Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008124.1 Hibiscus syriacus cultivar Beakdansim tig00110678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3296903
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 19
Found at i:2423838 original size:14 final size:14
Alignment explanation
Indices: 2423819--2423882 Score: 58
Period size: 14 Copynumber: 5.3 Consensus size: 14
2423809 TTTATATAAA
2423819 TTATATAGTTTAAT
1 TTATATAGTTTAAT
2423833 TTATATA----AA-
1 TTATATAGTTTAAT
2423842 TTATATAGTTTAAT
1 TTATATAGTTTAAT
2423856 TTATATA----AA-
1 TTATATAGTTTAAT
2423865 TTATATAGTTTAAT
1 TTATATAGTTTAAT
2423879 TTAT
1 TTAT
2423883 TAAAAAAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 20
0.67 0.00 0.33
Matches are distributed among these distances:
9 14 0.35
10 4 0.10
13 4 0.10
14 18 0.45
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (14 bp):
TTATATAGTTTAAT
Found at i:2426824 original size:102 final size:102
Alignment explanation
Indices: 2426706--2426907 Score: 298
Period size: 102 Copynumber: 2.0 Consensus size: 102
2426696 AATGAACAAC
* * *
2426706 CAACAGTAGCTACAAATTAAACAGTTTATTTAAA-ATATAAATAAAGACAGCTAACAACCTTATA
1 CAACAATAGCTACAAATTAAACAATTTATTTAAACA-ATAAATAAAGACAACTAACAACCTTATA
*
2426770 AAAGCAATCCAAATGAATAACCAACAACACAAACAAAT
65 AAAGCAATCCAAATGAACAACCAACAACACAAACAAAT
* * * *
2426808 CAACAATATCTACAAATTAAACAATTTATTTAAACAGTAAATAAAGGCAACTAGCAACCTTATAA
1 CAACAATAGCTACAAATTAAACAATTTATTTAAACAATAAATAAAGACAACTAACAACCTTATAA
* *
2426873 AAGCAATCCGAATGAACAACCAATAACACAAACAA
66 AAGCAATCCAAATGAACAACCAACAACACAAACAA
2426908 GGACTACAGA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 88 0.99
103 1 0.01
ACGTcount: A:0.53, C:0.19, G:0.07, T:0.20
Consensus pattern (102 bp):
CAACAATAGCTACAAATTAAACAATTTATTTAAACAATAAATAAAGACAACTAACAACCTTATAA
AAGCAATCCAAATGAACAACCAACAACACAAACAAAT
Found at i:2427073 original size:20 final size:20
Alignment explanation
Indices: 2427017--2427074 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
2427007 AAAAGAAATG
* *
2427017 AATAATATATTAATAAA-AA
1 AATAATAAAATAATAAACAA
* *
2427036 AATATTAAAATAAAAAACAA
1 AATAATAAAATAATAAACAA
*
2427056 AATAATAAAATACTAAACA
1 AATAATAAAATAATAAACA
2427075 TACTTGGACC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAATAAAATAATAAACAA
Found at i:2427360 original size:6 final size:6
Alignment explanation
Indices: 2427206--2427373 Score: 115
Period size: 6 Copynumber: 27.8 Consensus size: 6
2427196 ATTTAAGTTA
* * * * * * * * *
2427206 GGGTTT GGGTTCA GGTTTT AGGTTT GGATTT GGGTTC AGATTT AGATTT
1 GGGTTT GGGTT-T GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT
* * * * *
2427255 GGGTTC GGGTTT GGG-TT CGGTTT GTGTTT -GGTTT AAGGTTT AGGTTT
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT -GGGTTT GGGTTT
* ** * *
2427302 AGGTTT GGGTTT ATGTTT AGGTTA GGGTTT GGGTTT GGGTTT GGGTTT
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT
*
2427350 AGGTTT GGGTTT AGGGTTT GGGTT
1 GGGTTT GGGTTT -GGGTTT GGGTT
2427374 CAAGTTAAGG
Statistics
Matches: 128, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
5 8 0.06
6 105 0.82
7 15 0.12
ACGTcount: A:0.10, C:0.02, G:0.40, T:0.48
Consensus pattern (6 bp):
GGGTTT
Found at i:2428379 original size:75 final size:76
Alignment explanation
Indices: 2428208--2428415 Score: 285
Period size: 76 Copynumber: 2.8 Consensus size: 76
2428198 CAAAGCCAAA
* * **
2428208 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCTAAATGGTT
1 AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
2428273 TTGGCCCCGAG
66 TTGGCCCCGAG
* *
2428284 ATTTCCAGAATGCTCAGAGGGAACCGATTCCCCCTATAGGAGGAACCGATTCCCCCTAAACAGTT
1 AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
*
2428349 TT-GCTCCGAG
66 TTGGCCCCGAG
* * * * *
2428359 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCTCCCCT
1 AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTC-CCCCT
2428416 TGTACAACGG
Statistics
Matches: 117, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
74 13 0.11
75 43 0.37
76 61 0.52
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (76 bp):
AATTCCAGAATGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
TTGGCCCCGAG
Found at i:2434226 original size:23 final size:21
Alignment explanation
Indices: 2434177--2434239 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
2434167 TTTTGGTGCA
* *
2434177 GAGGGAATCGATCCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
2434198 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
2434219 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
2434240 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.37, G:0.25, T:0.17
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:2434247 original size:21 final size:21
Alignment explanation
Indices: 2434221--2434260 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2434211 CCCCCTTTGA
*
2434221 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
2434242 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
2434261 CTGGGGTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:2436202 original size:17 final size:17
Alignment explanation
Indices: 2436180--2436222 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
2436170 TTTCAACATT
2436180 TTTGATATTT-TGGATTG
1 TTTGAT-TTTGTGGATTG
2436197 TTTGATTTTGTGGATTG
1 TTTGATTTTGTGGATTG
*
2436214 TTGGATTTT
1 TTTGATTTT
2436223 AAATTTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (17 bp):
TTTGATTTTGTGGATTG
Found at i:2436497 original size:30 final size:31
Alignment explanation
Indices: 2436463--2436535 Score: 121
Period size: 31 Copynumber: 2.3 Consensus size: 31
2436453 GGAGAAGAAT
2436463 AGGTGTTAAATG-TTTTACATAATAAATTGA
1 AGGTGTTAAATGTTTTTACATAATAAATTGA
2436493 AGGTGTTAAATGTTTTTACATAATAAATTGA
1 AGGTGTTAAATGTTTTTACATAATAAATTGA
2436524 AGAAGTGTTAAA
1 AG--GTGTTAAA
2436536 GTAAGGGGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 12 0.30
31 20 0.50
33 8 0.20
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (31 bp):
AGGTGTTAAATGTTTTTACATAATAAATTGA
Found at i:2437003 original size:76 final size:77
Alignment explanation
Indices: 2436839--2437053 Score: 283
Period size: 76 Copynumber: 2.8 Consensus size: 77
2436829 CAATTCAAAG
* * * *
2436839 CCAAAAATTACAGATTGCTCAGAGGGAACCGATTTCCCCCCATAGGAGGAACCGATT-CCCCCTA
1 CCAAGAATTCCAGAATGCTCGGAGGGAACCGA-TTCCCCCCATAGGAGGAACCGATTCCCCCCTA
**
2436903 AATGGTTTTGGCC
65 AACAGTTTTGGCC
*
2436916 CCAAGATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAA
1 CCAAGAATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAA
*
2436981 ACAGTTTT-GCT
66 ACAGTTTTGGCC
* * * * *
2436992 CCGAGAATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 CCAAGAATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
2437054 TGTACAACGG
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
75 19 0.15
76 63 0.51
77 41 0.33
ACGTcount: A:0.26, C:0.32, G:0.22, T:0.20
Consensus pattern (77 bp):
CCAAGAATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAA
ACAGTTTTGGCC
Found at i:2437874 original size:28 final size:27
Alignment explanation
Indices: 2437843--2437946 Score: 88
Period size: 28 Copynumber: 3.7 Consensus size: 27
2437833 CATCCCTATA
*
2437843 TAATTTTTATTAATTAACTATTTATAAT
1 TAATTTATATTAATTAA-TATTTATAAT
* *
2437871 TAATATTACAATAATT-ATATATTATAAT
1 TAAT-TTATATTAATTAATAT-TTATAAT
*
2437899 TAATATTGATA-TAATTAATATTAAT-AT
1 TAAT-TT-ATATTAATTAATATTTATAAT
*
2437926 TAACTTATATTAATATAATAT
1 TAATTTATATTAAT-TAATAT
2437947 AGTTTATAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
25 3 0.05
26 6 0.09
27 14 0.22
28 27 0.42
29 14 0.22
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (27 bp):
TAATTTATATTAATTAATATTTATAAT
Found at i:2437884 original size:15 final size:13
Alignment explanation
Indices: 2437853--2437974 Score: 76
Period size: 15 Copynumber: 9.2 Consensus size: 13
2437843 TAATTTTTAT
*
2437853 TAATTAACTATTTA
1 TAATTAA-TATTAA
2437867 TAATTAATATTACAA
1 TAATTAATATT--AA
2437882 TAATTATATATT-A
1 TAATTA-ATATTAA
2437895 TAATTAATATTGATA
1 TAATTAATATT-A-A
2437910 TAATTAATATTAA
1 TAATTAATATTAA
*
2437923 T-ATTAA-CTT-A
1 TAATTAATATTAA
2437933 T-ATTAATA-TAA
1 TAATTAATATTAA
* **
2437944 TATAGTTTATAATTTT
1 TA-A-TTAAT-ATTAA
2437960 TAATTAATATTAA
1 TAATTAATATTAA
2437973 TA
1 TA
2437975 TAAACTATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 27
0.70 0.07 0.22
Matches are distributed among these distances:
10 8 0.09
11 4 0.05
12 10 0.12
13 19 0.22
14 16 0.19
15 21 0.24
16 8 0.09
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (13 bp):
TAATTAATATTAA
Found at i:2437955 original size:43 final size:42
Alignment explanation
Indices: 2437853--2437973 Score: 115
Period size: 43 Copynumber: 2.8 Consensus size: 42
2437843 TAATTTTTAT
*
2437853 TAATTAACTATTTATAATTAATATTACA-A-TAATTATATATTA
1 TAATTAA-TATTTATAATTAATATTA-ATATTAATTATATAATA
2437895 TAATTAATATTGATATAATTAATATTAATATTAACTTATATTAATA
1 TAATTAATATT--TATAATTAATATTAATATTAA-TTATA-TAATA
**
2437941 TAA-T-ATAGTTTATAATTTTTAATTAATATTAAT
1 TAATTAATA-TTTATAATTAAT-ATTAATATTAAT
2437974 ATAAACTATA
Statistics
Matches: 68, Mismatches: 3, Indels: 15
0.79 0.03 0.17
Matches are distributed among these distances:
41 4 0.06
42 8 0.12
43 24 0.35
44 17 0.25
45 8 0.12
46 7 0.10
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (42 bp):
TAATTAATATTTATAATTAATATTAATATTAATTATATAATA
Found at i:2438010 original size:14 final size:14
Alignment explanation
Indices: 2437993--2438054 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
2437983 ATGTTATAAA
*
2437993 TTATATAGTATAGT
1 TTATATAATATAGT
2438007 TTATA-AACTATAGT
1 TTATATAA-TATAGT
*
2438021 TAATATAATTAATA-T
1 TTATATAA-T-ATAGT
*
2438036 TAATATAATATAGT
1 TTATATAATATAGT
2438050 TTATA
1 TTATA
