genome.fa.s8118.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008118.1 Hibiscus syriacus cultivar Beakdansim tig00110657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  238723

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707--1257	84	6.7	81	84	4	563	30	24	20	24	1.99
707--1257	165	3.4	164	79	7	552	30	24	20	24	1.99
2020--2055	2	18.5	2	94	5	65	50	0	0	50	1.00
2040--2188	34	4.6	32	74	17	103	44	3	6	46	1.44
2279--2352	3	24.3	3	74	17	64	31	1	1	66	1.09
8543--8582	20	2.1	19	90	9	64	60	10	0	30	1.30
9198--9228	4	7.8	4	100	0	62	22	0	0	77	0.77
16526--16598	36	2.0	36	100	0	146	28	8	19	43	1.79
32491--32564	16	4.2	16	79	18	85	43	6	24	25	1.79
32502--32570	22	3.4	21	77	22	85	40	8	24	26	1.84
32491--32571	38	2.1	38	93	0	144	43	7	23	25	1.80
33093--33156	28	2.3	28	91	2	103	42	35	9	12	1.75
33142--33232	32	2.8	32	88	0	137	32	28	12	26	1.92
35852--35877	12	2.2	12	100	0	52	61	0	0	38	0.96
36988--37276	20	14.4	20	83	5	325	35	25	18	19	1.95
37959--38005	24	2.0	24	87	8	69	25	14	21	38	1.92
40486--40777	19	16.4	19	82	14	383	46	18	20	14	1.83
40486--40799	52	5.9	54	85	11	349	46	18	20	14	1.84
40486--40815	179	1.9	176	91	4	538	46	18	20	15	1.84
40772--40915	72	2.0	71	79	4	155	21	21	16	40	1.91
40806--40915	19	6.0	19	86	11	167	14	22	16	46	1.83
41012--41047	13	2.6	14	86	4	56	47	22	0	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42982--43074	33	2.8	33	96	0	177	48	20	20	10	1.79
43001--43057	14	3.7	14	79	20	69	47	21	21	10	1.80
42945--43079	19	7.6	19	78	16	137	46	22	19	11	1.81
42945--43079	52	2.5	54	77	18	140	46	22	19	11	1.81
43075--43187	19	6.5	19	74	19	120	7	17	28	46	1.74
43075--43166	33	2.8	33	93	3	150	7	18	28	45	1.76
43244--44085	93	9.1	93	98	1	1638	46	18	12	21	1.83
43244--44085	185	4.5	186	98	0	1638	46	18	12	21	1.83
45222--45311	14	5.7	14	74	23	81	42	23	25	8	1.83
45214--45327	33	3.5	33	92	0	192	44	22	23	8	1.81
45323--45387	19	3.7	19	74	19	77	10	23	21	44	1.83
45345--45399	14	3.6	14	73	21	56	9	25	23	41	1.83
45328--45399	33	2.2	33	100	0	144	9	23	22	44	1.82
45337--45421	33	2.5	33	90	1	125	10	25	21	42	1.85
45352--45440	20	4.8	20	72	19	75	12	24	19	43	1.85
45520--45588	32	2.2	32	91	0	111	46	20	21	11	1.82
45539--45588	16	3.0	18	69	22	54	44	22	22	12	1.85
45767--45821	22	2.5	22	81	0	74	20	16	40	23	1.91
45967--46159	20	9.6	20	82	5	219	19	19	25	35	1.95
45967--46159	60	3.2	60	83	0	251	19	19	25	35	1.95
46215--46266	20	2.6	20	96	0	95	21	13	26	38	1.90
46464--46909	218	2.0	219	96	0	824	30	15	8	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54694--54723	15	2.0	15	93	0	51	13	0	3	83	0.77
60852--60878	2	13.5	2	100	0	54	48	0	0	51	1.00
63902--64064	60	2.7	60	79	11	165	44	4	19	30	1.72
63902--64081	59	3.0	59	76	14	154	45	5	18	31	1.72
69558--69597	20	2.0	20	95	0	71	40	20	17	22	1.92
70184--70232	20	2.5	20	86	0	71	34	24	20	20	1.96
72135--72278	20	7.5	20	81	9	183	40	20	18	20	1.92
72306--72397	40	2.5	37	84	11	109	18	19	20	41	1.91
72325--72411	20	4.3	20	92	0	147	18	17	21	42	1.89
72895--72999	21	5.0	21	71	3	86	20	36	19	23	1.95
72921--73002	42	2.0	42	82	4	103	21	37	19	20	1.94
74492--74587	33	2.8	33	84	3	111	42	18	22	15	1.88
74386--74856	237	2.0	237	97	0	879	33	13	19	32	1.91
74729--74824	33	2.8	33	90	3	138	41	20	23	13	1.88
74762--74829	19	3.8	19	72	21	74	45	19	22	13	1.84
