*
1321971 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT-GTTTG
131 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCTTG
*
1322035 AATTCATCATTTGATGGATCAACATCAGTGAA
196 AATTCATCATTTGATGGATCAGCATCAGTGAA
1322067 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * * *
1322132 TCAACTTTTCGCTTGAATTCATCA-TTCGATAGATCAGCATTGCCAG-GTCGAGTTCATAATGAG
66 TCAACTTTTCGCTTGAATTCATCACTT-GATGGATCAACATTTCCAGAGTAGAGTTCATAATGAG
*
1322195 AAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTCGCTT
130 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCTT
1322259 GAATTCATCATTTGATGGATCAGCATCAGTGAA
195 GAATTCATCATTTGATGGATCAGCATCAGTGAA
1322292 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
**
1322357 TCAACTTTTTTCTTGAATTCATCACTTGATGGATCAACATTTCCAG-GTAGAGTTCATAATGAGA
66 TCAACTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAGTAGAGTTCATAATGAGA
* ** *
1322421 AGAACTCATCTGAA-AAGGAAGAAGAAATTCATAATTTGAAGAATTTGTTCAACCTTTT-GCCTG
131 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCTTG
* * *
1322484 AATTCATCACTTGATGGATCAACATTTCCAG-G-T
196 AATTCATCATTTGATGGATCAGCA--T-CAGTGAA
*
1322517 AGAGTTCATAATGAGAATAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* * * *
1322582 TCAACTTTTTGCTCGAATTCATCACTCGATGGATCAACTTTTCCAGAG-AGAGTTCATAATGAGA
66 TCAACTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAGTAGAGTTCATAATGAGA
* * *
1322646 AGAACTCATCTGAATAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTT
131 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
1322705 GCATGATTCT
Statistics
Matches: 1002, Mismatches: 66, Indels: 37
0.91 0.06 0.03
Matches are distributed among these distances:
223 4 0.00
224 276 0.28
225 572 0.57
226 143 0.14
227 4 0.00
228 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (227 bp):
AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
TCAACTTTTCGCTTGAATTCATCACTTGATGGATCAACATTTCCAGAGTAGAGTTCATAATGAGA
AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTCGCTTG
AATTCATCATTTGATGGATCAGCATCAGTGAA
Found at i:1322427 original size:562 final size:561
Alignment explanation
Indices: 1321364--1322704 Score: 2185
Period size: 562 Copynumber: 2.4 Consensus size: 561
1321354 GATTCAAATA
*
1321364 CATCACTTGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATATGAAGAAGGA
1 CATCACTTGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1321429 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCA
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCA
*
1321494 GCATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
131 ACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
* *
1321559 GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAGCATTGTCAGGTCGAGTT
196 GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATAGATCAGCATTGCCAGGTCGAGTT
*
1321624 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAATAACTTGTTCAACT
261 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACT
**
1321689 TTTCGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTCGAGTTCATAATGAGAAGAACTC
326 TTTCGCTTGAATTCATCATTTGATGGATCAACATT-CCAGGAAGAGTTCATAATGAGAAGAACTC
*
1321754 ATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTCGCTTGAATTCATC
390 ATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATC
* * *
1321819 ATTTGATAGATCAGCATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAAG
455 ACTTGATAGATCAACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAA-AAGGAAGAAG
*
1321884 AAATTCATAATGAGAAGAATTTGTTCAA-CTTTCGCTTGAATT
519 AAATTCATAATGAGAAGAATTTGTTCAACCTTTCGCCTGAATT
* * *
1321926 CATCACTTGATGGATCAGCTTTTCCAGAGATAGTTTATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCACTTGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1321991 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCA
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCA
1322056 ACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
131 ACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
1322121 GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATAGATCAGCATTGCCAGGTCGAGTT
196 GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATAGATCAGCATTGCCAGGTCGAGTT
* *
1322186 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGTTCAACT
261 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACT
*
1322251 TTTCGCTTGAATTCATCATTTGATGGATCAGCA-T-CAGTGAAAGAGTTCATAATGAGAAGAACT
326 TTTCGCTTGAATTCATCATTTGATGGATCAACATTCCAG-G-AAGAGTTCATAATGAGAAGAACT
* **
1322314 CATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTTCTTGAATTCAT
389 CATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCAT
* *
1322379 CACTTGATGGATCAACATTTCCAG-G-TAGAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAG
454 CACTTGATAGATCAACA--T-CAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAG
** *
1322442 AAGAAATTCATAATTTGAAGAATTTGTTCAACCTTTTGCCTGAATT
516 AAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTCGCCTGAATT
* *
1322488 CATCACTTGATGGATCAACATTTCCAG-GTAGAGTTCATAATGAGAATAACTCATCTGAAGAAGG
1 CATCACTTGATGGATCAACTTTTCCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * * * *
1322552 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTCGATGGATC
65 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATC
* * *
1322617 AACTTTTCCA--GAGAGAGTTCATAATGAGAAGAACTCATCTGAATAAGGAAGAAGAAGTTCATA
130 AAC--AT-CAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
1322680 ATGAGAAGAACTTGTTCAATCTTTT
192 ATGAGAAGAACTTGTTCAA-CTTTT
1322705 GCATGATTCT
Statistics
Matches: 728, Mismatches: 40, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
559 3 0.00
560 1 0.00
561 133 0.18
562 508 0.70
563 72 0.10
564 9 0.01
565 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (561 bp):
CATCACTTGATGGATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCA
ACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATAGATCAGCATTGCCAGGTCGAGTT
CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACT
TTTCGCTTGAATTCATCATTTGATGGATCAACATTCCAGGAAGAGTTCATAATGAGAAGAACTCA
TCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCA
CTTGATAGATCAACATCAGTGAAAGAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAGAAGAA
ATTCATAATGAGAAGAATTTGTTCAACCTTTCGCCTGAATT
Found at i:1323060 original size:3 final size:3
Alignment explanation
Indices: 1323045--1323142 Score: 146
Period size: 3 Copynumber: 33.0 Consensus size: 3
1323035 CATTTGGTTT
* * *
1323045 TTA TTA -TA TTTA TTA TTT TTA TTT TTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1323090 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1323137 TTA TTA
1 TTA TTA
1323143 CAGATACAAC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
2 4 0.05
3 80 0.93
4 2 0.02
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1324917 original size:15 final size:16
Alignment explanation
Indices: 1324877--1324917 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
1324867 TTCTTAAGAT
*
1324877 TATTTGAAATAACATA
1 TATTTGAATTAACATA
1324893 -ATTATGAATTAA-ATA
1 TATT-TGAATTAACATA
1324908 TATTTGAATT
1 TATTTGAATT
1324918 CTTAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (16 bp):
TATTTGAATTAACATA
Found at i:1329951 original size:23 final size:23
Alignment explanation
Indices: 1329920--1329984 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
1329910 GTCAAAACAG
*
1329920 AATTAAAAAATAATATTAAGTAT
1 AATTTAAAAATAATATTAAGTAT
1329943 AATTTAAAAA-AATAATTAA--AT
1 AATTTAAAAATAAT-ATTAAGTAT
*
1329964 AA-TTAAAATGTAA-ATTAAGTA
1 AATTTAAAA-ATAATATTAAGTA
1329985 ATAGATGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
20 11 0.31
21 4 0.11
22 6 0.17
23 14 0.40
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
AATTTAAAAATAATATTAAGTAT
Found at i:1332191 original size:45 final size:45
Alignment explanation
Indices: 1332121--1332218 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
1332111 ATTCCAACAG
1332121 CTCCACGTTACAAATTCCAACAGCTTCCAGA-ACTGCCAGCAGCCC
1 CTCCACGTTACAAATTCCAACAGCTTCCA-ACACTGCCAGCAGCCC
* * ** *
1332166 CTCCAGGTTGCAAATTCCAGTAGCTTCCAACACTGCCAGCAGTCC
1 CTCCACGTTACAAATTCCAACAGCTTCCAACACTGCCAGCAGCCC
1332211 CTCCACGT
1 CTCCACGT
1332219 CCCCGTTCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 45 0.98
ACGTcount: A:0.26, C:0.39, G:0.15, T:0.20
Consensus pattern (45 bp):
CTCCACGTTACAAATTCCAACAGCTTCCAACACTGCCAGCAGCCC
Found at i:1335739 original size:21 final size:22
Alignment explanation
Indices: 1335703--1335748 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
1335693 CATTCTTATT
*
1335703 TTTGCATTTCTACATCTTTGCA
1 TTTGCATTTCTACATCTTTACA
*
1335725 TTTGCATTTC-GCATCTTTACA
1 TTTGCATTTCTACATCTTTACA
1335746 TTT
1 TTT
1335749 TTACATTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.17, C:0.22, G:0.09, T:0.52
Consensus pattern (22 bp):
TTTGCATTTCTACATCTTTACA
Found at i:1335777 original size:20 final size:20
Alignment explanation
Indices: 1335740--1335782 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
1335730 ATTTCGCATC
* *
1335740 TTTACATTTTTACATTTGTA
1 TTTACATTTTAACATTTGCA
**
1335760 TTTACATTTTAATTTTTGCA
1 TTTACATTTTAACATTTGCA
1335780 TTT
1 TTT
1335783 GCATCTTTGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTACATTTTAACATTTGCA
Found at i:1338578 original size:11 final size:11
Alignment explanation
Indices: 1338562--1338586 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1338552 TCCTTTAAAT
1338562 TTTAATTATTA
1 TTTAATTATTA
1338573 TTTAATTATTA
1 TTTAATTATTA
1338584 TTT
1 TTT
1338587 TATTTTAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTAATTATTA
Found at i:1338760 original size:15 final size:15
Alignment explanation
Indices: 1338732--1338773 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
1338722 TTGATTATAA
* *
1338732 AAATTATATATATTT
1 AAATTATTTTTATTT
*
1338747 AATTTATTTTTATTT
1 AAATTATTTTTATTT
1338762 AAATTATTTTTA
1 AAATTATTTTTA
1338774 GGAAAAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
AAATTATTTTTATTT
Found at i:1339134 original size:20 final size:20
Alignment explanation
Indices: 1339109--1339160 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
1339099 ACGCGATATC
*
1339109 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGGTAAAAAG
*
1339129 AAAATCGCAACGGTCAAAAG
1 AAAATCGCAACGGTAAAAAG
1339149 AAAATCGCAACG
1 AAAATCGCAACG
1339161 CGAGCTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.52, C:0.19, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGGTAAAAAG
Found at i:1339230 original size:43 final size:43
Alignment explanation
Indices: 1339174--1339316 Score: 202
Period size: 43 Copynumber: 3.4 Consensus size: 43
1339164 GCTTCCAAGT
*
1339174 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGATAGAA
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGAGAGAA
* * * * *
1339217 TCGCAATGCGATTT---ATATAATCGCAATGCGATCGAGAGAG
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGAGAGAA
1339257 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGAGAGAA
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGAGAGAA
*
1339300 TCGCAACGCAATTTAGA
1 TCGCAACGCGATTTAGA
1339317 GAATCGCAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
40 34 0.40
43 51 0.60
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (43 bp):
TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGAGAGAA
Found at i:1339326 original size:20 final size:20
Alignment explanation
Indices: 1339174--1339327 Score: 137
Period size: 20 Copynumber: 7.4 Consensus size: 20
1339164 GCTTCCAAGT
1339174 TCGCAACGCGATTTAGAAGAAAA
1 TCGCAACGCGATTTAG-AG--AA
* * *
1339197 TCGCAATGCGATTGATAGAA
1 TCGCAACGCGATTTAGAGAA
* * *
1339217 TCGCAATGCGATTTATATAA
1 TCGCAACGCGATTTAGAGAA
* ** *
1339237 TCGCAATGCGATCGAGAGAG
1 TCGCAACGCGATTTAGAGAA
1339257 TCGCAACGCGATTTAGAAGAAAA
1 TCGCAACGCGATTTAG-AG--AA
* *