2438055 AACTATATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 4 0.10
14 21 0.52
15 12 0.30
16 3 0.08
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (14 bp):
TTATATAATATAGT
Found at i:2438040 original size:15 final size:15
Alignment explanation
Indices: 2438020--2438108 Score: 56
Period size: 15 Copynumber: 5.6 Consensus size: 15
2438010 TAAACTATAG
2438020 TTAATATAATTAATA
1 TTAATATAATTAATA
*
2438035 TTAATATAATATAGTTTA
1 TTAATATAAT-TA--ATA
* *
2438053 TAAACTATATACT-ATA
1 TTAA-TATA-ATTAATA
2438069 TTAATATAAATT-ATA
1 TTAATAT-AATTAATA
* *
2438084 GTTAAGATAATTAACA
1 -TTAATATAATTAATA
2438100 TTAATATAA
1 TTAATATAA
2438109 ACTATAGTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
15 30 0.53
16 16 0.28
18 5 0.09
19 5 0.09
20 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (15 bp):
TTAATATAATTAATA
Found at i:2438054 original size:57 final size:56
Alignment explanation
Indices: 2437907--2438054 Score: 129
Period size: 57 Copynumber: 2.6 Consensus size: 56
2437897 ATTAATATTG
* ** *
2437907 ATATAATTAATATTAATATTAACTTATATTAATATAATATAGTTTATAATTTTTAATTA
1 ATATAATTAATATTAATA-TAA--TATATTTATATAATATAGTTTATAAACTATAATTA
* ** * * *
2437966 ATATTAATATAA-ACT-ATATGTTATAAATTATATAGTATAGTTTATAAACTATAGTTA
1 ATA-TAAT-TAATATTAATATAATAT-ATTTATATAATATAGTTTATAAACTATAATTA
2438023 ATATAATTAATATTAATATAATATAGTTTATA
1 ATATAATTAATATTAATATAATATA-TTTATA
2438055 AACTATATAC
Statistics
Matches: 69, Mismatches: 14, Indels: 14
0.71 0.14 0.14
Matches are distributed among these distances:
55 3 0.04
56 10 0.14
57 40 0.58
58 1 0.01
59 6 0.09
60 6 0.09
61 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (56 bp):
ATATAATTAATATTAATATAATATATTTATATAATATAGTTTATAAACTATAATTA
Found at i:2438068 original size:21 final size:21
Alignment explanation
Indices: 2437973--2438156 Score: 103
Period size: 21 Copynumber: 8.5 Consensus size: 21
2437963 TTAATATTAA
*
2437973 TATAAACTATA-TGTTATAAAT
1 TATATACTATAGT-TTATAAAT
* *
2437994 TATATAGTATAGTTTATAAAC
1 TATATACTATAGTTTATAAAT
* * *
2438015 TATAGTTAATATA-ATTA-ATAT
1 TATA--TACTATAGTTTATAAAT
* *
2438036 TAATATAATATAGTTTATAAAC
1 T-ATATACTATAGTTTATAAAT
2438058 TATATACTATA-TTAATATAAAT
1 TATATACTATAGTT--TATAAAT
* *
2438080 TATAGT--TA-AGATAATTAACAT
1 TATA-TACTATAGTTTA-TAA-AT
2438101 TAATATAAACTATAGTTTATAAAT
1 T-ATAT--ACTATAGTTTATAAAT
* *
2438125 TATATACTATAGGTTATAAAG
1 TATATACTATAGTTTATAAAT
2438146 TATATACTATA
1 TATATACTATA
2438157 TAGTACACTA
Statistics
Matches: 127, Mismatches: 18, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
19 1 0.01
20 13 0.10
21 67 0.53
22 23 0.18
23 11 0.09
24 3 0.02
25 5 0.04
26 4 0.03
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.42
Consensus pattern (21 bp):
TATATACTATAGTTTATAAAT
Found at i:2438081 original size:50 final size:48
Alignment explanation
Indices: 2437916--2438094 Score: 157
Period size: 50 Copynumber: 3.6 Consensus size: 48
2437906 GATATAATTA
* * *
2437916 ATATTAATATTAACTTATATTAATATAATATAGTTTATAATTTTTAATT
1 ATATTAATA-TAAATTATATTAATATAATATAGTTTATAATTTATAACT
* * * *
2437965 AATATTAATATAAACTATATGTTATA-AATTATA-TAGTATAGTTTATAAACT
1 -ATATTAATATAAATTATAT-TAATATAA-TATAGT-TTATAATTTAT-AACT
**
2438016 ATAGTTAATAT-AATTAATATTAATATAATATAGTTTATAAACTATATACT
1 ATA-TTAATATAAATT-ATATTAATATAATATAGTTTATAATTTATA-ACT
*
2438066 ATATTAATATAAATTATAGTTAAGATAAT
1 ATATTAATATAAATTATA-TTAATATAAT
2438095 TAACATTAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
49 22 0.21
50 65 0.62
51 17 0.16
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (48 bp):
ATATTAATATAAATTATATTAATATAATATAGTTTATAATTTATAACT
Found at i:2438094 original size:65 final size:66
Alignment explanation
Indices: 2437960--2438149 Score: 262
Period size: 65 Copynumber: 2.9 Consensus size: 66
2437950 TTATAATTTT
*
2437960 TAATTAATATTAATATAAACTATA-TGTTATAAATTATATAGTATAGTTTATAAACTATAGTTAA
1 TAATTAATATTAATATAAACTATAGT-TTATAAATTATATACTATAGTTTATAAACTATAGTTAA
*
2438024 TA
65 GA
* *
2438026 TAATTAATATTAATAT-AA-TATAGTTTATAAACTATATACTATA-TTAATATAAATTATAGTTA
1 TAATTAATATTAATATAAACTATAGTTTATAAATTATATACTATAGTT--TATAAACTATAGTTA
2438088 AGA
64 AGA
* * *
2438091 TAATTAACATTAATATAAACTATAGTTTATAAATTATATACTATAGGTTATAAAGTATA
1 TAATTAATATTAATATAAACTATAGTTTATAAATTATATACTATAGTTTATAAACTATA
2438150 TACTATATAG
Statistics
Matches: 110, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
63 2 0.02
64 21 0.19
65 34 0.31
66 28 0.25
67 24 0.22
68 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.43
Consensus pattern (66 bp):
TAATTAATATTAATATAAACTATAGTTTATAAATTATATACTATAGTTTATAAACTATAGTTAAG
A
Found at i:2438106 original size:31 final size:31
Alignment explanation
Indices: 2437960--2438117 Score: 128
Period size: 31 Copynumber: 4.9 Consensus size: 31
2437950 TTATAATTTT
2437960 TAATTAATATTAATATAAACTATATGTTATAAA
1 TAATTAATATTAATATAAACTATA-GTTA-AAA
* *
2437993 TTATATAGTATAGTT--TATAAACTATAGTTAATA
1 TAAT-TA--ATA-TTAATATAAACTATAGTTAAAA
2438026 TAATTAATATTAATAT-AA-TATAGTTTATAAA
1 TAATTAATATTAATATAAACTATAG-TTA-AAA
* *
2438057 CT-ATATACTATATTAATATAAATTATAGTTAAGA
1 -TAAT-TA--ATATTAATATAAACTATAGTTAAAA
*
2438091 TAATTAACATTAATATAAACTATAGTT
1 TAATTAATATTAATATAAACTATAGTT
2438118 TATAAATTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 32
0.73 0.05 0.23
Matches are distributed among these distances:
29 7 0.07
30 8 0.08
31 26 0.25
32 5 0.05
33 11 0.11
34 20 0.19
35 16 0.16
36 8 0.08
37 2 0.02
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (31 bp):
TAATTAATATTAATATAAACTATAGTTAAAA
Found at i:2438226 original size:20 final size:21
Alignment explanation
Indices: 2438196--2438300 Score: 91
Period size: 20 Copynumber: 5.2 Consensus size: 21
2438186 AACTATAGGT
2438196 TACATAT--ATAGTTTATATA
1 TACATATACATAGTTTATATA
*
2438215 -ACATATAAATAGATTGTATATA
1 TACATATACATAG-TT-TATATA
* *
2438237 TACATATACTATAG-GT-CATA
1 TACATATAC-ATAGTTTATATA
2438257 T--ATATACATAGTTTATATA
1 TACATATACATAGTTTATATA
*
2438276 TAC-TATACATAGTTTATACA
1 TACATATACATAGTTTATATA
2438296 TACAT
1 TACAT
2438301 GTACTATAAG
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
17 4 0.06
18 13 0.19
19 4 0.06
20 27 0.39
21 4 0.06
22 6 0.09
23 7 0.10
24 4 0.06
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (21 bp):
TACATATACATAGTTTATATA
Found at i:2438250 original size:24 final size:21
Alignment explanation
Indices: 2438199--2438266 Score: 66
Period size: 24 Copynumber: 3.0 Consensus size: 21
2438189 TATAGGTTAC
2438199 ATATATAGTTTATATA-ACAT
1 ATATATAGTTTATATATACAT
*
2438219 ATAAATAGATTGTATATATACAT
1 ATATATAG-TT-TATATATACAT
*
2438242 ATACTATAGGTCATATATATACAT
1 ATA-TATA-GT-TTATATATACAT
2438266 A
1 A
2438267 GTTTATATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 7 0.18
21 2 0.05
22 6 0.15
23 7 0.18
24 16 0.41
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
ATATATAGTTTATATATACAT
Found at i:2438400 original size:209 final size:209
Alignment explanation
Indices: 2438207--2438580 Score: 501
Period size: 209 Copynumber: 1.8 Consensus size: 209
2438197 ACATATATAG
*
2438207 TTTATATAACATATAAATAGATTGTATATAT--AC-ATAT-ACTATAGGT-CA-TATAT-ATACA
1 TTTATATAACATATAAAT--ATTGTATATATAAACTATATAAGTA-AGGTACATTATATGATACA
* * *
2438265 TAGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTGCATATATAGTTTACAT
63 TA-TATATATATACTATACATAGTTTATACATACATGTACTATAAGTTACAAATATAGTTTACAT
*
2438330 GTATACATATACTATAGGTTACATATATTAACTATTGTTTATGTATAGTGCTTAGGGTTTTTAAA
127 GTATACATATACTATAAGTTACATATATTAACTATTGTTTATGTATAGTGCTTAGGGTTTTTAAA
*
2438395 AACTATATACTTTATTAA
192 AACTATATACTATATTAA
*** ** * * ** * **
2438413 TTTATATAGTTTATGCATATTGTTTCTATAAACTATATAAGTAATTTACATTATATGGTTTATAT
1 TTTATATAACATATAAATATTGTATATATAAACTATATAAGTAAGGTACATTATATGATACATAT
2438478 ATATATATACTATACATAGTTTATACATACATGTACTATAAGTTACAAATATAGTTTACATGTAT
66 ATATATATACTATACATAGTTTATACATACATGTACTATAAGTTACAAATATAGTTTACATGTAT
2438543 ACATATACTATAAGTTACATATATTAACTATTGTTTAT
131 ACATATACTATAAGTTACATATATTAACTATTGTTTAT
2438581 AGAATATAGG
Statistics
Matches: 144, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
204 9 0.06
206 15 0.10
207 6 0.04
208 5 0.03
209 105 0.73
210 4 0.03
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (209 bp):
TTTATATAACATATAAATATTGTATATATAAACTATATAAGTAAGGTACATTATATGATACATAT
ATATATATACTATACATAGTTTATACATACATGTACTATAAGTTACAAATATAGTTTACATGTAT
ACATATACTATAAGTTACATATATTAACTATTGTTTATGTATAGTGCTTAGGGTTTTTAAAAACT
ATATACTATATTAA
Found at i:2438532 original size:35 final size:36
Alignment explanation
Indices: 2438493--2438566 Score: 96
Period size: 37 Copynumber: 2.1 Consensus size: 36
2438483 TATACTATAC
*
2438493 ATAGTTT-ATACATACATGTACTATAAGTTACAAAT
1 ATAGTTTAATACATACATATACTATAAGTTACAAAT
** *
2438528 ATAGTTTACATGTATACATATACTATAAGTTACATAT
1 ATAGTTTA-ATACATACATATACTATAAGTTACAAAT
2438565 AT
1 AT
2438567 TAACTATTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 7 0.21
37 26 0.79
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (36 bp):
ATAGTTTAATACATACATATACTATAAGTTACAAAT
Found at i:2438795 original size:28 final size:28
Alignment explanation
Indices: 2438753--2438808 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
2438743 GTTTCTTTAA
* *
2438753 TATATATATATATATATTACTTATATTAGT
1 TATACATACATATATA-TAC-TATATTAGT
2438783 TATACATACATATATATACTATATTA
1 TATACATACATATATATACTATATTA
2438809 ATATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.29
29 3 0.12
30 14 0.58
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (28 bp):
TATACATACATATATATACTATATTAGT
Found at i:2438825 original size:29 final size:29
Alignment explanation
Indices: 2438792--2438893 Score: 84
Period size: 29 Copynumber: 3.5 Consensus size: 29
2438782 TTATACATAC
*
2438792 ATATATATACTATATTAATATAAATTATA
1 ATATATAAACTATATTAATATAAATTATA
* *
2438821 ATATATAAACTATA-TAGTTTATATAGTT-T-
