Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008125.1 Hibiscus syriacus cultivar Beakdansim tig00110679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75640

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1558--1754
40
4.9
40
82
3
218
32
16
20
29
1.95
1562--1738
81
2.2
79
82
4
212
32
17
20
28
1.96
6996--7041
19
2.6
17
83
10
58
58
0
0
41
0.98
10128--10196
9
7.3
9
76
9
66
17
27
28
26
1.97
10125--10182
29
2.0
30
89
3
91
20
24
29
25
1.99
10147--10194
19
2.5
20
90
6
66
18
25
31
25
1.98
10192--10247
17
3.3
17
97
0
103
17
46
25
10
1.80
17300--17330
9
3.4
9
95
0
53
16
58
22
3
1.52
17364--17413
10
4.8
11
78
9
52
18
26
24
32
1.97
17376--17437
10
6.4
9
80
12
70
16
27
29
27
1.97
17364--17432
20
3.4
21
84
13
92
17
26
26
30
1.97
17376--17437
19
3.2
19
88
6
81
16
27
29
27
1.97
17403--17443
19
2.2
19
95
0
73
19
24
29
26
1.98
17376--17445
10
7.3
9
78
10
50
17
28
27
27
1.97
20677--20746
2
35.5
2
97
2
133
48
0
0
51
1.00
20894--20999
23
4.3
24
79
11
99
53
0
3
42
1.18
21247--21324
40
2.0
40
86
0
111
16
26
38
17
1.92
21510--21589
21
4.0
21
70
21
64
31
1
3
63
1.20
27526--27598
29
2.5
29
84
4
94
17
4
36
41
1.69
27704--27781
40
2.0
40
92
0
129
19
37
25
17
1.94
34229--34274
21
2.2
21
84
0
56
30
30
26
13
1.93
34298--34346
22
2.2
22
82
7
64
32
30
28
8
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34703--34759
20
2.7
22
78
15
66
43
5
14
36
1.67
37704--37754
2
25.5
2
100
0
102
49
0
0
50
1.00
38172--38567
52
7.6
52
93
0
668
29
25
16
28
1.97
38434--38517
28
3.2
28
62
14
70
33
25
15
26
1.95
38563--38842
55
5.1
55
91
1
474
27
28
15
28
1.96
38563--38842
108
2.6
110
93
2
492
27
28
15
28
1.96
40134--40165
15
2.2
14
94
5
55
0
15
0
84
0.63
40122--40232
9
11.4
9
73
15
62
8
11
0
79
0.98
40127--40165
12
3.3
12
85
3
53
0
12
2
84
0.72
40152--40221
17
4.4
16
75
17
65
10
12
0
77
1.00
40148--40232
39
2.2
38
82
15
104
9
11
0
78
0.95
40167--40227
30
2.0
31
87
9
90
13
11
0
75
1.05
40160--40230
8
8.8
8
83
13
60
11
11
0
77
1.00
48609--48637
2
14.5
2
100
0
58
48
0
0
51
1.00
48857--49105
31
8.0
31
93
0
410
20
18
21
38
1.93
60449--60506
20
2.8
20
82
15
64
51
1
0
46
1.11
65902--66038
61
2.3
59
78
10
143
30
20
13
35
1.92

Tables:   1

The End!