Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008123.1 Hibiscus syriacus cultivar Beakdansim tig00110677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 770294
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 4
Found at i:611954 original size:11 final size:11
Alignment explanation
Indices: 611938--611998 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
611928 AACTAATCAA
611938 ATTTTATTAAT
1 ATTTTATTAAT
611949 ATTTTATTAA-
1 ATTTTATTAAT
** *
611959 ATTAAACT-AT
1 ATTTTATTAAT
*
611969 -TTTTA-TATT
1 ATTTTATTAAT
611978 ATTTTATTAAT
1 ATTTTATTAAT
611989 ATTTTATTAA
1 ATTTTATTAA
611999 ATTAAACTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
8 1 0.03
9 5 0.13
10 10 0.26
11 23 0.59
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
ATTTTATTAAT
Found at i:611987 original size:40 final size:39
Alignment explanation
Indices: 611938--612026 Score: 151
Period size: 40 Copynumber: 2.3 Consensus size: 39
611928 AACTAATCAA
* *
611938 ATTTTATTAATATTTTATTAAATTAAACTATTTTTATATT
1 ATTTTATTAATATTTTATTAAATTAAACT-CTTGTATATT
611978 ATTTTATTAATATTTTATTAAATTAAACTCTTGTATATT
1 ATTTTATTAATATTTTATTAAATTAAACTCTTGTATATT
612017 ATTTTATTAA
1 ATTTTATTAA
612027 GTTCATGATT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 18 0.38
40 29 0.62
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (39 bp):
ATTTTATTAATATTTTATTAAATTAAACTCTTGTATATT
Found at i:615128 original size:138 final size:138
Alignment explanation
Indices: 614880--615155 Score: 552
Period size: 138 Copynumber: 2.0 Consensus size: 138
614870 TGGGTAGCAA
614880 AAATAAAAAATTAATCTATGTTTGTAGGAAAAGGAGCATTGCTACAAGGCATGGGGAAAAAATTC
1 AAATAAAAAATTAATCTATGTTTGTAGGAAAAGGAGCATTGCTACAAGGCATGGGGAAAAAATTC
614945 AAACTCATGGTACCTTGATAGTGGATGCTCAAGACACATGACCGGAGACAAAAGCCGATTCATAG
66 AAACTCATGGTACCTTGATAGTGGATGCTCAAGACACATGACCGGAGACAAAAGCCGATTCATAG
615010 AGCTCAAC
131 AGCTCAAC
615018 AAATAAAAAATTAATCTATGTTTGTAGGAAAAGGAGCATTGCTACAAGGCATGGGGAAAAAATTC
1 AAATAAAAAATTAATCTATGTTTGTAGGAAAAGGAGCATTGCTACAAGGCATGGGGAAAAAATTC
615083 AAACTCATGGTACCTTGATAGTGGATGCTCAAGACACATGACCGGAGACAAAAGCCGATTCATAG
66 AAACTCATGGTACCTTGATAGTGGATGCTCAAGACACATGACCGGAGACAAAAGCCGATTCATAG
615148 AGCTCAAC
131 AGCTCAAC
615156 GCCAAAAATG
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 138 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.22
Consensus pattern (138 bp):
AAATAAAAAATTAATCTATGTTTGTAGGAAAAGGAGCATTGCTACAAGGCATGGGGAAAAAATTC
AAACTCATGGTACCTTGATAGTGGATGCTCAAGACACATGACCGGAGACAAAAGCCGATTCATAG
AGCTCAAC
Found at i:622270 original size:24 final size:24
Alignment explanation
Indices: 622238--622297 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
622228 TTCGTTTGCA
622238 TTTTT-TTTTTTGAAATTTTGGC-T
1 TTTTTGTTTTTTG-AATTTTGGCTT
**
622261 TTTTTGTTTTTTTGTTTTTTGGCTT
1 TTTTTG-TTTTTTGAATTTTGGCTT
622286 TTTTTGTTTTTT
1 TTTTTGTTTTTT
622298 TAAAAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 5 0.16
24 13 0.41
25 14 0.44
ACGTcount: A:0.05, C:0.03, G:0.13, T:0.78
Consensus pattern (24 bp):
TTTTTGTTTTTTGAATTTTGGCTT
Found at i:622273 original size:17 final size:18
Alignment explanation
Indices: 622253--622297 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
622243 TTTTTTGAAA
622253 TTTTGGCTTTTTT-G-TTT
1 TTTTGG-TTTTTTGGCTTT
622270 TTTT-GTTTTTTGGCTTT
1 TTTTGGTTTTTTGGCTTT
622287 TTTT-GTTTTTT
1 TTTTGGTTTTTT
622298 TAAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.23
16 2 0.08
17 18 0.69
ACGTcount: A:0.00, C:0.04, G:0.16, T:0.80
Consensus pattern (18 bp):
TTTTGGTTTTTTGGCTTT
Found at i:622295 original size:8 final size:8
Alignment explanation
Indices: 622260--622298 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
622250 AAATTTTGGC
622260 TTTTTTGT
1 TTTTTTGT
622268 TTTTTTGT
1 TTTTTTGT
*
622276 TTTTTGGCT
1 TTTTTTG-T
622285 TTTTTTGT
1 TTTTTTGT
622293 TTTTTT
1 TTTTTT
622299 AAAAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.85
Consensus pattern (8 bp):
TTTTTTGT
Found at i:624187 original size:20 final size:20
Alignment explanation
Indices: 624162--624199 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
624152 TTCCCTTTGA
*
624162 AGGGGAATCGATTCCCCCTT
1 AGGGGAATCGATACCCCCTT
624182 AGGGGAATCGATACCCCC
1 AGGGGAATCGATACCCCC
624200 CACGGGGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (20 bp):
AGGGGAATCGATACCCCCTT
Found at i:631660 original size:20 final size:20
Alignment explanation
Indices: 631635--631674 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
631625 GCGATACTGC
631635 AGCAATAGAGAGAAGGGCCT
1 AGCAATAGAGAGAAGGGCCT
631655 AGCAATAGAGAGAAGGGCCT
1 AGCAATAGAGAGAAGGGCCT
631675 GCTGGGGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.35, T:0.10
Consensus pattern (20 bp):
AGCAATAGAGAGAAGGGCCT
Found at i:634968 original size:26 final size:26
Alignment explanation
Indices: 634900--634968 Score: 61
Period size: 26 Copynumber: 2.6 Consensus size: 26
634890 TCTCTTTTAT
* *
634900 AAATGATCAAATTAACCTTAAACCCAA
1 AAATGGTCAAAATAA-CTTAAACCCAA
*
634927 AAATGG-CTAAAATAACTTGAACTCC-A
1 AAATGGTC-AAAATAACTTAAAC-CCAA
*
634953 AAATGGTCAAAGTAAC
1 AAATGGTCAAAATAAC
634969 CTCGAGTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
26 21 0.60
27 14 0.40
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (26 bp):
AAATGGTCAAAATAACTTAAACCCAA
Found at i:644295 original size:39 final size:38
Alignment explanation
Indices: 644187--644300 Score: 106
Period size: 39 Copynumber: 2.9 Consensus size: 38
644177 TTTTTATTTG
* *
644187 TAATTT-TCAAATAATTTCAATTTAACATTCAAAATTCT
1 TAATTTCTTAAAT-ATTTCAATTTAACATTCTAAATTCT
*** *
644225 TAATTTCTTAAAT-TTTACTACCATAACATTCTAAATTTT
1 TAATTTCTTAAATATTT-C-AATTTAACATTCTAAATTCT
* *
644264 TAATTTCTTAAACTATTTCATTTTAATATTCTAAATT
1 TAATTTCTTAAA-TATTTCAATTTAACATTCTAAATT
644301 ATTATTTAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
37 3 0.05
38 7 0.11
39 46 0.75
40 2 0.03
41 3 0.05
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (38 bp):
TAATTTCTTAAATATTTCAATTTAACATTCTAAATTCT
Found at i:644468 original size:2 final size:2
Alignment explanation
Indices: 644461--644509 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
644451 TTAGAATTTC
644461 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
644503 TA TA TA T
1 TA TA TA T
644510 TTTAAAAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:645792 original size:30 final size:29
Alignment explanation
Indices: 645755--646131 Score: 252
Period size: 30 Copynumber: 12.9 Consensus size: 29
645745 TTAATTTTAC
*
645755 ATCTTAACATTATAAATATATTTTATTTTT
1 ATCTTAAC-TTATAAATATATTTTATTCTT
* *
645785 ATATTAACTTATTAAATACATTTTATTCTT
1 ATCTTAACTTA-TAAATATATTTTATTCTT
* *
645815 GTATTAACCTTA-AAATATATTTTATTCTT
1 ATCTTAA-CTTATAAATATATTTTATTCTT
* * * *
645844 ATTTTAATTTAAAAATATATCTTAGTGT-TT
1 ATCTTAACTTATAAATATATTTTA-T-TCTT
*
645874 ATCTTAACTTAAAAAATATATTTTATTCTT
1 ATCTTAACTT-ATAAATATATTTTATTCTT
* * *
645904 ATCTTAACTTATTACATAAATTATATTCTT
1 ATCTTAACTTA-TAAATATATTTTATTCTT
* * * *
645934 AACTTAAATTATTAAGTATATTATATTCTT
1 ATCTTAACTTA-TAAATATATTTTATTCTT
* * * *
645964 ACCTTAAATTATTAAATATAATTAATTCTT
1 ATCTTAACTTA-TAAATATATTTTATTCTT
* * * *
645994 ATTTTAACTTAAAACATATCTTTTATTTTT
1 ATCTTAACTTATAA-ATATATTTTATTCTT
*
646024 ATCTTAACTTAAAAATATATTTTTATT-TT
1 ATCTTAACTTATAAATATA-TTTTATTCTT
* *
646053 AAC-T-AC--ATAAATATATTTT-TTTTT
1 ATCTTAACTTATAAATATATTTTATTCTT
* * * * *
646077 GTCTTAACTACAAAAAATATATTATATTTTT
1 ATCTTAACT--TATAAATATATTTTATTCTT
*
646108 ATCTTAAATT-TAAA-ATATTATTAT
1 ATCTTAACTTATAAATATATT-TTAT
646132 AATAAAGTAT
Statistics
Matches: 281, Mismatches: 47, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
23 2 0.01
24 7 0.02
25 9 0.03
26 2 0.01
27 7 0.02
28 10 0.04
29 47 0.17
30 167 0.59
31 30 0.11
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (29 bp):
ATCTTAACTTATAAATATATTTTATTCTT
Found at i:646047 original size:25 final size:25
Alignment explanation
Indices: 646017--646072 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
646007 ACATATCTTT
646017 TATTTTTATCTTAACTTA-A-AAATA
1 TATTTTTATCTTAAC-TACATAAATA
*
646041 TATTTTTATTTTAACTACATAAATA
1 TATTTTTATCTTAACTACATAAATA
646066 TATTTTT
1 TATTTTT
646073 TTTTGTCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 2 0.07
24 15 0.52
25 12 0.41
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTTTATCTTAACTACATAAATA
Found at i:646092 original size:54 final size:55
Alignment explanation
Indices: 645992--646099 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 55
645982 TAATTAATTC
* *
645992 TTATTTTAACTTAAAACATATCTTTTATTTTTATCTTAACT-TAAAAATATATTT
1 TTATTTTAACTTAAAACATATATTTTATTTTTATCTTAACTCAAAAAATATATTT
*
646046 TTATTTTAAC-TACATAA-ATATATTTT-TTTTTGTCTTAACTACAAAAAATATATT
1 TTATTTTAACTTA-A-AACATATATTTTATTTTTATCTTAACT-CAAAAAATATATT
646100 ATATTTTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
53 15 0.32
54 19 0.40
55 13 0.28
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (55 bp):
TTATTTTAACTTAAAACATATATTTTATTTTTATCTTAACTCAAAAAATATATTT
Found at i:646105 original size:54 final size:54
Alignment explanation
Indices: 645993--646115 Score: 128
Period size: 54 Copynumber: 2.3 Consensus size: 54
645983 AATTAATTCT
* * *
645993 TATTTTAACTTAAAACATATCTTTTATTTTTATCTTAACTTAAAAATATATTTT
1 TATTTTAACTTAAAACATATATTTTATTTTTATCTTAACTAAAAAATATATTTA
*
646047 TATTTTAAC-TACATAA-ATATATTTT-TTTTTGTCTTAACTACAAAAA-ATATATTA
1 TATTTTAACTTA-A-AACATATATTTTATTTTTATCTTAACTA-AAAAATATAT-TTA
*
646101 TATTTTTATCTTAAA
1 TA-TTTTAACTTAAA
646116 TTTAAAATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
53 19 0.33
54 28 0.48
55 9 0.16
56 2 0.03
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (54 bp):
TATTTTAACTTAAAACATATATTTTATTTTTATCTTAACTAAAAAATATATTTA
Found at i:646221 original size:30 final size:29
Alignment explanation
Indices: 646147--646257 Score: 111
Period size: 30 Copynumber: 3.8 Consensus size: 29
646137 AGTATAAATA
*
646147 TTTAAGTTAAGATAAGAAT-AAATTATATT
1 TTTAAATTAAGATAAGAATAAAATT-TATT
* *
646176 TTTAATTTAAGATAAGATTAAAATTTATT
1 TTTAAATTAAGATAAGAATAAAATTTATT
* *
646205 TTTAAAATTAAAATAAGAATAAAATATATT
1 TTT-AAATTAAGATAAGAATAAAATTTATT
* *
646235 TAATAACTTAAGATAA-AA-AAAAT
1 T-TTAAATTAAGATAAGAATAAAAT
646258 ATTGTTTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
28 5 0.07
29 26 0.37
30 38 0.54
31 1 0.01
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (29 bp):
TTTAAATTAAGATAAGAATAAAATTTATT
Found at i:646272 original size:59 final size:58
Alignment explanation
Indices: 646153--646266 Score: 135
Period size: 59 Copynumber: 2.0 Consensus size: 58
646143 AATATTTAAG
* * * * *
646153 TTAAGATAAGAATAAATTATATTTTTAATTTAAGATAAGATTAAAATTTATTTTTAAAA
1 TTAAAATAAGAATAAAATATATTTATAACTTAAGATAAGA-TAAAATATATTTTTAAAA
646212 TTAAAATAAGAATAAAATATATTTAATAACTTAAGATAA-A-AAAA-ATATTGTTTAA
1 TTAAAATAAGAATAAAATATATTT-ATAACTTAAGATAAGATAAAATATATT-TTTAA
646267 TAAATTTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
56 4 0.08
57 9 0.19
59 23 0.48
60 12 0.25
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (58 bp):
TTAAAATAAGAATAAAATATATTTATAACTTAAGATAAGATAAAATATATTTTTAAAA
Found at i:659863 original size:3 final size:3
Alignment explanation
Indices: 659855--659979 Score: 173
Period size: 3 Copynumber: 42.0 Consensus size: 3
659845 TTTATCCATT
* * *
659855 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
659903 TTA TTA TTAA TT- TTA TTA TTA CTA TTA TTA ATA TTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
659948 TT- TTA TTA TTA TTA TTA TTA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
659980 AATATATTAA
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
2 4 0.04
3 100 0.93
4 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:665964 original size:159 final size:161
Alignment explanation
Indices: 665676--665995 Score: 610
Period size: 159 Copynumber: 2.0 Consensus size: 161
665666 AGACATGTTT
665676 AAAAGGCAGGCTATCAGTGGAAAATGCATGAAATCCTGTATCTTTGACCAAGACCCCTGTATCCT