74834--74961	20	6.7	20	76	10	115	15	21	23	39	1.92
77060--77084	12	2.1	12	100	0	50	32	16	16	36	1.90
77403--77456	24	2.2	24	93	0	90	40	20	18	20	1.91
78333--78426	20	4.6	20	89	5	107	28	18	23	29	1.97
78351--78425	21	3.6	21	89	5	91	33	17	22	26	1.96
78371--78432	21	2.9	22	83	11	76	35	14	24	25	1.93
79716--79772	21	2.7	21	77	0	60	36	26	14	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79753--79792	20	2.0	20	90	5	62	35	27	15	22	1.94
97409--97448	17	2.3	17	86	4	53	45	0	0	55	0.99
97758--97787	2	15.0	2	100	0	60	50	0	0	50	1.00
105677--105722	21	2.2	21	84	7	58	71	4	6	17	1.24
106162--106193	2	16.5	2	93	6	57	50	0	0	50	1.00
107303--107335	16	2.1	16	100	0	66	21	12	12	54	1.69
111375--111409	18	1.9	18	88	0	52	65	2	2	28	1.21
112547--112598	26	2.1	24	82	7	59	50	21	13	15	1.78
112620--112698	40	1.9	40	87	7	113	37	12	11	37	1.80
121881--121920	14	2.9	14	96	0	71	22	35	35	7	1.82
121967--122043	29	2.7	29	97	0	145	23	27	35	14	1.93
130278--130307	2	15.0	2	100	0	60	50	0	0	50	1.00
130278--130341	10	6.0	11	77	14	55	42	0	12	45	1.42
131350--131421	21	3.5	21	87	7	103	30	22	20	26	1.98
132230--132324	31	3.1	31	83	7	122	33	9	14	42	1.78
132558--132602	14	3.1	14	80	3	54	42	0	0	57	0.98
133798--133847	20	2.5	20	87	6	75	34	28	12	26	1.92
134845--134892	21	2.2	22	81	7	55	64	0	6	29	1.18
142329--142999	362	1.9	362	93	1	1175	24	18	24	32	1.97
144371--144401	14	2.3	14	94	5	55	29	0	0	70	0.87
151667--151707	21	2.0	20	86	13	57	36	0	0	63	0.95
153112--153170	30	2.0	30	100	0	118	33	6	3	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154912--154945	16	2.1	16	88	0	50	23	26	0	50	1.50
159472--159514	2	21.5	2	100	0	86	0	48	0	51	1.00
163435--163468	2	17.0	2	100	0	68	50	0	0	50	1.00
176768--176793	13	2.0	13	100	0	52	61	0	0	38	0.96
177937--178000	21	3.0	21	79	9	58	68	0	3	28	1.04
180681--180773	12	7.8	12	72	9	73	18	15	18	48	1.81
180684--180777	48	2.0	48	89	4	145	19	14	17	48	1.81
180710--180761	17	2.8	18	72	21	54	15	15	19	50	1.79
180681--180775	24	4.0	24	81	2	111	18	14	17	48	1.81
183695--183755	18	3.4	18	88	0	86	21	14	32	31	1.93
183695--183765	18	3.9	18	84	0	70	23	15	32	28	1.95
183695--183763	36	1.9	36	84	0	93	23	14	33	28	1.94
186195--186246	2	26.0	2	100	0	104	50	0	0	50	1.00
188880--189153	136	2.0	136	94	0	476	38	13	9	37	1.78
197104--197184	40	2.0	40	92	0	135	37	12	16	34	1.86
206580--206604	2	12.5	2	100	0	50	52	0	0	48	1.00
207287--207372	23	4.2	21	66	18	56	34	5	11	47	1.64
208210--208257	22	2.2	22	88	0	69	45	2	2	50	1.25
208218--208276	22	2.5	22	83	8	64	42	5	3	49	1.41
208027--208440	225	1.8	226	82	5	541	37	9	15	37	1.80
209689--209732	2	22.0	2	100	0	88	50	0	0	50	1.00
211646--211727	40	2.0	41	90	2	130	39	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225465--225526	7	9.0	7	75	21	51	74	0	11	14	1.08
225475--225520	21	2.1	21	88	8	65	73	0	10	15	1.08
225455--225524	37	2.0	35	83	10	90	71	0	12	15	1.15
226518--226675	53	2.9	53	88	5	228	30	15	27	27	1.96
226650--227105	51	8.6	50	80	10	376	33	17	24	23	1.96
226685--227049	160	2.3	159	83	6	470	34	17	25	22	1.96
226685--227117	55	8.1	54	82	6	463	33	18	25	22	1.96
226685--227105	215	2.0	213	88	4	623	33	18	24	23	1.96
226685--227105	160	2.6	155	79	12	451	33	18	24	23	1.96
232804--232886	29	2.8	29	90	1	130	42	9	15	32	1.80

Tables:   1   2