Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008119.1 Hibiscus syriacus cultivar Beakdansim tig00110669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56542

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1937--1993
21
2.7
21
75
5
53
29
22
26
21
1.99
2692--2720
2
14.5
2
100
0
58
51
0
0
48
1.00
3605--3649
20
2.2
20
96
0
81
68
0
6
24
1.13
5480--5508
14
2.0
15
93
6
51
41
0
3
55
1.17
7483--7524
2
21.0
2
100
0
84
50
0
0
50
1.00
8204--8289
23
4.2
21
66
18
56
34
5
11
47
1.64
9127--9182
22
2.5
22
85
2
76
42
5
1
50
1.35
8951--9359
227
1.8
226
81
4
518
37
9
15
37
1.80
10590--10637
2
24.0
2
100
0
96
50
0
0
50
1.00
12547--12627
40
2.0
40
95
0
144
37
11
16
35
1.84
14804--14844
2
20.5
2
94
0
73
51
0
0
48
1.00
16482--16540
21
2.8
21
87
5
84
28
20
27
23
1.99
22018--22053
2
18.0
2
100
0
72
50
0
0
50
1.00
22724--22809
23
4.2
21
66
18
56
34
5
11
47
1.64
23649--23691
22
2.0
22
85
0
59
46
4
2
46
1.36
25106--25159
2
27.0
2
100
0
108
50
0
0
50
1.00
27047--27127
40
2.0
40
92
0
135
37
9
17
35
1.83
28432--28514
29
2.8
29
90
1
130
42
9
15
32
1.80
33062--33144
29
2.8
29
90
1
130
42
9
15
32
1.80
34492--34528
2
18.5
2
94
0
65
51
0
0
48
1.00
35109--35160
21
2.5
21
81
3
61
38
19
25
17
1.93
35146--35276
41
3.4
41
80
11
152
37
22
17
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35149--35256
20
5.7
20
70
20
79
34
24
18
23
1.96
35168--35195
13
2.2
13
100
0
56
32
21
21
25
1.98
35149--35215
33
2.0
33
97
0
125
31
23
19
25
1.98
35202--35276
21
3.6
21
71
10
73
40
22
17
20
1.92
35444--35487
22
2.0
22
95
0
79
20
45
15
18
1.85
35731--35794
20
3.2
20
84
0
74
17
18
20
43
1.88
35931--35985
25
2.2
24
78
15
58
20
9
18
52
1.71
37200--37259
21
2.9
21
85
5
77
28
21
26
23
1.99
37685--37726
15
3.1
14
83
10
52
35
0
0
64
0.94
37966--38006
2
20.5
2
100
0
82
51
0
0
48
1.00
42730--42779
2
25.0
2
100
0
100
50
0
0
50
1.00
44379--44426
22
2.2
22
88
0
69
45
4
2
47
1.33
45908--45964
23
2.5
22
80
8
69
42
5
1
50
1.35
47361--47426
2
33.0
2
96
0
123
48
0
1
50
1.10

Tables:   1

The End!