1 AAAAGGCAGGCTATCAGTGGAAAATGCATGAAATCCTGTATCTTTGACCAAGACCCCTGTATCCT
665741 TTAGGTTTCTCACCAGAATCAATTTATCACTCTGGTACTACCCCTATACAAATCAATGCTCGTAC
66 TTAGGTTTCTCACCAGAATCAATTTATCACTCTGGTACTACCCCTATACAAATCAATGCTCGTAC
665806 ATCTGCATTAC-A-AAGTCAAATC-CATGAA
131 ATCTGCATTACAAGAAGTCAAATCACATGAA
665834 AAAAGGCAGGCTATCAGTGGAAAATGCATGAAATCCTGTATCTTTGACCAAGAACCCCTGTATCC
1 AAAAGGCAGGCTATCAGTGGAAAATGCATGAAATCCTGTATCTTTGACCAAG-ACCCCTGTATCC
665899 TTTAGGTTTCTCACCAGAATCAATTTATCACTCTGGTACTACCCCTATACAAATCAATGCTCGTA
65 TTTAGGTTTCTCACCAGAATCAATTTATCACTCTGGTACTACCCCTATACAAATCAATGCTCGTA
665964 CATCTGCATTACAAGAAGTCAAATCACATGAA
130 CATCTGCATTACAAGAAGTCAAATCACATGAA
665996 GATCAACAAG
Statistics
Matches: 158, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
158 52 0.33
159 89 0.56
160 1 0.01
161 10 0.06
162 6 0.04
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (161 bp):
AAAAGGCAGGCTATCAGTGGAAAATGCATGAAATCCTGTATCTTTGACCAAGACCCCTGTATCCT
TTAGGTTTCTCACCAGAATCAATTTATCACTCTGGTACTACCCCTATACAAATCAATGCTCGTAC
ATCTGCATTACAAGAAGTCAAATCACATGAA
Found at i:670139 original size:167 final size:168
Alignment explanation
Indices: 669938--670273 Score: 608
Period size: 170 Copynumber: 2.0 Consensus size: 168
669928 TGCCATTTGG
669938 ATTGAAGAATGCAGGGCAACATATCAAAGAGCCATGGTAAC-TTTTTCATGACATGATGCACAAA
1 ATTGAAGAATGCAGGGCAACATATCAAAGAGCCATGGTAACTTTTTTCATGACATGATGCACAAA
670002 GAGA-TGAAGTATATGTAGATGACATGATTGCC-AATCCAGAACTGAAGAAGAACACATATTC-A
66 GAGATTGAAGTATATGTAGATGACATGATTGCCAAATCCAGAACTGAAGAAG-A-ACATATTCAA
670064 AATTTGAGGAAGCTTTTCCAGAGATTGAGGAAATATCAAT
129 AATTTGAGGAAGCTTTTCCAGAGATTGAGGAAATATCAAT
670104 ATTGAAGAATGCAGGGGCAACATATCAAAGAGCCATGGTAACTTTTTTTCATGACATGATGCACA
1 ATTGAAGAATGCA-GGGCAACATATCAAAGAGCCATGGTAAC-TTTTTTCATGACATGATGCACA
670169 AAGAGATTGAAGTATATGTAGATGACATGATTGCCAAATCCAGAACTGAAGAAGAACATATTCAA
64 AAGAGATTGAAGTATATGTAGATGACATGATTGCCAAATCCAGAACTGAAGAAGAACATATTCAA
670234 AATTTGAGGAAGCTTTTCCAGAGATTGAGGAAATATCAAT
129 AATTTGAGGAAGCTTTTCCAGAGATTGAGGAAATATCAAT
670274 TAAAGCTCAA
Statistics
Matches: 164, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
166 13 0.08
167 28 0.17
169 35 0.21
170 70 0.43
171 18 0.11
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (168 bp):
ATTGAAGAATGCAGGGCAACATATCAAAGAGCCATGGTAACTTTTTTCATGACATGATGCACAAA
GAGATTGAAGTATATGTAGATGACATGATTGCCAAATCCAGAACTGAAGAAGAACATATTCAAAA
TTTGAGGAAGCTTTTCCAGAGATTGAGGAAATATCAAT
Found at i:672821 original size:5 final size:5
Alignment explanation
Indices: 672811--672901 Score: 65
Period size: 4 Copynumber: 19.6 Consensus size: 5
672801 TGCTTGAAGA
*
672811 AAAAG AAAAG AAAA- AAAAA AGAAAG -AAAG -AAAG AAAA- AAAA- AAAAG
1 AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG AAAAG AAAAG
* * *
672857 AAAAAG AAAA- AAAA- AATAG AAATG -AAA- AAAAG AGAAG AAAAG AAA
1 -AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
672902 GGGGGTCAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
4 32 0.45
5 31 0.44
6 8 0.11
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:672846 original size:23 final size:22
Alignment explanation
Indices: 672812--672902 Score: 84
Period size: 19 Copynumber: 4.2 Consensus size: 22
672802 GCTTGAAGAA
672812 AAAGAAAAGAAAAAAAAAAGAAAG
1 AAAG-AAAGAAAAAAAAAA-AAAG
672836 AAAGAAAG-AAAAAAAAAAAAG
1 AAAGAAAGAAAAAAAAAAAAAG
*
672857 -AA-AAAG-AAAAAAAAAATAG
1 AAAGAAAGAAAAAAAAAAAAAG
* *
672876 AAATGAAA-AAAAGAGAAGAAAAG
1 AAA-GAAAGAAAA-AAAAAAAAAG
672899 AAAG
1 AAAG
672903 GGGGTCAAGG
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
19 16 0.28
20 4 0.07
21 4 0.07
22 16 0.28
23 14 0.24
24 4 0.07
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (22 bp):
AAAGAAAGAAAAAAAAAAAAAG
Found at i:672857 original size:36 final size:37
Alignment explanation
Indices: 672805--672901 Score: 121
Period size: 36 Copynumber: 2.6 Consensus size: 37
672795 ATATTATGCT
672805 TGAAGAAAAAGAAAAGAAAAA-AAAAAGAAAGAA-AGAAA
1 TGAA-AAAAAGAAAAGAAAAAGAAAAA-AAA-AATAGAAA
*
672843 -GAAAAAAAAAAAAGAAAAAGAAAAAAAAAATAGAAA
1 TGAAAAAAAGAAAAGAAAAAGAAAAAAAAAATAGAAA
*
672879 TGAAAAAAAGAGAAG-AAAAGAAA
1 TGAAAAAAAGAAAAGAAAAAGAAA
672902 GGGGGTCAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
35 2 0.04
36 31 0.58
37 20 0.38
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.03
Consensus pattern (37 bp):
TGAAAAAAAGAAAAGAAAAAGAAAAAAAAAATAGAAA
Found at i:672858 original size:13 final size:13
Alignment explanation
Indices: 672810--672889 Score: 72
Period size: 13 Copynumber: 5.9 Consensus size: 13
672800 ATGCTTGAAG
*
672810 AAAAAGAAAAGAAA
1 AAAAAAAAAAG-AA
672824 AAAAAAAGAAAGAA
1 AAAAAAA-AAAGAA
672838 AGAAAGAAAAAA-AA
1 A-AAA-AAAAAAGAA
*
672852 AAAAGAAAAAGAA
1 AAAAAAAAAAGAA
*
672865 AAAAAAAATAGAA
1 AAAAAAAAAAGAA
**
672878 ATGAAAAAAAGA
1 AAAAAAAAAAGA
672890 GAAGAAAAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
12 5 0.09
13 25 0.45
14 12 0.22
15 10 0.18
16 3 0.05
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:672887 original size:1 final size:1
Alignment explanation
Indices: 672810--672872 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
672800 ATGCTTGAAG
* * * * * * * *
672810 AAAAAGAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAAAAAAAAAAGAAAAAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
672873 TAGAAATGAA
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (1 bp):
A
Found at i:673991 original size:52 final size:52
Alignment explanation
Indices: 673840--674291 Score: 727
Period size: 52 Copynumber: 8.7 Consensus size: 52
673830 TATGTGCTCA
*
673840 ATAGCATCTTCTGGAAGTGTTC-TTGAGTTATCTAATCTGATTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
673891 ATAGCATCTTCTGGAAGTGTTC-TTGAGTTATCTGATCTGATTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
* *
673942 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
* *
673994 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
* *
674046 ATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTGGTT-GATCATAAC
1 ATAGCATCTTCTGGAAGTG-TTCTTTGAGTTATCTGATCTGATTGGA-CAGAAC
674099 ATAGCA--TTCTGGAAGTGTTCTTTG-GTTATCTGATCTGATTGGACAGAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
* *
674148 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
*
674200 ATAGCATCTTCTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATGGGACAGAAC
1 ATAGCATC-T-TCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
*
674254 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
674292 CGAAGAAGTG
Statistics
Matches: 379, Mismatches: 13, Indels: 17
0.93 0.03 0.04
Matches are distributed among these distances:
49 26 0.07
50 9 0.02
51 101 0.27
52 158 0.42
53 37 0.10
54 48 0.13
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (52 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAAC
Found at i:674165 original size:154 final size:154
Alignment explanation
Indices: 673840--674291 Score: 714
Period size: 154 Copynumber: 2.9 Consensus size: 154
673830 TATGTGCTCA
* *
673840 ATAGCATCTTCTGGAAGTGTTC-TTGAGTTATCTAATCTGATTGGACAGAACATAGCATCTTCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAGCATCTTCTG
673904 GAAGTGTTC-TTGAGTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTTG
66 GAAGTGTTCTTTGAGTTATCTGATCTGATT-GACAGAACATAGCA-CTTCTGGAAGTGTTCTTTG
*
673968 AGTTATCTGATCTGGTTGAACAGAAC
129 AGTTATCTGATCTGATTGAACAGAAC
*
673994 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGAACAGAACATAGCATCTTCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAGCATCTTCTG
* *
674059 GAAGTGTTTCTTTGAGTTATCTGATCTGGTTGATCATAACATAGCA-TTCTGGAAGTGTTCTTTG
66 GAAGTG-TTCTTTGAGTTATCTGATCTGATTGA-CAGAACATAGCACTTCTGGAAGTGTTCTTTG
*
674123 -GTTATCTGATCTGATTGGACAGAAC
129 AGTTATCTGATCTGATTGAACAGAAC
*
674148 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAATATAGCATCTTCTC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAGCATC-T-TC
*
674213 TGGAAGTGTTCTTTGAGTTATCTGATCTGATGGGACAGAACATAGCATCTTCTGGAAGTGTTCTT
64 TGGAAGTGTTCTTTGAGTTATCTGATCTGAT-TGACAGAACATAGCA-CTTCTGGAAGTGTTCTT
*
674278 TGAGTTATTTGATC
127 TGAGTTATCTGATC
674292 CGAAGAAGTG
Statistics
Matches: 275, Mismatches: 13, Indels: 16
0.90 0.04 0.05
Matches are distributed among these distances:
154 103 0.37
155 97 0.35
156 17 0.06
157 48 0.17
158 10 0.04
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (154 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACATAGCATCTTCTG
GAAGTGTTCTTTGAGTTATCTGATCTGATTGACAGAACATAGCACTTCTGGAAGTGTTCTTTGAG
TTATCTGATCTGATTGAACAGAAC
Found at i:674206 original size:206 final size:208
Alignment explanation
Indices: 673840--674291 Score: 745
Period size: 206 Copynumber: 2.2 Consensus size: 208
673830 TATGTGCTCA
*
673840 ATAGCATCTTCTGGAAGTGTTC-TTGAGTTATCTAATCTGATTGGACAGAACATAGCATCTTCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAACATAGCA-CTTCTG
673904 GAAGTGTTCTTGAGTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTTGA
65 GAAGTGTTCTTGAGTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTTGA
673969 GTTATCTGATCTGGTTGAACAGAACATAGCATC-T-TCTGGAAGTGTTCTTTGAGTTATCTGATC
130 GTTATCTGATCTGGTTGAACAGAACATAGCATCTTCTCTGGAAGTGTTCTTTGAGTTATCTGATC
* *
674032 TGGTTGAACAGAAC
195 TGATGGAACAGAAC
* *
674046 ATAGCATCTTCTGGAAGTGTTTCTTTGAGTTATCTGATCTGGTT-GATCATAACATAGCA-TTCT
1 ATAGCATCTTCTGGAAGTG-TTCTTTGAGTTATCTGATCTGATTGGA-CAGAACATAGCACTTCT
674109 GGAAGTGTTCTTTG-GTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTT
64 GGAAGTGTTC-TTGAGTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTT
* *
674173 GAGTTATCTGATCTGGTTGGACAGAATATAGCATCTTCTCTGGAAGTGTTCTTTGAGTTATCTGA
128 GAGTTATCTGATCTGGTTGAACAGAACATAGCATCTTCTCTGGAAGTGTTCTTTGAGTTATCTGA
*
674238 TCTGATGGGACAGAAC
193 TCTGATGGAACAGAAC
*
674254 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
674292 CGAAGAAGTG
Statistics
Matches: 231, Mismatches: 9, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
206 116 0.50
207 27 0.12
208 88 0.38
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (208 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAACATAGCACTTCTGG
AAGTGTTCTTGAGTTATCTGATCTGATTGGACAGAACATAGCATCTTCTGGAAGTGTTCTTTGAG
TTATCTGATCTGGTTGAACAGAACATAGCATCTTCTCTGGAAGTGTTCTTTGAGTTATCTGATCT
GATGGAACAGAAC
Found at i:675158 original size:113 final size:113
Alignment explanation
Indices: 674876--675479 Score: 919
Period size: 113 Copynumber: 5.3 Consensus size: 113
674866 ATTACCAGAG
* *
674876 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCACTTAATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
674941 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAA
66 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
674988 GAAG-TCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
675052 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
66 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
* * * *
675100 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATCCATCATTTGGTGGATCATCTT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
675165 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
66 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
* * * * * *
675213 GAAGTTCATAATGAGAAGAATTTGTTCAAAACCTTTTACCTGAATCCATCATTTGGTGGATCATC
1 GAAGTTCATAATGAGAAGAACTTGTTC--AACCTTTTGCTTGAATTCATCATTTGATGGATCAAC
*
675278 TTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGCAA
64 ATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---GAAGAAG--GAAG-AA
* * *
675334 GAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTTGATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
** *
675399 GGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTG-AGAAGGAAGAA
66 TTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATCTGAAGAAGGAAGAA
*
675447 GAAG-TCATAATGAGAAGAGCTTGTTCAACCTTT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
675480 GTTTGATATC
Statistics
Matches: 457, Mismatches: 24, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
111 97 0.21
112 43 0.09
113 136 0.30
114 4 0.01
115 71 0.16
116 5 0.01
117 1 0.00
118 7 0.02
119 43 0.09
120 22 0.05
121 28 0.06