1339280 TCGCAATGCGATTGAGAGAA
1 TCGCAACGCGATTTAGAGAA
*
1339300 TCGCAACGCAATTTAGAGAA
1 TCGCAACGCGATTTAGAGAA
1339320 TCGCAACG
1 TCGCAACG
1339328 AAAAAGATAG
Statistics
Matches: 109, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
20 75 0.69
21 2 0.02
22 4 0.04
23 28 0.26
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGATTTAGAGAA
Found at i:1339423 original size:6 final size:6
Alignment explanation
Indices: 1339412--1339479 Score: 129
Period size: 6 Copynumber: 11.5 Consensus size: 6
1339402 GACACGTATT
1339412 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1339460 ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACC
1339480 CGAGACGAGA
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.08
6 57 0.92
ACGTcount: A:0.32, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:1340187 original size:6 final size:6
Alignment explanation
Indices: 1340177--1340215 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
1340167 TCTCGTCTCG
*
1340177 GGTCGG GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1340216 AATACGTGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.15, G:0.54, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:1340327 original size:20 final size:20
Alignment explanation
Indices: 1340302--1340412 Score: 123
Period size: 20 Copynumber: 5.4 Consensus size: 20
1340292 ATCTTTTTCG
*
1340302 TTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCA
* *
1340322 TTGCGATTTTCTTCTAAATCGCG
1 TTGCGA--TTC-TCTCAATCGCA
*
1340345 TTGCGACTCTCTCAATCGCA
1 TTGCGATTCTCTCAATCGCA
* * *
1340365 TTGCGATTATATAAATCGCA
1 TTGCGATTCTCTCAATCGCA
*
1340385 TTGCGATTCTATCAATCGCA
1 TTGCGATTCTCTCAATCGCA
1340405 TTGCGATT
1 TTGCGATT
1340413 TTCTTCTAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
20 57 0.75
21 2 0.03
22 3 0.04
23 14 0.18
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGCGATTCTCTCAATCGCA
Found at i:1340348 original size:43 final size:43
Alignment explanation
Indices: 1340300--1340433 Score: 193
Period size: 43 Copynumber: 3.2 Consensus size: 43
1340290 CTATCTTTTT
*
1340300 CGTTGCGATTCTCTCAGTCGCATTGCGATTTTCTTCTAAATCG
1 CGTTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAAATCG
* * *
1340343 CGTTGCGACTCTCTCAATCGCATTGCGA--TT-ATATAAATCG
1 CGTTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAAATCG
* *
1340383 CATTGCGATTCTATCAATCGCATTGCGATTTTCTTCTAAATCG
1 CGTTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAAATCG
1340426 CGTTGCGA
1 CGTTGCGA
1340434 ACTTGGAAGC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 33 0.42
41 2 0.03
42 2 0.03
43 41 0.53
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (43 bp):
CGTTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAAATCG
Found at i:1340400 original size:40 final size:41
Alignment explanation
Indices: 1340302--1340412 Score: 143
Period size: 40 Copynumber: 2.7 Consensus size: 41
1340292 ATCTTTTTCG
* * * *
1340302 TTGCGATTCTCTCAGTCGCATTGCGATTTTCTTCTAAATCGCG
1 TTGCGATTCTCTCAATCGCATTGCGA--TTCATATAAATCGCA
*
1340345 TTGCGACTCTCTCAATCGCATTGCGATT-ATATAAATCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCATATAAATCGCA
*
1340385 TTGCGATTCTATCAATCGCATTGCGATT
1 TTGCGATTCTCTCAATCGCATTGCGATT
1340413 TTCTTCTAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 35 0.57
41 2 0.03
43 24 0.39
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (41 bp):
TTGCGATTCTCTCAATCGCATTGCGATTCATATAAATCGCA
Found at i:1340476 original size:20 final size:20
Alignment explanation
Indices: 1340447--1340500 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
1340437 TGGAAGCTCG
* *
1340447 CGTTGTGATTTTCTTTTGAC
1 CGTTGCGATTTTCTTTTGAA
*
1340467 CGTTGCGATTTTCTTTTTAA
1 CGTTGCGATTTTCTTTTGAA
1340487 CGTTGCGATTTTCT
1 CGTTGCGATTTTCT
1340501 AAATCGCGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.17, G:0.19, T:0.54
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTGAA
Found at i:1340527 original size:19 final size:20
Alignment explanation
Indices: 1340487--1340537 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
1340477 TTCTTTTTAA
*
1340487 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCGAAATCG
*
1340507 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCGAAATCG
1340526 CGTTGCGATTTT
1 CGTTGCGATTTT
1340538 ATTGGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTTCGAAATCG
Found at i:1343283 original size:2 final size:2
Alignment explanation
Indices: 1343276--1343339 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
1343266 TTCAATAATT
1343276 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1343318 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
1343340 ATCTTTAATC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1344849 original size:22 final size:22
Alignment explanation
Indices: 1344821--1344872 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
1344811 GACCCGAAAT
1344821 AATAAAAA-AATTATTTTTATTC
1 AATAAAAATAATT-TTTTTATTC
1344843 AATAAAAATAATTTTTTTATTC
1 AATAAAAATAATTTTTTTATTC
1344865 AATAAAAA
1 AATAAAAA
1344873 CAGTGACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAAAAATAATTTTTTTATTC
Found at i:1345304 original size:257 final size:253
Alignment explanation
Indices: 1344843--1345354 Score: 750
Period size: 257 Copynumber: 2.0 Consensus size: 253
1344833 ATTTTTATTC
* *
1344843 AATAAAAATAATTTTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAACATTTATATATAGAG
1 AATAAAAATAATTGTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAACAATTATATATAGAG
* * *
1344908 GGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTAATGTAATTTTGGGTCGGGTCGGG
66 GGGTATTATTATAATTATTCCTAAATATATAAGGTAAAATTAATATAATATT--GT---GTCGGG
*
1344973 TCGGGTATTTTTCACCCTAAACCCGACCCGAATATCACACTTAAAAAAACTGACCCGACCCGACC
126 TCGGGTATTTTTCACCCTAAACCCGACCCGAATATCACACTTAAAAAAACCGACCCGACCCGACC
* *
1345038 AAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCGACCCGAAAT
191 AAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACCCAACCCGAAAT
1345101 AATAAAAA-AA-TGTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAA-AATTATATATAGAG
1 AATAAAAATAATTGTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAACAATTATATATAGAG
1345163 GGGTATTATTATAATTATTCCTAAATATATAAGGTAAAATT-ATAT-ATATT-T-TCGGGTCGGG
66 GGGTATTATTATAATTATTCCTAAATATATAAGGTAAAATTAATATAATATTGTGTCGGGTCGGG
*
1345224 TATTTTTCACCCTAAACCCGAATTCGACCCGACCCGAATATCACACTTAAAAAAACCGACCCGAT
131 TATTTTTCACCCT-------AA----ACCCGACCCGAATATCACACTTAAAAAAACCGACCCGAC
1345289 CCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACCCAACCCG
185 CCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACCCAACCCG
1345354 A
250 A
1345355 CCCGAAATAA
Statistics
Matches: 234, Mismatches: 9, Indels: 23
0.88 0.03 0.09
Matches are distributed among these distances:
246 23 0.10
250 1 0.00
253 6 0.03
254 3 0.01
255 53 0.23
256 37 0.16
257 103 0.44
258 8 0.03
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (253 bp):
AATAAAAATAATTGTTTTATTCAATAAAAACAGTGACTTAATTGAAAAAACAATTATATATAGAG
GGGTATTATTATAATTATTCCTAAATATATAAGGTAAAATTAATATAATATTGTGTCGGGTCGGG
TATTTTTCACCCTAAACCCGACCCGAATATCACACTTAAAAAAACCGACCCGACCCGACCAAAAT
AAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACCCAACCCGAAAT
Found at i:1346262 original size:14 final size:14
Alignment explanation
Indices: 1346237--1346269 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1346227 TAGAGGGAGG
1346237 GAAAATCAAAAAAA
1 GAAAATCAAAAAAA
1346251 TGAAAA-CAAAAAAA
1 -GAAAATCAAAAAAA
1346265 GAAAA
1 GAAAA
1346270 AATTTGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 8 0.44
15 5 0.28
ACGTcount: A:0.79, C:0.06, G:0.09, T:0.06
Consensus pattern (14 bp):
GAAAATCAAAAAAA
Found at i:1349394 original size:19 final size:19
Alignment explanation
Indices: 1349370--1349409 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
1349360 TCAGCATAGC
1349370 GGGGGCATTAACTCAGTTA
1 GGGGGCATTAACTCAGTTA
1349389 GGGGGCATTAACTCAGTTA
1 GGGGGCATTAACTCAGTTA
1349408 GG
1 GG
1349410 TTACAGAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (19 bp):
GGGGGCATTAACTCAGTTA
Found at i:1352449 original size:10 final size:10
Alignment explanation
Indices: 1352434--1352459 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1352424 TTCTGATGAT
1352434 TTAATGTGAA
1 TTAATGTGAA
1352444 TTAATGTGAA
1 TTAATGTGAA
1352454 TTAATG
1 TTAATG
1352460 ATGATAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (10 bp):
TTAATGTGAA
Found at i:1355350 original size:31 final size:31
Alignment explanation
Indices: 1355314--1355372 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
1355304 AACTTAAAAG
* *
1355314 AGTTTTGCAATACTGATATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
1355345 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
1355373 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:1355407 original size:14 final size:14
Alignment explanation
Indices: 1355388--1355440 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
1355378 CAACTACAAC
1355388 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
1355402 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
1355420 AATAAATTATTTAA
1 AATAAATTATTTAA
1355434 AATAAAT
1 AATAAAT
1355441 CAATCCATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:1355426 original size:32 final size:32
Alignment explanation
Indices: 1355388--1355552 Score: 184
Period size: 32 Copynumber: 5.7 Consensus size: 32
1355378 CAACTACAAC
*
1355388 AATAAATTATTTAAAATAAATCAATTCATACT
1 AATAAATTATTTAAAATAAATCAATCCATACT
1355420 AATAAATTATTTAAAATAAATCAATCCATAC-
1 AATAAATTATTTAAAATAAATCAATCCATACT
*
1355451 AACTACA--A--T--AATAAATCAATCC--A-T
1 AA-TAAATTATTTAAAATAAATCAATCCATACT
1355475 -AT------TTTAAAATAAATCAATCCATACT
1 AATAAATTATTTAAAATAAATCAATCCATACT
1355500 AATAAATTATTTAAAATAAATCAATCCATACT
1 AATAAATTATTTAAAATAAATCAATCCATACT
1355532 AATAAATTATTTAAAATAAAT
1 AATAAATTATTTAAAATAAAT
1355553 TATTTTATAA
Statistics
Matches: 115, Mismatches: 2, Indels: 32
0.77 0.01 0.21
Matches are distributed among these distances:
20 1 0.01
22 14 0.12
23 1 0.01
24 2 0.02
25 1 0.01
26 15 0.13
28 1 0.01
30 1 0.01
31 2 0.02
32 77 0.67
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (32 bp):
AATAAATTATTTAAAATAAATCAATCCATACT
Found at i:1355506 original size:22 final size:23
Alignment explanation
Indices: 1355431--1355505 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
1355421 ATAAATTATT
1355431 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
1355453 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
1355479 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
1355502 TAAA
1 TAAA
1355506 TTATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:1355564 original size:15 final size:15
Alignment explanation
Indices: 1355532--1355649 Score: 112
Period size: 15 Copynumber: 7.5 Consensus size: 15
1355522 AATCCATACT
1355532 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
1355546 AATAAATTATTTTATAATA
1 AATAAATTA-TTT-T-A-A
* *
1355565 AATCAATCCATATTTTAT
1 AATAAAT---TATTTTAA
* *
1355583 AATAATTTTTTTTAA
1 AATAAATTATTTTAA
* *
1355598 AATTAATTATTTTAT
1 AATAAATTATTTTAA
1355613 AATAAATTATTTTAA
1 AATAAATTATTTTAA
1355628 AATAAATTATTTTAA
1 AATAAATTATTTTAA
1355643 AATAAAT
1 AATAAAT
1355650 AACCTTATTA
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
14 9 0.11
15 52 0.62
16 2 0.02
17 1 0.01
18 6 0.07
19 8 0.10
20 1 0.01
21 3 0.04
22 2 0.02
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:1355572 original size:47 final size:49
Alignment explanation
Indices: 1355500--1355619 Score: 147
Period size: 52 Copynumber: 2.4 Consensus size: 49
1355490 AATCCATACT
* *
1355500 AATAAATTA-TTTAAAATAAATCAATCCATA-CTAATAA-ATTATTTAA
1 AATAAATTATTTTATAATAAATCAATCCATATATAATAATATTATTTAA