1 ATATATAAACTATATTA--ATATA-AATTATA
* * *
2438850 ATATGTATACTATATTAATATAAATAATA
1 ATATATAAACTATATTAATATAAATTATA
* *
2438879 TTTTATAAACTATAT
1 ATATATAAACTATAT
2438894 ACTTTTTATA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
27 2 0.04
28 7 0.13
29 36 0.65
30 7 0.13
31 3 0.05
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (29 bp):
ATATATAAACTATATTAATATAAATTATA
Found at i:2438870 original size:58 final size:58
Alignment explanation
Indices: 2438792--2438916 Score: 187
Period size: 58 Copynumber: 2.2 Consensus size: 58
2438782 TTATACATAC
* *
2438792 ATATATATACTATATTAATATAAATTATAATATATAAACTATATAGTTTATATAGTTT
1 ATATATATACTATATTAATATAAATAATAATATATAAACTATATACTTTATATAGTTT
* * * *
2438850 ATATGTATACTATATTAATATAAATAATATTTTATAAACTATATACTTTTTATAGTTT
1 ATATATATACTATATTAATATAAATAATAATATATAAACTATATACTTTATATAGTTT
*
2438908 ATACATATA
1 ATATATATA
2438917 TAGTTTATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (58 bp):
ATATATATACTATATTAATATAAATAATAATATATAAACTATATACTTTATATAGTTT
Found at i:2438893 original size:14 final size:15
Alignment explanation
Indices: 2438794--2438835 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
2438784 ATACATACAT
*
2438794 ATATATACTATATTA
1 ATATAAACTATATTA
* *
2438809 ATATAAATTATAAT-
1 ATATAAACTATATTA
2438823 ATATAAACTATAT
1 ATATAAACTATAT
2438836 AGTTTATATA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAAACTATATTA
Found at i:2438920 original size:15 final size:14
Alignment explanation
Indices: 2438900--2439094 Score: 80
Period size: 15 Copynumber: 13.1 Consensus size: 14
2438890 ATATACTTTT
2438900 TATAGTTTATACATA
1 TATAGTTTATA-ATA
2438915 TATAGTTTAT-ATA
1 TATAGTTTATAATA
*
2438928 CATAGTTTATATATA
1 TATAGTTTATA-ATA
*
2438943 TATAGTTCACATAA-A
1 TATAGTT--TATAATA
* *
2438958 CATAATTTAT-ATA
1 TATAGTTTATAATA
*
2438971 TATAACTTATAATAATTA
1 TAT-AGTT-T-ATAA-TA
2438989 TATAGTTTATAATATAAA
1 TATAGTTTAT-A-AT--A
2439007 TATAGTTTAT-ATA
1 TATAGTTTATAATA
*
2439020 CATAGTTTAT-ATA
1 TATAGTTTATAATA
* *
2439033 TATAATTCACATAA-A
1 TATAGTT--TATAATA
* * *
2439048 CATAATTTAT-GTA
1 TATAGTTTATAATA
2439061 TATAGCTTATAATAATTA
1 TATAG-TT-T-ATAA-TA
2439079 TATAGTTTATAATA
1 TATAGTTTATAATA
2439093 TA
1 TA
2439095 AATATAGTTT
Statistics
Matches: 138, Mismatches: 19, Indels: 47
0.68 0.09 0.23
Matches are distributed among these distances:
12 1 0.01
13 41 0.30
14 9 0.07
15 44 0.32
16 10 0.07
17 10 0.07
18 23 0.17
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (14 bp):
TATAGTTTATAATA
Found at i:2438932 original size:13 final size:13
Alignment explanation
Indices: 2438901--2438940 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
2438891 TATACTTTTT
*
2438901 ATAGTTTATACATAT
1 ATAGTTTAT--ATAC
2438916 ATAGTTTATATAC
1 ATAGTTTATATAC
2438929 ATAGTTTATATA
1 ATAGTTTATATA
2438941 TATATAGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 15 0.62
15 9 0.38
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (13 bp):
ATAGTTTATATAC
Found at i:2439024 original size:13 final size:13
Alignment explanation
Indices: 2439008--2439032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2438998 TAATATAAAT
2439008 ATAGTTTATATAC
1 ATAGTTTATATAC
2439021 ATAGTTTATATA
1 ATAGTTTATATA
2439033 TATAATTCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (13 bp):
ATAGTTTATATAC
Found at i:2439099 original size:18 final size:18
Alignment explanation
Indices: 2439060--2439113 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
2439050 TAATTTATGT
* *
2439060 ATATAGCTTATAATA-ATT
1 ATATAGTTTATAATATA-A
2439078 ATATAGTTTATAATATAA
1 ATATAGTTTATAATATAA
2439096 ATATAGTTTAT-ATATAA
1 ATATAGTTTATAATATAA
2439113 A
1 A
2439114 CTTATATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 7 0.21
18 25 0.76
19 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (18 bp):
ATATAGTTTATAATATAA
Found at i:2439111 original size:2 final size:2
Alignment explanation
Indices: 2439086--2439147 Score: 58
Period size: 2 Copynumber: 31.5 Consensus size: 2
2439076 TTATATAGTT
* * *
2439086 TA TA -A TA TA AA TA TA GTT TA TA TA TA AA CT- TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA
2439127 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
2439148 TAATTTTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
1 3 0.06
2 45 0.92
3 1 0.02
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2439111 original size:92 final size:92
Alignment explanation
Indices: 2438914--2439109 Score: 360
Period size: 90 Copynumber: 2.2 Consensus size: 92
2438904 GTTTATACAT
2438914 ATATAGTTTATATACATAGTTTATATATATATAGTTCACATAAACATAATTTATATATATAACTT
1 ATATAGTTTATATACATAGTTTATATATATATAGTTCACATAAACATAATTTATATATATAACTT
2438979 ATAATAATTATATAGTTTATAATATAA
66 ATAATAATTATATAGTTTATAATATAA
* *
2439006 ATATAGTTTATATACATAGTTTATATATATA-A-TTCACATAAACATAATTTATGTATATAGCTT
1 ATATAGTTTATATACATAGTTTATATATATATAGTTCACATAAACATAATTTATATATATAACTT
2439069 ATAATAATTATATAGTTTATAATATAA
66 ATAATAATTATATAGTTTATAATATAA
2439096 ATATAGTTTATATA
1 ATATAGTTTATATA
2439110 TAAACTTATA
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 70 0.69
91 1 0.01
92 31 0.30
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (92 bp):
ATATAGTTTATATACATAGTTTATATATATATAGTTCACATAAACATAATTTATATATATAACTT
ATAATAATTATATAGTTTATAATATAA
Found at i:2439128 original size:21 final size:19
Alignment explanation
Indices: 2439068--2439147 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
2439058 GTATATAGCT
*
2439068 TATA-ATAATTATATAGTT-
1 TATATATAAATATATA-TTA
2439086 TATAATATAAATATAGT-TTA
1 TAT-ATATAAATATA-TATTA
*
2439106 TATATA-AACTTATATATTA
1 TATATATAA-ATATATATTA
*
2439125 TATATATATATATATA-TA
1 TATATATAAATATATATTA
2439143 TATAT
1 TATAT
2439148 TAATTTTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
18 13 0.25
19 25 0.49
20 12 0.24
21 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (19 bp):
TATATATAAATATATATTA
Found at i:2439142 original size:23 final size:23
Alignment explanation
Indices: 2439068--2439145 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 23
2439058 GTATATAGCT
*
2439068 TATA-ATA-ATTATATAGTTTATAA
1 TATATATATATTATATA-TATAT-A
*
2439091 TATAAATATAGTT-TATATATA-A
1 TATATATATA-TTATATATATATA
2439113 -ACT-TATATATTATATATATATA
1 TA-TATATATATTATATATATATA
2439135 TATATATATAT
1 TATATATATAT
2439146 ATTAATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 16
0.71 0.03 0.25
Matches are distributed among these distances:
20 2 0.04
21 14 0.31
22 4 0.09
23 12 0.27
24 6 0.13
25 5 0.11
26 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATATATTATATATATATA
Found at i:2440079 original size:14 final size:14
Alignment explanation
Indices: 2440060--2440086 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2440050 AATAATCGAC
2440060 ATGTAGAATATTTA
1 ATGTAGAATATTTA
2440074 ATGTAGAATATTT
1 ATGTAGAATATTT
2440087 TCCTATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (14 bp):
ATGTAGAATATTTA
Found at i:2446030 original size:30 final size:29
Alignment explanation
Indices: 2445990--2446054 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 29
2445980 ATAGATTCCA
2445990 AAAT-AAAAACCCGGGTGCCCTAATGGGC
1 AAATAAAAAACCCGGGTGCCCTAATGGGC
* *
2446018 TAAATAAAAAACCCGGTTGTCCTAATGGGC
1 -AAATAAAAAACCCGGGTGCCCTAATGGGC
2446048 AAA-AAAA
1 AAATAAAA
2446055 TCCAATAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 4 0.12
29 7 0.21
30 22 0.67
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (29 bp):
AAATAAAAAACCCGGGTGCCCTAATGGGC
Found at i:2448246 original size:37 final size:37
Alignment explanation
Indices: 2448205--2448298 Score: 118
Period size: 37 Copynumber: 2.5 Consensus size: 37
2448195 GGATCTTATC
* *
2448205 TTTAGGAGTTT-AAATCATAGTAGAACTCTATCATATT
1 TTTAGGAGTTTGAAATC-TAGCAAAACTCTATCATATT
* * *
2448242 TTTAGGAGTTTGAATTCTAGCAAAATTCTATCCTATT
1 TTTAGGAGTTTGAAATCTAGCAAAACTCTATCATATT
*
2448279 TTTAGGAGTTTGAATTCTAG
1 TTTAGGAGTTTGAAATCTAG
2448299 TATGACGAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.43
Consensus pattern (37 bp):
TTTAGGAGTTTGAAATCTAGCAAAACTCTATCATATT
Found at i:2449324 original size:106 final size:106
Alignment explanation
Indices: 2448999--2450469 Score: 2077
Period size: 106 Copynumber: 14.0 Consensus size: 106
2448989 GCATTGTTCC
* ** *
2448999 GAGTCCAATATCC-TCTG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGAC
1 GAGTCCAATATCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGAC
* * *
2449062 AACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
64 AACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
2449105 TAGTCCAATATTCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * * * * *
2449164 TCAGCCGCCCCTTCATCGTGAAGTTGAGCTTGTGTTGCCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * *
2449206 G-GTTCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
2449270 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
2449311 GAGTCCAATATCCTTCGCTGTGAAAGGTGAAATTGGCTCTAAAATTGAGAAG-T-TAT-TTGACA
1 GAGTCCAATATCCTTCGCTGTG-AAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
2449373 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
2449415 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
2449480 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
2449521 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAAATGGGAAATTGTTTGTT-----
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
2449581 ---G-GGTCCCTTCGTCGTGAAGTTTAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** *
2449618 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
2449683 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
2449724 GAGTCCAAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
2449789 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