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (113 bp):
GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
Found at i:675324 original size:224 final size:226
Alignment explanation
Indices: 674876--675474 Score: 884
Period size: 224 Copynumber: 2.6 Consensus size: 226
674866 ATTACCAGAG
* *
674876 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCACTTAATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
674941 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTCATAATGAGAAG
66 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTCATAATGAGAAG
* * *
675005 AACTTGTTC--AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTTCCAGAGAAAGTTCA
131 AACTTGTTCAAAACCTTTTACCTGAATCCATCATTTGATGGATCAACATTTCCAGAGAAAGTTCA
675068 TAATGAGAAGAACTCATCTGAAGAAGGAAG-AA
196 TAATGAGAAGAACTCATCT--AGAAGGAAGCAA
* * * *
675100 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATCCATCATTTGGTGGATCATCTT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
675165 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
66 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG-TCATAATGAGAA
* * * *
675230 GAATTTGTTCAAAACCTTTTACCTGAATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTC
130 GAACTTGTTCAAAACCTTTTACCTGAATCCATCATTTGATGGATCAACATTTCCAGAGAAAGTTC
675295 ATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGCAA
195 ATAATGAGAAGAACTCATCT-----AGAAG--GAAGCAA
* * *
675334 GAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTTGATGGATCAACAT
1 GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
** *
675399 GGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTG-AGAAGGAAGAAGAAGTCATAATGAGAA
66 TTCCAGAGAAAGTTCAT-AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTCATAATGAGAA
*
675463 GAGCTTGTTCAA
130 GAACTTGTTCAA
675475 CCTTTGTTTG
Statistics
Matches: 339, Mismatches: 25, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
224 98 0.29
225 12 0.04
226 21 0.06
228 67 0.20
231 7 0.02
233 26 0.08
234 89 0.26
235 19 0.06
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (226 bp):
GAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACAT
TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTCATAATGAGAAG
AACTTGTTCAAAACCTTTTACCTGAATCCATCATTTGATGGATCAACATTTCCAGAGAAAGTTCA
TAATGAGAAGAACTCATCTAGAAGGAAGCAA
Found at i:675448 original size:22 final size:23
Alignment explanation
Indices: 675421--675463 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
675411 TTCATGAATG
*
675421 AGAAGAACTCAT-CTGAGAAGGA
1 AGAAGAACTCATAATGAGAAGGA
*
675443 AGAAGAAGTCATAATGAGAAG
1 AGAAGAACTCATAATGAGAAG
675464 AGCTTGTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.49, C:0.09, G:0.28, T:0.14
Consensus pattern (23 bp):
AGAAGAACTCATAATGAGAAGGA
Found at i:675552 original size:60 final size:59
Alignment explanation
Indices: 675429--675552 Score: 171
Period size: 60 Copynumber: 2.1 Consensus size: 59
675419 TGAGAAGAAC
* **
675429 TCATCTGAGAAGGAAGAAGAAGTCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATA
1 TCATCTGAGAAGGAAGAAGAAGTCATAATGAGAAGAACTTGTTCAACCTTTGTTAAATA
*
675488 TCATCTGAAGAAGG-AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTAAAT-
1 TCATCTG-AGAAGGAAGAAGAAG-TCATAATGAGAAGAACTTGTTCAAC-CTTTGTTAAATA
675548 TCATC
1 TCATC
675553 ATTTGATGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
59 15 0.26
60 35 0.60
61 8 0.14
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (59 bp):
TCATCTGAGAAGGAAGAAGAAGTCATAATGAGAAGAACTTGTTCAACCTTTGTTAAATA
Found at i:675602 original size:171 final size:174
Alignment explanation
Indices: 675321--675700 Score: 705
Period size: 173 Copynumber: 2.2 Consensus size: 174
675311 ATCTGAAGAA
675321 GAAGAAGAAGCAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTT
1 GAAGAAGAAG-AAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTT
675386 GATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTG-AGAAGGAAGAAGAA
65 GATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA
675450 G-TCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATATCATCT
130 GTTCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATATCATCT
*
675494 GAAGAAGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTG-TTAAATTCATCATTTG
1 GAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTTG
675558 ATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
66 ATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
675623 TTCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATATCATCT
131 TTCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATATCATCT
675667 GAAGAAGAAG-AGAAAGTTCATAATGAGAAGAACT
1 GAAGAAGAAGAAG-AAGTTCATAATGAGAAGAACT
675701 CATCAAGAGT
Statistics
Matches: 202, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
171 65 0.32
172 55 0.27
173 82 0.41
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (174 bp):
GAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTTG
ATGGATCAACATGGCCAAAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
TTCATAATGAGAAGAGCTTGTTCAACCTTTGTTTGATATCATCT
Found at i:675953 original size:3 final size:3
Alignment explanation
Indices: 675945--676055 Score: 140
Period size: 3 Copynumber: 37.7 Consensus size: 3
675935 TATCCATTTA
* *
675945 TAT TAT TAT TAT TA- TAT TAT TAT TAT CAT TAT TAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
675992 TATT TAT TAT TAC TAT TAT TAA TAT TAT TAT TAT TAT T-T T-T TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
676036 TAT TAT TAAT T-T TAT TAT TA
1 TAT TAT T-AT TAT TAT TAT TA
676056 AATATATTAA
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
2 8 0.08
3 81 0.85
4 6 0.06
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:676010 original size:34 final size:33
Alignment explanation
Indices: 675944--676055 Score: 165
Period size: 34 Copynumber: 3.4 Consensus size: 33
675934 TTATCCATTT
675944 ATATTATTATTATTATATTATTATTATCATTATTA
1 ATATTATTATTATTAT-TTATTATTAT-ATTATTA
675979 ATATTATTATTATTATTTATTATTACTATTATTA
1 ATATTATTATTATTATTTATTATTA-TATTATTA
*
676013 ATATTATTATTATTATTTTTTA-T-TATTATTA
1 ATATTATTATTATTATTTATTATTATATTATTA
*
676044 ATTTTATTATTA
1 ATATTATTATTA
676056 AATATATTAA
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
31 19 0.26
33 1 0.01
34 37 0.50
35 17 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (33 bp):
ATATTATTATTATTATTTATTATTATATTATTA
Found at i:682968 original size:164 final size:165
Alignment explanation
Indices: 682736--684075 Score: 1408
Period size: 164 Copynumber: 8.1 Consensus size: 165
682726 ATTTAGTTTG
* *
682736 CCTCTGAA-CTGAGTGTAATCAAACTCGAAGGTCTTCGATTGGCAGATAGCCCTTCTCGACTTAA
1 CCTC-GAAGCTGAGTGTAATCGAACTCGAGGGTC-T---TTGGCAGATAGCCCTTCTCGACTTAA
* * * *
682800 GCTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAATGTCTTTGG-TGACAG
61 GCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAA
* * * *
682864 ATAACCATTCTAG-CATTGAGTTATGCTGTAAATGATGTGC
126 ATAACCCTTCTCGAC-TTAAGTTATGCTGCAAATGATGTGC
* * * * *
682904 CCTCGAAGTTGAGTGTAATCAAACTCGAGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTAT
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* * * ** * *
682969 ATTGCAAATAATATGCCTTGGAGCTGAGCAAAGTTGAACTCAAAGGTCTTTGGTTGGCAAATAAC
66 ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAAATAAC
683034 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
131 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
*
683069 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* * * * *
683134 ACTGCAAATGATGTGCATTAGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGG-TGACAGATAAC
66 ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAAATAAC
* * * * *
683198 CATTCTAG-CATTGAGTTATACTGTAAATGATGTGC
131 CCTTCTCGAC-TTAAGTTATGCTGCAAATGATGTGC
* * *
683233 CCTCGAAGTTGAGTGTAATCGAACTCGAGGGTCTTTGGTAGATAACCCTTCTCGACTTAAGCTAT
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* * *
683298 ACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAAC
66 ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAAATAAC
* *
683363 CCTTCTCGACTTAAGTTATGTTGCAAATGATGTTC
131 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* *
683398 CCTCGAAGCTGAGTGTAATTGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAATCTAT
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* *
683463 ATTGCAAATGATGTGCCTTGGAGCTGAG-ATAGTCGAACTCAAAGGTCTTTGGTTGGA-AAATAA
66 ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTT-GACAAATAA
*
683526 CCCTTCTCGACTTAAGTTATGCTGCAAATAATGTGC
130 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* *
683562 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCTTTCTCAACTTAAGCTAT
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
* * ** ** *
683627 ACTGCAAATGATGTGCCTTGGAGATGAGCGTAGTCGAACTCGACTGTCTTT-GTTGGTAGATAAC
66 ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAAATAAC
*
683691 CCTTCTCGACTTAAGTTATGCTGCAAATGATATG-
131 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* * * * * * * * * *
683725 CCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAG
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC-TTTGG---CAGATAGCCCTTCTCGACTTAAG
* * *** * * * * * *
683790 TTATGA-TGTAAATGATGTGCCCTCAAACCTGAGTGTAATCAAACTCGAGGGTCTTT-G--G-CA
62 CTAT-ACTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACA
* * * *
683850 GATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATAT-T
125 AATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* * * * * * * * *
683890 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
1 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC-TTTGG---CAGATAGCCCTTCTCGACTTAAG
* * * * * * * * *
683955 TTATGCTGCAAATGATGCGCCCTCGAAGCTGAGTGTA-TCGAACTCGAGGGTCTTT-G--G-CAG
62 CTATACTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAA
* * * *
684015 ATAGCCCTTCTCGACTTAAGCTATGCTGAAAATTATGTG-
126 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
* * *
684054 CCTTGAAGCTGAGCGTAGTCGA
1 CCTCGAAGCTGAGTGTAATCGA
684076 CTAAAGGTCT
Statistics
Matches: 1026, Mismatches: 128, Indels: 40
0.86 0.11 0.03
Matches are distributed among these distances:
163 29 0.03
164 491 0.48
165 412 0.40
166 3 0.00
167 36 0.04
168 55 0.05
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (165 bp):
CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTAT
ACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGACAAATAAC
CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGC
Found at i:683164 original size:329 final size:330
Alignment explanation
Indices: 682736--683763 Score: 1532
Period size: 329 Copynumber: 3.1 Consensus size: 330
682726 ATTTAGTTTG
*
682736 CCTCTGAA-CTGAGTGTAATCAAACTCGAAGGTCTTCGATTGGCAGATAGCCCTTCTCGACTTAA
1 CCTC-GAAGCTGAGTGTAATCGAACTCGAAGGTCTT---TTGGCAGATAGCCCTTCTCGACTTAA
*
682800 GCTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGA
62 GCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGA
*
682865 TAACCATTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCAAACTC
127 TAACCATTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTC
*
682930 GAGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAGCTG
192 GAGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTG
** *
682995 AGCAAAGTTGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAA
257 AGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAA
683060 ATGATGTGC
322 ATGATGTGC
*
683069 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGT-TTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
* *
683133 TACTGCAAATGATGTGCATTAGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGATAAC
66 TACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGATAAC
*
683198 CATTCTAGCATTGAGTTATACTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCGAGG
131 CATTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCGAGG
*
683263 GTCTTTGGTAGATAACCCTTCTCGACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGAGCG
196 GTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGAGCG
*
683328 TAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGTTGCAAATGA
261 TAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA
*
683393 TGTTC
326 TGTGC
* * *
683398 CCTCGAAGCTGAGTGTAATTGAACTCGAGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAATCTA
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
* * * * *
683462 TATTGCAAATGATGTGCCTTGGAGCTGAG-ATAGTCGAACTCAAAGGTCTTTGGTTGGA-AAATA
66 TACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGG-T-GACAGATA
* * * * * *
683525 ACCCTTCTCG-ACTTAAGTTATGCTGCAAATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
129 ACCATTCTAGCA-TTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCG
* * * * * *
683589 AGGGTCTTTGGCAGATAGCCTTTCTCAACTTAAGCTATACTGCAAATGATGTGCCTTGGAGATGA
193 AGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGA
* ** * *
683654 GCGTAGTCGAACTCGACTGTCTTT-GTTGGTAGATAACCCTTCTCGACTTAAGTTATGCTGCAAA
258 GCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAA
*
683718 TGATATG-
323 TGATGTGC
* * * * *
683725 CCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGG
1 CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGG
683764 TTACAGATAA
Statistics
Matches: 637, Mismatches: 52, Indels: 17
0.90 0.07 0.02
Matches are distributed among these distances:
327 26 0.04
328 69 0.11
329 509 0.80
330 2 0.00
332 5 0.01
333 26 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (330 bp):
CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
TACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGATAAC
CATTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCGAGG
GTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGAGCG
TAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA
TGTGC
Found at i:683721 original size:493 final size:493
Alignment explanation
Indices: 682734--683780 Score: 1492
Period size: 493 Copynumber: 2.1 Consensus size: 493
682724 AAATTTAGTT
* * *
682734 TGCCTCTGAA-CTGAGTGTAATCAAACTCGAAGGTCTTCGATTGGCAGATAGCCCTTCTCGACTT
1 TGCCTC-GAAGCTGAGTGTAATCGAACTCGAAGGTCTT---TTGGTAGATAACCCTTCTCGACTT
* * * * *
682798 AAGCTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACA
62 AAGCTATACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACA
* * * *
682863 GATAACCATTCTAGCATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCAAAC
127 AATAACCATTCTAGCATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAAC
*
682928 TCGAGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAGC
192 TCGAGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAGC
* *
682993 TGAGCAAAGTTGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGC
257 TGAGCAAAGTCGAACTCAAAGGTCTTTGGTTGGAAAATAACCCTTCTCGACTTAAGTTATGCTGC
* * *
683058 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAGCCCTTCTCG
322 AAATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCA
*
683123 ACTTAAGCTATACTGCAAATGATGTGCATTAGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGT
387 ACTTAAGCTATACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGGT
* * *
683188 GACAGATAACCATTCTAGCATTGAGTTATACTGTAAATGATG
452 GACAGATAACCATTCTAGCATTAAGTTATACTGCAAATGATA
* *
683230 TGCCCTCGAAGTTGAGTGTAATCGAACTCGAGGGTC-TTTGGTAGATAACCCTTCTCGACTTAAG
1 TG-CCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGTAGATAACCCTTCTCGACTTAAG
*
683294 CTATACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAA
65 CTATACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGG-TGACAAA
* * * * **
683359 TAACCCTTCTCG-ACTTAAGTTATGTTGCAAATGATGTTCCCTCGAAGCTGAGTGTAATTGAACT
129 TAACCATTCTAGCA-TTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACT
* * * * *
683423 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAATCTATATTGCAAATGATGTGCCTTGGAGCT
193 CGAGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAGCT
*
683488 GAG-ATAGTCGAACTCAAAGGTCTTTGGTTGGAAAATAACCCTTCTCGACTTAAGTTATGCTGCA
258 GAGCAAAGTCGAACTCAAAGGTCTTTGGTTGGAAAATAACCCTTCTCGACTTAAGTTATGCTGCA
*
683552 AATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCTTTCTCAA
323 AATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCAA
* * * *
683617 CTTAAGCTATACTGCAAATGATGTGCCTTGGAGATGAGCGTAGTCGAACTCGACTGTCTTTGTTG
388 CTTAAGCTATACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGGTG
** * * *
683682 GTAGATAACCCTTCTCG-ACTTAAGTTATGCTGCAAATGATA
453 ACAGATAACCATTCTAGCA-TTAAGTTATACTGCAAATGATA
* * * * *
683723 TGCCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCT
1 TGCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGG-T--AGATAACCCTTCT
683781 AGCCTTGAGT
Statistics
Matches: 488, Mismatches: 54, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
492 27 0.06
493 295 0.60
494 121 0.25
496 19 0.04
497 26 0.05
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (493 bp):
TGCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGTAGATAACCCTTCTCGACTTAAGC
TATACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTGACAAATA
ACCATTCTAGCATTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGA
GGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAGCTGAG
CAAAGTCGAACTCAAAGGTCTTTGGTTGGAAAATAACCCTTCTCGACTTAAGTTATGCTGCAAAT
AATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCAACTT
AAGCTATACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGGTGACA
GATAACCATTCTAGCATTAAGTTATACTGCAAATGATA
Found at i:683857 original size:329 final size:324
Alignment explanation
Indices: 682734--684129 Score: 1391
Period size: 329 Copynumber: 4.2 Consensus size: 324
682724 AAATTTAGTT
* * * *
682734 TGCCTCTGAA-CTGAGTGTAATCAAACTCGAAGGTCTTCGATTGGCAGATAGCCCTTCTCGACTT
1 TGCCTC-GAAGCTGAGCGTAATCGAACTCGAAGGTC-T---TTGGCAGATAACCCTTCTAGACTT
* * * * *
682798 AAGCTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACA
61 GAGTTATACTGCAAATGATGTGCCTTAGAGCTGAG-GTAGTCGAACTCGAAGGTCTTT-G-G-CA
* * * * * *
682863 GATAACCATTCTAG-CATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCAAA
122 GATAACCCTTCTCGAC-TTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAA
* *
682927 CTCGAGGGTCTTTGGTAGATAACCCTTCTCAACTTAAGCTATATTGCAAATAATATGCCTTGGAG
186 CTCGAGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAG
** *
682992 CTGAGCAAAGTTGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTG
251 CTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTG
683057 CAAATGATG
316 CAAATGATG
* * * * * * *
683066 TGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTTTTTGGCAGATAGCCCTTCTCGACTTAAGC
1 TG-CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTGAGT
* *
683131 TATACTGCAAATGATGTGCATTAGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGATA
65 TATACTGCAAATGATGTGCCTTAGAGCTGAG-GTAGTCGAACTCGAAGGTCTTT-G-G-CAGATA
* * * * * *
683196 ACCATTCTAG-CATTGAGTTATACTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCG
126 ACCCTTCTCGAC-TTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
* *
683260 AGGGTCTTTGGTAGATAACCCTTCTCGACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGA
190 AGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGA
*
683325 GCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGTTGCAAA
255 GCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAA
683390 TGATG
320 TGATG
* * * * * * *
683395 TTCCCTCGAAGCTGAGTGTAATTGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTT-AAT
1 -TGCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTGAGT
* * * * * *
683459 CTATATTGCAAATGATGTGCCTTGGAGCTGAGATAGTCGAACTCAAAGGTCTTTGGTTGGAAAAT
65 -TATACTGCAAATGATGTGCCTTAGAGCTGAGGTAGTCGAACTCGAAGGTC--T--TTGGCAGAT
*
683524 AACCCTTCTCGACTTAAGTTATGCTGCAAATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
125 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
* * * * *
683589 AGGGTCTTTGGCAGATAGCCTTTCTCAACTTAAGCTATACTGCAAATGATGTGCCTTGGAGATGA
190 AGGGTCTTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGA
* ** * *
683654 GCGTAGTCGAACTCGACTGTCTTT-GTTGGTAGATAACCCTTCTCGACTTAAGTTATGCTGCAAA
255 GCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAA
*
683718 TGATA
320 TGATG
* * * * *
683723 TGCCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTG
1 TGCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TTTGG---CAGATAACCCTTCTAGACTTG
* * * * * * *
683788 AGTTATGA-TGTAAATGATGTGCCCTCAAACCTGAGTGTAATCAAACTCGAGGGTCTTTGGCAGA
62 AGTTAT-ACTGCAAATGATGTG-CCTTAGAGCTGAG-GTAGTCGAACTCGAAGGTCTTTGGCAGA
* * * * * * *
683852 TAACCCTTCTCGACTTAAGCTATGCTGCAAATGATAT-TCCTTGGAGCTGAGCGTAGTCGAACTC
124 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* * * * * * ** *
683916 GAAGGTCTTTTGGTCACAGATAACCCTTCT-AGCCTTGAGTTATGCTGCAAATGATGCGCCCTCG
189 GAGGGTC-TTTGG---CAGATAACCCTTCTCA-ACTTAAGCTATACTGCAAATAATATG-CCTTG
* * * * * * *
683980 AAGCTGAGTGTA-TCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATG
248 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATG
* *
684040 CTGAAAATTATG
313 CTGCAAATGATG
* * * * *
684052 TGCCTTGAAGCTGAGCGTAGTCG-ACT-AAAGGTCTTTGTTGGCATATAACCCTTCTAGCCTTGA
1 TGCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T-TTGGCAGATAACCCTTCTAGACTTGA
*
684115 GTCATACTGCAAATG
63 GTTATACTGCAAATG
684130 TTGTCTTAAA
Statistics
Matches: 933, Mismatches: 105, Indels: 58
0.85 0.10 0.05
Matches are distributed among these distances:
325 1 0.00
326 32 0.03
327 33 0.04
328 96 0.10
329 612 0.66
330 5 0.01
331 35 0.04
332 66 0.07
333 53 0.06
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (324 bp):
TGCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTAGACTTGAGTT
ATACTGCAAATGATGTGCCTTAGAGCTGAGGTAGTCGAACTCGAAGGTCTTTGGCAGATAACCCT
TCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC
TTTGGCAGATAACCCTTCTCAACTTAAGCTATACTGCAAATAATATGCCTTGGAGCTGAGCGTAG
TCGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATG
Found at i:683882 original size:165 final size:164
Alignment explanation
Indices: 683679--684129 Score: 660
Period size: 165 Copynumber: 2.8 Consensus size: 164
683669 ACTGTCTTTG
* *
683679 TTGGTAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* *
683744 CGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGATGTAAATGATGTG
66 CGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGATGCAAATGATGCG
683809 CCCTCAAACCTGAGTGTAATCAAACTCGAGGGTCT
131 CCCTCAAACCTGAGTGT-ATCAAACTCGAGGGTCT
*
683844 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATTCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * *
683909 CGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGCG
66 CGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGATGCAAATGATGCG
* * *
683974 CCCTCGAAGCTGAGTGTATCGAACTCGAGGGTCT
131 CCCTCAAACCTGAGTGTATCAAACTCGAGGGTCT
* * * * *
684008 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGAAAATTATGTGCCTTGAAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * *
684073 CG-AC-TAAAGGTC-TTT-GTTGGCATATAACCCTTCTAGCCTTGAGTCAT-ACTGCAAATG
66 CGAACTTGAAGGTCTTTTGGTT-ACAGATAACCCTTCTAGCCTTGAGTTATGA-TGCAAATG
684130 TTGTCTTAAA
Statistics
Matches: 260, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
160 2 0.01
161 36 0.14
162 6 0.02
163 2 0.01
164 77 0.30
165 137 0.53
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (164 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
CGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGATGCAAATGATGCG
CCCTCAAACCTGAGTGTATCAAACTCGAGGGTCT
Found at i:684124 original size:493 final size:490
Alignment explanation
Indices: 682736--684129 Score: 1280
Period size: 493 Copynumber: 2.8 Consensus size: 490
682726 ATTTAGTTTG
* * * * *
682736 CCTCTGAA-CTGAGTGTAATCAAACTCGAAGGTCTTCGATTGGCAGATAGCCCTTCTCGACTTAA
1 CCTC-GAAGCTGAGCGTAATCGAACTCGAAGGTC-T---TTGGTAGATAACCCTTCTAGACTTAA
* * *** ** * * * * * * *
682800 GCTATACTGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGA
61 GCTATACTGCAAATAATATGCCTCAAACCTGAGCGTAATCAAACTCAAAGGTC-TTGTTGGCAAA
* * * * * * * * * *
682865 TAACCATTCTAG-CATTGAGTTATGCTGTAAATGATGTGCCCTCGAAGTTGAGTGTAATCAAACT
125 TAACCCTTCTCGAC-TTAAGCTATGCTGCAAATGATATTCCCTCGAAGCTGAGCGTAATCGAACT
* * * * * ** * *
682929 CGAGGGTCTTTGGTAGATAACCCTTCTCA-ACTTAAGCTATATTGCAAATAATATGCCTTGGAGC
189 CGAAGGTCTTTGGCAGATAACCCTTCT-AGACTTAATCTATACTGCAAATGATGCGCCTCGAAGC
* *
682993 TGAGCAAAGTTGAACTCAAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGC
253 TGAG-ATAGTCGAACTCAAAGGTC-TT-GTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGC
* ** * *
683058 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGG-GTTTTTGGCAGATAGCCCTTCTC
315 AAATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTAAAGGTCTTTTTGGCAGATAGCCCTTCTA
*
683122 GACTTAAGCTATACTGCAAATGATGTGCATTAGAGCTGAGCGTAGTCGAACTCGAATGTCTTTGG
380 GACTTAAGCTATACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGG
* * *
683187 TGACAGATAACCATTCTAGCATTGAGTTATACTGTAAATGATGTGC
445 TGACAGATAACCATTCTAGCATTAAGTTATACTGCAAATGATATGC
* * * *
683233 CCTCGAAGTTGAGTGTAATCGAACTCGAGGGTCTTTGGTAGATAACCCTTCTCGACTTAAGCTAT
1 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGTAGATAACCCTTCTAGACTTAAGCTAT
*** * * *
683298 ACTGCAAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAAATAAC
66 ACTGCAAATAATATGCCTCAAACCTGAGCGTAATCAAACTCAAAGGTC-TT-GTTGGCAAATAAC
* * * * * *
683363 CCTTCTCGACTTAAGTTATGTTGCAAATGATGTTCCCTCGAAGCTGAGTGTAATTGAACTCGAGG
129 CCTTCTCGACTTAAGCTATGCTGCAAATGATATTCCCTCGAAGCTGAGCGTAATCGAACTCGAAG
* * * * * *
683428 GTCTTTGGCAGATAGCCCTTCTCGACTTAATCTATATTGCAAATGATGTGCCTTGGAGCTGAGAT
194 GTCTTTGGCAGATAACCCTTCTAGACTTAATCTATACTGCAAATGATGCGCCTCGAAGCTGAGAT
*
683493 AGTCGAACTCAAAGGTCTTTGGTTGGAAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATAAT
259 AGTCGAACTCAAAGGTC-TT-GTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATAAT
* * *
683558 GTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC--TTTGGCAGATAGCCTTTCTCA-ACTT
322 GTGCCCTCGAAGCTGAGTGTAATCGAACT-AAAGGTCTTTTTGGCAGATAGCCCTTCT-AGACTT
* * * * **
683620 AAGCTATACTGCAAATGATGTGCCTTGGAGATGAGCGTAGTCGAACTCGACTGTCTTTGTTGGTA
385 AAGCTATACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGGTGACA
* * *
683685 GATAACCCTTCTCG-ACTTAAGTTATGCTGCAAATGATATG-
450 GATAACCATTCTAGCA-TTAAGTTATACTGCAAATGATATGC
* * * * * *
683725 CCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAG
1 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TTTGG-T--AGATAACCCTTCTAGACTTAAG
* * * * * * * *
683790 TTATGA-TGTAAATGATGTGCCCTCAAACCTGAGTGTAATCAAACTCGAGGGTC-T-TTGGCAGA
62 CTAT-ACTGCAAATAATATG-CCTCAAACCTGAGCGTAATCAAACTCAAAGGTCTTGTTGGCAAA
* * *
683852 TAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATT-CCTTGGAGCTGAGCGTAGTCGAACTC
125 TAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATTCCCTCGAAGCTGAGCGTAATCGAACTC
* * *
683916 GAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGT-TATGCTGCAAATGATGCGCCCTCG
190 GAAGGTC-TTTGG---CAGATAACCCTTCTAGACTT-AATCTATACTGCAAATGATGCG-CCTCG
* * * * * *
683980 AAGCTGAGTGTA-TCGAACTCGAGGGTC-T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
249 AAGCTGAG-ATAGTCGAACTCAAAGGTCTTGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCT
* * * * * * *
684042 GAAAATTATGTG-CCTTGAAGCTGAGCGTAGTCG-ACTAAAGGTCTTTGTTGGCATATAACCCTT
313 GCAAATAATGTGCCCTCGAAGCTGAGTGTAATCGAACTAAAGGTCTTT-TTGGCAGATAGCCCTT
* *
684105 CTAGCCTTGAG-TCATACTGCAAATG
377 CTAGACTTAAGCT-ATACTGCAAATG
684130 TTGTCTTAAA
Statistics
Matches: 759, Mismatches: 112, Indels: 56
0.82 0.12 0.06
Matches are distributed among these distances:
490 5 0.01
491 3 0.00
492 75 0.10
493 403 0.53
494 123 0.16
495 3 0.00
496 68 0.09
497 77 0.10
498 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (490 bp):
CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGTAGATAACCCTTCTAGACTTAAGCTAT
ACTGCAAATAATATGCCTCAAACCTGAGCGTAATCAAACTCAAAGGTCTTGTTGGCAAATAACCC
TTCTCGACTTAAGCTATGCTGCAAATGATATTCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGT
CTTTGGCAGATAACCCTTCTAGACTTAATCTATACTGCAAATGATGCGCCTCGAAGCTGAGATAG
TCGAACTCAAAGGTCTTGTTGGCAAATAACCCTTCTCGACTTAAGTTATGCTGCAAATAATGTGC
CCTCGAAGCTGAGTGTAATCGAACTAAAGGTCTTTTTGGCAGATAGCCCTTCTAGACTTAAGCTA
TACTGCAAATGATGTGCATTAGAGATGAGCGTAGTCGAACTCGAATGTCTTTGGTGACAGATAAC
CATTCTAGCATTAAGTTATACTGCAAATGATATGC
Found at i:690219 original size:2 final size:2
Alignment explanation
Indices: 690214--690246 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
690204 CCATATATGT
690214 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
690247 TCTGTGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:693105 original size:2 final size:2
Alignment explanation
Indices: 693094--693127 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
693084 CGTTTTACAC
*
693094 AT AT -T AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
693128 ATAAATTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:693596 original size:21 final size:21
Alignment explanation
Indices: 693479--693616 Score: 59
Period size: 21 Copynumber: 6.7 Consensus size: 21
693469 ACGCGAAATA
**
693479 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
693499 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
*
693519 AAAATCGCAACGCGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* * ** *
693540 AAAATCGCGATGCGATAGTAC
1 AAAATCGCAACGCGATTTTCC
* * **
693561 ATATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
* * * *
693582 ATAATCGCAACGCGAATAT-G
1 AAAATCGCAACGCGATTTTCC
693602 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
693617 ACACATAAAT
Statistics
Matches: 85, Mismatches: 29, Indels: 8
0.70 0.24 0.07
Matches are distributed among these distances:
19 1 0.01
20 38 0.45
21 44 0.52
22 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:693678 original size:20 final size:20
Alignment explanation
Indices: 693584--693952 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
693574 GATTTTCCAT
* ** *
693584 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
693604 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
693624 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
693644 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
693664 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
693684 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
693704 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
693724 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
693744 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
693764 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
693784 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
693804 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
693824 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
693844 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
693864 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
693884 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
693904 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
693924 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
693944 AATCACAAC
1 AATCGCAAC
693953 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:694646 original size:24 final size:24
Alignment explanation
Indices: 694614--694668 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
694604 GTGAGTACTA
* * *
694614 GTCAGTATTCGAAATTTGGTCTTG
1 GTCAATATTCGAAATTTGATATTG
* *
694638 GTCAATATTCGGACTTTGATATTG
1 GTCAATATTCGAAATTTGATATTG
694662 GTCAATA
1 GTCAATA
694669 CACGGATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (24 bp):
GTCAATATTCGAAATTTGATATTG
Found at i:694674 original size:24 final size:24
Alignment explanation
Indices: 694635--694681 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
694625 AAATTTGGTC
**
694635 TTGGTCAATATTCGGACTTTGATA
1 TTGGTCAATACACGGACTTTGATA
*
694659 TTGGTCAATACACGGATTTTGAT
1 TTGGTCAATACACGGACTTTGAT
694682 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (24 bp):
TTGGTCAATACACGGACTTTGATA
Found at i:697183 original size:19 final size:19
Alignment explanation
Indices: 697161--697465 Score: 358
Period size: 19 Copynumber: 17.4 Consensus size: 19
697151 CGGAAAATAC
*
697161 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
697180 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
697194 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
697214 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
697228 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
697246 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
697265 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
697279 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
697298 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
697317 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
697331 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
697350 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
697369 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
697387 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
697406 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
697420 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
697439 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
697458 AATCGCAA
1 AATCGCAA
697466 CGAGATAATC
Statistics
Matches: 248, Mismatches: 10, Indels: 56
0.79 0.03 0.18
Matches are distributed among these distances:
14 48 0.19
15 2 0.01
16 16 0.06
17 14 0.06
18 38 0.15
19 117 0.47
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:697233 original size:14 final size:15
Alignment explanation
Indices: 697214--697291 Score: 52
Period size: 14 Copynumber: 4.8 Consensus size: 15
697204 CGGAAATGAA
697214 AATCGCAA-CGAGAG
1 AATCGCAAGCGAGAG
*
697228 AATCGCAATGCGAAATG
1 AATCGCAA-GCGAGA-G
*
697245 AAATCGCAATGCGAAATGAA
1 -AATCGCAA-GCG--A-GAG
697265 AATCGCAA-CGAGAG
1 AATCGCAAGCGAGAG
697279 AATCGCAATGCGA
1 AATCGCAA-GCGA
697292 AATGAAAATC
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
14 18 0.35
15 1 0.02
16 7 0.14
17 3 0.06
18 12 0.24
19 8 0.16
20 1 0.02
21 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (15 bp):
AATCGCAAGCGAGAG
Found at i:697286 original size:33 final size:33
Alignment explanation
Indices: 697228--697446 Score: 214
Period size: 33 Copynumber: 6.2 Consensus size: 33
697218 GCAACGAGAG
697228 AATCGCAATGCGAAATGAAATCGCAATGCGAAATGAA
1 AATCGCAA--CGAAA-G-AATCGCAATGCGAAATGAA
*
697265 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAAAGAATCGCAATGCGAAATGAA
*
697298 AATCGCAATGCGAAATGAAAATCGCAA--CGACA-G--
1 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
*
697331 AATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG-AA--AGAATCGCAATGCGAAATGAA
697369 AATCGCAATGCGAAATGAAATCGCAATGCGAAATGAA
1 AATCGCAA--CGAAA-G-AATCGCAATGCGAAATGAA
697406 AATCGCAACGAAAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAAAGAATCGCAATGCGAAATGAA
697439 AATCGCAA
1 AATCGCAA
697447 TGCGAAATGA
Statistics
Matches: 161, Mismatches: 6, Indels: 34
0.80 0.03 0.17
Matches are distributed among these distances:
33 74 0.46
34 4 0.02
35 19 0.12
36 7 0.04
37 37 0.23
38 20 0.12
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (33 bp):
AATCGCAACGAAAGAATCGCAATGCGAAATGAA
Found at i:697301 original size:52 final size:52
Alignment explanation
Indices: 697189--697465 Score: 386
Period size: 52 Copynumber: 5.2 Consensus size: 52
697179 AAATCCCAAC
697189 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
697242 ATG-AAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
697293 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
697345 ATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGA-G-AATCGCAATGCGAA
*
697401 ATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
697453 ATGAAAATCGCAA
1 ATGAAAATCGCAA
697466 CGAGATAATC
Statistics
Matches: 210, Mismatches: 6, Indels: 17
0.90 0.03 0.07
Matches are distributed among these distances:
51 51 0.24
52 117 0.56
53 5 0.02
54 10 0.05
55 1 0.00
56 26 0.12
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:697411 original size:141 final size:137
Alignment explanation
Indices: 697161--697503 Score: 514
Period size: 141 Copynumber: 2.5 Consensus size: 137
697151 CGGAAAATAC
* * *
697161 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAA--CG
1 AATCGCAATGCGAAATGAAAATCGCAAC--GAAAATCGCAATGC-GAAATTAAAATCGCAATGCG
* *