* *
1355546 AATAAATTATTTTATAATAAATCAATCCATATTTTATAATAATTTTTTTTAA
1 AATAAATTATTTTATAATAAATCAATCCATA---TATAATAATATTATTTAA
*
1355598 AATTAATTATTTTATAATAAAT
1 AATAAATTATTTTATAATAAAT
1355620 TATTTTAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
46 9 0.14
47 20 0.32
51 6 0.10
52 28 0.44
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (49 bp):
AATAAATTATTTTATAATAAATCAATCCATATATAATAATATTATTTAA
Found at i:1355619 original size:19 final size:19
Alignment explanation
Indices: 1355545--1355621 Score: 53
Period size: 19 Copynumber: 4.3 Consensus size: 19
1355535 AAATTATTTA
*
1355545 AAATAAATTATTTTATAAT
1 AAATTAATTATTTTATAAT
*
1355564 AAATCAATCCATATTTTATAAT
1 AAATTAAT---TATTTTATAAT
1355586 -AA-T--TT-TTTT-T-A-
1 AAATTAATTATTTTATAAT
1355597 AAATTAATTATTTTATAAT
1 AAATTAATTATTTTATAAT
1355616 AAATTA
1 AAATTA
1355622 TTTTAAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 22
0.65 0.03 0.32
Matches are distributed among these distances:
12 3 0.07
13 2 0.04
14 4 0.09
15 3 0.07
16 4 0.09
17 1 0.02
18 2 0.04
19 13 0.29
21 2 0.04
22 11 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTAATTATTTTATAAT
Found at i:1358797 original size:35 final size:36
Alignment explanation
Indices: 1358715--1358801 Score: 106
Period size: 35 Copynumber: 2.4 Consensus size: 36
1358705 TACCAAAATT
* *
1358715 TTACCAAACTTTG-AAAAACATTTTTCAAAGAAACAT
1 TTACCAAACTTTGAAAAAACATTTTCCAAAG-AACAG
***
1358751 TTACCAAACTTTGAAAAAACATTTTCCAAAG-TTGG
1 TTACCAAACTTTGAAAAAACATTTTCCAAAGAACAG
1358786 TTACCAAACTTTGAAA
1 TTACCAAACTTTGAAA
1358802 CTTTTAACAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 16 0.36
36 13 0.29
37 16 0.36
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (36 bp):
TTACCAAACTTTGAAAAAACATTTTCCAAAGAACAG
Found at i:1362839 original size:16 final size:16
Alignment explanation
Indices: 1362815--1362848 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1362805 TATCGCCGAC
*
1362815 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
1362831 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
1362847 CG
1 CG
1362849 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:1363363 original size:35 final size:36
Alignment explanation
Indices: 1363281--1363367 Score: 106
Period size: 35 Copynumber: 2.4 Consensus size: 36
1363271 TACCAAAATT
* *
1363281 TTACCAAACTTTG-AAAAACATTTTTCAAAGAAACAT
1 TTACCAAACTTTGAAAAAACATTTTCCAAAG-AACAG
***
1363317 TTACCAAACTTTGAAAAAACATTTTCCAAAG-TTGG
1 TTACCAAACTTTGAAAAAACATTTTCCAAAGAACAG
1363352 TTACCAAACTTTGAAA
1 TTACCAAACTTTGAAA
1363368 CTTTTAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 16 0.36
36 13 0.29
37 16 0.36
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (36 bp):
TTACCAAACTTTGAAAAAACATTTTCCAAAGAACAG
Found at i:1366809 original size:44 final size:45
Alignment explanation
Indices: 1366761--1366857 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
1366751 CACAGGAAAC
* *
1366761 GCATCGATGCA-CCCCGTAAAATGGAAACATCGAATGCAATTAGT
1 GCATCGATGCATCCCCGTAAAATGAAAACATCGAAGGCAATTAGT
* * *
1366805 GCATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTAATTTGT
1 GCATCGATGCATCCCCGTAAAATGAAAACATCGAAGGCAATTAGT
*
1366850 GTATCGAT
1 GCATCGAT
1366858 ACATGGGTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 11 0.24
45 35 0.76
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (45 bp):
GCATCGATGCATCCCCGTAAAATGAAAACATCGAAGGCAATTAGT
Found at i:1366913 original size:20 final size:22
Alignment explanation
Indices: 1366868--1366925 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
1366858 ACATGGGTAG
1366868 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
1366892 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
1366912 TGCATCGATGCACT
1 TGCATCGATGCACT
1366926 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:1367605 original size:20 final size:21
Alignment explanation
Indices: 1367580--1367636 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
1367570 AGGGTTCATA
1367580 GGTCCTTCGGGACA-TACAGT
1 GGTCCTTCGGGACATTACAGT
* *
1367600 GGTCCTTAGGGACATTTTATAGT
1 GGTCCTTCGGGACA--TTACAGT
1367623 GGTCCTTCGGGACA
1 GGTCCTTCGGGACA
1367637 AATTCATAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.42
23 18 0.58
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (21 bp):
GGTCCTTCGGGACATTACAGT
Found at i:1371031 original size:64 final size:63
Alignment explanation
Indices: 1370919--1371055 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 63
1370909 TGCACAGCGC
* *
1370919 ATCGATGCACCCCTTAAAATGGAAACATCAAATGCAATTGGTGCATCGATGCATAAGG-AGTGA
1 ATCGATGCACCCCTTAAAATGAAAACATCAAAGGCAATTGGTGCATCGATGCAT-AGGTAGTGA
* * ** * * *
1370982 ATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTAATTTTTGTATCGATGCATGGGTAGTGC
1 ATCGATGCA-CCCCTTAAAATGAAAACATCAAAGGCAATTGGTGCATCGATGCATAGGTAGTGA
1371046 ATCGATGCAC
1 ATCGATGCAC
1371056 ATGTTAAAGA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 12 0.19
64 51 0.81
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (63 bp):
ATCGATGCACCCCTTAAAATGAAAACATCAAAGGCAATTGGTGCATCGATGCATAGGTAGTGA
Found at i:1371088 original size:20 final size:23
Alignment explanation
Indices: 1371043--1371099 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 23
1371033 GCATGGGTAG
1371043 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCACATGTT-AAGAA
1371067 TGCATCGATGCA-ATG-T-AGAA
1 TGCATCGATGCACATGTTAAGAA
1371087 TGCATCGATGCAC
1 TGCATCGATGCAC
1371100 TTCAAGGGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 16 0.50
22 1 0.03
23 3 0.09
24 12 0.38
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (23 bp):
TGCATCGATGCACATGTTAAGAA
Found at i:1371802 original size:23 final size:22
Alignment explanation
Indices: 1371755--1371820 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
1371745 AGGGTTCATA
*
1371755 GGTCCTTCGGGACA-T-ACAGT
1 GGTCCTTCGGGACATTCATAGT