2449830 GAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGGCAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
2449895 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** * * *
2449936 GAGTCCAATATCCTTCATTATGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
2450001 CCAGCGGTCCCTTCGTCGTGAAATTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
2450042 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
2450107 CCAGCGGTCCCTTCGTCATAAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
2450148 GAGTCCAATATCCTTCGCTGTGAATTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
2450213 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
2450254 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
2450319 CCAGTGGTCCCTTCGTCATGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
2450360 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAATTTGGGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * * *
2450425 CCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
2450466 GAGT
1 GAGT
2450470 GGCACGATAT
Statistics
Matches: 1227, Mismatches: 114, Indels: 48
0.88 0.08 0.03
Matches are distributed among these distances:
97 86 0.07
98 1 0.00
99 1 0.00
100 75 0.06
101 4 0.00
102 4 0.00
103 25 0.02
104 72 0.06
105 10 0.01
106 920 0.75
107 29 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:2451210 original size:24 final size:24
Alignment explanation
Indices: 2451182--2451247 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
2451172 AATATCAATA
*
2451182 AAGAGTTTCGAAAGATGTTTAATC
1 AAGAGTTTTGAAAGATGTTTAATC
*
2451206 AAGAGTTTTGAAAGATGTTTAATT
1 AAGAGTTTTGAAAGATGTTTAATC
*
2451230 AAAAGTTTTGAAA-ATGTT
1 AAGAGTTTTGAAAGATGTT
2451248 GTCCCTTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 5 0.13
24 34 0.87
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (24 bp):
AAGAGTTTTGAAAGATGTTTAATC
Found at i:2451463 original size:22 final size:21
Alignment explanation
Indices: 2451437--2451488 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 21
2451427 TGTTTGGTCA
2451437 AAGGTTTGGCATTTGATGCTC
1 AAGGTTTGGCATTTGATGCTC
2451458 ATAGGTTTGGCATTTGATGCTC
1 A-AGGTTTGGCATTTGATGCTC
2451480 AATGGTTTG
1 AA-GGTTTG
2451489 ATGGGGTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.19, C:0.12, G:0.29, T:0.40
Consensus pattern (21 bp):
AAGGTTTGGCATTTGATGCTC
Found at i:2452131 original size:11 final size:10
Alignment explanation
Indices: 2452109--2452179 Score: 61
Period size: 12 Copynumber: 6.4 Consensus size: 10
2452099 TTCTTTTTGA
*
2452109 TTTTTGTTCT
1 TTTTTTTTCT
2452119 TTATTTTTTCTT
1 TT-TTTTTTC-T
2452131 TTGTTTTCTTCT
1 TT-TTTT-TTCT
*
2452143 TTTTTGCTTCTT
1 TTTTT-TTTC-T
2452155 TTCTTTTTTCT
1 TT-TTTTTTCT
2452166 TTTTTTTTCT
1 TTTTTTTTCT
2452176 TTTT
1 TTTT
2452180 GTTCTGATTG
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
10 14 0.27
11 15 0.29
12 16 0.31
13 6 0.12
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:2452147 original size:10 final size:10
Alignment explanation
Indices: 2452122--2452179 Score: 55
Period size: 10 Copynumber: 5.5 Consensus size: 10
2452112 TTGTTCTTTA
2452122 TTTTTTCTT-
1 TTTTTTCTTC
2452131 TTGTTTTCTTC
1 TT-TTTTCTTC
2452142 TTTTTTGCTTC
1 TTTTTT-CTTC
*
2452153 TTTTCTTTTTTC
1 -TTT-TTTCTTC
*
2452165 TTTTTTTTTC
1 TTTTTTCTTC
2452175 TTTTT
1 TTTTT
2452180 GTTCTGATTG
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
9 2 0.05
10 23 0.53
11 9 0.21
12 6 0.14
13 3 0.07
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (10 bp):
TTTTTTCTTC
Found at i:2452160 original size:16 final size:16
Alignment explanation
Indices: 2452139--2452184 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
2452129 TTTTGTTTTC
2452139 TTCTTTTTTGCTTCTT
1 TTCTTTTTTGCTTCTT
*
2452155 TTCTTTTTT-CTTTTT
1 TTCTTTTTTGCTTCTT
*
2452170 TTTTCTTTTTG-TTCT
1 TTCT-TTTTTGCTTCT
2452185 GATTGAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.80
Consensus pattern (16 bp):
TTCTTTTTTGCTTCTT
Found at i:2452174 original size:36 final size:34
Alignment explanation
Indices: 2452109--2452176 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 34
2452099 TTCTTTTTGA
2452109 TTTTTGTTCTTTATTTTTTCTTTTGTTTTCTTCT
1 TTTTTGTTCTTTATTTTTTCTTTTGTTTTCTTCT
* *
2452143 TTTTTGCTTCTTTTCTTTTTTCTTTTTTTTTCTT
1 TTTTTG-TTC-TTTATTTTTTCTTTTGTTTTCTT
2452177 TTTGTTCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 6 0.20
35 3 0.10
36 21 0.70
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.81
Consensus pattern (34 bp):
TTTTTGTTCTTTATTTTTTCTTTTGTTTTCTTCT
Found at i:2456959 original size:2 final size:2
Alignment explanation
Indices: 2456946--2456996 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
2456936 AAAATAGGAA
*
2456946 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2456988 AT AT AT AT A
1 AT AT AT AT A
2456997 ACACTAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2457453 original size:37 final size:37
Alignment explanation
Indices: 2457407--2457491 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
2457397 GGATCTTATC
** *
2457407 TTTAGGAGTTTAAATCATAGTAGAACTCTATCATATT
1 TTTAGGAGTTTAAATCATAACAAAACTCTATCATATT
* * * * *
2457444 TTTAAGAGTTTGAATCCTAACAAAATTCTATCCTATT
1 TTTAGGAGTTTAAATCATAACAAAACTCTATCATATT
2457481 TTTAGGAGTTT
1 TTTAGGAGTTT
2457492 GAATTCTAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (37 bp):
TTTAGGAGTTTAAATCATAACAAAACTCTATCATATT
Found at i:2460328 original size:31 final size:31
Alignment explanation
Indices: 2460286--2460377 Score: 123
Period size: 31 Copynumber: 2.9 Consensus size: 31
2460276 TCGACAATTG
* *
2460286 TCCATAGGTCCCGAAGAACCTAGGTAAACTA
1 TCCATATGTCCCGAAGAACATAGGTAAACTA
* *
2460317 TCCATATGTCCCGTAGAACATAGGTAAATTA
1 TCCATATGTCCCGAAGAACATAGGTAAACTA
2460348 TCCATATGTCCTCGAA-AGACATAGGTAAAC
1 TCCATATGTCC-CGAAGA-ACATAGGTAAAC
2460378 CCTCGACTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
31 39 0.74
32 14 0.26
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (31 bp):
TCCATATGTCCCGAAGAACATAGGTAAACTA
Found at i:2464244 original size:2 final size:2
Alignment explanation
Indices: 2464237--2464266 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2464227 ATTTGTTCTT
2464237 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2464267 AACACAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2465948 original size:18 final size:17
Alignment explanation
Indices: 2465899--2465953 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 17
2465889 TCTATATATA
2465899 TATATATTAAAAATGAAT
1 TATATATTAAAAAT-AAT
*
2465917 CATATATTAAAAAAATAATT
1 TATATATT--AAAAATAA-T
2465937 TATATATTAAAATATAA
1 TATATATTAAAA-ATAA
2465954 ATGCATAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 11 0.35
19 6 0.19
20 14 0.45
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (17 bp):
TATATATTAAAAATAAT
Found at i:2467343 original size:20 final size:20
Alignment explanation
Indices: 2467318--2467357 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
2467308 TTCCCCAAGG
2467318 TCGCATGAAACACCATGCGA
1 TCGCATGAAACACCATGCGA
2467338 TCGCATGAAACACCATGCGA
1 TCGCATGAAACACCATGCGA
2467358 CTCCCTCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.30, G:0.20, T:0.15
Consensus pattern (20 bp):
TCGCATGAAACACCATGCGA
Found at i:2468579 original size:31 final size:31
Alignment explanation
Indices: 2468544--2468607 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
2468534 ATGGATTTTA
* *
2468544 TTTGTTATTATTTAAGAA-GTGTTGGTTATAT
1 TTTGTCATTATTTAA-AACGAGTTGGTTATAT
*
2468575 TTTGTCATTATTTAAAACGAGTTTGTTATAT
1 TTTGTCATTATTTAAAACGAGTTGGTTATAT
2468606 TT
1 TT
2468608 CCTTAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.27, C:0.03, G:0.16, T:0.55
Consensus pattern (31 bp):
TTTGTCATTATTTAAAACGAGTTGGTTATAT
Found at i:2489769 original size:21 final size:20
Alignment explanation
Indices: 2489743--2489784 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
2489733 TAAATAGGGT
*
2489743 AGTATCGATACCTCCTTAAAC
1 AGTATCGATACC-CCTCAAAC
2489764 AGTATCGATACCCCTCAAAC
1 AGTATCGATACCCCTCAAAC
2489784 A
1 A
2489785 TCGAATGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.36, C:0.31, G:0.10, T:0.24
Consensus pattern (20 bp):
AGTATCGATACCCCTCAAAC
Found at i:2497587 original size:21 final size:21
Alignment explanation
Indices: 2497561--2497600 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2497551 CCCCCTTTGA
*
2497561 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
2497582 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
2497601 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:2505820 original size:18 final size:18
Alignment explanation
Indices: 2505797--2505831 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2505787 AATAAAAAAA
2505797 TGTTTTT-ATTTTAATTAG
1 TGTTTTTGA-TTTAATTAG
2505815 TGTTTTTGATTTAATTA
1 TGTTTTTGATTTAATTA
2505832 TATTGTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (18 bp):
TGTTTTTGATTTAATTAG
Found at i:2507308 original size:17 final size:17
Alignment explanation
Indices: 2507264--2507308 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
2507254 ATTTTGATGG
2507264 ATTTATGTGT-TTTGGAT
1 ATTT-TGTGTGTTTGGAT
*
2507281 ATTTGGT-TGTTTGGAT
1 ATTTTGTGTGTTTGGAT
2507297 ATTTTGTGTGTT
1 ATTTTGTGTGTT
2507309 GAATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 1 0.04
16 15 0.62
17 8 0.33
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (17 bp):
ATTTTGTGTGTTTGGAT
Found at i:2507569 original size:14 final size:14
Alignment explanation
Indices: 2507547--2507590 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
2507537 ACAAAAAAGG
*
2507547 GGAGAATATAGTAA
1 GGAGGATATAGTAA
2507561 GGAGGATATAGTAA
1 GGAGGATATAGTAA
*
2507575 GGGGGATATAGTAA
1 GGAGGATATAGTAA
2507589 GG
1 GG
2507591 GGAGTAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (14 bp):
