genome.fa.s8120.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008120.1 Hibiscus syriacus cultivar Beakdansim tig00110670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  639723

Tables:   1   2   3   

This is table  3  of  3  ( 306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565403--565464	28	2.2	28	85	2	79	38	11	6	43	1.66
570485--570536	21	2.5	20	75	3	50	40	19	23	17	1.91
570525--570638	20	5.7	20	83	6	113	31	25	18	24	1.97
570522--570638	61	1.9	61	85	0	162	33	24	17	23	1.97
571196--571237	19	2.2	19	91	0	66	52	26	16	4	1.63
571233--571398	20	9.1	19	73	16	127	13	21	21	43	1.87
571238--571314	39	2.0	39	89	5	120	10	19	24	45	1.81
571286--571372	33	2.6	33	90	1	129	13	22	24	39	1.91
571276--571372	33	2.9	34	87	1	126	13	21	24	40	1.89
573960--573984	12	2.1	12	100	0	50	0	28	0	72	0.86
575197--575234	20	1.9	20	94	0	67	39	23	21	15	1.92
575385--575422	14	2.7	15	84	12	53	47	18	0	34	1.49
577248--577365	20	6.4	19	74	13	86	41	23	20	14	1.89
577322--577379	14	3.9	14	77	16	62	48	24	17	10	1.78
577306--577384	32	2.4	33	93	2	133	46	22	18	11	1.81
577407--577438	14	2.4	14	94	5	57	9	12	25	53	1.68
577391--577454	19	3.6	19	70	20	66	12	18	21	46	1.82
577439--577493	20	2.8	19	83	8	65	16	23	23	36	1.94
577550--577578	12	2.3	13	94	5	51	79	17	3	0	0.87
577975--578019	18	2.5	18	88	0	72	13	15	44	26	1.83
579338--579396	20	3.0	20	87	0	73	42	22	18	16	1.89
579422--579472	19	2.7	19	100	0	102	9	21	27	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579678--579721	22	2.0	22	95	0	79	18	15	45	20	1.85
579909--580042	20	6.7	20	85	5	153	25	18	26	29	1.98
580032--580124	20	4.5	21	75	4	91	18	24	17	39	1.91
579971--580105	41	3.3	41	81	4	130	20	21	20	37	1.94
580032--580120	41	2.2	41	97	0	169	17	24	15	41	1.89
584542--584609	19	3.5	19	71	11	57	38	1	4	55	1.29
584560--584624	20	3.3	20	70	10	53	44	0	3	52	1.16
584517--584678	38	4.3	38	82	5	195	45	2	3	48	1.33
584845--584918	30	2.5	30	86	0	94	41	4	14	39	1.65
588425--588507	31	2.7	31	84	0	112	38	19	9	32	1.84
588681--588914	117	2.0	117	93	0	396	35	22	18	23	1.95
590713--590825	58	1.9	58	92	0	190	35	19	8	36	1.83
591012--591157	37	3.9	38	80	3	154	45	5	6	41	1.54
591229--591315	28	3.2	28	61	12	72	40	10	9	40	1.71
591220--591331	54	2.1	54	100	0	224	39	11	7	41	1.69
594380--594442	30	2.1	30	100	0	126	36	6	6	50	1.53
599151--599229	2	39.5	2	97	0	149	50	1	0	48	1.08
599729--599768	2	20.0	2	100	0	80	50	0	0	50	1.00
606460--606531	36	2.0	35	83	5	90	48	1	4	45	1.30
606677--606714	20	1.9	20	88	0	58	21	26	10	42	1.85
611397--611845	229	2.0	227	94	0	790	45	8	7	39	1.61
611911--611957	20	2.4	19	89	10	76	55	10	17	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614424--614489	33	2.0	33	87	0	96	28	1	45	24	1.62
616285--616328	19	2.4	19	92	3	72	31	2	9	56	1.43
616410--618028	199	8.1	199	97	0	2994	37	14	15	32	1.88
616410--618028	399	4.1	398	96	0	2994	37	14	15	32	1.88
619493--619560	21	3.4	18	69	21	55	36	8	35	19	1.83
619493--619590	6	16.3	6	80	0	70	36	7	34	21	1.81
619508--619594	3	29.0	3	77	0	84	35	5	34	24	1.79
619496--619586	42	2.2	42	91	0	146	35	7	35	21	1.83
619493--619590	18	5.4	18	78	0	88	36	7	34	21	1.81
620957--621812	184	4.7	184	98	0	1640	35	14	15	34	1.89
624369--624431	23	2.7	23	90	0	90	36	6	19	38	1.77
624369--624441	23	3.2	23	86	3	85	35	5	19	39	1.75
624444--624482	20	2.0	20	89	0	60	25	15	10	48	1.76
624789--624851	23	2.7	23	90	0	90	36	6	19	38	1.77
624789--624861	23	3.2	23	86	3	85	35	5	19	39	1.75
624270--625281	430	2.4	421	97	2	1911	40	8	13	38	1.74
625219--625283	23	2.8	23	90	0	94	35	7	18	38	1.80
625487--625523	18	2.1	18	89	0	56	32	5	10	51	1.60
625479--625525	24	2.0	24	86	0	67	34	4	14	46	1.64
627598--627639	21	1.9	23	85	9	61	33	0	4	61	1.17
628608--628683	38	2.0	37	82	7	91	48	3	1	46	1.29
634889--634975	42	2.0	43	93	2	149	36	33	2	27	1.70

Tables:   1   2   3

The End!