1371775 GGTCCTTCGGGACATTTCATAGT
1 GGTCCTTCGGGACA-TTCATAGT
1371798 GGTCCTTCGGGACAAATTCATAG
1 GGTCCTTCGGGAC--ATTCATAG
1371821 CCCTTAGTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 14 0.35
22 1 0.03
23 17 0.43
24 7 0.17
25 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (22 bp):
GGTCCTTCGGGACATTCATAGT
Found at i:1374260 original size:17 final size:18
Alignment explanation
Indices: 1374234--1374272 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
1374224 ATAAATAAAT
* *
1374234 AAATATATTTAATTTTTA
1 AAATATATTTAAATTATA
1374252 AAATA-ATTTAAATTATA
1 AAATATATTTAAATTATA
1374269 AAAT
1 AAAT
1374273 TAAATAGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATATATTTAAATTATA
Found at i:1377205 original size:25 final size:25
Alignment explanation
Indices: 1377171--1377222 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1377161 GATGATGATT
1377171 TCCGGGAAGTATTACACCGAAGATA
1 TCCGGGAAGTATTACACCGAAGATA
1377196 TCCGGGAAGTATTACACCGAAGATA
1 TCCGGGAAGTATTACACCGAAGATA
1377221 TC
1 TC
1377223 ATGACCTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (25 bp):
TCCGGGAAGTATTACACCGAAGATA
Found at i:1377412 original size:14 final size:14
Alignment explanation
Indices: 1377393--1377419 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1377383 CATTGAACAA
1377393 GAAATAAGAGATTT
1 GAAATAAGAGATTT
1377407 GAAATAAGAGATT
1 GAAATAAGAGATT
1377420 CAGGGAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (14 bp):
GAAATAAGAGATTT
Found at i:1378881 original size:20 final size:20
Alignment explanation
Indices: 1378845--1378882 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1378835 ATCTTATTCC
**
1378845 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
1378865 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
1378883 ATGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:1382161 original size:24 final size:24
Alignment explanation
Indices: 1382131--1382184 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
1382121 TGGAAGGATC
1382131 ACCTGAACTTCAACTATAGACAGA
1 ACCTGAACTTCAACTATAGACAGA
* **
1382155 TCCTGAACTTCAGTTATAGACAGA
1 ACCTGAACTTCAACTATAGACAGA
1382179 ACCTGA
1 ACCTGA
1382185 GACCAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (24 bp):
ACCTGAACTTCAACTATAGACAGA
Found at i:1390949 original size:21 final size:21
Alignment explanation
Indices: 1390925--1390973 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
1390915 ATAATAAATT
*
1390925 TTTTTACTT-AAAATATTATTA
1 TTTTTA-TTAAAAATATTAATA
1390946 TTTTTATTAAAAATATTAATA
1 TTTTTATTAAAAATATTAATA
1390967 TATTTTA
1 T-TTTTA
1390974 ATATTTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTTATTAAAAATATTAATA
Found at i:1398127 original size:19 final size:20
Alignment explanation
Indices: 1398103--1398140 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
1398093 GAAACATTTT
1398103 TATGAATAATATT-ATACTA
1 TATGAATAATATTGATACTA
*
1398122 TATGAATAGTATTGATACT
1 TATGAATAATATTGATACT
1398141 GTGCAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
TATGAATAATATTGATACTA
Found at i:1398238 original size:23 final size:22
Alignment explanation
Indices: 1398211--1398260 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
1398201 ATTCAGAATG
*
1398211 CTACAGGGGGTATCGATACCCTA
1 CTACA-GGGGTACCGATACCCTA
* *
1398234 CTACA-GTGTACCGATACCCTG
1 CTACAGGGGTACCGATACCCTA
1398255 CTACAG
1 CTACAG
1398261 TAATTTCGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 18 0.78
23 5 0.22
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (22 bp):
CTACAGGGGTACCGATACCCTA
Found at i:1398995 original size:31 final size:31
Alignment explanation
Indices: 1398957--1399050 Score: 138
Period size: 31 Copynumber: 3.0 Consensus size: 31
1398947 CCCGAAGGAC
*
1398957 CAGTCCATA-GATCCCGAAGAATC-TAGGTAAT
1 CAGTCCATATG-TCCCGAAGAA-CATAGGTAAA
*
1398988 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1399019 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1399050 C
1 C
1399051 CCTCGACTCT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
30 1 0.02
31 56 0.97
32 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1405649 original size:3 final size:3
Alignment explanation
Indices: 1405641--1405723 Score: 148
Period size: 3 Copynumber: 27.7 Consensus size: 3
1405631 TTTTTATCCA
* *
1405641 TAT TAT TAT TTT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1405689 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1405724 ATTTATATTA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1406259 original size:21 final size:22
Alignment explanation
Indices: 1406226--1406267 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1406216 AACAGAACCG
1406226 GAGAGAAAGAAAAAAA-AAACA
1 GAGAGAAAGAAAAAAACAAACA
1406247 GAGA-AAAGAAAAAAAACAAAC
1 GAGAGAAAG-AAAAAAACAAAC
1406268 TATACCAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.76, C:0.07, G:0.17, T:0.00
Consensus pattern (22 bp):
GAGAGAAAGAAAAAAACAAACA
Found at i:1418173 original size:7 final size:7
Alignment explanation
Indices: 1418161--1418203 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
1418151 GAAGAGAAAG
1418161 AAAAGAA
1 AAAAGAA
1418168 AAAAGAA
1 AAAAGAA
*
1418175 AAGAAAAA
1 AA-AAGAA
1418183 AAATAGAA
1 AAA-AGAA
*
1418191 AATAGAA
1 AAAAGAA
1418198 AAAAGA
1 AAAAGA
1418204 GAAGAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
7 19 0.63
8 11 0.37
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (7 bp):
AAAAGAA
Found at i:1418174 original size:12 final size:12
Alignment explanation
Indices: 1418157--1418199 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
1418147 GCTTGAAGAG
1418157 AAAGAAAAGAAA
1 AAAGAAAAGAAA
1418169 AAAGAAAAGAAA
1 AAAGAAAAGAAA
*
1418181 AAA-AATAGAAA
1 AAAGAAAAGAAA
*
1418192 ATAGAAAA
1 AAAGAAAA
1418200 AAGAGAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:1418185 original size:16 final size:17