GGAGGATATAGTAA
Found at i:2507591 original size:14 final size:14
Alignment explanation
Indices: 2507552--2507592 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
2507542 AAAGGGGAGA
*
2507552 ATATAGTAAGGAGG
1 ATATAGTAAGGGGG
2507566 ATATAGTAAGGGGG
1 ATATAGTAAGGGGG
2507580 ATATAGTAAGGGG
1 ATATAGTAAGGGG
2507593 AGTAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (14 bp):
ATATAGTAAGGGGG
Found at i:2507964 original size:20 final size:21
Alignment explanation
Indices: 2507923--2507964 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
2507913 TAAATAGGGT
*
2507923 AGTATCGATACCTCCTTAAAC
1 AGTATCGATACCTCCCTAAAC
2507944 AGTATCGATACC-CCCTAAAC
1 AGTATCGATACCTCCCTAAAC
2507964 A
1 A
2507965 TCGAATGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.36, C:0.31, G:0.10, T:0.24
Consensus pattern (21 bp):
AGTATCGATACCTCCCTAAAC
Found at i:2509057 original size:21 final size:20
Alignment explanation
Indices: 2509029--2509084 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
2509019 ATTTGATATG
2509029 AACATGAATAAATGTGATGTT
1 AACATGAA-AAATGTGATGTT
* *
2509050 AACCTGAAAAGTTGTGATGTT
1 AACATGAAAA-ATGTGATGTT
2509071 AACATGAAGAAATG
1 AACATGAA-AAATG
2509085 CAAATTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (20 bp):
AACATGAAAAATGTGATGTT
Found at i:2511002 original size:5 final size:5
Alignment explanation
Indices: 2510959--2510986 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
2510949 AGACTAATTA
2510959 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
2510987 GATATAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:2511161 original size:23 final size:23
Alignment explanation
Indices: 2511117--2511161 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2511107 TATTTAGATG
* *
2511117 TAATTTTTTTAAGTCTAAATTAT
1 TAATTATTTTAAATCTAAATTAT
2511140 TAATTATTTTAAAT-TAAGATTA
1 TAATTATTTTAAATCTAA-ATTA
2511162 AATTGAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (23 bp):
TAATTATTTTAAATCTAAATTAT
Found at i:2511448 original size:2 final size:2
Alignment explanation
Indices: 2511441--2511521 Score: 162
Period size: 2 Copynumber: 40.5 Consensus size: 2
2511431 TGCATTTACC
2511441 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
2511483 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
2511522 ACGCGCGCAC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:2522299 original size:12 final size:12
Alignment explanation
Indices: 2522282--2522306 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2522272 ACAAAGCACC
2522282 ATTTGGTGCCTA
1 ATTTGGTGCCTA
2522294 ATTTGGTGCCTA
1 ATTTGGTGCCTA
2522306 A
1 A
2522307 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:2535563 original size:43 final size:43
Alignment explanation
Indices: 2535502--2535621 Score: 168
Period size: 46 Copynumber: 2.7 Consensus size: 43
2535492 TAAAAAAAAT
* *
2535502 CAAAAATACCCATGTGTTTCTTCTTCTTCTTTGTGAAGATGTC
1 CAAAAACACCCACGTGTTTCTTCTTCTTCTTTGTGAAGATGTC
* *
2535545 CAAAAACACCCACATGTTTCTTCTTCTTCTTCTTTGTGGAGATGTC
1 CAAAAACACCCAC--GTGT-TTCTTCTTCTTCTTTGTGAAGATGTC
*
2535591 CAAAAACACCCACGTGTTTCTTCTTCCTCTT
1 CAAAAACACCCACGTGTTTCTTCTTCTTCTT
2535622 CTTCTTTTTC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 24 0.35
44 3 0.04
45 3 0.04
46 38 0.56
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.39
Consensus pattern (43 bp):
CAAAAACACCCACGTGTTTCTTCTTCTTCTTTGTGAAGATGTC
Found at i:2535588 original size:46 final size:46
Alignment explanation
Indices: 2535519--2535624 Score: 185
Period size: 46 Copynumber: 2.3 Consensus size: 46
2535509 ACCCATGTGT
2535519 TTCTTCTTCTTCTTTGTGAAGATGTCCAAAAACACCCACATGTTTC
1 TTCTTCTTCTTCTTTGTGAAGATGTCCAAAAACACCCACATGTTTC
* *
2535565 TTCTTCTTCTTCTTTGTGGAGATGTCCAAAAACACCCACGTGTTTC
1 TTCTTCTTCTTCTTTGTGAAGATGTCCAAAAACACCCACATGTTTC
*
2535611 TTCTTCCTCTTCTT
1 TTCTTCTTCTTCTT
2535625 CTTTTTCTTC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.42
Consensus pattern (46 bp):
TTCTTCTTCTTCTTTGTGAAGATGTCCAAAAACACCCACATGTTTC
Found at i:2535640 original size:12 final size:12
Alignment explanation
Indices: 2535608--2535642 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2535598 ACCCACGTGT
*
2535608 TTCTTCTTCCTC
1 TTCTTCTTTCTC
*
2535620 TTCTTCTTTTTC
1 TTCTTCTTTCTC
2535632 TTCTTCTTTCT
1 TTCTTCTTTCT
2535643 TTGTGGAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TTCTTCTTTCTC
Found at i:2536140 original size:3 final size:3
Alignment explanation
Indices: 2536134--2536224 Score: 182
Period size: 3 Copynumber: 30.3 Consensus size: 3
2536124 CTCCTCCTAC
2536134 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
2536182 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
2536225 GTTGCACATT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 88 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:2537053 original size:2 final size:2
Alignment explanation
Indices: 2537046--2537073 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2537036 TTATTATTTA
2537046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2537074 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2537122 original size:17 final size:17
Alignment explanation
Indices: 2537100--2537133 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
2537090 TTTATGTGAC
2537100 TAATATGAAAA-TAATAA
1 TAATAT-AAAAGTAATAA
2537117 TAATATAAAAGTAATAA
1 TAATATAAAAGTAATAA
2537134 CAAATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAATATAAAAGTAATAA
Found at i:2537158 original size:16 final size:16
Alignment explanation
Indices: 2537139--2537171 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2537129 AATAACAAAT
2537139 TAATA-TTATAAATAAA
1 TAATATTTA-AAATAAA
2537155 TAATATTTAAAATAAA
1 TAATATTTAAAATAAA
2537171 T
1 T
2537172 TTAAAAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:2538500 original size:3 final size:3
Alignment explanation
Indices: 2538388--2538482 Score: 145
Period size: 3 Copynumber: 30.3 Consensus size: 3
2538378 GTCTTGTAAT
2538388 TAA TAA TAAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
2538435 TAA TAA TAAA TAA TAT TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
2538482 T
1 T
2538483 TTTAATTTTA
Statistics
Matches: 86, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
3 74 0.86
4 12 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2538649 original size:76 final size:76
Alignment explanation
Indices: 2538557--2538738 Score: 355
Period size: 76 Copynumber: 2.4 Consensus size: 76
2538547 GAGGTCTTAA
2538557 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
2538622 AGGCTTTTTGG
66 AGGCTTTTTGG
2538633 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
2538698 AGGCTTTTTGG
66 AGGCTTTTTGG
*
2538709 AAACATTATGCACTGCAGGACTTACAGATG
1 AAACATCATGCACTGCAGGACTTACAGATG
2538739 TAGGAAATAG
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 105 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (76 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:2538994 original size:76 final size:76
Alignment explanation
Indices: 2538868--2539076 Score: 366
Period size: 76 Copynumber: 2.8 Consensus size: 76
2538858 AAATAACAAT
* *
2538868 ATCAAAAAGCTCCCGAAGGCGTTTTATAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTAGAAACATCATGCACTGCAGGACTTACAGATGACCCTAA-
2538933 GT-TTTGAAAAC
65 GTCTTTGAAAAC
*
2538944 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTAGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
2539009 TCTTTGAAAAC
66 TCTTTGAAAAC
*
2539020 ATCAAAAAGCTCCCGAAGGCTTTTTAGAAACATTATGCACTGCAGGACTTACAGATG
1 ATCAAAAAGCTCCCGAAGGCTTTTTAGAAACATCATGCACTGCAGGACTTACAGATG
2539077 TAGGAAATAG
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
75 2 0.02
76 125 0.98
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (76 bp):
ATCAAAAAGCTCCCGAAGGCTTTTTAGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
TCTTTGAAAAC
Found at i:2539300 original size:339 final size:338
Alignment explanation
Indices: 2538557--2539415 Score: 1614
Period size: 339 Copynumber: 2.5 Consensus size: 338
2538547 GAGGTCTTAA
*
2538557 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
2538622 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
2538687 AAAGCTCCCGAAGGCTTTTTGGAAACATTATGCACTGCAGGACTTACAGATGTAGGAAATAGTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATTATGCACTGCAGGACTTACAGATGTAGGAAATAGTTT
2538752 AATAAGTAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTTAGAAAAGATA
196 AATAAGTAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTTAGAAAAGATA
2538817 AAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTTCAAAATAACAATATCAAAAAGCTCCC
261 AAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTTCAAAATAACAATATCAAAAAGCTCCC
*
2538882 GAAGGCGTTTTAT
326 GAAGGCGTTTTAG
2538895 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
*
2538960 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGTCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
2539025 AAAGCTCCCGAAGGCTTTTTAGAAACATTATGCACTGCAGGACTTACAGATGTAGGAAATAGTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATTATGCACTGCAGGACTTACAGATGTAGGAAATAGTTT
2539090 AATAAGTAAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCA-TTTTAGAAAAGAT
196 AATAAGT-AAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTTAGAAAAGAT
2539154 AAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTTCAAAATAACAATATCAAAAAGCTC
260 -AAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTTCAAAATAACAATATCAAAAAGCTC
2539219 CCGAAGGC-TTTTCAG
324 CCGAAGGCGTTTT-AG
* *
2539234 AAACATCATGCACTGCAAGACTTACAAATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
2539299 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
2539364 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATG
131 AAAGCTCCCGAAGGCTTTTTGGAAACATTATGCACTGCAGGACTTACAGATG
2539416 ACCCTAAGGT
Statistics
Matches: 509, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
338 216 0.42
339 293 0.58
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (338 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTTGGAAACATTATGCACTGCAGGACTTACAGATGTAGGAAATAGTTT
AATAAGTAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTTAGAAAAGATA
AAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTTCAAAATAACAATATCAAAAAGCTCCC
GAAGGCGTTTTAG
Found at i:2539670 original size:76 final size:76
Alignment explanation
Indices: 2539207--2539643 Score: 766
Period size: 76 Copynumber: 5.8 Consensus size: 76
2539197 AAATAACAAT
** * *
2539207 ATCAAAAAGCTCCCGAAGGCTTTTCAGAAACATCATGCACTGCAAGACTTACAAATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
*
2539272 GTTTTGAAAAC
66 GCTTTGAAAAC
2539283 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
2539348 GCTTTGAAAAC
66 GCTTTGAAAAC
2539359 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
* *
2539424 GTTTTGAAAAT
66 GCTTTGAAAAC
2539435 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
2539500 GCTTTGAAAAC
66 GCTTTGAAAAC
* * * *
2539511 ATCAAAAATCTCCCAAAGGCTTTTTGAAAACATCATGCACTACAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
2539576 GCTTTGAAAAC
66 GCTTTGAAAAC
*
2539587 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATG
2539644 TAGGAAATAG
Statistics
Matches: 343, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 343 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (76 bp):
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
GCTTTGAAAAC
Found at i:2540815 original size:40 final size:40
Alignment explanation
Indices: 2540759--2540848 Score: 153
Period size: 40 Copynumber: 2.2 Consensus size: 40
2540749 TTTCCTGTGG
*
2540759 TTTCTGTCGAGATGTAAAACACTTGACAACACATTCATCCT
1 TTTCTGT-GGGATGTAAAACACTTGACAACACATTCATCCT
*
2540800 TTTCTGTGGGATGTAAAACACTTGACAACACATTTATCCT
1 TTTCTGTGGGATGTAAAACACTTGACAACACATTCATCCT
2540840 TTTCTGTGG
1 TTTCTGTGG
2540849 CTTCTACTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 40 0.85
41 7 0.15
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (40 bp):
TTTCTGTGGGATGTAAAACACTTGACAACACATTCATCCT
Found at i:2545175 original size:26 final size:25
Alignment explanation
Indices: 2545135--2545185 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
2545125 TTTTTTTTCC
2545135 TTTTTTTTTTCTTTCTTTGCTGGAT
1 TTTTTTTTTTCTTTCTTTGCTGGAT
*
2545160 TTTTCTTTTTTCTTTCTTTGTTGGAT
1 TTTT-TTTTTTCTTTCTTTGCTGGAT
2545186 GAGTATAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.04, C:0.12, G:0.12, T:0.73
Consensus pattern (25 bp):
TTTTTTTTTTCTTTCTTTGCTGGAT
Found at i:2550422 original size:15 final size:17
Alignment explanation
Indices: 2550393--2550426 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
2550383 CTCTAATAGA
2550393 AAAATAAAATAATTAAT
1 AAAATAAAATAATTAAT
2550410 AAAA-AAAAT-ATTAAT
1 AAAATAAAATAATTAAT
2550425 AA
1 AA
2550427 TAAGTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 5 0.29
17 4 0.24
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAAAATAATTAAT
Found at i:2550425 original size:22 final size:22
Alignment explanation
Indices: 2550386--2550441 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
2550376 TTCAAACCTC
2550386 TAATAGAAAAATAAAATAATTAA-
1 TAATA-AAAAATAAAATAA-TAAG
*
2550409 TAA-AAAAAATATTAATAATAAG
1 TAATAAAAAATA-AAATAATAAG
2550431 TAATAAAAAAT
1 TAATAAAAAAT
2550442 TTGAAAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 10 0.34
22 9 0.31
23 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.27
Consensus pattern (22 bp):
TAATAAAAAATAAAATAATAAG
Found at i:2551216 original size:8 final size:8
Alignment explanation
Indices: 2551189--2551231 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
2551179 TTATTTAAAA
*
2551189 TATATATA
1 TATATATT
* *
2551197 TATAAATA
1 TATATATT
2551205 TATATATT
1 TATATATT
2551213 TATATATT
1 TATATATT
*
2551221 TATTTATT
1 TATATATT
2551229 TAT
1 TAT
2551232 GTGACTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATATATT
Found at i:2551217 original size:12 final size:12
Alignment explanation
Indices: 2551189--2551227 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
2551179 TTATTTAAAA
*
2551189 TATATATATATA
1 TATATATATATT
*
2551201 AATATATATATT
1 TATATATATATT
*
2551213 TATATATTTATT
1 TATATATATATT
2551225 TAT
1 TAT
2551228 TTATGTGACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATATATATATT
Found at i:2551259 original size:17 final size:17
Alignment explanation
Indices: 2551237--2551270 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
2551227 TTTATGTGAC
2551237 TAATATGAAAA-TAATAA
1 TAATAT-AAAATTAATAA
2551254 TAATATAAAATTAATAA
1 TAATATAAAATTAATAA
2551271 CAAATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATATAAAATTAATAA
Found at i:2551295 original size:16 final size:16
Alignment explanation
Indices: 2551276--2551308 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2551266 AATAACAAAT
2551276 TAATA-TTATAAATAAA
1 TAATATTTA-AAATAAA
2551292 TAATATTTAAAATAAA
1 TAATATTTAAAATAAA
2551308 T
1 T
2551309 TTAAAAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:2552551 original size:3 final size:3
Alignment explanation
Indices: 2552543--2552592 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
2552533 GGCTTGTAAT
* **
2552543 TAA TAA TAAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TTT TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2552589 TAA T
1 TAA T
2552593 TTAAGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:2555479 original size:21 final size:21
Alignment explanation
Indices: 2555450--2555494 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2555440 AATCTTAGTT
2555450 ATTAATTAAT-TTTAATTTAAA
1 ATTAATTAATATTT-ATTTAAA
* *
2555471 ATTAGTTAATATTTTTTTAAA
1 ATTAATTAATATTTATTTAAA
2555492 ATT
1 ATT
2555495 TTCTTAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTAATTAATATTTATTTAAA
Found at i:2558504 original size:36 final size:36
Alignment explanation
Indices: 2558459--2558537 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
2558449 GAAACAAAGG
* * * *
2558459 CTTTCGAGTTCTCGATGACATAAGGCATATGGCTGC
1 CTTTCGAGTTCTCGAGGACACAAGGCATATAGCCGC
**
2558495 CTTTCGAGTTCTCGAGGAGGCAAGGCATATAGCCGC
1 CTTTCGAGTTCTCGAGGACACAAGGCATATAGCCGC
2558531 CTTTCGA
1 CTTTCGA
2558538 TATCTCCCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (36 bp):
CTTTCGAGTTCTCGAGGACACAAGGCATATAGCCGC
Found at i:2563307 original size:46 final size:49
Alignment explanation
Indices: 2563233--2563323 Score: 127
Period size: 46 Copynumber: 1.9 Consensus size: 49
2563223 TTTTCTTTTC
* *
2563233 TTTTTCCTGAACAAATGCATGCGAACTAGAAATCATGCA-GTTAGGTTAA
1 TTTTTCCTAAACAAATGCATGCGAACTAGAAAGCATG-AGGTTAGGTTAA
2563282 TTTTTCC-AAACAAA-GCATG-GAACTAGAAAGCATGAGGTTAGG
1 TTTTTCCTAAACAAATGCATGCGAACTAGAAAGCATGAGGTTAGG
2563324 ATACATTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
45 1 0.03
46 20 0.51
47 5 0.13
48 6 0.15
49 7 0.18
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (49 bp):
TTTTTCCTAAACAAATGCATGCGAACTAGAAAGCATGAGGTTAGGTTAA
Found at i:2565043 original size:19 final size:19
Alignment explanation
Indices: 2565019--2565055 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2565009 TTTTCATACA
*
2565019 TGCATTTATATTTTGTATG
1 TGCATTTACATTTTGTATG
*
2565038 TGCATTTCCATTTTGTAT
1 TGCATTTACATTTTGTAT
2565056 TCTTAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.11, G:0.14, T:0.57
Consensus pattern (19 bp):
TGCATTTACATTTTGTATG
Found at i:2565078 original size:36 final size:36
Alignment explanation
Indices: 2565038--2565129 Score: 91
Period size: 36 Copynumber: 2.6 Consensus size: 36
2565028 ATTTTGTATG
* *
2565038 TGCATTTC-CATTTTGTATTCTTAATTTTTACATCTT-
1 TGCATTTCACAGTTTGCATTCTT-ATTTTTACAT-TTA
* *
2565074 TGCATTACACAGTTTGCATTCTTATTTTTGCATTTA
1 TGCATTTCACAGTTTGCATTCTTATTTTTACATTTA
*
2565110 TGCATTTTCACA-TTTACATT
1 TGCA-TTTCACAGTTTGCATT
2565130 ACATTTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
35 2 0.04
36 27 0.57
37 18 0.38
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (36 bp):
TGCATTTCACAGTTTGCATTCTTATTTTTACATTTA
Found at i:2567329 original size:2 final size:2
Alignment explanation
Indices: 2567322--2567365 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
2567312 TTATCCTTTA
2567322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2567364 AT
1 AT
2567366 CCTTTCCCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2567676 original size:11 final size:11
Alignment explanation
Indices: 2567654--2567696 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
2567644 CTCATCCAGC
*
2567654 AAAGAAAGAAG
1 AAAGAAAAAAG
*
2567665 AAGGAAAAAAG
1 AAAGAAAAAAG
2567676 AAAGAAAAAA-
1 AAAGAAAAAAG
2567686 AAAGAAGAAAA
1 AAAGAA-AAAA
2567697 AAAAACAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 6 0.21
11 22 0.79
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAG
Found at i:2567687 original size:13 final size:13
Alignment explanation
Indices: 2567658--2567701 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
2567648 TCCAGCAAAG
*
2567658 AAAGAAGAAGGAAA
1 AAAGAAGAA-AAAA
2567672 AAAGAAAGAAAAAA
1 AAAG-AAGAAAAAA
2567686 AAAGAAGAAAAAA
1 AAAGAAGAAAAAA
2567699 AAA
1 AAA
2567702 CAAAAGCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 12 0.43
14 11 0.39
15 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAAAAA
Found at i:2567700 original size:28 final size:30
Alignment explanation
Indices: 2567654--2567719 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 30
2567644 CTCATCCAGC
* *
2567654 AAAG-AAAGAAGAAGGAAAAAA-GAAAG-AA
1 AAAGAAAAGAAGAA-AAAAAAACAAAAGCAA