697224 -AGAGAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAAT
63 AAGAAAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAAT
697288 GCGAAATGAA
128 GCGAAATGAA
697298 AATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATTAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTAAAATCGCAATGCG-
697363 AATGAAAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAA
63 AA-GAAAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAA
697428 TGCGAAATGAA
127 TGCGAAATGAA
*
697439 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATTATAAA-CGCATTGCG
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTA-AAATCGCAATGCG
697503 A
63 A
697504 TTTTCATTTC
Statistics
Matches: 190, Mismatches: 8, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
135 2 0.01
136 16 0.08
137 37 0.19
138 2 0.01
140 2 0.01
141 128 0.67
142 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (137 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAAATCGCAATGCGAAATTAAAATCGCAATGCGAAG
AAAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCG
AAATGAA
Found at i:697503 original size:52 final size:51
Alignment explanation
Indices: 697231--697503 Score: 240
Period size: 52 Copynumber: 5.2 Consensus size: 51
697221 ACGAGAGAAT
* *
697231 CGCAATGCGAAATG-AAATCGCAATGCGAAATGAAAATCGCAA--CGAGA-G-AAT
1 CGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAA
* *
697282 CGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGACA-G-AAT
1 CGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAA
* *
697334 CGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAT
1 CGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAA
697390 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAA
1 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAA
* * *
697441 TCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATTATAAA
1 -CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGA-AAA
*
697494 CGCATTGCGA
1 CGCAATGCGA
697504 TTTTCATTTC
Statistics
Matches: 206, Mismatches: 9, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
51 34 0.17
52 132 0.64
53 4 0.02
54 9 0.04
55 1 0.00
56 26 0.13
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (51 bp):
CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAA
Found at i:697603 original size:19 final size:19
Alignment explanation
Indices: 697494--697595 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
697484 AAATTATAAA
697494 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
697513 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
697533 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
697549 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
697566 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
697585 CGCATTGCGAT
1 CGCATTGCGAT
697596 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:697721 original size:14 final size:14
Alignment explanation
Indices: 697702--697738 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
697692 CATCAATTAC
697702 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
697716 ACAAATCATCTTTT
1 ACAAATCAACTTTT
697730 ACAAATCAA
1 ACAAATCAA
697739 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:699737 original size:14 final size:14
Alignment explanation
Indices: 699718--699774 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
699708 GCGAAATTAA
*
699718 AATCGCAACGACAG
1 AATCGCAACGAAAG
699732 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
699749 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
699765 AATCGCAACG
1 AATCGCAACG
699775 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:699745 original size:33 final size:33
Alignment explanation
Indices: 699699--699791 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
699689 GCGAAACCAA
* *
699699 AATCGCAACGCGAAATTAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
699732 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
699765 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
699792 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:699756 original size:19 final size:19
Alignment explanation
Indices: 699662--699796 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
699652 TAGTTTACTT
* *
699662 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
699682 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
*
699701 TCGCAACGCGAAATTAAAA
1 TCGCAACGCGAAATGAAAA
*
699720 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
699734 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
699753 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
699767 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
699786 TCGCAATGCGA
1 TCGCAACGCGA
699797 TTTTGGTTTC
Statistics
Matches: 96, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
14 16 0.17
16 10 0.10
17 11 0.11
19 47 0.49
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:699814 original size:19 final size:19
Alignment explanation
Indices: 699792--699920 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
699782 AAAATCGCAA
699792 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
699811 TGCGATCTT-G-TT---GT
1 TGCGATTTTGGTTTCGCGT
699825 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
699844 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
699858 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
699877 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
699896 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
699916 TGCGA
1 TGCGA
699921 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 21 0.23
15 1 0.01
16 3 0.03
17 3 0.03
18 2 0.02
19 47 0.52
20 13 0.14
ACGTcount: A:0.09, C:0.16, G:0.29, T:0.47
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:699834 original size:33 final size:33
Alignment explanation
Indices: 699792--699883 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
699782 AAAATCGCAA
*
699792 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTTGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
699825 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
699858 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
699884 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 53 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.17, G:0.28, T:0.47
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:700347 original size:92 final size:93
Alignment explanation
Indices: 699964--700528 Score: 1089
Period size: 93 Copynumber: 6.1 Consensus size: 93
699954 TTGAATGGAT
699964 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
700029 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700057 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
700122 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700150 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
700215 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700243 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
700307 ATTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700335 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
700399 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700427 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
* *
700492 AGTTTAGCAGAATTGGCAGCAACCAAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
700520 AAATTTACT
1 AAATTTACT
700529 AAGCAATCTA
Statistics
Matches: 467, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
92 182 0.39
93 285 0.61
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:702253 original size:14 final size:14
Alignment explanation
Indices: 702234--702323 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
702224 TTGAAATGAA
702234 AATCGCAACGAGAG
1 AATCGCAACGAGAG
702248 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
702265 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
702281 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
702300 AATCGCAACGAGAG
1 AATCGCAACGAGAG
702314 AATCGCAACG
1 AATCGCAACG
702324 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:702271 original size:33 final size:33
Alignment explanation
Indices: 702226--702340 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
702216 TCTTTTGGTT
702226 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
702259 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
702292 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
702325 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
702341 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:702272 original size:19 final size:18
Alignment explanation
Indices: 702233--702345 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
702223 GTTGAAATGA
702233 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
702248 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
702265 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
702281 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
702298 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
702314 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
702331 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
702346 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:702376 original size:14 final size:14
Alignment explanation
Indices: 702357--702410 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 14
702347 TTTGGTTTCG
702357 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
702371 CGTTGCGATTTCATTTCG
1 CGTTGCGA-TTC---TCT
702389 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
702403 CGTTGCGA
1 CGTTGCGA
702411 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 18 0.53
15 3 0.09
17 3 0.09
18 10 0.29
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:702394 original size:18 final size:17
Alignment explanation
Indices: 702352--702398 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
702342 GCGATTTTGG
702352 TTTCGCGTTGCGA-TTC
1 TTTCGCGTTGCGATTTC
*
702368 --TCTCGTTGCGATTTC
1 TTTCGCGTTGCGATTTC
702383 ATTTCGCGTTGCGATT
1 -TTTCGCGTTGCGATT
702399 CTCTCGTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 10 0.40
15 3 0.12
18 12 0.48
ACGTcount: A:0.09, C:0.23, G:0.23, T:0.45
Consensus pattern (17 bp):
TTTCGCGTTGCGATTTC
Found at i:702573 original size:33 final size:33
Alignment explanation
Indices: 702531--702601 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
702521 AATACTAACT
*
702531 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
702564 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
702597 TGAAA
1 TGAAA
702602 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:702835 original size:22 final size:22
Alignment explanation
Indices: 702783--702837 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
702773 TGGTTGTGAG
**
702783 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
702805 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
702827 GGATTTCTTCG
1 GGATTTCTTCG
702838 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:703008 original size:20 final size:20
Alignment explanation
Indices: 702983--703175 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
702973 CTTTAAATAT
702983 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
703003 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
703025 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
703044 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
703064 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
703084 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
703104 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
703124 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
703144 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
703164 CGCGTTGCGATT
1 CGCGTTGCGATT
703176 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:703170 original size:60 final size:60
Alignment explanation
Indices: 702983--703175 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
702973 CTTTAAATAT
**
702983 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