Alignment explanation
Indices: 1418152--1418216 Score: 69
Period size: 18 Copynumber: 3.7 Consensus size: 17
1418142 ATTATGCTTG
*
1418152 AAGAGAAAGAAAAGAAAA
1 AAGAAAAAGAAAA-AAAA
1418170 AAG-AAAAGAAAAAAAA
1 AAGAAAAAGAAAAAAAA
* *
1418186 TAGAAAATAGAAAAAAGAG
1 AAGAAAA-AGAAAAAA-AA
1418205 AAGAAAAAGAAA
1 AAGAAAAAGAAA
1418217 GAGGGTCAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
16 6 0.15
17 11 0.28
18 16 0.40
19 7 0.17
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAGAAAAAGAAAAAAAA
Found at i:1419488 original size:83 final size:83
Alignment explanation
Indices: 1419349--1419940 Score: 1018
Period size: 83 Copynumber: 7.1 Consensus size: 83
1419339 CATTAAATGA
*
1419349 AAGATGAATTTGTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
1419414 ATCAATCATTGAATATGG
66 ATCAATCATTGAATTTGG
*
1419432 AAGATAAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1419497 ATCAATCATTGAATTTGG
66 ATCAATCATTGAATTTGG
1419515 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
1419580 ATCAATCATTGAATATGG
66 ATCAATCATTGAATTTGG
1419598 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1419663 ATCAATCATTGAATTTGG
66 ATCAATCATTGAATTTGG
1419681 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1419746 ATCAATCATTGAATTTGG
66 ATCAATCATTGAATTTGG
1419764 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
1419829 ACCAATCATTGAATTTGG
66 ATCAATCATTGAATTTGG
* *
1419847 -AG--G-A--TGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTTATCTGATTTGGTTG
1 AAGATGAATTTG-TTAATAGCATCTTCTGGAAGTGTTCTTTGAG-----TTATCTGATCTGGTTG
1419906 GACAGAA-CAATCATTGAATTTGG
60 GACAGAATCAATCATTGAATTTGG
1419929 AAGATGAATTTG
1 AAGATGAATTTG
1419941 CTCATAGTAA
Statistics
Matches: 488, Mismatches: 9, Indels: 19
0.95 0.02 0.04
Matches are distributed among these distances:
77 2 0.00
78 30 0.06
79 1 0.00
80 1 0.00
82 18 0.04
83 432 0.89
85 1 0.00
86 1 0.00
88 2 0.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (83 bp):
AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
ATCAATCATTGAATTTGG
Found at i:1420766 original size:113 final size:113
Alignment explanation
Indices: 1420568--1421205 Score: 1012
Period size: 113 Copynumber: 5.6 Consensus size: 113
1420558 ATTTCAGATC
* *
1420568 CACTTGATGGATCATTCATTGCCAGATAA-GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 CACTTGATGGATCATT-TTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
*
1420632 AAGAAGTTCATAATGAGAAGAACTTATTCAATCTTTTGCCTGAATTCAT
65 AAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
*
1420681 CACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1 CACTTGATGGATCATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1420746 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
66 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
*
1420794 CACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1 CACTTGATGGATCATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1420859 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
66 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
*
1420907 CACTTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1 CACTTGATGGATCATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
*
1420972 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTCAT
66 AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
* ** * *
1421020 CATTTGATGGATCAACTTTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAAG
1 CACTTGATGGATCATTTTTGCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCATCTGAAGAAGG
*
1421084 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTTGCTTGAATTCAT
62 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATC-TTTTGCCTGAATTCAT
* ** ** * *
1421137 CATTTGATGGATCATCATCCCCAGCAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG-AG
1 CACTTGATGGATCATTTTTGCCAG-AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1421201 AAGAA
65 AAGAA
1421206 TTTATTCAAT
Statistics
Matches: 500, Mismatches: 17, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
112 13 0.03
113 360 0.72
114 7 0.01
115 15 0.03
116 50 0.10
117 36 0.07
118 17 0.03
119 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (113 bp):
CACTTGATGGATCATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
AGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCCTGAATTCAT
Found at i:1421350 original size:3 final size:3
Alignment explanation
Indices: 1421342--1421447 Score: 196
Period size: 3 Copynumber: 35.7 Consensus size: 3
1421332 TTTTTATCCA
*
1421342 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1421390 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1421437 TAT TAT TAT TA
1 TAT TAT TAT TA
1421448 ATTTATATTA
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 98 0.98
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:1426863 original size:61 final size:61
Alignment explanation
Indices: 1426797--1426934 Score: 195
Period size: 61 Copynumber: 2.3 Consensus size: 61
1426787 ATGCCTACAT
* * * *
1426797 GTCCATAAGGACTTGCCACAATGCACATAGTAAATGAGCCACCCTATGAGAGTGCCATAGG
1 GTCCATAAGGACTTACAACAATGCACAAAGTAAATGAGCCACCCTATGAGAGTGCCATAGA
* * * *
1426858 GTCCATAAGAACTTACAACAGTGCACAAAGTAAATGTGCCACCCTATGGGAGTGCCATAGA
1 GTCCATAAGGACTTACAACAATGCACAAAGTAAATGAGCCACCCTATGAGAGTGCCATAGA
*
1426919 GTCCATAAGGTCTTAC
1 GTCCATAAGGACTTAC
1426935 CAATAGGTCT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 67 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (61 bp):
GTCCATAAGGACTTACAACAATGCACAAAGTAAATGAGCCACCCTATGAGAGTGCCATAGA
Found at i:1429788 original size:2 final size:2
Alignment explanation
Indices: 1429783--1429819 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1429773 ATGTACATTA
1429783 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1429820 ATTTTGGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1430024 original size:18 final size:19