2567682 AAA-AAAAGAAGAAAAAAAAACAAAAGCAA
1 AAAGAAAAGAAGAAAAAAAAACAAAAGCAA
2567711 AAAGAAAAG
1 AAAGAAAAG
2567720 CAAAAAGGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 6 0.19
28 16 0.50
29 5 0.16
30 5 0.16
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (30 bp):
AAAGAAAAGAAGAAAAAAAAACAAAAGCAA
Found at i:2567712 original size:25 final size:26
Alignment explanation
Indices: 2567654--2567716 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
2567644 CTCATCCAGC
*
2567654 AAAGAAAGAAGAAGGAAAAAAGAAAGA
1 AAAGAAA-AAGAAGGAAAAAAGAAACA
2567681 AAA-AAAAAGAA-GAAAAAA-AAACA
1 AAAGAAAAAGAAGGAAAAAAGAAACA
2567704 AAAGCAAAAAGAA
1 AAAG-AAAAAGAA
2567717 AAGCAAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 7 0.21
24 7 0.21
25 13 0.39
26 3 0.09
27 3 0.09
ACGTcount: A:0.79, C:0.03, G:0.17, T:0.00
Consensus pattern (26 bp):
AAAGAAAAAGAAGGAAAAAAGAAACA
Found at i:2567718 original size:18 final size:18
Alignment explanation
Indices: 2567655--2567724 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
2567645 TCATCCAGCA
**
2567655 AAGAAAGAAGAAGGAAAA-
1 AAGAAAGAA-AAACAAAAG
2567673 AAGAAAGAAAAA-AAAAG
1 AAGAAAGAAAAACAAAAG
*
2567690 AAGAAAAAAAAACAAAAG
1 AAGAAAGAAAAACAAAAG
*
2567708 CAA-AAAGAAAAGCAAAA
1 -AAGAAAGAAAAACAAAA
2567725 AGGGAAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.09
17 13 0.29
18 26 0.58
19 2 0.04
ACGTcount: A:0.79, C:0.04, G:0.17, T:0.00
Consensus pattern (18 bp):
AAGAAAGAAAAACAAAAG
Found at i:2567726 original size:12 final size:12
Alignment explanation
Indices: 2567676--2567726 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
2567666 AGGAAAAAAG
2567676 AAAGAAAA--AA
1 AAAGAAAAGCAA
**
2567686 AAAGAAGAAAAAA
1 AAAGAA-AAGCAA
*
2567699 AAACAAAAGCAA
1 AAAGAAAAGCAA
2567711 AAAGAAAAGCAA
1 AAAGAAAAGCAA
2567723 AAAG
1 AAAG
2567727 GGAAAATTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 6 0.18
11 2 0.06
12 19 0.56
13 7 0.21
ACGTcount: A:0.80, C:0.06, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGCAA
Found at i:2572254 original size:54 final size:54
Alignment explanation
Indices: 2572172--2572329 Score: 218
Period size: 54 Copynumber: 3.0 Consensus size: 54
2572162 TGATTGAGAA
*
2572172 ATCTGAGCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGCTTTACGAAT
1 ATCTGAGCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACGAAT
*
2572226 ATCTGAGCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTAC----
1 ATCTGAGCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACGAAT
* * * *
2572276 ATCTGAGCAGAAACCACATG-AGATGATGCATGTGTTGTCAAATGTTTTACGAAT
1 ATCTGAGCAGAAGCCACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTACGAAT
2572330 CAGTTATTCT
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
50 43 0.47
51 1 0.01
54 48 0.52
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.27
Consensus pattern (54 bp):
ATCTGAGCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACGAAT
Found at i:2572725 original size:22 final size:22
Alignment explanation
Indices: 2572696--2572750 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
2572686 ATCTACACTC
*
2572696 TTCAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
2572718 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
2572740 TTCAAAGATGA
1 TTCAAAGATGA
2572751 AAGCTTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:2573549 original size:76 final size:76
Alignment explanation
Indices: 2573423--2574286 Score: 1525
Period size: 76 Copynumber: 11.4 Consensus size: 76
2573413 CTATTTCCCA
2573423 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573488 AGCCTTAGGGT
66 AGCCTTAGGGT
2573499 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573564 AGCCTTAGGGT
66 AGCCTTAGGGT
2573575 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573640 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2573651 CATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573716 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2573727 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTGGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573792 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2573803 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
2573868 A-CCTTCGGGT
66 AGCCTTAGGGT
* *
2573878 CATCTGTAAGTCCTACAGTGTATGATGTTTCCAAAAAACCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2573943 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2573954 CATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
2574019 A-CTTTCGGGT
66 AGCCTTAGGGT
** * *
2574029 CATCTGTAAGTCCTGTAGTGCATGATGTTTCTAAAAAGCCTTCGGGAGATTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2574094 AGCCTTAGGGT
66 AGCCTTAGGGT
* * * *
2574105 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAATCCTTCGAGAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2574170 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2574181 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATATTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
2574246 AACCTTAGGGT
66 AGCCTTAGGGT
* *
2574257 CATCTGTAAGCCCTTCAGTGCATGATGTTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTT
2574287 ACAACATTTC
Statistics
Matches: 752, Mismatches: 34, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
75 139 0.18
76 613 0.82
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:2574422 original size:3 final size:3
Alignment explanation
Indices: 2574416--2574464 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
2574406 TTCATCATAT
* * *
2574416 TTA TTA TTA TTA TTA TTA ATA TTA ATA TTA TTA TATA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
2574462 TTA
1 TTA
2574465 AATAAAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:2583039 original size:17 final size:17
Alignment explanation
Indices: 2583017--2583049 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
2583007 TAGAAATACA
2583017 ACCATCAATACGCTACG
1 ACCATCAATACGCTACG
2583034 ACCATCAATACGCTAC
1 ACCATCAATACGCTAC
2583050 AACAATACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.09, T:0.18
Consensus pattern (17 bp):
ACCATCAATACGCTACG
Found at i:2584487 original size:72 final size:72
Alignment explanation
Indices: 2584398--2584542 Score: 254
Period size: 72 Copynumber: 2.0 Consensus size: 72
2584388 ATTATACATT
* * *
2584398 TGAGCAGGATATACCTTATTGAACCGAAGATGCAACACAACAAATTTCTGTGGCTTTTTTTTGCC
1 TGAGCAGGATATACCTTATCGAACCAAAGATGCAACACAACAAATTTCTGTGGCTCTTTTTTGCC
2584463 ATATTGA
66 ATATTGA
*
2584470 TGAGCAGGATATACCTTATCGAACCAAAGATTCAACACAACAAATTTCTGTGGCTCTTTTTTGCC
1 TGAGCAGGATATACCTTATCGAACCAAAGATGCAACACAACAAATTTCTGTGGCTCTTTTTTGCC
2584535 ATATTGA
66 ATATTGA
2584542 T
1 T
2584543 CAGTGGTCTC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (72 bp):
TGAGCAGGATATACCTTATCGAACCAAAGATGCAACACAACAAATTTCTGTGGCTCTTTTTTGCC
ATATTGA
Found at i:2587147 original size:51 final size:50
Alignment explanation
Indices: 2587092--2587218 Score: 139
Period size: 51 Copynumber: 2.5 Consensus size: 50
2587082 TTAGTAGTAA
* * **
2587092 AGCGCGCTTCATGCACCGCGTTATACGATGATTTGACGCCACGTGGGGTAT
1 AGCGCGCCTCATGCACCGCGCTATACGATGAACTGACGCCACGT-GGGTAT
* * * *
2587143 AGCGCGCCTCCTGCGCCGCGCTATACGGTGAACTGGCGCCACGTGGGTAT
1 AGCGCGCCTCATGCACCGCGCTATACGATGAACTGACGCCACGTGGGTAT
* *
2587193 AGCGCGGCC-CCTGCAGCGCGCTATAC
1 AGCGC-GCCTCATGCACCGCGCTATAC
2587219 CTGTAATATC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 26 0.40
51 39 0.60
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (50 bp):
AGCGCGCCTCATGCACCGCGCTATACGATGAACTGACGCCACGTGGGTAT
Found at i:2587353 original size:10 final size:10
Alignment explanation
Indices: 2587338--2587377 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
2587328 TTTATCACAC
2587338 CAAATTCTCT
1 CAAATTCTCT
2587348 CAAATTCTCT
1 CAAATTCTCT
2587358 -AAATTTCTCT
1 CAAA-TTCTCT
*
2587368 CAAATACTCT
1 CAAATTCTCT
2587378 ATTTTTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.40
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:2589775 original size:26 final size:25
Alignment explanation
Indices: 2589746--2589819 Score: 64
Period size: 26 Copynumber: 2.9 Consensus size: 25
2589736 TTATATTTGT
2589746 TTTTACTTTATTTTGTTAAATTGTAA
1 TTTTACTTTATTTTGTTAAATT-TAA
* *
2589772 TTTT-TTTTATTATT-TCT-CATTTAA
1 TTTTACTTTATT-TTGT-TAAATTTAA
*
2589796 TACTTACTTTATTTTGTTAAATTT
1 T-TTTACTTTATTTTGTTAAATTT
2589820 GTTGAACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
24 4 0.11
25 15 0.41
26 18 0.49
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTACTTTATTTTGTTAAATTTAA
Found at i:2593544 original size:50 final size:50
Alignment explanation
Indices: 2593466--2593591 Score: 157
Period size: 50 Copynumber: 2.5 Consensus size: 50
2593456 CCCTACGTGG
* * **
2593466 CGTATAGCGCGCTGCAGGGGCCGTGCTATA-CCCACGTGGCACCAGCTCAC
1 CGTATAGCGCGGTGCAGGGG-CGCGCTATACCCCACGTGGCACCAAATCAC
*
2593516 CGTATAGCGCGGTGCAGGAGGCGCGCTATACCCCACGTGGCACCAAATCAT
1 CGTATAGCGCGGTGCAGG-GGCGCGCTATACCCCACGTGGCACCAAATCAC
* *
2593567 CGTATAGCAC-GTGCAGGGGTGCGCT
1 CGTATAGCGCGGTGCAGGGGCGCGCT
2593592 TTACTGCTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
49 7 0.10
50 32 0.48
51 28 0.42
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (50 bp):
CGTATAGCGCGGTGCAGGGGCGCGCTATACCCCACGTGGCACCAAATCAC
Found at i:2598939 original size:2 final size:2
Alignment explanation
Indices: 2598932--2598969 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
2598922 ATAAATTATT
2598932 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2598970 CACACACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2600680 original size:34 final size:34
Alignment explanation
Indices: 2600637--2600761 Score: 111
Period size: 34 Copynumber: 3.8 Consensus size: 34
2600627 TTCGTCCTAC
*
2600637 TAGGATTCAAACTCTTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
2600671 TAGGATTCAAACTCCTAAAGATATGATAGAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
*
2600706 GCTAGGATTC--A-----AAAAATAGGATATAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
2600735 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTCAAACTCCTAAAAATAGGAT
2600762 CCACAAGCAC
Statistics
Matches: 72, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
27 6 0.08
29 4 0.06
30 12 0.17
34 38 0.53
35 4 0.06
37 8 0.11
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:2605238 original size:21 final size:22
Alignment explanation
Indices: 2605214--2605268 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
2605204 AAAAAAAAAA
2605214 AAAAAGAAAAAAAAAG-AAG-AC
1 AAAAA-AAAAAAAAAGAAAGAAC
2605235 -AAAAAAAAAAAAAGAAAGAAC
1 AAAAAAAAAAAAAAGAAAGAAC
*
2605256 AAAAATAAAAAAA
1 AAAAAAAAAAAAA
2605269 GGGACAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 10 0.33
20 7 0.23
21 2 0.07
22 11 0.37
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAAAAAGAAAGAAC
Found at i:2605267 original size:29 final size:29
Alignment explanation
Indices: 2605204--2605268 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
2605194 CAAATAGGGC
2605204 AAAAAAAAAAAAAAAGAAAAAAAAAGAAG
1 AAAAAAAAAAAAAAAGAAAAAAAAAGAAG
* * *
2605233 ACAAAAAAAAAAAAAGAAAGAACAAA-AAT
1 AAAAAAAAAAAAAAAGAAA-AAAAAAGAAG
2605262 AAAAAAA
1 AAAAAAA
2605269 GGGACAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.88, C:0.03, G:0.08, T:0.02
Consensus pattern (29 bp):
AAAAAAAAAAAAAAAGAAAAAAAAAGAAG
Found at i:2605269 original size:21 final size:19
Alignment explanation
Indices: 2605204--2605279 Score: 79
Period size: 21 Copynumber: 4.1 Consensus size: 19
2605194 CAAATAGGGC
*
2605204 AAAAAAAAA-AA-A-AAAG
1 AAAAAAAAAGAAGACAAAA
2605220 AAAAAAAAAGAAGACAAAA
1 AAAAAAAAAGAAGACAAAA
2605239 AAAAAAAAAGAAAGAACAAAA
1 AAAAAAAAAG-AAG-ACAAAA
* *
2605260 ATAAAAAAAG-GGACAAAA
1 AAAAAAAAAGAAGACAAAA
2605278 AA
1 AA
2605280 GCACATGCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
16 9 0.18
17 2 0.04
18 8 0.16
19 14 0.27
20 3 0.06
21 15 0.29
ACGTcount: A:0.84, C:0.04, G:0.11, T:0.01
Consensus pattern (19 bp):
AAAAAAAAAGAAGACAAAA
Found at i:2605279 original size:1 final size:1
Alignment explanation
Indices: 2605204--2605268 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
2605194 CAAATAGGGC
* * * * * * * *
2605204 AAAAAAAAAAAAAAAGAAAAAAAAAGAAGACAAAAAAAAAAAAAGAAAGAACAAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2605269 GGGACAAAAA
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.88, C:0.03, G:0.08, T:0.02
Consensus pattern (1 bp):
A
Found at i:2606469 original size:18 final size:18
Alignment explanation
Indices: 2606435--2606470 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2606425 TCAATATCAA
* *
2606435 ATATTGGGGTATTTTTGG
1 ATATTGGGGCATATTTGG
2606453 ATATTGGGGCATATTTGG
1 ATATTGGGGCATATTTGG
2606471 GGATTCACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.33, T:0.44
Consensus pattern (18 bp):
ATATTGGGGCATATTTGG
Found at i:2607801 original size:106 final size:105
Alignment explanation
Indices: 2607615--2608607 Score: 1424
Period size: 105 Copynumber: 9.5 Consensus size: 105
2607605 GACGAAGGGG
* * * *
2607615 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
*
2607680 TCAACTTCACAACGAAGGGA-CGACTGGTTGTCAACAAACAA
66 TCAACTTCACGACGAAGGGACCG-CTGGTTGTCAAC-AACAA
* * * *
2607721 TTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAATT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
2607786 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAA
* * * *
2607827 CTTCTCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
* * *
2607892 TCAACTTCACAACGAAGGGACGGCTAGTTGTCAACAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
* * * *
2607932 TTTCCTAATTTCAGAGCTAGTTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
*
2607997 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-CAACAA
*
2608038 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
*
2608103 TCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
* * * *
2608143 CTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAAACAACGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
*
2608208 TCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
* * * *
2608248 CTTCCCAATCTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGAATCCAGACAATGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
* * *
2608313 TCAACTTTACGACGAAGGGACCACTGCTTGTCAACAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
*
2608353 CTTCCCAATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
*
2608418 TCAACTTCACGACGAAGGGACCGCTGTTTGTCAACAA-AA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
* ** * *
2608457 -TT-TC-A-TTCAGATTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
* * *
2608518 TCAACTTCACAACGAAGGGA-TGCTGATTGTCAACAAACAA
66 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAA
* * ** * * *
2608558 TTTTCCGGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
2608608 TGGAACAATG
Statistics
Matches: 804, Mismatches: 75, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
99 12 0.01
100 72 0.09
101 3 0.00
102 3 0.00
103 3 0.00
104 2 0.00
105 423 0.53
106 284 0.35
107 2 0.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (105 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGT
TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA
Found at i:2608021 original size:211 final size:210
Alignment explanation
Indices: 2607615--2608607 Score: 1453
Period size: 211 Copynumber: 4.7 Consensus size: 210
2607605 GACGAAGGGG
* *
2607615 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
* *
2607680 TCAACTTCACAACGAAGGGA-CGACTGGTTGTCAACAAACAATTTCCCAGTTTCAGAGCCAATTT
66 TCAACTTCACAACGAAGGGACCG-CTGCTTGTCAAC-AACAATTTCCCAATTTCAGAGCCAATTT
* *
2607744 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAATTTCAACTTCACGACGAAGGGACCG
129 CAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG
2607809 CTGGTTGTCAACAAACAA
194 CTGGTTGTCAAC-AACAA
* *
2607827 CTTCTCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
* * * *
2607892 TCAACTTCACAACGAAGGGACGGCTAG-TTGTCAACAACAATTTCCTAATTTCAGAGCTAGTTTC
66 TCAACTTCACAACGAAGGGACCGCT-GCTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTC
2607956 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
130 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
2608021 TGGTTGTCAATAAACAA
195 TGGTTGTCAA-CAACAA
* * *
2608038 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
* * *
2608103 TCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCA
66 TCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTCA
* * *
2608168 ACTTCACAATGAAGGATATTGGACTTCAAACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
131 ACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
*
2608233 GCTTGTCAACAACAA
196 GGTTGTCAACAACAA
* * * * **
2608248 CTTCCCAATCTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGAATCCAGACAATGCAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
* * * * *
2608313 TCAACTTTACGACGAAGGGACCACTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCAATTTTA
66 TCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTCA
2608378 ACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
131 ACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
*
2608443 GTTTGTCAACAA-AA
196 GGTTGTCAACAACAA
* ** *
2608457 -TT-TC-A-TTCAGATTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGT
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
* * * ** *
2608518 TCAACTTCACAACGAAGGGA-TGCTGATTGTCAACAAACAATTTTCCGGTTCCAGAGCCAATTTC
66 TCAACTTCACAACGAAGGGACCGCTGCTTGTCAAC-AACAATTTCCCAATTTCAGAGCCAATTTC
* *
2608582 AACTTCACGACGGAGGATATTGGACT
130 AACTTCACAACGAAGGATATTGGACT
2608608 TGGAACAATG
Statistics
Matches: 716, Mismatches: 60, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
204 11 0.02
205 115 0.16
206 1 0.00
207 1 0.00
208 2 0.00
209 2 0.00
210 200 0.28
211 290 0.41
212 92 0.13
213 2 0.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (210 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
TCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTCA
ACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
GGTTGTCAACAACAA
Found at i:2609199 original size:34 final size:34
Alignment explanation
Indices: 2609156--2609272 Score: 127
Period size: 34 Copynumber: 3.6 Consensus size: 34
2609146 TTCGTCCTAC
2609156 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
2609190 TAGGATTCAAACTCCTAAAGATATGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
2609224 T--G-CT-AATA-TTCAAAAAATAGGATAGAATTT
1 TAGGATTCAA-ACTCCTAAAAATAGGATAGAATTT
* *
2609254 TATGATTTAAACTCCTAAA
1 TAGGATTCAAACTCCTAAA
2609273 GATAAGATCC
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
30 21 0.31
31 2 0.03
32 2 0.03
33 2 0.03
34 40 0.60
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:2611665 original size:2 final size:2
Alignment explanation
Indices: 2611660--2611688 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2611650 TTTTTATAAC
2611660 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2611689 CATACAGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2615158 original size:12 final size:13
Alignment explanation
Indices: 2615110--2615160 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
2615100 ATATTATATT
* *
2615110 TAATTATTTGAAC
1 TAATTTTTTGTAC
*
2615123 AAATTTTATTGTAC
1 TAATTTT-TTGTAC
2615137 TAATTATTTTGTA-
1 TAATT-TTTTGTAC
2615150 TAATTTTTTGT
1 TAATTTTTTGT
2615161 GGTTGTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
12 6 0.19
13 10 0.31
14 14 0.44
15 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (13 bp):
TAATTTTTTGTAC
Done.