703044 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
703104 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
703164 CGCGTTGCGATT
1 CGCGTTGCGATT
703176 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:703256 original size:20 final size:20
Alignment explanation
Indices: 703231--703282 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
703221 AAGAATCGCG
*
703231 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
703251 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
703271 TTGCGATTCTGG
1 TTGCGATTCTGG
703283 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:706140 original size:26 final size:26
Alignment explanation
Indices: 706106--706155 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
706096 TTCTTATGCC
706106 CAAAACTTGAA-ATGTGGAGCTTAAAA
1 CAAAACTTGAAGA-GTGGAGCTTAAAA
* *
706132 CAAAGCTTGAAGAGTGGAGTTTAA
1 CAAAACTTGAAGAGTGGAGCTTAA
706156 CATTATTACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (26 bp):
CAAAACTTGAAGAGTGGAGCTTAAAA
Found at i:707219 original size:2 final size:2
Alignment explanation
Indices: 707212--707250 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
707202 GGGTTTTTAA
707212 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
707251 ATGTTTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:711603 original size:2 final size:2
Alignment explanation
Indices: 711596--711629 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
711586 CTCATACTCA
711596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
711630 TTTGCAATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:711670 original size:12 final size:12
Alignment explanation
Indices: 711653--711677 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
711643 TCAAATATCA
711653 TTTTTGTGCATT
1 TTTTTGTGCATT
711665 TTTTTGTGCATT
1 TTTTTGTGCATT
711677 T
1 T
711678 GTGGTGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (12 bp):
TTTTTGTGCATT
Found at i:713535 original size:26 final size:29
Alignment explanation
Indices: 713496--713549 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 29
713486 TATTTTAGTT
713496 AATGTAAAATAAA-TATTTAAATT-TTAAA
1 AATGTAAAATAAATTA-TTAAATTGTTAAA
713524 AATGT-AAA-AAATTATTAAATTGTTAA
1 AATGTAAAATAAATTATTAAATTGTTAA
713550 TCAAGTAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 10 0.42
27 9 0.38
28 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (29 bp):
AATGTAAAATAAATTATTAAATTGTTAAA
Found at i:713549 original size:27 final size:28
Alignment explanation
Indices: 713496--713549 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
713486 TATTTTAGTT
713496 AATGTAAAATAAATATTTAAATTTTAAA
1 AATGTAAAATAAATATTTAAATTTTAAA
*
713524 AATGTAAAA-AATTA-TTAAATTGTTAA
1 AATGTAAAATAAATATTTAAATT-TTAA
713550 TCAAGTAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 8 0.33
28 9 0.38
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (28 bp):
AATGTAAAATAAATATTTAAATTTTAAA
Found at i:718741 original size:2 final size:2
Alignment explanation
Indices: 718734--718768 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
718724 GACATTACGG
718734 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
718769 AATGAGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:719168 original size:3 final size:3
Alignment explanation
Indices: 719160--719192 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
719150 TTTCCAAGGA
*
719160 ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
719193 GGACAAGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:723055 original size:45 final size:47
Alignment explanation
Indices: 722958--723056 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 47
722948 TATTTTCGTT
* *
722958 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAAGTTTAT
1 TTTTT-GAATAAATGCATGCGAACTAGATATCATGAGGTTAAGTTTAC
* *
723006 TTTTTGAAT-AA-GCATGCGAATTAGATATCATGAGGTTAGGATTT-C
1 TTTTTGAATAAATGCATGCGAACTAGATATCATGAGGTTAAG-TTTAC
723051 TTTTTG
1 TTTTTG
723057 TGGATAACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
45 32 0.70
46 5 0.11
47 4 0.09
48 5 0.11
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (47 bp):
TTTTTGAATAAATGCATGCGAACTAGATATCATGAGGTTAAGTTTAC
Found at i:732804 original size:7 final size:7
Alignment explanation
Indices: 732704--732901 Score: 82
Period size: 8 Copynumber: 26.3 Consensus size: 7
732694 ATTTCGCTTG
*
732704 AAGAAGA
1 AAGAAAA
*
732711 AATAAAA
1 AAGAAAA
*
732718 GAGAAAA
1 AAGAAAA
732725 AATGAAAA
1 AA-GAAAA
732733 AATGAAAA
1 AA-GAAAA
*
732741 AA-AAGA
1 AAGAAAA
732747 AA-AAAA
1 AAGAAAA
*
732753 AATAAAA
1 AAGAAAA
* *
732760 ATGAGAAG
1 AAGA-AAA
732768 AAG-AAA
1 AAGAAAA
732774 AAGAAGAA
1 AAGAA-AA
732782 AAGAAAA
1 AAGAAAA
732789 ATGAGAAAA
1 A--AGAAAA
732798 AAGAAAA
1 AAGAAAA
732805 GTGATAGAAAA
1 ---A-AGAAAA
732816 AACGAAAA
1 AA-GAAAA
732824 GAA-AAAA
1 -AAGAAAA
*
732831 AGAGAAGA
1 A-AGAAAA
732839 AA-AAAA
1 AAGAAAA
**
732845 TGGAAAATA
1 AAG-AAA-A
732854 GAAGAAAA
1 -AAGAAAA
732862 AATGAAAA
1 AA-GAAAA
*
732870 ATGAAAA
1 AAGAAAA
*
732877 ATGAAAA
1 AAGAAAA
732884 AAGAGAAA
1 AAGA-AAA
732892 AATGAAAA
1 AA-GAAAA
732900 AA
1 AA
732902 AAGAAATAAA
Statistics
Matches: 149, Mismatches: 20, Indels: 43
0.70 0.09 0.20
Matches are distributed among these distances:
6 19 0.13
7 51 0.34
8 56 0.38
9 15 0.10
10 2 0.01
11 6 0.04
ACGTcount: A:0.75, C:0.01, G:0.18, T:0.07
Consensus pattern (7 bp):
AAGAAAA
Found at i:732831 original size:14 final size:13
Alignment explanation
Indices: 732723--732844 Score: 75
Period size: 14 Copynumber: 8.9 Consensus size: 13
732713 TAAAAGAGAA
*
732723 AAAATGAAAAAATG
1 AAAA-GAAAAAAAG
* *
732737 AAAAAAAAGAAAAA
1 AAAAGAAA-AAAAG
* *
732751 AAAATAAAAATGAG
1 AAAAGAAAAA-AAG
732765 AAGAAGAAAAAGAAG
1 AA-AAGAAAAA-AAG
*
732780 AAAAGAAAAATGAG
1 AAAAGAAAAA-AAG
*
732794 AAAA-AAGAAAAG
1 AAAAGAAAAAAAG
* * *
732806 TGATAGAAAAAACG
1 -AAAAGAAAAAAAG
732820 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
*
732833 AGAAGAAAAAAA
1 AAAAGAAAAAAA
732845 TGGAAAATAG
Statistics
Matches: 82, Mismatches: 21, Indels: 11
0.72 0.18 0.10
Matches are distributed among these distances:
12 2 0.02
13 32 0.39
14 37 0.45
15 11 0.13
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.06
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:732876 original size:6 final size:7
Alignment explanation
Indices: 732859--732900 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
732849 AAATAGAAGA
732859 AAAAATG
1 AAAAATG
732866 AAAAATG
1 AAAAATG
732873 AAAAATG
1 AAAAATG
*
732880 AAAAAAGAG
1 -AAAAA-TG
732889 AAAAATG
1 AAAAATG
732896 AAAAA
1 AAAAA
732901 AAAGAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 20 0.65
8 10 0.32
9 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (7 bp):
AAAAATG
Found at i:732902 original size:32 final size:33
Alignment explanation
Indices: 732721--732901 Score: 94
Period size: 33 Copynumber: 5.4 Consensus size: 33
732711 AATAAAAGAG
**
732721 AAAAAATGAAAAAATGAAAAAAAAGAAAAAA-AA-
1 AAAAAATGAAAAAA-G-AAAAATGGAAAAAAGAAG
*
732754 ATAAAAATGAGAAGAAGAAAAA--GAAGAAAAGAA-
1 A-AAAAATGA-AAAAAGAAAAATGGAA-AAAAGAAG
** *
732787 AAATGA-GAAAAAAGAAAAGTGATAGAAAAAACGAAAAG
1 AAAAAATGAAAAAAGAAAA---ATGGAAAAAA-G--AAG
* * *
732825 AAAAAAAGAGAAGAA-AAAAATGGAAAATAGAAG
1 AAAAAATGA-AAAAAGAAAAATGGAAAAAAGAAG
*
732858 AAAAAATGAAAAATGAAAAAT-GAAAAAAG-AG
1 AAAAAATGAAAAAAGAAAAATGGAAAAAAGAAG
732889 -AAAAATGAAAAAA
1 AAAAAATGAAAAAA
732902 AAGAAATAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 35
0.71 0.08 0.21
Matches are distributed among these distances:
30 21 0.18
31 7 0.06
32 17 0.14
33 27 0.23
34 13 0.11
35 9 0.08
36 8 0.07
37 2 0.02
38 4 0.03
39 6 0.05
40 4 0.03
ACGTcount: A:0.75, C:0.01, G:0.17, T:0.07
Consensus pattern (33 bp):
AAAAAATGAAAAAAGAAAAATGGAAAAAAGAAG
Found at i:732913 original size:9 final size:8
Alignment explanation
Indices: 732707--732913 Score: 79
Period size: 9 Copynumber: 24.4 Consensus size: 8
732697 TCGCTTGAAG
732707 AAGAAATAA
1 AAGAAA-AA
732716 AAGAGAAAA
1 AAGA-AAAA
732725 AATGAAAAA
1 AA-GAAAAA
*
732734 ATGAAAAAA
1 AAG-AAAAA
732743 AAGAAAAA
1 AAGAAAAA
732751 AA-AATAAA
1 AAGAA-AAA
* *
732759 AATGAGAAG
1 AA-GAAAAA
732768 AAG--AAA
1 AAGAAAAA
*
732774 AAGAAGAA
1 AAGAAAAA
732782 AAG-AAAA
1 AAGAAAAA
*
732789 ATGAGAAAA
1 AAGA-AAAA
732798 AAGAAAAGTGA
1 AAGAAAA---A
*
732809 TAGAAAAA
1 AAGAAAAA
*
732817 ACGAAAAGA
1 AAGAAAA-A
732826 AA-AAAAGA
1 AAGAAAA-A
732834 GAAGAAAAA
1 -AAGAAAAA
732843 AATGGAAAATA
1 AA--GAAAA-A
732854 GAAGAAAAA
1 -AAGAAAAA
*
732863 ATG-AAAA
1 AAGAAAAA
*
732870 ATG-AAAA
1 AAGAAAAA
*
732877 ATG-AAAA
1 AAGAAAAA
732884 AAGAGAAAA
1 AAGA-AAAA
*
732893 ATGAAAAAA
1 AAG-AAAAA
732902 AAGAAATAA
1 AAGAAA-AA
732911 AAG
1 AAG
732914 GAGGGTTCAA
Statistics
Matches: 157, Mismatches: 17, Indels: 48
0.71 0.08 0.22
Matches are distributed among these distances:
6 5 0.03
7 27 0.17
8 41 0.26
9 54 0.34
10 20 0.13
11 8 0.05
12 2 0.01
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (8 bp):
AAGAAAAA
Found at i:734214 original size:41 final size:41
Alignment explanation
Indices: 734169--734265 Score: 104
Period size: 51 Copynumber: 2.1 Consensus size: 41
734159 TCGTTTGTTG
734169 AAGTTTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
1 AAGTTTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
734210 AAGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
1 AA----G-T-----TTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
734261 AAGTT
1 AAGTT
734266 CGTTGAAGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 20
0.70 0.00 0.30
Matches are distributed among these distances:
41 3 0.07
45 1 0.02
46 2 0.04
47 1 0.02
51 39 0.85
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (41 bp):
AAGTTTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGAC
Found at i:734353 original size:55 final size:55
Alignment explanation
Indices: 734160--734603 Score: 501
Period size: 55 Copynumber: 8.3 Consensus size: 55
734150 GAAGCAAACT
* * *
734160 CGTTTGTTGAAG--T-TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
* * * * *
734211 AGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
* * *
734262 AGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
* *
734313 CGTTTGTTGAAGATTGTTTGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACT
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
734368 CGTTT-TATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CGTTTGT-TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
734423 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
* * * * *
734478 CGTTT-TTAGGAAGATTGTTCGAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACA
1 CGTTTGTT--GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACC
* * * *
734534 CGTTTGTTGAAGATTGTTCGAG-TCTTATACTC-CTTAAAAGAATAGGGAGCAGACC
1 CGTTTGTTGAAGATTGTTCGAGTTC-TATACTCTC-TGAAGGAATAGAGAGCGGACC
734589 CGTTAT-TTGAAGATT
1 CGTT-TGTTGAAGATT
734604 TTTCACGTCT
Statistics
Matches: 362, Mismatches: 18, Indels: 22
0.90 0.04 0.05
Matches are distributed among these distances:
51 108 0.30
54 6 0.02
55 200 0.55
56 46 0.13
57 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (55 bp):
CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
Found at i:738106 original size:23 final size:23
Alignment explanation
Indices: 738080--738130 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
738070 AACGTTTAAA
*
738080 AATATATTCATTTAATTTTTATG
1 AATATATTCATTTAATTTTCATG
*
738103 AATATATTTATTTAATTTTCATG
1 AATATATTCATTTAATTTTCATG
738126 AATAT
1 AATAT
738131 TAAATAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (23 bp):
AATATATTCATTTAATTTTCATG
Found at i:738360 original size:69 final size:67
Alignment explanation
Indices: 738265--738404 Score: 244
Period size: 69 Copynumber: 2.1 Consensus size: 67
738255 ATTTTATTAT
* *
738265 TAAAAATGGTAAACTACATCACTAATCATTGAACTTTATGTTTTGTCTCGTTTTAATCACTGAAG
1 TAAAAATGGTAAAATACATCACTAATCATTAAACTTTATGTTTTGTCTCGTTTTAATCACTGAAG
738330 TA