Alignment explanation
Indices: 1429990--1430031 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
1429980 CCATATAATA
*
1429990 AAAACTATATTTCATA-TC
1 AAAACTATATCTCATATTC
1430008 AAAACTATATACT-ATATTC
1 AAAACTATAT-CTCATATTC
1430027 AAAAC
1 AAAAC
1430032 AACGTCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAACTATATCTCATATTC
Found at i:1430122 original size:18 final size:19
Alignment explanation
Indices: 1430101--1430155 Score: 80
Period size: 18 Copynumber: 3.1 Consensus size: 19
1430091 AAAACACACC
1430101 ATCATATTAAAAACTA-AT
1 ATCATATTAAAAACTATAT
*
1430119 ATCATATT-AAAATTATAT
1 ATCATATTAAAAACTATAT
1430137 ATCATATT-AAAACTATAT
1 ATCATATTAAAAACTATAT
1430155 A
1 A
1430156 CTAATATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.18
18 28 0.82
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (19 bp):
ATCATATTAAAAACTATAT
Found at i:1430876 original size:14 final size:13
Alignment explanation
Indices: 1430845--1430882 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
1430835 TTATTTAATG
1430845 ATTATAATTAAGA
1 ATTATAATTAAGA
*
1430858 TTTATAATATAAGA
1 ATTATAAT-TAAGA
1430872 ATTATAATTAA
1 ATTATAATTAA
1430883 TGTAGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (13 bp):
ATTATAATTAAGA
Found at i:1431039 original size:16 final size:16
Alignment explanation
Indices: 1431018--1431081 Score: 119
Period size: 16 Copynumber: 4.0 Consensus size: 16
1431008 CTTATAAGTT
1431018 AGTTAGGTAAATATCA
1 AGTTAGGTAAATATCA
1431034 AGTTAGGTAAATATCA
1 AGTTAGGTAAATATCA
*
1431050 AGTTTGGTAAATATCA
1 AGTTAGGTAAATATCA
1431066 AGTTAGGTAAATATCA
1 AGTTAGGTAAATATCA
1431082 GATCAACTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (16 bp):
AGTTAGGTAAATATCA
Found at i:1431161 original size:11 final size:11
Alignment explanation
Indices: 1431145--1431174 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
1431135 CATCATATGT
1431145 CAGGTTGATAA
1 CAGGTTGATAA
1431156 CAGGTTGATAA
1 CAGGTTGATAA
1431167 CAGGTTGA
1 CAGGTTGA
1431175 ATAATATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (11 bp):
CAGGTTGATAA
Found at i:1438473 original size:21 final size:19
Alignment explanation
Indices: 1438435--1438473 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
1438425 TCATAGTTCA
*
1438435 GAAATTTTATAAGGGTTTT
1 GAAATTTTATAAGAGTTTT
1438454 GAAATTTCTATTAAGAGTTT
1 GAAATTT-TA-TAAGAGTTT
1438474 CAAAACTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 2 0.12
21 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (19 bp):
GAAATTTTATAAGAGTTTT
Found at i:1441391 original size:14 final size:14
Alignment explanation
Indices: 1441372--1441398 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1441362 TACTTATTCT
1441372 CCATTGTTGAATTA
1 CCATTGTTGAATTA
1441386 CCATTGTTGAATT
1 CCATTGTTGAATT
1441399 CTTTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (14 bp):
CCATTGTTGAATTA
Found at i:1441856 original size:21 final size:20
Alignment explanation
Indices: 1441815--1441887 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 20
1441805 TACTGTTCAT
* *
1441815 AGTTTGGAAAC-TTTGTAAG
1 AGTTTTGAAACTTTTATAAG
1441834 AGTTTTGAAACTTTTATTAAG
1 AGTTTTGAAACTTTTA-TAAG
* * *
1441855 AGTTTCGAAAC-TTTACAAA
1 AGTTTTGAAACTTTTATAAG
1441874 AGTTTTGAAACTTT
1 AGTTTTGAAACTTT
1441888 GCACCCAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 22 0.49
20 9 0.20
21 14 0.31
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.41
Consensus pattern (20 bp):
AGTTTTGAAACTTTTATAAG
Found at i:1442641 original size:27 final size:27
Alignment explanation
Indices: 1442606--1442657 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1442596 AGCAAAGAAA
* * *
1442606 AAGAAGAACTAATATCCTAGAGAAAAC
1 AAGAAGAACCAAGATACTAGAGAAAAC
1442633 AAGAAGAACCAAGATACTAGAGAAA
1 AAGAAGAACCAAGATACTAGAGAAA
1442658 GTTAATGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.58, C:0.13, G:0.17, T:0.12
Consensus pattern (27 bp):
AAGAAGAACCAAGATACTAGAGAAAAC
Found at i:1445843 original size:19 final size:20
Alignment explanation
Indices: 1445819--1445857 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
1445809 ATTCAAACAC
1445819 TTTAGATTTTATTA-TTTTA
1 TTTAGATTTTATTAGTTTTA
1445838 TTTAGATTTTATTAGTTTTA
1 TTTAGATTTTATTAGTTTTA
1445858 GTAGGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (20 bp):
TTTAGATTTTATTAGTTTTA
Found at i:1448556 original size:48 final size:48
Alignment explanation
Indices: 1448502--1448709 Score: 416
Period size: 48 Copynumber: 4.3 Consensus size: 48
1448492 CTATTTTGAA
1448502 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1448550 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1448598 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1448646 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1 TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
1448694 TAAAATGGAAAGTTGA
1 TAAAATGGAAAGTTGA
1448710 AAAATGTTAT
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 160 1.00
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (48 bp):
TAAAATGGAAAGTTGATATGAATTCTAAAAGAATTCATAAATGGTAGT
Found at i:1459926 original size:17 final size:17
Alignment explanation
Indices: 1459885--1459919 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1459875 CTATAGGTGC
*
1459885 TGTCTATCCTACTCTAG
1 TGTCTATCATACTCTAG
1459902 TGTCTATCATACTCTAG
1 TGTCTATCATACTCTAG
1459919 T
1 T
1459920 TCCTATCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (17 bp):
TGTCTATCATACTCTAG
Found at i:1474217 original size:16 final size:16
Alignment explanation
Indices: 1474198--1474228 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1474188 AAAATTAATT
*
1474198 TTTGGTCGAAGTCAAC
1 TTTGGTCAAAGTCAAC
1474214 TTTGGTCAAAGTCAA
1 TTTGGTCAAAGTCAA
1474229 TGGTTTAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (16 bp):
TTTGGTCAAAGTCAAC
Done.