66 TA
738332 TAAAAATGGTAAAGTATACATCACTAATCATTAAACTTTATGTTTTGTCTCGTTTTAATCACTGA
1 TAAAAATGGTAAA--ATACATCACTAATCATTAAACTTTATGTTTTGTCTCGTTTTAATCACTGA
738397 AGTA
64 AGTA
738401 TAAA
1 TAAA
738405 CAATTTCAGT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
67 13 0.19
69 56 0.81
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (67 bp):
TAAAAATGGTAAAATACATCACTAATCATTAAACTTTATGTTTTGTCTCGTTTTAATCACTGAAG
TA
Found at i:739775 original size:25 final size:25
Alignment explanation
Indices: 739747--739800 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
739737 AAAATTATTC
* *
739747 ATTTT-AATTTTGAATCTAAATTTAA
1 ATTTTAAATTTTCAATAT-AATTTAA
*
739772 ATTTTAAATTTTCAATATCATTTAA
1 ATTTTAAATTTTCAATATAATTTAA
739797 ATTT
1 ATTT
739801 AATATTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTTTAAATTTTCAATATAATTTAA
Found at i:751232 original size:19 final size:20
Alignment explanation
Indices: 751208--751258 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
751198 TGCTATTTTT
751208 AGTATCGATACTCAA-GGTG
1 AGTATCGATACTCAAGGGTG
* * *
751227 AGTATCAATATTCAAGGGTT
1 AGTATCGATACTCAAGGGTG
751247 AGTATCGATACT
1 AGTATCGATACT
751259 TGATAACTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (20 bp):
AGTATCGATACTCAAGGGTG
Found at i:754791 original size:13 final size:13
Alignment explanation
Indices: 754791--754822 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
754781 CCGTTGACCC
754791 GACCCGACCCGTT
1 GACCCGACCCGTT
*
754804 TACCCGACCCGTT
1 GACCCGACCCGTT
754817 GACCCG
1 GACCCG
754823 TTGACCGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:754792 original size:18 final size:18
Alignment explanation
Indices: 754769--754828 Score: 84
Period size: 18 Copynumber: 3.2 Consensus size: 18
754759 ACCGGTCACA
754769 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
754787 ACCCGACCCGACCCGTTT
1 ACCCGACCCGACCCGTTG
754805 ACCCGACCCGTTGACCCGTTG
1 ACCCGACCC---GACCCGTTG
754826 ACC
1 ACC
754829 GTTGACCCGT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 26 0.70
21 11 0.30
ACGTcount: A:0.17, C:0.48, G:0.20, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:754832 original size:15 final size:15
Alignment explanation
Indices: 754812--754845 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
754802 TTTACCCGAC
754812 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
754827 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
754842 CCGT
1 CCGT
754846 CGTTGACCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.12, C:0.35, G:0.26, T:0.26
Consensus pattern (15 bp):
CCGTTGACCCGTTGA
Found at i:754851 original size:10 final size:8
Alignment explanation
Indices: 754809--754853 Score: 65
Period size: 8 Copynumber: 5.5 Consensus size: 8
754799 CCGTTTACCC
754809 GACCCGTT
1 GACCCGTT
754817 GACCCGTT
1 GACCCGTT
754825 GA-CCGTT
1 GACCCGTT
754832 GACCCGTT
1 GACCCGTT
754840 GACCGTCGTT
1 GACC--CGTT
754850 GACC
1 GACC
754854 ACTGTTAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
8 19 0.56
10 8 0.24
ACGTcount: A:0.13, C:0.36, G:0.27, T:0.24
Consensus pattern (8 bp):
GACCCGTT
Found at i:756208 original size:43 final size:42
Alignment explanation
Indices: 756141--756222 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 42
756131 TGATGAGATT
** *
756141 GAATTAAATAATAAGATTGGATGGAGGAAAAAGATATAAATTG
1 GAATTAAATAATAAGACCGAATGGAGGAAAAAGAT-TAAATTG
756184 GAATTAAATAATAAGACCGAATGGAGGAAAAAGATTAAA
1 GAATTAAATAATAAGACCGAATGGAGGAAAAAGATTAAA
756223 ATACCGTGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 4 0.11
43 32 0.89
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (42 bp):
GAATTAAATAATAAGACCGAATGGAGGAAAAAGATTAAATTG
Found at i:757383 original size:12 final size:12
Alignment explanation
Indices: 757368--757424 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
757358 GATAAATGAC
757368 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
757380 CTGATTTCTGAT
1 CTGAATTCTGTT
*
757392 CTGGATTCTGTT
1 CTGAATTCTGTT
757404 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
757416 CTGAATTCT
1 CTGAATTCT
757425 ATTTTGATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 2 0.05
12 34 0.89
13 2 0.05
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.49
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:757420 original size:48 final size:49
Alignment explanation
Indices: 757331--757439 Score: 123
Period size: 48 Copynumber: 2.3 Consensus size: 49
757321 AAATATTTTA
* *
757331 TCTGATTTCCGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATCTTGAATTCTGTTCTGATAAATGACCTGAATTCTAT
* ** **
757379 TCTGATTTCTGATC-TGGATTCTGTTCTGATATCTGTTCTGAATTCTAT
1 TCTGATTTCTGATCTTGAATTCTGTTCTGATAAATGACCTGAATTCTAT
* *
757427 TTTGATTTTTGAT
1 TCTGATTTCTGAT
757440 ATCTTCGTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 50 0.98
49 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (49 bp):
TCTGATTTCTGATCTTGAATTCTGTTCTGATAAATGACCTGAATTCTAT
Found at i:757432 original size:24 final size:24
Alignment explanation
Indices: 757345--757424 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
757335 ATTTCCGACT
** *
757345 TGAATTCTGTTCTGATAAATGACC
1 TGAATTCTGTTCTGATATCTGATC
*
757369 TGAATTCTGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATATCTGATC
* *
757393 TGGATTCTGTTCTGATATCTGTTC
1 TGAATTCTGTTCTGATATCTGATC
757417 TGAATTCT
1 TGAATTCT
757425 ATTTTGATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.20, C:0.16, G:0.17, T:0.46
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATCTGATC
Found at i:759581 original size:13 final size:13
Alignment explanation
Indices: 759581--759612 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
759571 CCGTTGACCC
759581 GACCCGACCCGTT
1 GACCCGACCCGTT
*
759594 TACCCGACCCGTT
1 GACCCGACCCGTT
759607 GACCCG
1 GACCCG
759613 TTGACCGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:759585 original size:18 final size:18
Alignment explanation
Indices: 759562--759618 Score: 78
Period size: 18 Copynumber: 3.0 Consensus size: 18
759552 TGACCGGTCA
759562 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
*
759580 CGACCCGACCCGTTTACC
1 CGACCCGACCCGTTGACC
759598 CGACCCGTTGACCCGTTGACC
1 CGACCC---GACCCGTTGACC
759619 GTTGACCCGT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 23 0.68
21 11 0.32
ACGTcount: A:0.16, C:0.47, G:0.21, T:0.16
Consensus pattern (18 bp):
CGACCCGACCCGTTGACC
Found at i:759598 original size:8 final size:8
Alignment explanation
Indices: 759599--759660 Score: 74
Period size: 8 Copynumber: 7.5 Consensus size: 8
759589 CCGTTTACCC
759599 GACCCGTT
1 GACCCGTT
759607 GACCCGTT
1 GACCCGTT
759615 GA-CCGTT
1 GACCCGTT
759622 GACCCGTT
1 GACCCGTT
759630 GA-CCGTT
1 GACCCGTT
759637 GACCGTCGTT
1 GACC--CGTT
759647 GACCACTGTT
1 GACC-C-GTT
759657 GACC
1 GACC
759661 AAAACTTTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
7 14 0.29
8 18 0.38
9 1 0.02
10 15 0.31
ACGTcount: A:0.15, C:0.34, G:0.26, T:0.26
Consensus pattern (8 bp):
GACCCGTT
Found at i:759622 original size:7 final size:7
Alignment explanation
Indices: 759602--759642 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
759592 TTTACCCGAC
759602 CCGTTGA
1 CCGTTGA
759609 CCCGTTGA
1 -CCGTTGA
759617 CCGTTGA
1 CCGTTGA
759624 CCCGTTGA
1 -CCGTTGA
759632 CCGTTGA
1 CCGTTGA
759639 CCGT
1 CCGT
759643 CGTTGACCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 18 0.56
8 14 0.44
ACGTcount: A:0.12, C:0.34, G:0.27, T:0.27
Consensus pattern (7 bp):
CCGTTGA
Found at i:759622 original size:15 final size:15
Alignment explanation
Indices: 759602--759650 Score: 80
Period size: 15 Copynumber: 3.1 Consensus size: 15
759592 TTTACCCGAC
759602 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
759617 CCGTTGACCCGTTGA
1 CCGTTGACCCGTTGA
759632 CCGTTGACCGTCGTTGA
1 CCGTTGACC--CGTTGA
759649 CC
1 CC
759651 ACTGTTGACC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 24 0.75
17 8 0.25
ACGTcount: A:0.12, C:0.35, G:0.27, T:0.27
Consensus pattern (15 bp):
CCGTTGACCCGTTGA
Found at i:762186 original size:12 final size:12
Alignment explanation
Indices: 762171--762240 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
762161 GATAAATGAC
*
762171 CTGAATTATGTT
1 CTGAATTCTGTT
* *
762183 CTGATTTCTGAT
1 CTGAATTCTGTT
*
762195 CTGGATTCTGTT
1 CTGAATTCTGTT
*
762207 ATGATATT-TGTT
1 CTGA-ATTCTGTT
762219 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
762231 TTGATTTCTG
1 CTGAATTCTG
762241 ATATCTTCGT
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
11 3 0.07
12 39 0.87
13 3 0.07
ACGTcount: A:0.17, C:0.11, G:0.19, T:0.53
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:762206 original size:24 final size:24
Alignment explanation
Indices: 762134--762242 Score: 96
Period size: 24 Copynumber: 4.5 Consensus size: 24
762124 AAATATTTTA
*
762134 TCTGATTTCCGA-CTTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGT
*** * *
762158 TCTGATAAATGACCTGAATTATGT
1 TCTGATTTCTGATCTGAATTCTGT
*
762182 TCTGATTTCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
762206 TATGATATT-TGTTCTGAATTCTGT
1 TCTGAT-TTCTGATCTGAATTCTGT
*
762230 TTTGATTTCTGAT
1 TCTGATTTCTGAT
762243 ATCTTCGTTT
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
23 2 0.03
24 61 0.92
25 3 0.05
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:763398 original size:21 final size:20
Alignment explanation
Indices: 763370--763408 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
763360 TATTGCAGGA
* *
763370 ATTTATGGCTTCGACAAAAG
1 ATTTATGGCCTCCACAAAAG
763390 ATTTCATGGCCTCCACAAA
1 ATTT-ATGGCCTCCACAAA
763409 GTCCTTGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (20 bp):
ATTTATGGCCTCCACAAAAG
Found at i:765680 original size:27 final size:25
Alignment explanation
Indices: 765623--765680 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
765613 TTTAATTGTG
765623 ATTATATTTTAAAATTTAAAACATA
1 ATTATATTTTAAAATTTAAAACATA
* * *
765648 ATTTATAATTTTTATATTTAAAATCTTA
1 A-TTAT-ATTTTAAAATTTAAAA-CATA
765676 ATTAT
1 ATTAT
765681 CAAACAATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 4 0.15
27 18 0.67
28 4 0.15
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTATATTTTAAAATTTAAAACATA
Found at i:765948 original size:38 final size:37
Alignment explanation
Indices: 765876--765958 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 37
765866 ATCTATAATA
* * *
765876 TAATATTAAAAAATTAATATTTAATTTATTTAAAAAAT
1 TAATATT-AAAAATTAATATCTAATTAATATAAAAAAT
*
765914 TAATATT-AAAATTAATATCTATATATAATATAAAATAT
1 TAATATTAAAAATTAATATCTA-AT-TAATATAAAAAAT
765952 TAATATT
1 TAATATT
765959 TAATTTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 13 0.33
37 2 0.05
38 24 0.62
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (37 bp):
TAATATTAAAAATTAATATCTAATTAATATAAAAAAT
Found at i:765958 original size:62 final size:64
Alignment explanation
Indices: 765855--765990 Score: 240
Period size: 62 Copynumber: 2.1 Consensus size: 64
765845 TTATATGATA
765855 TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
1 TAAAATT-AATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
*
765920 TAAAATTAATATCTAT-ATATAATA-TAAAATATTAATATTTAATTTATTTAAAAAATTAATAT
1 TAAAATTAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
765982 TAAAATTAA
1 TAAAATTAA
765991 AATAAAATAT
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
62 46 0.66
63 8 0.11
64 9 0.13
65 7 0.10
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (64 bp):
TAAAATTAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
Found at i:765998 original size:11 final size:11
Alignment explanation
Indices: 765971--766018 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
765961 ATTTATTTAA
*
765971 AAAATTAATATT
1 AAAATTAA-AAT
765983 AAAATTAAAAT
1 AAAATTAAAAT
765994 AAAA-TATAAAT
1 AAAATTA-AAAT
766005 AAAATT-AAAT
1 AAAATTAAAAT
766015 AAAA
1 AAAA
766019 CCTCTTTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 10 0.30
11 14 0.42
12 9 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATTAAAAT
Done.